- Volume 50(6); December 2012
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Research Support, Non-U.S. Gov'ts
- Effects of Elevated CO2 and Pb on the Microbial Community in the Rhizosphere of Pinus densiflora
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Sunghyun Kim , Sun Hwa Hong , Kyungsook Cho , Insook Lee , Gayoung Yoo , Hojeong Kang
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J. Microbiol. 2012;50(6):895-901. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2207-1
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Rising levels of atmospheric CO2 may stimulate forest productivity in the future, resulting in increased carbon storage in terrestrial ecosystems. However, heavy metal contamination may interfere with this, though the response is not yet known. In this study, we investigated the effect of elevated CO2 and Pb contamination on microorganisms and decomposition in pine tree forest soil. Three-year old pine trees
(Pinus densiflora) were planted in Pb contaminated soils (500 mg/kg-soil) and uncontaminated soils and cultivated for three months in a growth chamber where the CO2 concentration was controlled at 380 or 760 mg/kg. Structures of the microbial community were comparatively analyzed in bulk and in rhizosphere soil samples using community-level physiological profiling (CLPP) and 16S rRNA gene PCRDGGE
(denaturing gradient gel electrophoresis). Additionally, microbial activity in rhizospheric soil, growth and the C/N ratio of the pine trees were measured. Elevated CO2 significantly increased microbial activities and diversity in Pb contaminated soils due to the increase in carbon sources, and this increase was more distinctive in rhizospheric soil than in bulk soils. In addition, increased plant growth and C/N ratios of pine needles at elevated CO2 resulted in an increase in cation exchange capacity (CEC) and dissolved organic carbon (DOC) of the rhizosphere in Pb contaminated soil. Taken together, these findings indicate that elevated CO2 levels and heavy metals can affect the soil carbon cycle by
changing the microbial community and plant metabolism.
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- Gibberellin-Producing Promicromonospora sp. SE188 Improves Solanum lycopersicum Plant Growth and Influences Endogenous Plant Hormones
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Sang-Mo Kang , Abdul Latif Khan , Muhammad Hamayun , Javid Hussain , Gil-Jae Joo , Young-Hyun You , Jong-Guk Kim , In-Jung Lee
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J. Microbiol. 2012;50(6):902-909. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2273-4
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222
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Plant growth-promoting rhizobacteria (PGPR) producing gibberellins (GAs) can be beneficial to plant growth and development. In the present study, we isolated and screened a new strain of Promicromonospora sp., SE188, isolated from soil. Promicromonospora sp. SE188 secreted GAs into its growth medium and exhibited phosphate solubilization potential. The PGPR produced physiologically active (GA1 and GA4) and inactive (GA9, GA12, GA19, GA20, GA24, GA34, and GA53) GAs in various quantities detected by GC/MS-SIM. Solanum lycopersicum (tomato) plants inoculated with Promicromonospora sp. SE188 showed a significantly higher
shoot length and biomass as compared to controls where PGPR-free nutrient broth (NB) and distilled water (DW) were applied to plants. The presence of Promicromonospora sp. SE188 significantly up-regulated the non C-13 hydroxylation
GA biosynthesis pathway (GA12→GA24→GA9→GA4→GA34) in the tomato plants as compared to the NB and DW control plants. Abscisic acid, a plant stress hormone, was significantly down-regulated in the presence of Promicromonospora sp. SE188. Contrarily, salicylic acid was significantly higher in the tomato plant after Promicromonospora sp. SE188 inoculation as compared to the controls. Promicromonospora sp. SE188 showed promising stimulation of tomato plant growth. From the results it appears that Promicromonospora sp. SE188 has potential as a bio-fertilizer and should be more broadly tested in field trials for higher crop production in eco-friendly farming systems.
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Microorganisms.2025; 13(6): 1399. CrossRef - The dual nature of plant growth-promoting bacteria: Benefits, risks, and pathways to sustainable deployment
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Journal of Plant Growth Regulation.2024; 43(4): 963. CrossRef -
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Mircea Podar, Leah H. Hochanadel, William G. Alexander, Christopher W. Schadt, Dale A. Pelletier, Leighton Pritchard
Microbiology Resource Announcements.2024;[Epub] CrossRef - Differences of endophytic microbial compositions and metabolites in roots between fusarium wilt resistant and susceptible melon varieties
Yu Zhu, Yan Yin, Yufei Wei, Jiao-ming Li, Xun Wei, Guifen Li, Yunfeng Ye, Jinyan Huang, Shangdong Yang
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Nuria M. Wentzien, Antonio J. Fernández-González, Antonio Valverde-Corredor, Ana V. Lasa, Pablo J. Villadas, Wisnu Adi Wicaksono, Tomislav Cernava, Gabriele Berg, Manuel Fernández-López, Jesús Mercado-Blanco
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Jagjot Kaur, Gulab Pandove
Journal of Plant Nutrition.2023; 46(14): 3569. CrossRef - Pesticide-tolerant microbial consortia: Potential candidates for remediation/clean-up of pesticide-contaminated agricultural soil
Mohammad Shahid, Mohammad Saghir Khan, Udai B. Singh
Environmental Research.2023; 236: 116724. CrossRef - Fostering plant resilience to drought with Actinobacteria: Unveiling perennial allies in drought stress tolerance
Marzieh Ebrahimi-Zarandi, Hassan Etesami, Bernard R. Glick
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Seham M. Hamed, Marwa Kamal, Nevein A. S. Messiha
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Xiaoyan Liu, Hongmei Wang, Weiqi Wang, Xiaoyu Cheng, Yiheng Wang, Qing Li, Lu Li, Liyuan Ma, Xiaolu Lu, Olli H. Tuovinen
Frontiers in Microbiology.2023;[Epub] CrossRef - Isolation and Molecular Characterization of Plant Growth Promoting Rhizobacteria from Groundnut (Arachis Hypogaea L.) Rhizosphere
Gunja Vasant, Shweta Bhatt, Ragini Raghav
Current Agriculture Research Journal.2023; 11(1): 337. CrossRef - Zinc-solubilizing Bacillus spp. in conjunction with chemical fertilizers enhance growth, yield, nutrient content, and zinc biofortification in wheat crop
Ramesh Chandra Yadav, Sushil K. Sharma, Ajit Varma, Udai B. Singh, Adarsh Kumar, Ingudam Bhupenchandra, Jai P. Rai, Pawan K. Sharma, Harsh V. Singh
Frontiers in Microbiology.2023;[Epub] CrossRef - Actinobacteria as a source of biofertilizer/biocontrol agents for bio-organic agriculture
Manigundan Kaari, Radhakrishnan Manikkam, Kishore Kumar Annamalai, Jerrine Joseph
Journal of Applied Microbiology.2023;[Epub] CrossRef - Combination of Bacillus and Low Fertigation Input Promoted the Growth and Productivity of Chinese Cabbage and Enriched Beneficial Rhizosphere Bacteria Lechevalieria
Shi-Chang Zhang, Yu-Lu Zhang, Xiao-Jing Guo, Ming Luo, Shi-Dong Li, Rong-Jun Guo
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Feng Gao, Lei Yang, Ai-Jie Chen, Wang-Hao Zhou, Dong-Zhi Chen, Jian-Meng Chen
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Bioresource Technology.2022; 351: 126900. CrossRef - Actinomycetes as the Basis of Probiotics for Plants
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Applied Biochemistry and Microbiology.2022; 58(7): 827. CrossRef - Insight into Recent Progress and Perspectives in Improvement of Antioxidant Machinery upon PGPR Augmentation in Plants under Drought Stress: A Review
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Pratibha Rawat, Anita Sharma, Deepti Shankhdhar, S. C. Shankhdhar
Geomicrobiology Journal.2022; 39(6): 445. CrossRef - Influence of graphene on the multiple metabolic pathways of Zea mays roots based on transcriptome analysis
Zhiwen Chen, Jianguo Zhao, Jie Song, Shenghua Han, Yaqin Du, Yuying Qiao, Zehui Liu, Jun Qiao, Weijia Li, Jingwei Li, Haiyan Wang, Baoyan Xing, Qiliang Pan, Wei Wang
PLOS ONE.2021; 16(1): e0244856. CrossRef - Actinomycetes as the basis of Probiotics for Plants
O.V. Ryabova, A.A. Gagarina
Biotekhnologiya.2021; 37(2): 3. CrossRef - Rhizosphere Engineering With Plant Growth-Promoting Microorganisms for Agriculture and Ecological Sustainability
Sughra Hakim, Tahir Naqqash, Muhammad Shoib Nawaz, Iqra Laraib, Muhammad Jawad Siddique, Rabisa Zia, Muhammad Sajjad Mirza, Asma Imran
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Janjira Wiriya, Chakrapong Rangjaroen, Neung Teaumroong, Rungroch Sungthong, Saisamorn Lumyong
Plants.2020; 9(12): 1773. CrossRef - Halotolerant plant growth–promoting bacteria: Prospects for alleviating salinity stress in plants
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Environmental and Experimental Botany.2020; 178: 104124. CrossRef - Isolation and Characterization of the High Silicate and Phosphate Solubilizing Novel Strain Enterobacter ludwigii GAK2 that Promotes Growth in Rice Plants
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Sonia Salazar-Cerezo, Nancy Martínez-Montiel, Jenny García-Sánchez, Rocío Pérez-y-Terrón, Rebeca D. Martínez-Contreras
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Environmental Science and Pollution Research.2018; 25(4): 3657. CrossRef - Plant growth promoting effect of Bacillus amyloliquefaciens H-2-5 on crop plants and influence on physiological changes in soybean under soil salinity
Min-Ji Kim, Ramalingam Radhakrishnan, Sang-Mo Kang, Young-Hyun You, Eun-Ju Jeong, Jong-Guk Kim, In-Jung Lee
Physiology and Molecular Biology of Plants.2017; 23(3): 571. CrossRef - Effect of plant growth-promoting Rhizobacteria on plant hormone homeostasis
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Jiemin Zhou, Xuming Bai, Ruilin Zhao
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PLOS ONE.2017; 12(3): e0173203. CrossRef - Bacterial endophytes from arid land plants regulate endogenous hormone content and promote growth in crop plants: an example of Sphingomonas sp. and Serratia marcescens
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Journal of Plant Interactions.2017; 12(1): 31. CrossRef - Crop molds and mycotoxins: Alternative management using biocontrol
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Ihsan Ullah, Yasir Anwar, Khalid M S Al-Ghamdi, Ahmad Firoz, Jae-Ho Shin
Journal of Experimental Biology and Agricultural Sciences.2017; 5(6): 907. CrossRef - Production, Optimization, and Characterization of Organic Solvent Tolerant Cellulases from a Lignocellulosic Waste-Degrading Actinobacterium, Promicromonospora sp. VP111
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Applied Biochemistry and Biotechnology.2016; 179(5): 863. CrossRef - A Complex Molecular Interplay of Auxin and Ethylene Signaling Pathways Is Involved in Arabidopsis Growth Promotion by Burkholderia phytofirmans PsJN
María J. Poupin, Macarena Greve, Vicente Carmona, Ignacio Pinedo
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Furkan Orhan
Brazilian Journal of Microbiology.2016; 47(3): 621. CrossRef - Isolation and Characterization of Salt-Tolerant Bacterial Strains in Salt-Affected Soils of Erzurum, Turkey
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Geomicrobiology Journal.2015; 32(6): 521. CrossRef - Gibberellins synthesized by the entomopathogenic bacterium, Photorhabdus temperata M1021 as one of the factors of rice plant growth promotion
Ihsan Ullah, Abdur Rahim Khan, Byung Kwon Jung, Abdul Latif Khan, In-Jung Lee, Jae-Ho Shin
Journal of Plant Interactions.2014; 9(1): 775. CrossRef
- Fungal Community Associated with Genetically Modified Poplar During Metal Phytoremediation
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Moonsuk Hur , Young Woon Lim , Jae Jeong Yu , Se Uk Cheon , Young Im Choi , Seok-Hwan Yoon , Sang-Cheol Park , Dong-Il Kim , Hana Yi
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J. Microbiol. 2012;50(6):910-915. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2491-9
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Due to the increasing demand for phytoremediation, many transgenic poplars have been developed to enhance the bioremediation of heavy metals. However, structural changes to indigenous fungal communities by genetically modified organisms (GMO) presents a major ecological issue, due to the important role of fungi for plant growth in natural environments. To evaluate the effect of GM plant use on environmental fungal soil communities, extensive sequencing-based community analysis was conducted, while controlling the influence of plant clonality, plant age, soil condition, and harvesting season. The rhizosphere soils of GM and wild
type (WT) poplars at a range of growth stages were sampled together with unplanted, contaminated soil, and the fungal community structures were investigated by pyrosequencing the D1/D2 region of the 28S rRNA gene. The results show
that the overall structure of the rhizosphere fungal community was not significantly influenced by GM poplars. However, the presence of GM specific taxa, and faster rate of community change during poplar growth, appeared to be characteristic of the GM plant-induced effects on soil-born fungal communities. The results of this study provide additional information about the potential effects of GM poplar trees aged
1.5–3 years, on the soil fungal community.
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- Pinus radiata as a dendro-remediation species against nitrate leaching in the New Zealand primary industrial areas: Current snapshot and prospects
Jihwi Jang
Agriculture, Ecosystems & Environment.2024; 370: 109047. CrossRef - Harnessing an arbuscular mycorrhizal fungus to improve the adaptability of a facultative metallophytic poplar (Populus yunnanensis) to cadmium stress: Physiological and molecular responses
Di Liu, Kuanyu Zheng, Yue Wang, Yan Zhang, Ruimin Lao, Zhiyang Qin, Tao Li, Zhiwei Zhao
Journal of Hazardous Materials.2022; 424: 127430. CrossRef - Heavy metals speciation and distribution of microbial communities in sediments from the abandoned Mo-Ni polymetallic mines, southwest of China
Shenwen Cai, Shaoqi Zhou, Junwei Cheng, Qinghe Wang, Ying Dai
Environmental Science and Pollution Research.2022; 29(23): 35350. CrossRef - Metabolic engineering of Oryza sativa for complete biodegradation of thiocyanate
Jian-Jie Gao, Bo Wang, Zhen-Jun Li, Jing Xu, Xiao-Yan Fu, Hong-Juan Han, Li-Juan Wang, Wen-Hui Zhang, Yong-Dong Deng, Yu Wang, Ze-Hao Gong, Yong-Sheng Tian, Ri-He Peng, Quan-Hong Yao
Science of The Total Environment.2022; 820: 153283. CrossRef - Diversity of endophytic bacteria and fungi in seeds of Elymus nutans growing in four locations of Qinghai Tibet Plateau, China
Jianxiu Guo, Saman Bowatte, Fujiang Hou
Plant and Soil.2021; 459(1-2): 49. CrossRef - Distinct Communities of Poplar Endophytes on an Unpolluted and a Risk Element-Polluted Site and Their Plant Growth-Promoting Potential In Vitro
C. S. Schmidt, P. Lovecká, L. Mrnka, A. Vychodilová, M. Strejček, M. Fenclová, K. Demnerová
Microbial Ecology.2018; 75(4): 955. CrossRef - Actinorhizal Alder Phytostabilization Alters Microbial Community Dynamics in Gold Mine Waste Rock from Northern Quebec: A Greenhouse Study
Katrina L. Callender, Sébastien Roy, Damase P. Khasa, Lyle G. Whyte, Charles W. Greer, Zhili He
PLOS ONE.2016; 11(2): e0150181. CrossRef - A novel nitrous oxide mitigation strategy: expressing nitrous oxide reductase fromPseudomonas stutzeriin transgenic plants
Shen Wan, Trevor Greenham, Kagami Goto, Yaseen Mottiar, Amanda M. Johnson, Julianne M. Staebler, Mohsin A. Zaidi, Qingyao Shu, Illimar Altosaar
Canadian Journal of Plant Science.2014; 94(6): 1013. CrossRef - Identifying airborne fungi in Seoul, Korea using metagenomics
Seung-Yoon Oh, Jonathan J. Fong, Myung Soo Park, Limseok Chang, Young Woon Lim
Journal of Microbiology.2014; 52(6): 465. CrossRef - Tracking Fungal Community Responses to Maize Plants by DNA- and RNA-Based Pyrosequencing
Eiko E. Kuramae, Erik Verbruggen, Remy Hillekens, Mattias de Hollander, Wilfred F. M. Röling, Marcel G. A. van der Heijden, George A. Kowalchuk, Mari Moora
PLoS ONE.2013; 8(7): e69973. CrossRef
- Effects of Nutritional Input and Diesel Contamination on Soil Enzyme Activities and Microbial Communities in Antarctic Soils
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Jiwon Han , Jaejoon Jung , Seunghun Hyun , Hyun Park , Woojun Park
-
J. Microbiol. 2012;50(6):916-924. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2636-x
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161
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Pollution of Antarctic soils may be attributable to increased nutritional input and diesel contamination via anthropogenic activities. To investigate the effect of these environmental changes on the Antarctic terrestrial ecosystem, soil enzyme activities and microbial communities in 3 types of Antarctic soils were evaluated. The activities of alkaline phosphomonoesterase and dehydrogenase were dramatically increased, whereas the activities of β-glucosidase, urease, arylsulfatase, and fluorescein diacetate hydrolysis were negligible. Alkaline phosphomonoesterase and dehydrogenase activities in the 3 types of soils increased 3- to 10-fold in response to nutritional input, but did not increase in the presence of diesel
contamination. Consistent with the enzymatic activity data, increased copy numbers of the phoA gene, encoding an alkaline phosphomonoesterase, and the 16S rRNA gene were verified using quantitative real-time polymerase chain reaction.
Interestingly, dehydrogenase activity and 16S rRNA gene copy number increased slightly after 30 days, even under diesel contamination, probably because of adaptation of the bacterial population. Intact Antarctic soils showed a predominance
of Actinobacteria phylum (mostly Pseudonorcarida species) and other phyla such as Proteobacteria, Chloroflexi, Planctomycetes, Firmicutes, and Verrucomicrobia were present in successively lower proportions. Nutrient addition might act
as a selective pressure on the bacterial community, resulting in the prevalence of Actinobacteria phylum (mostly Arthrobacter species). Soils contaminated by diesel showed a predominance of Proteobacteria phylum (mostly Phyllobacterium species), and other phyla such as Actinobacteria, Bacteroidetes, Planctomycetes, and Gemmatimonadetes were present in successively lower proportions. Our data reveal that nutritional input has a dramatic impact on bacterial communities in Antarctic soils and that diesel contamination is likely toxic to enzymes in this population.
- Characterization, Metabolites and Gas Formation of Fumarate Reducing Bacteria Isolated from Korean Native Goat (Capra hircus coreanae)
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Lovelia L. Mamuad , Seon Ho Kim , Sung Sil Lee , Kwang Keun Cho , Che Ok Jeon , Sang-Suk Lee
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J. Microbiol. 2012;50(6):925-931. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2497-3
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239
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Fumarate reducing bacteria, able to convert fumarate to succinate, are possible to use for the methane reduction in rumen because they can compete for H2 with methanogens. In this, we isolated fumarate reducing bacteria from a rumen of Korean native goat and characterized their molecular properties [fumarate reductase A gene (frdA)], fumarate reductase activities, and productions of volatile fatty acids and gas. Eight fumarate reducing bacteria belonging to Firmicutes were isolated from rumen fluid samples of slaughtered Korean black goats and characterized their phylogenetic positions based on 16S rRNA gene sequences. PCR based analyses
showed that only one strain, closely related to Mitsuokella jalaludinii, harbored frdA. The growths of M. jalaludinii and Veillonella parvula strains were tested for different media. Interestingly, M. jalaludinii grew very well in the presence of hydrogen alone, while V. parvula grew well in response of fumarate and fumarate plus hydrogen. M. jalaludinii produced higher levels of lactate (P≤0.05) than did V. parvula. Additionally, M. jalaludinii produced acetate, but not butyrate, whereas V. parvula produced butyrate, not acetate. The fumarate reductase activities of M. jalaludinii and V. parvula were 16.8 ± 0.34 and 16.9 ± 1.21 mmol NADH oxidized/min/mg of cellular N, respectively. In conclusion, this showed that M. jalaludinii can be used as an efficient methane reducing agent in rumen.
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- High-solid anaerobic acidification of cassava pulp in leach-bed reactors-inoculated with Clostridium butyricum-rich microbial consortiums and its prospective for biogas
Alifia Issabella Mulyawati, Benjaphon Suraraksa, Pawinee Chaiprasert
Biomass Conversion and Biorefinery.2025;[Epub] CrossRef - Hydrogenosome, Pairing Anaerobic Fungi and H2-Utilizing Microorganisms Based on Metabolic Ties to Facilitate Biomass Utilization
Jing Ma, Pei Zhong, Yuqi Li, Zhanying Sun, Xiaoni Sun, Min Aung, Lizhuang Hao, Yanfen Cheng, Weiyun Zhu
Journal of Fungi.2022; 8(4): 338. CrossRef - Dietary wheat and reduced methane yield are linked to rumen microbiome changes in dairy cows
Keith W. Savin, Peter J. Moate, S. R. O. Williams, Carolyn Bath, Joanne Hemsworth, Jianghui Wang, Doris Ram, Jody Zawadzki, Simone Rochfort, Benjamin G. Cocks, James E. Wells
PLOS ONE.2022; 17(5): e0268157. CrossRef - Reducing Enteric Methanogenesis through Alternate Hydrogen Sinks in the Rumen
Prasanta Kumar Choudhury, Rajashree Jena, Sudhir Kumar Tomar, Anil Kumar Puniya
Methane.2022; 1(4): 320. CrossRef - Ruminal microbiome-host crosstalk stimulates the development of the ruminal epithelium in a lamb model
Limei Lin, Fei Xie, Daming Sun, Junhua Liu, Weiyun Zhu, Shengyong Mao
Microbiome.2019;[Epub] CrossRef - Recent insight and future techniques to enhance rumen fermentation in dairy goats
Lovelia L. Mamuad, Sung Sill Lee, Sang Suk Lee
Asian-Australasian Journal of Animal Sciences.2019; 32(8): 1321. CrossRef - Methanobacterium formicicum as a target rumen methanogen for the development of new methane mitigation interventions: A review
P Chellapandi, M Bharathi, C Sangavai, R Prathiviraj
Veterinary and Animal Science.2018; 6: 86. CrossRef - Diet and feed efficiency status affect rumen microbial profiles of sheep
M.J. Ellison, G.C. Conant, W.R. Lamberson, R.R. Cockrum, K.J. Austin, D.C. Rule, K.M. Cammack
Small Ruminant Research.2017; 156: 12. CrossRef - Quantification of organic acids in ruminal in vitro batch culture fermentation supplemented with fumarate using a herb mix as a substrate
J. Pisarčíková, Z. Váradyová, K. Mihaliková, S. Kišidayová, J. Plaizier
Canadian Journal of Animal Science.2016; 96(1): 60. CrossRef - Effect of Lactobacillus mucosae on In vitro Rumen Fermentation Characteristics of Dried Brewers Grain, Methane Production and Bacterial Diversity
Alvin P. Soriano, Lovelia L. Mamuad, Seon-Ho Kim, Yeon Jae Choi, Chang Dae Jeong, Gui Seck Bae, Moon Baek Chang, S. Suk Lee
Asian-Australasian Journal of Animal Sciences.2014; 27(11): 1562. CrossRef - Effect of fumarate reducing bacteria on in vitro rumen fermentation, methane mitigation and microbial diversity
Lovelia Mamuad, Seon Ho Kim, Chang Dae Jeong, Yeon Jae Choi, Che Ok Jeon, Sang-Suk Lee
Journal of Microbiology.2014; 52(2): 120. CrossRef - Characterization of rumen bacterial strains isolated from enrichments of rumen content in the presence of propolis
Sílvia Cristina de Aguiar, Lucia Maria Zeoula, Odimari Pricila Pires do Prado, Pedro Braga Arcuri, Evelyne Forano
World Journal of Microbiology and Biotechnology.2014; 30(11): 2917. CrossRef
- DsbM, a Novel Disulfide Oxidoreductase Affects Aminoglycoside Resistance in Pseudomonas aeruginosa by OxyR-Regulated Response
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Xuehan Wang , Mingxuan Li , Liwei Liu , Rui Mou , Xiuming Zhang , Yanling Bai , Haijin Xu , Mingqiang Qiao
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J. Microbiol. 2012;50(6):932-938. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2177-3
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228
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4
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A Pseudomonas aeruginosa mutant strain M122 was isolated from a Mu transposon insertion mutant library. In our prophase research, we have found that PA0058, a novel gene encodes a 234-residue conserved protein, was disrupted in the M122 mutant. In this study, the bacteriostatic experiment in vitro indicates that M122 has abnormally high aminoglycoside resistance. We expressed PA0058 in E. coli and found that PA0058 oxidizes and reduces disulfide. This biochemical characterization suggests that PA0058 is a novel disulfide oxidoreductase. Hence, the protein was designated as DsbM. Microarray analysis of the M122 mutant showed its unusual phenotype might be related to the bacterial antioxidant defense system mediated by the oxyR regulon. Meanwhile, we detected –SH content in the periplasm of M122 and wild strain and found a lower –SH/S–S ratio in M122. Therefore, we consider that the loss of dsbM function decreased the –SH/S–S ratio, which then prolongs the
OxyR-regulated response, thereby conferring high aminoglycoside resistance to the M122 mutant strain. Our findings have important implications for understanding the mechanisms underlying aminoglycoside resistance in P. aeruginosa.
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Citations
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Redox Protein OsaR (PA0056) Regulates
dsbM
and the Oxidative Stress Response in Pseudomonas aeruginosa
Yujie Liu, Yibing Ma, Zhongqiang Ma, Xiao Han, Hang Qi, Jens Bo Andersen, Haijin Xu, Tim Tolker-Nielsen, Mingqiang Qiao
Antimicrobial Agents and Chemotherapy.2021;[Epub] CrossRef - OxiR specifically responds to isoniazid and regulates isoniazid susceptibility in mycobacteria
Min Yang, Li Zhang, Hui-Ling Tao, Yuan-Chao Sun, Zhong-Zi Lou, Wan-Zhong Jia, Li-Hua Hu, Chun-Hui Gao
FEMS Microbiology Letters.2019;[Epub] CrossRef -
Disulfide Bond Formation in the Periplasm of
Escherichia coli
Bruno Manta, Dana Boyd, Mehmet Berkmen, James M. Slauch, Michael Ehrmann
EcoSal Plus.2019;[Epub] CrossRef - DsbM affects aminoglycoside resistance inPseudomonas aeruginosaby the reduction of OxyR
Mingxuan Li, Xinyu Guan, Xuehan Wang, Haijin Xu, Yanling Bai, Xiuming Zhang, Mingqiang Qiao
FEMS Microbiology Letters.2014; 352(2): 184. CrossRef
- Characterization, Cloning, and Heterologous Expression of a Subtilisin-Like Serine Protease Gene VlPr1 from Verticillium lecanii
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Gang Yu , Jin-Liang Liu , Li-Qin Xie , Xue-Liang Wang , Shi-Hong Zhang , Hong-Yu Pan
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J. Microbiol. 2012;50(6):939-946. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2199-x
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194
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12
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The entomopathogenic fungus Verticillium lecanii is a wellknown biocontrol agent. V. lecanii produces subtilisin-like serine protease (Pr1), which is important in the biological control activity of some insect pests by degrading insect cuticles. In this study, a subtilisin-like serine protease gene VlPr1 was cloned from the fungus and the VlPr1 protein was expressed in Escherichia coli. The VlPr1 gene contains
an open reading frame (ORF) interrupted by three short introns, and encodes a protein of 379 amino acids. Protein sequence analysis revealed high homology with subtilisin serine proteases. The molecular mass of the protease was 38 kDa, and the serine protease exhibited its maximal activity at 40°C and pH 9.0. Protease activity was also affected by Mg2+ and Ca2+ concentration. The protease showed inhibitory activity against several plant pathogens, especially towards Fusarium moniliforme.
- Quantification of Rice Brown Leaf Spot through Taqman Real-Time PCR Specific to the Unigene Encoding Cochliobolus miyabeanus SCYTALONE DEHYDRATASE1 Involved in Fungal Melanin Biosynthesis
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Mukhamad Su’udi , Jong-Mi Park , Woo-Ri Kang , Sang-Ryeol Park , Duk-Ju Hwang , Il-Pyung Ahn
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J. Microbiol. 2012;50(6):947-954. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2538-y
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269
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5
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Abstract
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Rice brown leaf spot is a major disease in the rice paddy field. The causal agent Cochliobolus miyabeanus is an ascomycete fungus and a representative necrotrophic pathogen in the investigation of rice-microbe interactions. The aims of this research were to identify a quantitative evaluation method to determine the amount of C. miyabeanus proliferation in planta and determine the method’s sensitivity. Real-time polymerase chain reaction (PCR) was employed in combination
with the primer pair and Taqman probe specific to CmSCD1, a C. miyabeanus unigene encoding SCYTALONE DEHYDRATASE, which is involved in fungal melanin biosynthesis. Comparative analysis of the nucleotide sequences of CmSCD1 from Korean strains with those from the Japanese and Taiwanese strains revealed some sequence differences. Based on the crossing point (CP) values from Taqman realtime PCR containing a series of increasing concentrations of cloned amplicon or fungal genomic DNA, linear regressions with a high level of reliability (R2>0.997) were constructed. This system was able to estimate fungal genomic DNA at the picogram level. The reliability of this equation was further confirmed using DNA samples from both resistant and susceptible cultivars infected with C. miyabeanus. In summary, our quantitative system is a powerful alternative in brown leaf spot forecasting and in the consistent evaluation of disease progression.
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Citations
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- Foliar Diseases and the Associated Fungi in Rice Cultivated in Kenya
Everlyne M. Nganga, Martina Kyallo, Philemon Orwa, Felix Rotich, Emily Gichuhi, John M. Kimani, David Mwongera, Bernice Waweru, Phoebe Sikuku, David M. Musyimi, Samuel K. Mutiga, Cathrine Ziyomo, Rosemary Murori, Lusike Wasilwa, James C. Correll, Nicholas
Plants.2022; 11(9): 1264. CrossRef - Monitoring and Surveillance of Aerial Mycobiota of Rice Paddy through DNA Metabarcoding and qPCR
Sara Franco Ortega, Ilario Ferrocino, Ian Adams, Simone Silvestri, Davide Spadaro, Maria Lodovica Gullino, Neil Boonham
Journal of Fungi.2020; 6(4): 372. CrossRef - Overexpression of BSR1 confers broad-spectrum resistance against two bacterial diseases and two major fungal diseases in rice
Satoru Maeda, Nagao Hayashi, Takahide Sasaya, Masaki Mori
Breeding Science.2016; 66(3): 396. CrossRef - Quantification of Alternaria brassicicola infection in the Arabidopsis thaliana and Brassica rapa subsp. pekinensis
Mukhamad Su’udi, Jong-Mi Park, Sang-Ryeol Park, Duk-Ju Hwang, Shin-Chul Bae, Soonok Kim, Il-Pyung Ahn
Microbiology.2013; 159(Pt_9): 1946. CrossRef - Evaluation of bakanae disease progression caused by Fusarium fujikuroi in Oryza sativa L.
In Sun Hwang, Woo-Ri Kang, Duk-Ju Hwang, Shin-Chul Bae, Sung-Hwan Yun, Il-Pyung Ahn
Journal of Microbiology.2013; 51(6): 858. CrossRef
- Genetic Organization and Conjugal Plasmid DNA Transfer of pHP69, a Plasmid from a Korean Isolate of Helicobacter pylori
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Jung-Soo Joo , Jae-Young Song , Seung-Chul Baik , Woo-Kon Lee , Myung-Je Cho , Kon-Ho Lee , Hee-Shang Youn , Ji-Hyun Seo , Kwang-Ho Rhee , Hyung-Lyun Kang
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J. Microbiol. 2012;50(6):955-961. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2580-9
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295
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4
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We isolated pHP69, a 9,153 bp plasmid from Helicobacter pylori with a 33.98% (G+C) content. We identified 11 open reading frames (ORFs), including replication initiation protein A (repA), fic (cAMP-induced filamentation protein), mccC, mccB, mobA, mobD, mobB, and mobC, as well as four 22 bp tandem repeat sequences. The nucleic acid and predicted amino acid sequences of these ORFs exhibited significant homology to those of other H. pylori plasmids. pHP69 repA encodes a replication initiation protein and its amino acid sequence is similar to those of replicase proteins from theta-type plasmids. pHP69 contains two types of repeat
sequences (R1 and R2), a MOBHEN family mobilization region comprising mobC, mobA, mobB, and mobD, and genes encoding microcin B and C. Among the 36 H. pylori strains containing plasmids, mobA or mccBC are present in 12 or 6, respectively and 3 contain both genes. To examine intrinsic capability of H. pylori for conjugative plasmid transfer, a shuttle vector pBHP69KH containing pHP69 and replication origin of pBR322 was constructed. It was shown that this vector could stably replicate and be mobilized among clinical H. pylori strains and demonstrated to gene transfer by natural plasmid.
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- Comprehensive plasmidomic analysis of Helicobacter pylori reveals the potential role of plasmids in pathogenic adaptation and a novel putative toxin-antitoxin system
Bradd Mendoza-Guido, Juan D Romero-Carpio, Silvia Molina-Castro
FEMS Microbiology Letters.2025;[Epub] CrossRef - Four Chromosomal Type IV Secretion Systems in Helicobacter pylori: Composition, Structure and Function
Wolfgang Fischer, Nicole Tegtmeyer, Kerstin Stingl, Steffen Backert
Frontiers in Microbiology.2020;[Epub] CrossRef - Two novel transcriptional reporter systems for monitoring Helicobacter pylori stress responses
A.M. Belova, D.V. Basmanov, V.V. Babenko, O.V. Podgorny, T.V. Mitko, K.A. Prusakov, D.V. Klinov, V.N. Lazarev
Plasmid.2019; 106: 102442. CrossRef - DNA transfer in the gastric pathogen Helicobacter pylori
Esther Fernandez-Gonzalez, Steffen Backert
Journal of Gastroenterology.2014; 49(4): 594. CrossRef
- Molecular Serotyping of Salmonella enterica by Complete rpoB Gene Sequencing
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Won-Jin Seong , Hyuk-Joon Kwon , Tae-Eun Kim , Deog-Yong Lee , Mi-Sun Park , Jae-Hong Kim
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J. Microbiol. 2012;50(6):962-969. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2547-x
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200
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18
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Serotyping has been the gold standard for identifying Salmonella, but it requires large amounts of standard antisera. Multilocus sequence typing (MLST) has been applied to identify Salmonella serovars, but the recombination of 4–7 housekeeping genes and multiple analytic steps diminish its applicability. In the present study, we determined the complete sequences of the RNA polymerase beta subunit gene
(rpoB) and 7 housekeeping genes (aroC, dnaN, hemD, hisD, purE, sucA, and thrA) for 76 strains of 33 Salmonella enterica serovars and conducted phylogenetic analyses together with the corresponding gene sequences of 24 reference strains
registered in the GenBank database. Based on the phylogenetic analyses, 100 strains from 40 serovars and 91 strains from 37 serovars were classified into 60 rpoB (RST) and 49 multilocus sequence types (ST), respectively. The nucleotide
similarities were 98.8–100% and 96.9–100% for the complete rpoB gene and the seven concatenated housekeeping genes, respectively. The strains of 35 and 30 serovars formed serovar-specific branches or clusters in the rpoB and housekeeping gene phylogenetic trees, respectively. Therefore, complete rpoB gene sequencing and phylogenetic analysis may be a useful method for identifying Salmonella serovars that is a simpler, more cost-effective, and less time-consuming
alternative or complementary method to MLST and conventional serotyping.
- Simultaneous Detection of Major Enteric Viruses Using a Combimatrix Microarray
-
Ju-Mi Kim , Sung Yeon Kim , Young Bin Park , Hye Jin Kim , Byung Sup Min , Jae-Chang Cho , Jai Myung Yang , You-Hee Cho , GwangPyo Ko
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J. Microbiol. 2012;50(6):970-977. Published online October 27, 2012
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DOI: https://doi.org/10.1007/s12275-012-2228-9
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176
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19
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Abstract
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Various enteric viruses including norovirus, rotavirus, adenovirus, and astrovirus are the major etiological agents of food-borne and water-borne disease outbreaks and frequently cause non-bacterial gastroenteritis worldwide. Sensitive and
high-throughput detection methods for these viral pathogens are compulsory for diagnosing viral pathogens and subsequently improving public health. Hence, we developed a sensitive, specific, and high-throughput analytical assay to detect most major enteric viral pathogens using “Combimatrix” platform oligonucleotide probes. In order to detect four different enteric viral pathogens in a sensitive and simultaneous
manner, we first developed a multiplex RT-PCR assay targeting partial gene sequences of these viruses with fluorescent labeling for the subsequent microarray. Then, five olignonucleotides specific to each of the four major enteric viruses were selected for the microarray from the oligonulceotide pools targeting the specific genes obtained by multiplex PCR of these viruses. The oligonucleotide microarray
was evaluated against stool specimens containing single or mixed viral species. As a result, we demonstrated that the multiplex RT-PCR assay specifically amplified partial sequences of four enteric viruses and the subsequent microarray
assay was capable of sensitive and simultaneous detection of those viruses. The developed method could be useful for diagnosing enteric viruses in both clinical and
environmental specimens.
- Identification of Conserved Surface Proteins as Novel Antigenic Vaccine Candidates of Actinobacillus pleuropneumoniae
-
Xiabing Chen , Zhuofei Xu , Lu Li , Huanchun Chen , Rui Zhou
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J. Microbiol. 2012;50(6):978-986. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2214-2
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267
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11
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Actinobacillus pleuropneumoniae is an important swine respiratory pathogen causing great economic losses worldwide. Identification of conserved surface antigenic proteins is helpful for developing effective vaccines. In this study, a genome-wide strategy combined with bioinformatic and experimental approaches, was applied to discover and characterize surface-associated immunogenic proteins of A. pleuropneumoniae. Thirty nine genes encoding outer membrane proteins (OMPs) and lipoproteins were identified by comparative genomics and gene expression profiling as beinghighly conserved and stably transcribed in the different serotypes of A. pleuropneumoniae reference strains. Twelve of these conserved proteins were successfully expressed in Escherichia coli and their immunogenicity was estimated by homologous challenge in the mouse model, and then three of these proteins (APJL_0126, HbpA and OmpW) were further tested in the natural host (swine) by homologous and heterologous challenges. The results showed that these proteins could induce high titers of antibodies, but vaccination with each protein individually elicited low protective immunity against A. pleuropneumoniae. This study gives novel insights into immunogenicity of the conserved OMPs and lipoproteins of A. pleuropneumoniae. Although none of the surface proteins characterized in this study could individually induce effective protective immunity against A. pleuropneumoniae, they are potential candidates for subunit vaccines in combination with Apx toxins.
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- Identification of candidate vaccine antigens using 2-D gel electrophoresis and immunoproteomics for cross protection against Glaesserella parasuis
Samantha J. Hau, Kirsten C. Eberle, Jarlath E. Nally, Daniel W. Nielsen, John D. Lippolis, Susan L. Brockmeier
Veterinary Microbiology.2025; 307: 110594. CrossRef - De novo identification of bacterial antigens of a clinical isolate by combining use of proteosurfaceomics, secretomics, and BacScan technologies
Jinyue Yang, Xueting Zhang, Junhua Dong, Qian Zhang, Erchao Sun, Cen Chen, Zhuangxia Miao, Yifei Zheng, Nan Zhang, Pan Tao
Frontiers in Immunology.2023;[Epub] CrossRef - Identification of a Novel Linear B-Cell Epitope of HbpA Protein from Glaesserella parasuis Using Monoclonal Antibody
Geyan Liu, Kang Wang, Zhen Yang, Xiaoyu Tang, Yung-Fu Chang, Ke Dai, Xinwei Tang, Bangdi Hu, Yiwen Zhang, Sanjie Cao, Xiaobo Huang, Qigui Yan, Rui Wu, Qin Zhao, Senyan Du, Xintian Wen, Yiping Wen
International Journal of Molecular Sciences.2023; 24(10): 8638. CrossRef - Proteomic and immunoproteomic insights into the exoproteome of Actinobacillus pleuropneumoniae, the causative agent of porcine pleuropneumonia
Stelli G. Stancheva, Janna Frömbling, Elena L. Sassu, Isabel Hennig-Pauka, Andrea Ladinig, Wilhelm Gerner, Tom Grunert, Monika Ehling-Schulz
Microbial Pathogenesis.2022; 172: 105759. CrossRef - Genome-wide screening of lipoproteins in Actinobacillus pleuropneumoniae identifies three antigens that confer protection against virulent challenge
Yurou Cao, Lulu Gao, Li Zhang, Lixiang Zhou, Jihong Yang, Lingfu Deng, Jin Zhao, Chao Qi, Jinlin Liu
Scientific Reports.2020;[Epub] CrossRef - The roles of flp1 and tadD in Actinobacillus pleuropneumoniae pilus biosynthesis and pathogenicity
Tingting Li, Qiuhong Zhang, Rong Wang, Sihua Zhang, Jie Pei, Yaokun Li, Lu Li, Rui Zhou
Microbial Pathogenesis.2019; 126: 310. CrossRef - Recombinant ApxIV protein enhances protective efficacy againstActinobacillus pleuropneumoniaein mice and pigs
H.-C. Wu, P.-H. Yeh, K.-J. Hsueh, W.-J. Yang, C.-Y. Chu
Journal of Applied Microbiology.2018; 124(6): 1366. CrossRef - New trends in innovative vaccine development against Actinobacillus pleuropneumoniae
Abraham Loera-Muro, Carlos Angulo
Veterinary Microbiology.2018; 217: 66. CrossRef - A trivalent Apx-fusion protein delivered by E. coli outer membrane vesicles induce protection against Actinobacillus pleuropneumoniae of serotype 1 and 7 challenge in a murine model
Kui Xu, Qin Zhao, Xintian Wen, Rui Wu, Yiping Wen, Xiaobo Huang, Yong Huang, Qigui Yan, Xinfeng Han, Xiaoping Ma, Yung-Fu Chang, Sanjie Cao, Utpal Pal
PLOS ONE.2018; 13(1): e0191286. CrossRef - Identification and characterization of a novel stress-responsive outer membrane protein Lip40 from Actinobacillus pleuropneumoniae
Xuehe Hu, Hao Yan, Ke Liu, Jiansheng Hu, Chao Qi, Jihong Yang, Yanli Liu, Jin Zhao, Jinlin Liu
BMC Biotechnology.2015;[Epub] CrossRef - Comparative proteomic analysis of the membrane proteins of two Haemophilus parasuis strains to identify proteins that may help in habitat adaptation and pathogenesis
Luhua Zhang, Yiping Wen, Ying Li, Xingliang Wei, Xuefeng Yan, Xintian Wen, Rui Wu, Xiaobo Huang, Yong Huang, Qigui Yan, Mafeng Liu, Sanjie Cao
Proteome Science.2014;[Epub] CrossRef
- A New Quorum-Sensing Inhibitor Attenuates Virulence and Decreases Antibiotic Resistance in Pseudomonas aeruginosa
-
Yu-Xiang Yang , Zhen-Hua Xu , Yu-Qian Zhang , Jing Tian , Li-Xing Weng , Lian-Hui Wang
-
J. Microbiol. 2012;50(6):987-993. Published online December 30, 2012
-
DOI: https://doi.org/10.1007/s12275-012-2149-7
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347
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62
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Quorum sensing (QS) has been a novel target for the treatment of infectious diseases. Here structural analogs of Pseudomonas aeruginosa autoinducer N-acyl homoserine lactone (AHL) were investigated for QS inhibitor (QSI) activity
and a novel QSI was discovered, N-decanoyl-L-homoserine benzyl ester (C2). Virulence assays showed that C2 downregulated total protease and elastase activities, as well as the production of rhamnolipid, that are controlled by QS in P.
aeruginosa wild-type strain PAO1 without affecting growth. C2 was also shown to inhibit swarming motility of PAO1. Using a microdilution checkerboard method, we identified synergistic interactions between C2 and several antibiotics, tobramycin, gentamycin, cefepime, and meropenem. Data from real-time RT-PCR suggested that C2 inhibited the expression of lasR (29.67%), lasI (21.57%), rhlR (28.20%), and
rhlI (29.03%).
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Scientific Reports.2025;[Epub] CrossRef - Anti-QS Strategies Against Pseudomonas aeruginosa Infections
Abdelaziz Touati, Nasir Adam Ibrahim, Lilia Tighilt, Takfarinas Idres
Microorganisms.2025; 13(8): 1838. CrossRef - Detection of virulence factors in opportunistic bacteria: advances, challenges, and practical implementation
Igor Chebotar, Ilya Azizov, Mikhail Edelstein, Roman Kozlov
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Future Pharmacology.2025; 5(3): 35. CrossRef - Discovery of Melittin as Triple-Action Agent: Broad-Spectrum Antibacterial, Anti-Biofilm, and Potential Anti-Quorum Sensing Activities
Hongyan Yang, Rong Ma, Jiarou Chen, Qian Xie, Wenhui Luo, Pinghua Sun, Zheng Liu, Jialiang Guo
Molecules.2024; 29(3): 558. CrossRef - A Systematic Hierarchical Virtual Screening Model for RhlR Inhibitors Based on PCA, Pharmacophore, Docking, and Molecular Dynamics
Jiarui Du, Jiahao Li, Juqi Wen, Jun Liu, Haichuan Xiao, Antian Zhang, Dongdong Yang, Pinghua Sun, Haibo Zhou, Jun Xu
International Journal of Molecular Sciences.2024; 25(14): 8000. CrossRef - Quorum Sensing Inhibitors: An Alternative Strategy to Win the Battle against Multidrug-Resistant (MDR) Bacteria
Helal F. Hetta, Yasmin N. Ramadan, Zainab I. Rashed, Ahmad A. Alharbi, Shomokh Alsharef, Tala T. Alkindy, Alanoud Alkhamali, Abdullah S. Albalawi, Basem Battah, Matthew G. Donadu
Molecules.2024; 29(15): 3466. CrossRef - Reducing the virulence of Pseudomonas aeruginosa by using multiple quorum-quenching enzymes
Mst Afroza Khatun, Md Anarul Hoque, Mattheos Koffas, Yan Feng
Journal of Industrial Microbiology and Biotechnology.2023;[Epub] CrossRef - In silico anti-quorum sensing activities of phytocompounds of Psidium guajava in Salmonella enterica serovar Typhi
Temitope Deborah Olaniyi, Adewale Adetutu
Journal of Umm Al-Qura University for Applied Sciences.2023; 9(2): 142. CrossRef - Inhibition of Adherence and Biofilm Formation of Pseudomonas aeruginosa by Immobilized ZnO Nanoparticles on Silicone Urinary Catheter Grafted by Gamma Irradiation
Dalia A. Elzahaby, Hala A. Farrag, Rana R. Haikal, Mohamed H. Alkordi, Nourtan F. Abdeltawab, Mohammed A. Ramadan
Microorganisms.2023; 11(4): 913. CrossRef - Synergistic effect of propyl gallate and antibiotics against biofilms of Serratia marcescens and Erwinia carotovora in vitro
Jin-Wei Zhou, Peng-Cheng Ji, Chang-Yao Wang, Yu-Jie Yang, Xin-Yu Zhao, Hao-Zhe Tang, Shi-Rong Tang
LWT.2023; 173: 114258. CrossRef - The Molecular Architecture of Pseudomonas aeruginosa Quorum-Sensing Inhibitors
Qiaoqiang Li, Shen Mao, Hong Wang, Xinyi Ye
Marine Drugs.2022; 20(8): 488. CrossRef - Biofilm formation and inhibition mediated by bacterial quorum sensing
Yingsong Wang, Zeran Bian, Yan Wang
Applied Microbiology and Biotechnology.2022; 106(19-20): 6365. CrossRef - Quorum sensing inhibitors applications: A new prospect for mitigation of microbiologically influenced corrosion
Asma Lamin, Anna H. Kaksonen, Ivan S. Cole, Xiao-Bo Chen
Bioelectrochemistry.2022; 145: 108050. CrossRef - Evaluating the effect of antibiotics sub-inhibitory dose on Pseudomonas aeruginosaquorum sensing dependent virulence and its phenotypes
Fadilah Sfouq Aleanizy, Fulwah Y. Alqahtani, Esra Kamal Eltayb, Norah Alrumikan, Renad Almebki, Abdulaziz Alhossan, Thamer A. Almangour, Hajar AlQahtani
Saudi Journal of Biological Sciences.2021; 28(1): 550. CrossRef - Effect of Titanium Dioxide Nanoparticles on the Expression of Efflux Pump and Quorum-Sensing Genes in MDR Pseudomonas aeruginosa Isolates
Fatma Y. Ahmed, Usama Farghaly Aly, Rehab Mahmoud Abd El-Baky, Nancy G. F. M. Waly
Antibiotics.2021; 10(6): 625. CrossRef - Foodborne ESKAPE Biofilms and Antimicrobial Resistance: lessons Learned from Clinical Isolates
Amrita Patil, Rajashri Banerji, Poonam Kanojiya, Sunil D. Saroj
Pathogens and Global Health.2021; 115(6): 339. CrossRef - Effects of Gentamicin-Loaded Chitosan-ZnO Nanocomposite on Quorum-Sensing Regulation of Pseudomonas Aeruginosa
Fatemeh Hemmati, Reza Ghotaslou, Roya Salehi, Hossein Samadi Kafil, Alka Hasani, Pourya Gholizadeh, Roghayeh Nouri, Mohammad Ahangarzadeh Rezaee
Molecular Biotechnology.2021; 63(8): 746. CrossRef - Natural Product Rottlerin Derivatives Targeting Quorum Sensing
Dittu Suresh, Shekh Sabir, Tsz Tin Yu, Daniel Wenholz, Theerthankar Das, David StC. Black, Naresh Kumar
Molecules.2021; 26(12): 3745. CrossRef - Promotion effect of extracellular abiotic degradation of hexadecane by co-existence of oxalic acid in the culture medium of Pseudomonas aeruginosa NY3
Hongyun Nie, Maiqian Nie, Lei Wang, Zhenjun Diwu, Jian Zhang, Jing Chen, Ting Xiao
Environmental Technology & Innovation.2021; 22: 101415. CrossRef - Combined Treatment of 6-Gingerol Analog and Tobramycin for Inhibiting Pseudomonas aeruginosa Infections
So-Young Ham, Han-Shin Kim, Min Jee Jo, Jeong-Hoon Lee, Youngjoo Byun, Gang-Jee Ko, Hee-Deung Park, Amanda G. Oglesby
Microbiology Spectrum.2021;[Epub] CrossRef - Effects of a novel anti-biofilm peptide CRAMP combined with antibiotics on the formation of Pseudomonas aeruginosa biofilms
Yang Zhang, Xing He, Peng Cheng, Xiaofen Li, Shiyuan Wang, Jing Xiong, Hui Li, Zhiying Wang, Huashan Yi, Hongxu Du, Juan Liu, Hongwei Chen
Microbial Pathogenesis.2021; 152: 104660. CrossRef - 2-Heptylcyclopropane-1-Carboxylic Acid Disperses and Inhibits Bacterial Biofilms
Zoe L. Harrison, Rukhsana Awais, Michael Harris, Babatunde Raji, Brian C. Hoffman, Daniel L. Baker, Jessica Amber Jennings
Frontiers in Microbiology.2021;[Epub] CrossRef - Functionalized Chitosan Nanomaterials: A Jammer for Quorum Sensing
Moupriya Nag, Dibyajit Lahiri, Dipro Mukherjee, Ritwik Banerjee, Sayantani Garai, Tanmay Sarkar, Sujay Ghosh, Ankita Dey, Sougata Ghosh, Smaranika Pattnaik, Hisham Atan Edinur, Zulhisyam Abdul Kari, Siddhartha Pati, Rina Rani Ray
Polymers.2021; 13(15): 2533. CrossRef - Inhibitors of Bacterial Swarming Behavior
Sina Rütschlin, Thomas Böttcher
Chemistry – A European Journal.2020; 26(5): 964. CrossRef Quorum Quenching: A Potential Target for Antipseudomonal Therapy
Fatemeh Hemmati, Roya Salehi, Reza Ghotaslou, Hossein Samadi Kafil, Alka Hasani, Pourya Gholizadeh, Roghayeh Nouri, Mohammad Ahangarzadeh Rezaee
Infection and Drug Resistance.2020; Volume 13: 2989. CrossRef- Quercetin inhibits Pseudomonas aeruginosa biofilm formation via the vfr-mediated lasIR system
Jing Ouyang, Wei Feng, Xiaodan Lai, Yaling Chen, Xue Zhang, Li Rong, Fengjun Sun, Yaokai Chen
Microbial Pathogenesis.2020; 149: 104291. CrossRef - Sexual dimorphism in the microbiology of the CF ‘Gender Gap’: Estrogen modulation of Pseudomonas aeruginosa virulence
Jean Tyrrell, Brian J. Harvey
Steroids.2020; 156: 108575. CrossRef Comparative Study of Antibacterial Effects of Titanium Dioxide Nanoparticles Alone and in Combination with Antibiotics on MDR Pseudomonas aeruginosa Strains
Fatma Youssef, Usama Farghaly, Rehab M Abd El-Baky, Nancy Waly
International Journal of Nanomedicine.2020; Volume 15: 3393. CrossRef- Targeting Gut Microbial Biofilms—A Key to Hinder Colon Carcinogenesis?
Siang-Siang Chew, Loh Teng-Hern Tan, Jodi Woan-Fei Law, Priyia Pusparajah, Bey-Hing Goh, Nurul Syakima Ab Mutalib, Learn-Han Lee
Cancers.2020; 12(8): 2272. CrossRef - Antibiotics Application Strategies to Control Biofilm Formation in Pathogenic Bacteria
Fazlurrahman Khan, Dung T.N. Pham, Sandra F. Oloketuyi, Young-Mog Kim
Current Pharmaceutical Biotechnology.2020; 21(4): 270. CrossRef - Alternative approaches to treat bacterial infections: targeting quorum-sensing
Pipat Piewngam, Janice Chiou, Priyanka Chatterjee, Michael Otto
Expert Review of Anti-infective Therapy.2020; 18(6): 499. CrossRef - Quorum sensing pathways in Gram-positive and -negative bacteria: potential of their interruption in abating drug resistance
Shafiul Haque, Dinesh K. Yadav, Shekhar C. Bisht, Neelam Yadav, Vineeta Singh, Kashyap Kumar Dubey, Arshad Jawed, Mohd Wahid, Sajad Ahmad Dar
Journal of Chemotherapy.2019; 31(4): 161. CrossRef - Quorum Sensing: A Prospective Therapeutic Target for Bacterial Diseases
Qian Jiang, Jiashun Chen, Chengbo Yang, Yulong Yin, Kang Yao
BioMed Research International.2019; 2019: 1. CrossRef - Explication of the Potential of 2-Hydroxy-4-Methoxybenzaldehyde in Hampering Uropathogenic Proteus mirabilis Crystalline Biofilm and Virulence
Ravindran Durgadevi, Gurusamy Abirami, Rajaiah Alexpandi, Kumar Nandhini, Ponnuchamy Kumar, Santhiyagu Prakash, Arumugam Veera Ravi
Frontiers in Microbiology.2019;[Epub] CrossRef - Chlorogenic acid attenuates virulence factors and pathogenicity of Pseudomonas aeruginosa by regulating quorum sensing
Hong Wang, Weihua Chu, Chao Ye, Bruno Gaeta, Huimin Tao, Min Wang, Zheng Qiu
Applied Microbiology and Biotechnology.2019; 103(2): 903. CrossRef - Pseudomonas aeruginosa quorum sensing inhibition by clinical isolate Delftia tsuruhatensis 11304: involvement of N-octadecanoylhomoserine lactones
Milka Malešević, Flaviana Di Lorenzo, Brankica Filipić, Nemanja Stanisavljević, Katarina Novović, Lidija Senerovic, Natalija Polović, Antonio Molinaro, Milan Kojić, Branko Jovčić
Scientific Reports.2019;[Epub] CrossRef - Pathway-Centric Structure-Based Multi-Target Compound Screening for Anti-Virulence Drug Repurposing
Li Xie, Lei Xie
International Journal of Molecular Sciences.2019; 20(14): 3504. CrossRef - Negative-Pressure Wound Therapy in aPseudomonas aeruginosaInfection Model
Guoqi Wang, Zhirui Li, Tongtong Li, Song Wang, Lihai Zhang, Licheng Zhang, Peifu Tang
BioMed Research International.2018; 2018: 1. CrossRef - Negative pressure wound therapy reduces the motility of Pseudomonas aeruginosa and enhances wound healing in a rabbit ear biofilm infection model
Wang Guoqi, Li Zhirui, Wang Song, Li Tongtong, Zhang Lihai, Zhang Licheng, Tang Peifu
Antonie van Leeuwenhoek.2018; 111(9): 1557. CrossRef - Pseudomonas aeruginosa Quorum Sensing Systems as Drug Discovery Targets: Current Position and Future Perspectives
Fadi Soukarieh, Paul Williams, Michael J Stocks, Miguel Cámara
Journal of Medicinal Chemistry.2018; 61(23): 10385. CrossRef - Can the quorum sensing inhibitor resveratrol function as an aminoglycoside antibiotic accelerant against Pseudomonas aeruginosa ?
Jin-Wei Zhou, Tong-Tong Chen, Xiao-Juan Tan, Ji-Yang Sheng, Ai-Qun Jia
International Journal of Antimicrobial Agents.2018; 52(1): 35. CrossRef - Developments in strategies for Quorum Sensing virulence factor inhibition to combat bacterial drug resistance
Shafiul Haque, Faraz Ahmad, Sajad A. Dar, Arshad Jawed, Raju K. Mandal, Mohd Wahid, Mohtashim Lohani, Saif Khan, Vineeta Singh, Naseem Akhter
Microbial Pathogenesis.2018; 121: 293. CrossRef - Phytochemicals from Camellia nitidissima Chi Flowers Reduce the Pyocyanin Production and Motility of Pseudomonas aeruginosa PAO1
Rui Yang, Ying Guan, Jinwei Zhou, Bing Sun, Zhennan Wang, Hongjuan Chen, Zhaochun He, Aiqun Jia
Frontiers in Microbiology.2018;[Epub] CrossRef - Autoinducer-2 Facilitates Pseudomonas aeruginosa PAO1 Pathogenicity in Vitro and in Vivo
Hongdong Li, Xingyuan Li, Chao Song, Yunhui Zhang, Zhengli Wang, Zhenqiu Liu, Hong Wei, Jialin Yu
Frontiers in Microbiology.2017;[Epub] CrossRef - Impact of phenolic compounds in the acyl homoserine lactone-mediated quorum sensing regulatory pathways
Md. Akil Hossain, Seung-Jin Lee, Na-Hye Park, Abraham Fikru Mechesso, Biruk Tesfaye Birhanu, JeongWoo Kang, Md. Ahsanur Reza, Joo-Won Suh, Seung-Chun Park
Scientific Reports.2017;[Epub] CrossRef - 1H NMR-Based Global Metabolic Studies of Pseudomonas aeruginosa upon Exposure of the Quorum Sensing Inhibitor Resveratrol
Tongtong Chen, Jiyang Sheng, Yonghong Fu, Minghui Li, Junsong Wang, Ai-Qun Jia
Journal of Proteome Research.2017; 16(2): 824. CrossRef - Escherichia Coli: Characteristics of Carbapenem Resistance and Virulence Factors
Esra Deniz Candan, Nilüfer Aksöz
Brazilian Archives of Biology and Technology.2017;[Epub] CrossRef - (S,E)-2-hydroxy-N-(2-hydroxy-5-nitrobenzylidene) propane hydrazide as a quorum sensing inhibitor of Pseudomonas aeruginosa
Azam Heidari, Fakhri Haghi, Nader Noshiranzadeh, Rahman Bikas
Medicinal Chemistry Research.2017; 26(9): 1947. CrossRef - Inhibition of Pseudomonas aeruginosa quorum sensing by subinhibitory concentrations of curcumin with gentamicin and azithromycin
Shahin Bahari, Habib Zeighami, Hesam Mirshahabi, Shekoufeh Roudashti, Fakhri Haghi
Journal of Global Antimicrobial Resistance.2017; 10: 21. CrossRef - Quercetin is an effective inhibitor of quorum sensing, biofilm formation and virulence factors in Pseudomonas aeruginosa
J. Ouyang, F. Sun, W. Feng, Y. Sun, X. Qiu, L. Xiong, Y. Liu, Y. Chen
Journal of Applied Microbiology.2016; 120(4): 966. CrossRef - Effect of Negative Pressure on Proliferation, Virulence Factor Secretion, Biofilm Formation, and Virulence-Regulated Gene Expression ofPseudomonas aeruginosaIn Vitro
Guo-Qi Wang, Tong-Tong Li, Zhi-Rui Li, Li-Cheng Zhang, Li-Hai Zhang, Li Han, Pei-Fu Tang
BioMed Research International.2016; 2016: 1. CrossRef - Autoinducer-2 of Streptococcus mitis as a Target Molecule to Inhibit Pathogenic Multi-Species Biofilm Formation In Vitro and in an Endotracheal Intubation Rat Model
Zhengli Wang, Qingqing Xiang, Ting Yang, Luquan Li, Jingli Yang, Hongong Li, Yu He, Yunhui Zhang, Qi Lu, Jialin Yu
Frontiers in Microbiology.2016;[Epub] CrossRef - The Gut Microbiome: A New Frontier for Alcohol Investigation
Gail A. Cresci
Alcoholism: Clinical and Experimental Research.2015; 39(6): 947. CrossRef - Agents that Inhibit Bacterial Biofilm Formation
Nira Rabin, Yue Zheng, Clement Opoku-Temeng, Yixuan Du, Eric Bonsu, Herman O Sintim
Future Medicinal Chemistry.2015; 7(5): 647. CrossRef - Autoinducer-2 regulates Pseudomonas aeruginosa PAO1 biofilm formation and virulence production in a dose-dependent manner
Hongdong Li, Xingyuan Li, Zhengli Wang, Yakun Fu, Qing Ai, Ying Dong, Jialin Yu
BMC Microbiology.2015;[Epub] CrossRef - Role of quorum sensing in bacterial infections
Israel Castillo-Juárez, Toshinari Maeda, Edna Ayerim Mandujano-Tinoco, María Tomás, Berenice Pérez-Eretza, Silvia Julieta García-Contreras, Thomas K Wood, Rodolfo García-Contreras
World Journal of Clinical Cases.2015; 3(7): 575. CrossRef - Protective role of gut commensal microbes against intestinal infections
My Young Yoon, Keehoon Lee, Sang Sun Yoon
Journal of Microbiology.2014; 52(12): 983. CrossRef - Isolation of the Autoinducer-Quenching Strain that Inhibits LasR in Pseudomonas aeruginosa
Lixing Weng, Yuqian Zhang, Yuxiang Yang, Lianhui Wang
International Journal of Molecular Sciences.2014; 15(4): 6328. CrossRef - A new synthetic ligand that activates QscR and blocks antibiotic-tolerant biofilm formation in Pseudomonas aeruginosa
Li-Xing Weng, Yu-Xiang Yang, Yu-Qian Zhang, Lian-Hui Wang
Applied Microbiology and Biotechnology.2014; 98(6): 2565. CrossRef - Development of Quorum-Based Anti-Virulence Therapeutics Targeting Gram-Negative Bacterial Pathogens
Song Tay, Wen Yew
International Journal of Molecular Sciences.2013; 14(8): 16570. CrossRef - Choosing an Appropriate Infection Model to Study Quorum Sensing Inhibition in Pseudomonas Infections
Evelina Papaioannou, Putri Utari, Wim Quax
International Journal of Molecular Sciences.2013; 14(9): 19309. CrossRef
- Catabolite Control Protein A of Streptococcus suis Type 2 Contributes to Sugar Metabolism and Virulence
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Yulong Tang , Wei Wu , Xiaoyan Zhang , Zhongyan Lu , Jianshun Chen , Weihuan Fang
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J. Microbiol. 2012;50(6):994-1002. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2035-3
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Abstract
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Catabolite control protein A (CcpA) is the major transcriptional regulator in carbon catabolite repression in several Gram-positive bacteria. We attempted to characterize the role of a CcpA homologue of Streptococcus suis type 2 in sugar
metabolism and virulence. Addition of glucose or sucrose to the defined medium significantly reduced the activity of raffinose-inducible α-galactosidase, cellobiose-inducible β-glucosidase, and maltose-inducible α-glucosidase of the wildtype
strain by about 9, 4, and 2-3 fold, respectively. Deletion of ccpA substantially derepressed the effects of repressing sugars on α-galactosidase or β-glucosidase activity. The ccpA deletion mutant showed reduced expression of virulence genes sly and eno (P<0.05), decreased adhesion to and invasion into endothelial cells (P<0.05), and attenuated virulence to mice with significant reduction of death rate and bacterial burden in organs, as compared to the wild-type strain. Both the in vitro and in vivo defect phenotypes were reversible by ccpA complementation. Thus, this study shows that CcpA of S. suis type 2 plays an important role in carbon catabolite repression and virulence.
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Citations
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- Thioredoxin C of Streptococcus suis serotype 2 contributes to virulence by inducing antioxidative stress and inhibiting autophagy via the MSR1/PI3K-Akt-mTOR pathway in macrophages
Chunxiao Ji, Yanying Pan, Bocheng Liu, Jianying Liu, Chijun Zhao, Zhuyuan Nie, Simeng Liao, Guangwei Kuang, Xin Wu, Quan Liu, Jie Ning, Yulong Tang, Lihua Fang
Veterinary Microbiology.2024; 298: 110263. CrossRef - Ultrasound-assisted extraction of emodin from Rheum officinale Baill and its antibacterial mechanism against Streptococcus suis based on CcpA
Jingwen Bai, Yu Xie, Miao Li, Xianjun Huang, Yujia Guo, Jingwen Sun, Yang Tang, Xuantong Liu, Chi Wei, Jianqiang Li, Yu Yang
Ultrasonics Sonochemistry.2024; 102: 106733. CrossRef - Thioredoxin A of Streptococcus suis Serotype 2 Contributes to Virulence by Inhibiting the Expression of Pentraxin 3 to Promote Survival Within Macrophages
Chijun Zhao, Xinglin Jia, Yanying Pan, Simeng Liao, Shuo Zhang, Chunxiao Ji, Guangwei Kuang, Xin Wu, Quan Liu, Yulong Tang, Lihua Fang
Journal of Microbiology.2023; 61(4): 433. CrossRef - Role of Metabolic Adaptation of Streptococcus suis to Host Niches in Bacterial Fitness and Virulence
Muriel Dresen, Peter Valentin-Weigand, Yenehiwot Berhanu Weldearegay
Pathogens.2023; 12(4): 541. CrossRef - The biological role of MutT in the pathogenesis of the zoonotic pathogen Streptococcus suis serotype 2
Quan Li, Xia Fei, Yuhang Zhang, Genglin Guo, Huoying Shi, Wei Zhang
Virulence.2021; 12(1): 1538. CrossRef - Identification of conditionally essential genes for Streptococcus suis infection in pigs
Jesús Arenas, Aldert Zomer, Jose Harders-Westerveen, Hester J. Bootsma, Marien I. De Jonge, Norbert Stockhofe-Zurwieden, Hilde E. Smith, Astrid De Greeff
Virulence.2020; 11(1): 446. CrossRef - ICESsuHN105, a Novel Multiple Antibiotic Resistant ICE in Streptococcus suis Serotype 5 Strain HN105
Yinchu Zhu, Yue Zhang, Jiale Ma, Wenyang Dong, Xiaojun Zhong, Zihao Pan, Huochun Yao
Frontiers in Microbiology.2019;[Epub] CrossRef - Design and development of a “Y-shaped” microbial consortium capable of simultaneously utilizing biomass sugars for efficient production of butanol
Chunhua Zhao, Jean Paul Sinumvayo, Yanping Zhang, Yin Li
Metabolic Engineering.2019; 55: 111. CrossRef - The VraSR regulatory system contributes to virulence in Streptococcus suis via resistance to innate immune defenses
Peixi Chang, Weitian Li, Guolin Shi, Huan Li, Xiaoqing Yang, Zechen Xia, Yuan Ren, Zhiwei Li, Huanchun Chen, Weicheng Bei
Virulence.2018; 9(1): 771. CrossRef - Streptococcus suis DivIVA Protein Is a Substrate of Ser/Thr Kinase STK and Involved in Cell Division Regulation
Hua Ni, Weiwei Fan, Chaolong Li, Qianqian Wu, Hongfen Hou, Dan Hu, Feng Zheng, Xuhui Zhu, Changjun Wang, Xiangrong Cao, Zhu-Qing Shao, Xiuzhen Pan
Frontiers in Cellular and Infection Microbiology.2018;[Epub] CrossRef - Regulation of the β-hemolysin gene cluster of Streptococcus anginosus by CcpA
Richard Bauer, Stefanie Mauerer, Barbara Spellerberg
Scientific Reports.2018;[Epub] CrossRef - Enhanced Production of Polymyxin E in Paenibacillus polymyxa by Replacement of Glucose by Starch
Zhiliang Yu, Zhongqi Sun, Jianhua Yin, Juanping Qiu
BioMed Research International.2018; 2018: 1. CrossRef - Role of two-component regulatory systems in the virulence of Streptococcus suis
Chengkun Zheng, Lingzhi Li, Haojie Ge, Hongmei Meng, Yang Li, Weicheng Bei, Xiaohui Zhou
Microbiological Research.2018; 214: 123. CrossRef - Streptococcus suis small RNA rss04 contributes to the induction of meningitis by regulating capsule synthesis and by inducing biofilm formation in a mouse infection model
Genhui Xiao, Huanyu Tang, Shouming Zhang, Haiyan Ren, Jiao Dai, Liying Lai, Chengping Lu, Huochun Yao, Hongjie Fan, Zongfu Wu
Veterinary Microbiology.2017; 199: 111. CrossRef - Stress Physiology of Lactic Acid Bacteria
Konstantinos Papadimitriou, Ángel Alegría, Peter A. Bron, Maria de Angelis, Marco Gobbetti, Michiel Kleerebezem, José A. Lemos, Daniel M. Linares, Paul Ross, Catherine Stanton, Francesca Turroni, Douwe van Sinderen, Pekka Varmanen, Marco Ventura, Manuel Z
Microbiology and Molecular Biology Reviews.2016; 80(3): 837. CrossRef - Superoxide dismutase of Streptococcus suis serotype 2 plays a role in anti-autophagic response by scavenging reactive oxygen species in infected macrophages
Lihua Fang, Hongxia Shen, Yulong Tang, Weihuan Fang
Veterinary Microbiology.2015; 176(3-4): 328. CrossRef - Investigation into the role of catabolite control protein A in the metabolic regulation of Streptococcus suis serotype 2 using gene expression profile analysis
XULONG LANG, ZHONGHAI WAN, YING PAN, XIURAN WANG, XIAOXU WANG, ZHAOYANG BU, JING QIAN, HUAZONG ZENG, XINGLONG WANG
Experimental and Therapeutic Medicine.2015; 10(1): 127. CrossRef - Two Spx Regulators Modulate Stress Tolerance and Virulence in Streptococcus suis Serotype 2
Chengkun Zheng, Jiali Xu, Jinquan Li, Luohong Hu, Jiandong Xia, Jingyan Fan, Weina Guo, Huanchun Chen, Weicheng Bei, José A. Lemos
PLoS ONE.2014; 9(9): e108197. CrossRef - Streptococcus suisinfection
Youjun Feng, Huimin Zhang, Zuowei Wu, Shihua Wang, Min Cao, Dan Hu, Changjun Wang
Virulence.2014; 5(4): 477. CrossRef - CcpA Is Important for Growth and Virulence of Enterococcus faecium
Sudha R. Somarajan, Jung H. Roh, Kavindra V. Singh, George M. Weinstock, Barbara E. Murray, L. Pirofski
Infection and Immunity.2014; 82(9): 3580. CrossRef - RNA-seq analysis of the influence of anaerobiosis and FNR on Shigella flexneri
Marta Vergara-Irigaray, Maria C Fookes, Nicholas R Thomson, Christoph M Tang
BMC Genomics.2014;[Epub] CrossRef - Streptococcus suis Type 2 SSU0587 Protein is a Beta-Galactosidase That Contributes to Bacterial Adhesion but Not to Virulence in Mice
Yulong TANG, Xiaoyan ZHANG, Yulong YIN, Philip R. HARDWIDGE, Weihuan FANG
Journal of Veterinary Medical Science.2014; 76(7): 1055. CrossRef - Catabolite control protein A is an important regulator of metabolism in Streptococcus suis type 2
XULONG LANG, ZHONGHAI WAN, ZHAOYANG BU, XIURAN WANG, XIAOXU WANG, LINGWEI ZHU, JIAYU WAN, YANG SUN, XINGLONG WANG
Biomedical Reports.2014; 2(5): 709. CrossRef
- Immunoprophylactic Effects of Shiitake Mushroom (Lentinula edodes) against Bordetella bronchiseptica in Mice
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Bock-Gie Jung , Jin-A Lee , Bong-Joo Lee
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J. Microbiol. 2012;50(6):1003-1008. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2365-1
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250
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Abstract
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Antimicrobials are used as feed additives to improve growth performance and to prevent subclinical disease challenge in industrial animals. However, these drugs can lead to the development of resistant strains of bacteria. Shiitake mushrooms
(SM) (Lentinula edodes) have long been popular as a health food in East Asia. Moreover, SM-derived polysaccharides are well-known as immunostimulants that possess antimicrobial properties. The aim of the present study was to evaluate the immunoprophylactic effects of SM against Bordetella bronchiseptica infection in mice as an initial step towards the development of eco-friendly feed additives to reduce the use of antimicrobials. Although SM had no effect on body weight gain under the un-infected conditions, SM alleviated progressive weight loss and helped in the recovery of body weight in B. bronchiseptica infected mice. Dietary supplementation with SM reinforced bacterial clearance in the infected mice. Of note, SM markedly increased the percentage of various T lymphocytes and the relative mRNA
expression levels of tumor necrosis factor-α and interferon-γ in the bronchial lymph node early in the infection. Taken together, these findings suggest that SM could help in the improvement of body weight gain during B. bronchiseptica infection and may enhance the protective immune activity against a subclinical disease challenge, such as B. bronchiseptica infection in mice, probably by a strong stimulation of non-specific immune responses. Hence, SM may provide an alternative to reduce use of antimicrobials. Confirmation of the beneficial effects of SM as a feed additive is now required in industrial animals.
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Citations
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- Immunomodulating Effects of Fungal Beta-Glucans: From Traditional Use to Medicine
Hidde P. van Steenwijk, Aalt Bast, Alie de Boer
Nutrients.2021; 13(4): 1333. CrossRef - A new lanostane triterpenoid from Ganoderma resinaceum
Qiaofen Yang, Kejun He, Shiyu Qiu, Aoyi Zheng, Qiuyue Hu, Zuhong Ma, Miao Dong, Min Zhou
Journal of Asian Natural Products Research.2020; 22(11): 1095. CrossRef - Microbiome Analysis Investigating the Impacts of Fermented Spent Mushroom Substrates on the Composition of Microbiota in Weaned Piglets Hindgut
Qien Qi, Qiaoli Peng, Min Tang, Dongling Chen, Huihua Zhang
Frontiers in Veterinary Science.2020;[Epub] CrossRef - The effect and mechanism of ultrasonic treatment on the postharvest texture of shiitake mushrooms (Lentinula edodes)
Zhendan Ni, Shixiang Xu, Tiejin Ying
International Journal of Food Science & Technology.2018; 53(8): 1847. CrossRef - Purification and identification of a polysaccharide from medicinal mushroomAmauroderma rudewith immunomodulatory activity and inhibitory effect on tumor growth
Honghui Pan, Yuanyuan Han, Jiguo Huang, Xiongtao Yu, Chunwei Jiao, Xiaobing Yang, Preet Dhaliwal, Yizhen Xie, Burton B. Yang
Oncotarget.2015; 6(19): 17777. CrossRef
- Characterization of Cellulases of Fungal Endophytes Isolated from Espeletia spp.
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Luisa Cabezas , Carolina Calderon , Luis Miguel Medina , Isabela Bahamon , Martha Cardenas , Adriana Jimena Bernal , Andrés Gonzalez , Silvia Restrepo
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J. Microbiol. 2012;50(6):1009-1013. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2130-5
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173
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Endophytes are microorganisms that asymptomatically invade plant tissues. They can stimulate plant growth and/or provide defense against pathogen attacks through the production of secondary metabolites. Most endophyte species are still unknown, and because they may have several applications, the study of their metabolic capabilities is essential. We characterized 100 endophytes isolated from Espeletia
spp., a genus unique to the paramo ecosystem, an extreme environment in the Andean mountain range. We evaluated the cellulolytic potential of these endophytes on the saccharification of the oil palm empty fruit bunch (OPEFB). The total cellulolytic activity was measured for each endophyte on filter paper (FPA). In addition, the specific carboxymethyl cellulase (CMCase), exoglucanase, and β-glucosidase activities were determined. We found four fungi positive for cellulases.
Of these fungi, Penicillium glabrum had the highest cellulolytic activity after partial purification, with maximal CMCase, exoglucanase and β-glucosidase enzyme activities of 44.5, 48.3, and 0.45 U/ml, respectively. Our data showed that the
bioprospection of fungi and the characterization of their enzymes may facilitate the process of biofuel production.
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Industrial Crops and Products.2024; 209: 117964. CrossRef - Paraphoma chrysanthemicola Affects the Carbohydrate and Lobetyolin Metabolism Regulated by Salicylic Acid in the Soilless Cultivation of Codonopsis pilosula
Wenbin Sun, Caiming Luo, Yamiao Wu, Miao Ding, Min Feng, Feifan Leng, Yonggang Wang
Biology.2024; 13(6): 408. CrossRef - Towards further understanding the applications of endophytes: enriched source of bioactive compounds and bio factories for nanoparticles
Nisha Choudhary, Naveen Dhingra, Amel Gacem, Virendra Kumar Yadav, Rakesh Kumar Verma, Mahima Choudhary, Uma Bhardwaj, Rajendra Singh Chundawat, Mohammed S. Alqahtani, Rajarshi Kumar Gaur, Lienda Bashier Eltayeb, Waleed Al Abdulmonem, Byong-Hun Jeon
Frontiers in Plant Science.2023;[Epub] CrossRef - Isolation and characterization of a mesophilic cellulolytic endophyte Preussia africana from Juniperus oxycedrus
Loubna Seddouk, Latifa Jamai, Karima Tazi, Mohamed Ettayebi, Mohammed Alaoui-Mhamdi, Lotfi Aleya, Abellatif Janati-Idrissi
Environmental Science and Pollution Research.2022; 29(30): 45589. CrossRef - Application of enzyme-assisted extraction of baicalin from Scutellaria baicalensis Georgi
Xiao-Di Ma, Xin-Guo Zhang, Si-Jia Guo, Guo-Yan Ma, Wen-Jie Liu, Nan Wang, Ming Feng, Yu Su
Preparative Biochemistry & Biotechnology.2021; 51(3): 241. CrossRef - Endophytic Penicillium species and their agricultural, biotechnological, and pharmaceutical applications
Rufin Marie Kouipou Toghueo, Fabrice Fekam Boyom
3 Biotech.2020;[Epub] CrossRef - Response of psychrophilic plant endosymbionts to experimental temperature increase
Carolina Seas, Priscila Chaverri
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Xin-Guo Zhang, Ying Lu, Wen-Na Wang, Zi-Yu Liu, Jin-Wen Liu, Xiao-Qian Chen
Scientific Reports.2017;[Epub] CrossRef - Isolation and characterization of trichalasin-producing endophytic fungus from Taxus baccata
Mondem Vasundhara, Manoj Baranwal, Nallapeta Sivaramaiah, Anil Kumar
Annals of Microbiology.2017; 67(3): 255. CrossRef - Microbial and Functional Diversity within the Phyllosphere of Espeletia Species in an Andean High-Mountain Ecosystem
Carlos A. Ruiz-Pérez, Silvia Restrepo, María Mercedes Zambrano, V. Müller
Applied and Environmental Microbiology.2016; 82(6): 1807. CrossRef - Endophytic fungi: expanding the arsenal of industrial enzyme producers
Rúbia Carvalho Gomes Corrêa, Sandro Augusto Rhoden, Thatiane Rodrigues Mota, João Lúcio Azevedo, João Alencar Pamphile, Cristina Giatti Marques de Souza, Maria de Lourdes Teixeira de Moraes Polizeli, Adelar Bracht, Rosane Marina Peralta
Journal of Industrial Microbiology and Biotechnology.2014; 41(10): 1467. CrossRef - Yield increase induced by the fungal root endophyte Piriformospora indica in barley grown at low temperature is nutrient limited
Brian R. Murphy, Fiona M. Doohan, Trevor R. Hodkinson
Symbiosis.2014; 62(1): 29. CrossRef
- Screening of Mutant Strain Streptomyces mediolani sp. AC37 for (-)-8-O-Methyltetrangomycin Production Enhancement
-
Jakeline Trejos Jiménez , Maria Sturdíková , Vlasta Brezová , Emil Svajdlenka , Marta Novotová
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J. Microbiol. 2012;50(6):1014-1023. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2025-5
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Streptomyces mediolani sp. AC37 was isolated from the root system of higher plant Taxus baccata and produced metabolite identified as (-)-8-O-methyltetrangomycin according to LC/MS/MS analysis. In our screening program for improvements
of bioactive secondary metabolites from plant associate streptomycetes, mutation was used as a tool for the induction of genetic variations for selection of higher (-)-8-O-methyltetrangomycin producers of isolates. S. mediolani sp. AC37 was treated with UV irradiation and chemical mutagenic treatment (N-nitroso-N-methyl-urea). The radical scavenging and antioxidant capacity of (-)-8-O-methyltetrangomycin
and extracts isolated from mutants were tested using EPR spin trapping technique and ABTS+ assay. Comparison of electron microscopic images of Streptomyces sp. AC37 and mutant strains of Streptomyces sp. AC37 revealed substantial differences in morphology and ultrastructure.
-
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Angucyclinones rescue PhLOPS
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antibiotic activity by inhibiting Cfr-dependent antibiotic resistance
Adam J. Schaenzer, Annia Rodriguez Hernandez, Kaitlyn Tsai, Christian Hobson, Danica Galonić Fujimori, Gerard D. Wright, Steven J. Projan
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Aram R. Ali, Yadollah Bahrami, Elham Kakaei, Sara Mohammadzadeh, Sasan Bouk, Nastaran Jalilian
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Aida Sarmiento-Vizcaíno, Jesús Martín, Francisco Javier Ortiz-López, Fernando Reyes, Luis A. García, Gloria Blanco
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Jeysson Sánchez-Suárez, Ericsson Coy-Barrera, Luisa Villamil, Luis Díaz
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Wei Tang, Wei Tang, Yongjun Fei, Mezni Ali
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Fitoterapia.2015; 103: 213. CrossRef
- Enhancement of Butanol Tolerance and Butanol Yield in Clostridium acetobutylicum Mutant NT642 Obtained by Nitrogen Ion Beam Implantation
-
Xiao-Bo Liu , Qiu-Ya Gu , Xiao-Bin Yu , Wei Luo
-
J. Microbiol. 2012;50(6):1024-1028. Published online December 30, 2012
-
DOI: https://doi.org/10.1007/s12275-012-2289-9
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220
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As a promising alternative biofuel, biobutanol can be produced through acetone/butanol/ethanol (ABE) fermentation. Currently, ABE fermentation is still a small-scale industry due to its low production and high input cost. Moreover,
butanol toxicity to the Clostridium fermentation host limits the accumulation of butanol in the fermentation broth. The wild-type Clostridium acetobutylicum D64 can only produce about 13 g butanol/L and tolerates less than 2% (v/v) butanol. To improve the tolerance of C. acetobutylicum D64 for enhancing the production of butanol, nitrogen ion beam implantation was employed and finally five mutants with enhanced butanol tolerance were obtained. Among these, the most butanol tolerant mutant C. acetobutylicum NT642 can tolerate above 3% (v/v) butanol while the wide-type strain
can only withstand 2% (v/v). In batch fermentation, the production of butanol and ABE yield of C. acetobutylicum NT642 was 15.4 g/L and 22.3 g/L, respectively, which were both higher than those of its parental strain and the other mutants using corn or cassava as substrate. Enhancing butanol tolerance is a great precondition for obtaining a hyperyield producer. Nitrogen ion beam implantation could be a
promising biotechnology to improve butanol tolerance and production of the host strain C. acetobutylicum.
-
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Elie R. Chalhoub, Joanne M. Belovich
Results in Engineering.2024; 22: 102366. CrossRef - Biobutanol production from underutilized substrates using Clostridium: Unlocking untapped potential for sustainable energy development
Devina Syifa Nabila, Rosamond Chan, Rizky Riscahya Pratama Syamsuri, Puspita Nurlilasari, Wan Abd Al Qadr Imad Wan-Mohtar, Abdullah Bilal Ozturk, Nia Rossiana, Febri Doni
Current Research in Microbial Sciences.2024; 7: 100250. CrossRef - Current progress on engineering microbial strains and consortia for production of cellulosic butanol through consolidated bioprocessing
Angela Re, Roberto Mazzoli
Microbial Biotechnology.2023; 16(2): 238. CrossRef - A critical review on biofilm-based reactor systems for enhanced syngas fermentation processes
Burcu Gunes
Renewable and Sustainable Energy Reviews.2021; 143: 110950. CrossRef - Proteomic Analysis Identifies Dysregulated Proteins in Butanol-Tolerant Gram-Positive Lactobacillus mucosae BR0713–33
Siqing Liu, Nasib Qureshi, Kenneth Bischoff, Costel C. Darie
ACS Omega.2021; 6(5): 4034. CrossRef - How to outwit nature: Omics insight into butanol tolerance
Alexander Arsov, Kaloyan Petrov, Penka Petrova
Biotechnology Advances.2021; 46: 107658. CrossRef - Role of efflux in enhancing butanol tolerance of bacteria
Maryna Vasylkivska, Petra Patakova
Journal of Biotechnology.2020; 320: 17. CrossRef - Effect of fermented sausages with probiotic Enterococcus faecium CRL 183 on gut microbiota using dynamic colonic model
Mariana Nougalli Roselino, Isabel Kimiko Sakamoto, Maria Angela Tallarico Adorno, Josiane Maria Márcia Canaan, Graciela Font de Valdez, Elizeu Antonio Rossi, Katia Sivieri, Daniela Cardoso Umbelino Cavallini
LWT.2020; 132: 109876. CrossRef - Enhancement of Butanol Production: From Biocatalysis to Bioelectrocatalysis
Xiaobo Liu, Xiaobin Yu
ACS Energy Letters.2020; 5(3): 867. CrossRef - “Saddle-shaped” dose-survival effect, is it a general and valuable phenomenon in microbes in response to heavy ion beam irradiation?
Xiaopeng Guo, Miaomiao Zhang, Yue Gao, Wenjian Li, Dong Lu
Annals of Microbiology.2019; 69(3): 221. CrossRef - A genome-wide view of mutations in respiration-deficient mutants of Saccharomyces cerevisiae selected following carbon ion beam irradiation
Xiaopeng Guo, Miaomiao Zhang, Yue Gao, Guozhen Cao, Yang Yang, Dong Lu, Wenjian Li
Applied Microbiology and Biotechnology.2019; 103(4): 1851. CrossRef - In situ biobutanol recovery from clostridial fermentations: a critical review
Pablo Jiménez-Bonilla, Yi Wang
Critical Reviews in Biotechnology.2018; 38(3): 469. CrossRef - Microalgae for biobutanol production – Technology evaluation and value proposition
Tong Kai Yeong, Kailin Jiao, Xianhai Zeng, Lu Lin, Sharadwata Pan, Michael K. Danquah
Algal Research.2018; 31: 367. CrossRef - Genomic, Transcriptional, and Phenotypic Analysis of the Glucose Derepressed Clostridium beijerinckii Mutant Exhibiting Acid Crash Phenotype
Seung‐Oh Seo, Holger Janssen, Andrew Magis, Yi Wang, Ting Lu, Nathan D. Price, Yong‐Su Jin, Hans P. Blaschek
Biotechnology Journal.2017;[Epub] CrossRef - Progress and perspectives on improving butanol tolerance
Siqing Liu, Nasib Qureshi, Stephen R. Hughes
World Journal of Microbiology and Biotechnology.2017;[Epub] CrossRef - Genetic Engineering In BioButanol Production And Tolerance
Ashok Rao, A. Sathiavelu, S. Mythili
Brazilian Archives of Biology and Technology.2016;[Epub] CrossRef - Ex situ product recovery for enhanced butanol production by Clostridium beijerinckii
Sang-Hyun Lee, Moon-Ho Eom, Jin-Dal-Rae Choi, Sooah Kim, Jungyeon Kim, Yong-An Shin, Kyoung Heon Kim
Bioprocess and Biosystems Engineering.2016; 39(5): 695. CrossRef - n-butanol: challenges and solutions for shifting natural metabolic pathways into a viable microbial production
Paola Branduardi, Danilo Porro, Michael Sauer
FEMS Microbiology Letters.2016; 363(8): fnw070. CrossRef - High-Level Butanol Production from Cassava Starch by a Newly Isolated Clostridium acetobutylicum
Shubo Li, Yuan Guo, Fuzhi Lu, Jiajian Huang, Zongwen Pang
Applied Biochemistry and Biotechnology.2015; 177(4): 831. CrossRef - Metabolic engineering of Clostridium acetobutylicum for butyric acid production with high butyric acid selectivity
Yu-Sin Jang, Jung Ae Im, So Young Choi, Jung Im Lee, Sang Yup Lee
Metabolic Engineering.2014; 23: 165. CrossRef - Application of new metabolic engineering tools for Clostridium acetobutylicum
Tina Lütke-Eversloh
Applied Microbiology and Biotechnology.2014; 98(13): 5823. CrossRef - Integrated butanol recovery for an advanced biofuel: current state and prospects
Chuang Xue, Jing-Bo Zhao, Li-Jie Chen, Feng-Wu Bai, Shang-Tian Yang, Jian-Xin Sun
Applied Microbiology and Biotechnology.2014; 98(8): 3463. CrossRef - Enhancing butanol tolerance and preventing degeneration in Clostridium acetobutylicum by 1-butanol–glycerol storage during long-term preservation
Xiaobo Liu, Qiuya Gu, Chunli Liao, Xiaobin Yu
Biomass and Bioenergy.2014; 69: 192. CrossRef
- Expression and Characterization of an Iron-Containing Superoxide Dismutase from Burkholderia pseudomallei
-
Min-Hee Cho , Yong-Woo Shin , Jeong-Hoon Chun , Kee-Jong Hong , Byoung-Kuk Na , Gi-eun Rhie , Baik-Lin Seong , Cheon-Kwon Yoo
-
J. Microbiol. 2012;50(6):1029-1033. Published online December 30, 2012
-
DOI: https://doi.org/10.1007/s12275-012-2267-2
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262
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A superoxide dismutase (SOD) gene from Burkholderia pseudomallei, the causative agent of melioidosis, was cloned and expressed in Escherichia coli, and its product was functionally and physically characterized. The gene has an open-reading
frame of 579 bp. The deduced amino acid sequence has 192 residues with a calculated molecular mass of ~22 kDa. Sequence comparison with other bacterial SODs showed that the protein contains typical metal-binding motifs and other
Fe-SOD-conserved residues. The sequence has substantial similarity with other bacterial Fe-SOD sequences. The enzymatic activity of the expressed protein was inhibited by hydrogen peroxide but not by sodium azide or potassium cyanide, attributes that indeed are characteristic of typical bacterial Fe-SODs. Western blotting with antiserum against the recombinant Fe-SOD revealed that it is expressed in B. pseudomallei. Transformed E. coli that expressed the Fe-SOD had significantly increased SOD activity and was highly tolerant to paraquat-mediated replication inhibition, compared to transformed cells carrying an empty vector. Our results
provide a basis for further biochemical characterization of the enzyme and elucidation of its role in the pathogenesis of B. pseudomallei.
-
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Junfeng Shi, Jingting Du
European Journal of Horticultural Science.2023; 88(1): 1. CrossRef - Characterization of in vitro phenotypes of Burkholderia pseudomallei and Burkholderia mallei strains potentially associated with persistent infection in mice
R. C. Bernhards, C. K. Cote, K. Amemiya, D. M. Waag, C. P. Klimko, P. L. Worsham, S. L. Welkos
Archives of Microbiology.2017; 199(2): 277. CrossRef - Cloning and characterization of iron‐superoxide dismutase in Antarctic yeast strain Rhodotorula mucilaginosa AN5
Guangfeng Kan, Hua Wen, Xiaofei Wang, Ting Zhou, Cuijuan Shi
Journal of Basic Microbiology.2017; 57(8): 680. CrossRef - Cloning, expression and biochemical characterization of recombinant superoxide dismutase from Antarctic psychrophilic bacterium Pseudoalteromonas sp. ANT506
Quan‐Fu Wang, Yi‐Fan Wang, Yan‐Hua Hou, Yong‐Lei Shi, Han Han, Miao Miao, Ying‐Ying Wu, Yuan‐Ping Liu, Xiao‐Na Yue, Yu‐Jin Li
Journal of Basic Microbiology.2016; 56(7): 753. CrossRef - A predicted cation transporter protein, BPSS1228, is involved in intracellular behaviour ofBurkholderia pseudomalleiin a human lung epithelial cell line (A549)
Teerasit Techawiwattanaboon, Sorujsiri Chareonsudjai, Craig Winstanley
FEMS Microbiology Letters.2016; 363(23): fnw259. CrossRef - Physicochemical Properties Influencing Presence of Burkholderia pseudomallei in Soil from Small Ruminant Farms in Peninsular Malaysia
Hassan Ismail Musa, Latiffah Hassan, Zulkifli Hj. Shamsuddin, Chandrawathani Panchadcharam, Zunita Zakaria, Saleha Abdul Aziz, William C. Nierman
PLOS ONE.2016; 11(9): e0162348. CrossRef
- Identification and Characterization of a Novel β-Galactosidase from Victivallis vadensis ATCC BAA-548, an Anaerobic Fecal Bacterium
-
Uyangaa Temuujin , Won-Jae Chi , Jae-Sun Park , Yong-Keun Chang , Jae Yang Song , Soon-Kwang Hong
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J. Microbiol. 2012;50(6):1034-1040. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2478-6
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Victivallis vadensis ATCC BAA-548 is a Gram-negative, anaerobic bacterium that was isolated from a human fecal sample. From the genomic sequence of V. vadensis, one gene was found to encode agarase; however, its enzymatic properties have never been characterized. The gene encoding the putative agarase (NCBI reference number ZP_01923925) was cloned by PCR and expressed in E. coli Rosetta-gami by using the inducible T7 promoter of pET28a(+). The expressed protein with a 6×His tag at the N-terminus was named His6-VadG925 and purified as a soluble protein by Ni2+-NTA agarose affinity column chromatography. The purification of the enzyme was 26.8-fold, with a yield of 73.2% and a specific activity of 1.02 U/mg of protein. The purified His6-VadG925 produced a single band with an approximate MW of 155 kDa, which is consistent with the calculated value (154,660 Da) including the 6×His tag. Although VadG925 and many of its homologs were annotated as agarases, it did not hydrolyze agarose. Instead, purified His6-VadG925 hydrolyzed an artificial chromogenic substrate, p-nitrophenyl-β-D-galactopyranoside, but not p-nitrophenyl-α-D-galactopyranoside. The optimum pH and temperature for this β-galactosidase activity were pH 7.0 and 40°C, respectively. The Km and Vmax of His6-VadG925 towards p-nitrophenyl-β-D-galactopyranoside were 1.69 mg/ml (0.0056 M) and 30.3 U/mg, respectively. His6-VadG925 efficiently hydrolyzed lactose into glucose and galactose, which was demonstrated by TLC and mass spectroscopy. These results clearly demonstrated that VadG925 is a novel β-galactosidase that can hydrolyze lactose, which is unusual because of its low homology to validated β-galactosidases.
- Detailed Modes of Action and Biochemical Characterization of endo-Arabinanase from Bacillus licheniformis DSM13
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Jung-Mi Park , Myoung-Uoon Jang , Jung-Hyun Kang , Min-Jeong Kim , So-Won Lee , Yeong Bok Song , Chul-Soo Shin , Nam Soo Han , Tae-Jip Kim
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J. Microbiol. 2012;50(6):1041-1046. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2489-3
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221
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An endo-arabinanase (BLABNase) gene from Bacillus licheniformis DSM13 was cloned and expressed in Escherichia coli, and the biochemical properties of its encoded enzyme were characterized. The BLABNase gene consists of a single
open reading frame of 987 nucleotides that encodes 328 amino acids with a predicted molecular mass of about 36 kDa. BLABNase exhibited the highest activity against debranched α-(1,5)-arabinan in 50 mM sodium acetate buffer (pH 6.0) at 55°C. Enzymatic characterization revealed that BLABNase hydrolyzes debranched or linear arabinans with a much higher activity than branched arabinan from sugar
beet. Enzymatic hydrolysis pattern analyses demonstrated BLABNase to be a typical endo-(1,5)-α-L-arabinanase (EC 3.2.1.99) that randomly cleaves the internal α-(1,5)-linked L-arabinofuranosyl residues of a branchless arabinan backbone to release arabinotriose mainly, although a small amount of arabino-oligosaccharide intermediates is also liberated. Our results indicated that BLABNase acts preferentially along with the oligosaccharides longer than arabinopentaose,
thus enabling the enzymatic production of various arabinooligosaccharides.
-
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International Journal of Molecular Sciences.2024; 25(6): 3175. CrossRef - Thermophilic Hemicellulases Secreted by Microbial Consortia Selected from an Anaerobic Digester
Luca Bombardi, Marco Orlando, Martina Aulitto, Salvatore Fusco
International Journal of Molecular Sciences.2024; 25(18): 9887. CrossRef - GH43 endo-arabinanase from Bacillus licheniformis: Structure, activity and unexpected synergistic effect on cellulose enzymatic hydrolysis
Erick Giancarlo S. Farro, Ana Elisa T. Leite, Isabela A. Silva, Jefferson G. Filgueiras, Eduardo R. de Azevedo, Igor Polikarpov, Alessandro S. Nascimento
International Journal of Biological Macromolecules.2018; 117: 7. CrossRef - Novel approaches for biotechnological production and application of L-arabinose
Csaba Fehér
Journal of Carbohydrate Chemistry.2018; 37(5): 251. CrossRef - Exploiting sp2‐Hybridisation in the Development of Potent 1,5‐α‐l‐Arabinanase Inhibitors
Travis Coyle, Aleksandra W. Debowski, Annabelle Varrot, Keith A. Stubbs
ChemBioChem.2017; 18(11): 974. CrossRef - An Acid-Adapted Endo-α-1,5-l-arabinanase for Pectin Releasing
Chong Lang, Rujian Yang, Ying Yang, Bei Gao, Li Zhao, Wei Wei, Hualei Wang, Shingo Matsukawa, Jingli Xie, Dongzhi Wei
Applied Biochemistry and Biotechnology.2016; 180(5): 900. CrossRef - In vitro digestion and fermentation properties of linear sugar-beet arabinan and its oligosaccharides
Jin Seok Moon, So Yeon Shin, Hye Sun Choi, Wooha Joo, Seung Kee Cho, Ling Li, Jung-Hyun Kang, Tae-Jip Kim, Nam Soo Han
Carbohydrate Polymers.2015; 131: 50. CrossRef - Increased biomass saccharification by supplementation of a commercial enzyme cocktail with endo-arabinanase from Bacillus licheniformis
Carla Botelho Machado, Ana Paula Citadini, Rosana Goldbeck, Evandro Antônio de Lima, Fernanda Lopes Figueiredo, Tony Márcio da Silva, Zaira Bruna Hoffmam, Amanda Silva de Sousa, Fábio Márcio Squina, Maria de Lourdes Teixeira de Moraes Poliz, Roberto Rulle
Biotechnology Letters.2015; 37(7): 1455. CrossRef - Biochemical Characterization of a Novel Endo-1,5-α-l-arabinanase fromRhizomucor miehei
Zhou Chen, Yu Liu, Qiaojuan Yan, Shaoqing Yang, Zhengqiang Jiang
Journal of Agricultural and Food Chemistry.2015; 63(4): 1226. CrossRef
- NOTE] Diaminobutyricimonas aerilata gen. nov., sp. nov., a Novel Member of the Family Microbacteriaceae Isolated from an Air Sample in Korea
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Yun-Hee Jang , Soo-Jin Kim , Moriyuki Hamada , Tomohiko Tamura , Jae-Hyung Ahn , Hang-Yeon Weon , Ken-ichiro Suzuki , Soon-Wo Kwon
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J. Microbiol. 2012;50(6):1047-1052. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2118-1
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A novel isolate, designated 6408J-67T, was isolated from an air sample collected from Jeju Island, Republic of Korea. Its phenotypic, genotypic, and chemotaxonomic properties were compared with those of members of the family Microbacteriaceae.
The Gram-positive, aerobic, motile rod formed light yellow, smooth, circular and convex colonies. Optimal growth occurred at 30°C and pH 7.0. 16S rRNA gene sequence data showed that the isolate was a novel member of the family Microbacteriaceae, with the highest sequence similarity (97.4%) to Labedella gwakjiensis KSW2-17T and less (<97%) sequence similarity with other taxa. The major cellular fatty acids (>10% of the total) were anteiso-C15:0, iso-C14:0, and iso-C16:0. The strain also contained MK-13, MK-12, and MK-14 as the major menaquinones, as well as diphosphatidylglycerol, phosphatidylglycerol, and two unknown glycolipids. Its peptidoglycan structure was B1β with 2,4-diaminobutyric acid as a diamino acid. Mycolic acids were absent. The DNA G+C content was 68.3 mol%. Based on these phenotypic and genotypic findings, strain 6408J-67T represents a novel species of a new genus within the family Microbacteriaceae, for which the name Diaminobutyricimonas aerilata gen. nov., sp. nov. is proposed. The type strain is 6408J-67T (=KACC 15518T =NBRC 108726T).
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Antonie van Leeuwenhoek.2020; 113(3): 365. CrossRef -
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Jun Heo, Hayoung Cho, Mi Ae Kim, Moriyuki Hamada, Tomohiko Tamura, Satomi Saitou, Soo-Jin Kim, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2019; 69(7): 2101. CrossRef - Genome-Based Taxonomic Classification of the Phylum Actinobacteria
Imen Nouioui, Lorena Carro, Marina García-López, Jan P. Meier-Kolthoff, Tanja Woyke, Nikos C. Kyrpides, Rüdiger Pukall, Hans-Peter Klenk, Michael Goodfellow, Markus Göker
Frontiers in Microbiology.2018;[Epub] CrossRef - Puzihella rosea gen. nov., sp. nov., a novel member of the family Microbacteriaceae isolated from freshwater
Shih-Yi Sheu, Li-Ping Liu, Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology.2017; 67(7): 2383. CrossRef - Molecular Detection of Diverse Leifsonia Strains Associated With Sugarcane
Anthony J. Young, Catherine J. Nock
Plant Disease.2017; 101(8): 1422. CrossRef - Korean indigenous bacterial species with valid names belonging to the phylum Actinobacteria
Kyung Sook Bae, Mi Sun Kim, Ji Hee Lee, Joo Won Kang, Dae In Kim, Ji Hee Lee, Chi Nam Seong
Journal of Microbiology.2016; 54(12): 789. CrossRef - Huakuichenia soli gen. nov., sp. nov., a new member of the family Microbacteriaceae, isolated from contaminated soil
Long Zhang, Xiao-Long Chen, Qiang Hu, Zhe-Pu Ruan, Kai Chen, Shun-Peng Li, Jian-Dong Jiang
International Journal of Systematic and Evolutionary Microbiology.2016; 66(12): 5399. CrossRef -
Aurantimicrobium minutum gen. nov., sp. nov., a novel ultramicrobacterium of the family Microbacteriaceae, isolated from river water
Ryosuke Nakai, Tomoya Baba, Hironori Niki, Miyuki Nishijima, Takeshi Naganuma
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_11): 4072. CrossRef -
Lysinibacter cavernae gen. nov., sp. nov., a new member of the family Microbacteriaceae isolated from a karst cave
Li Tuo, Lin Guo, Shao-Wei Liu, Jia-Meng Liu, Yu-Qin Zhang, Zhong-Ke Jiang, Xian-Fu Liu, Li Chen, Jian Zu, Cheng-Hang Sun
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_10): 3305. CrossRef -
Conyzicola lurida gen. nov., sp. nov., isolated from the root of Conyza canadensis
Tae-Su Kim, Ji-Hye Han, Yochan Joung, Seung Bum Kim
International Journal of Systematic and Evolutionary Microbiology
.2014; 64(Pt_8): 2753. CrossRef - Description of Galbitalea soli gen. nov., sp. nov., and Frondihabitans sucicola sp. nov.
Soo-Jin Kim, Jun-Muk Lim, Jae-Hyung Ahn, Hang-Yeon Weon, Moriyuki Hamada, Ken-ichiro Suzuki, Tae-Young Ahn, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2014; 64(Pt_2): 572. CrossRef - Diaminobutyricibacter tongyongensis gen. nov., sp. nov. and Homoserinibacter gongjuensis gen. nov., sp. nov. Belong to the Family Microbacteriaceae
Soo-Jin Kim, Jae-Hyung Ahn, Hang-Yeon Weon, Moriyuki Hamada, Ken-ichiro Suzuki, Soon-Wo Kwon
Journal of Microbiology.2014; 52(6): 527. CrossRef - List of new names and new combinations previously effectively, but not validly, published
International Journal of Systematic and Evolutionary Microbiology
.2013; 63(Pt_3): 797. CrossRef
- NOTE] The Microbial Population in the Air of Cultivation Facility of Oyster Mushrooms
-
Se Chul Chun , Yu Na Ahn , Sajid Mohamad Khan , Il Min Chung , Hyang Yoen Won , Chang Sung Jhune , Yool Jin Park
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J. Microbiol. 2012;50(6):1053-1057. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2195-1
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162
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The microbial population in the air of mushroom cultivation facility was studied to understand the population structure and size depending on the cultivation methods and regions. The air contents of ten farmers’ oyster mushroom cultivation facilities in Kyunggi province were sampled. The results indicated that there was no difference in population size depending on the regions of mushroom cultivation. In addition,
the population size of bacteria in the growth room was bigger than that of the cooling room and outside of the mushroom house, but the fungal population was similar in size between cultivation stages. With regard to population structure, Pseudomonas and Penicillium species were most frequently isolated from the air of oyster mushroom cultivation facility.
- NOTE] Chitinibacter suncheonensis sp. nov., a Chitinolytic Bacterium from a Mud Flat in Suncheon Bay
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Sung Kyum Kim , Yong Ho Kim , Yu Seok Jeong , Han Beur Na , Jungho Kim , Keun Sik Baik , Han Dae Yun , Jung-Kul Lee , Hoon Kim
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J. Microbiol. 2012;50(6):1058-1062. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2333-9
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189
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3
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A chitinolytic bacterium, designated strain SK16T, was isolated from a mud flat in Suncheon Bay, Republic of Korea. Strain SK16T is Gram-negative, strictly aerobic, motile by a polar flagellum, and short rod-shaped. Phylogenetic analyses based on 16S rRNA gene sequences showed that the strain belonged to the genus Chitinibacter and was most closely related to Chitinibacter tainanensis S1T (98.2% similarity). DNA-DNA hybridization analyses showed a low association value of 20.45±4.08% between them. The major cellular fatty acids, the G+C content of the genomic DNA, and the predominant quinone of the strain were summed feature 3 (iso-C15:0 2-OH and/or C16:1 ω7c; 50.5%) and C12:0 (12.5%), 52.26 mol%, and Q-8, respectively. Based on the phylogenetic, chemotaxonomic, and phenotypic properties, strain SK16T represents a novel species of the genus Chitinibacter, for which the name Chitinibacter suncheonensis sp. nov. is proposed. The type strain is SK16T (=KCTC 23839T =DSM 25421T).
-
Citations
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- Molecular Characterization of Four Alkaline Chitinases from Three Chitinolytic Bacteria Isolated from a Mudflat
Sung Kyum Kim, Jong Eun Park, Jong Min Oh, Hoon Kim
International Journal of Molecular Sciences.2021; 22(23): 12822. CrossRef - The Draft Genome Sequence and Analysis of an Efficiently Chitinolytic Bacterium Chitinibacter sp. Strain GC72
Alei Zhang, Xiaofang Mo, Guoguang Wei, Ning Zhou, Sai Yang, Jie Chen, Yingying Wang, Kequan Chen, Pingkai Ouyang
Current Microbiology.2020; 77(12): 3903. CrossRef - Characterization of extracellular chitinase from Chitinibacter sp. GC72 and its application in GlcNAc production from crayfish shell enzymatic degradation
Cong Gao, Alei Zhang, Kequan Chen, Zhikui Hao, Junmao Tong, Pingkai Ouyang
Biochemical Engineering Journal.2015; 97: 59. CrossRef
- NOTE] Effects of Nutritional Enrichment on the Production of Acetone-Butanol-Ethanol (ABE) by Clostridium acetobutylicum
-
Sung Jun Choi , Joungmin Lee , Yu-Sin Jang , Jin Hwan Park , Sang Yup Lee , In Ho Kim
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J. Microbiol. 2012;50(6):1063-1066. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2373-1
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203
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20
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Clostridium acetobutylicum is an industrially important organism that produces acetone-butanol-ethanol (ABE). The main objective of this study was to characterize the effects of increased cell density on the production of ABE during the phase transition from acidogenesis to solventogenesis in C. acetobutylicum. The increased ABE productivity of C. acetobutylicum was obtained by increasing the cell density using a newly designed medium (designated C. acetobutylicum medium 1; CAM1). The maximum OD600 value of C. acetobutylicum ATCC 824 strain obtained with CAM1 was 19.7, which is 1.8 times higher than that obtained with clostridial growth medium (CGM). The overall ABE productivity obtained in the CAM1-fermetation of the ATCC 824 strain was 0.83 g/L/h, which is 1.5 times higher than that (0.55 g/L/h) obtained with CGM. However, the increased productivity obtained with CAM1 did not result in an increase in the final ABE titer, because phase transition occurred at a high titer of acids.
-
Citations
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- Characterization of acidogenic phase metabolism in Clostridium acetobutylicum ATCC 824 (pCD07239) under different culture conditions
Haeng Lim Lee, Selim Ashoor, Zhuang Yao, Yu-Sin Jang
Applied Biological Chemistry.2024;[Epub] CrossRef - Enhanced biobutanol production with sustainable Co-substrates synergy from paper waste and garden waste with municipal biowaste
Sara Farmanbordar, Armaghan Javid, Hamid Amiri, Joeri F.M. Denayer, Keikhosro Karimi
Biomass and Bioenergy.2024; 186: 107262. CrossRef - Effect of butyrate supplementation on butanol production and metabolic behavior in Clostridium acetobutylicum ATCC 824 (pCD07239)
Sampathkumar Palaniswamy, Haeng Lim Lee, Selim Ashoor, Yu-Sin Jang
Journal of Applied Biological Chemistry.2024;[Epub] CrossRef - Acetone-butanol-ethanol fermentation products recovery: Challenges and opportunities
Saeed Rafieyan, Mohammad Amin Boojari, Ali Setayeshnia, Mohammad Fakhroleslam, Eduardo Sánchez-Ramírez, Mohammad Saber Bay, Juan Gabriel Segovia-Hernández
Chemical Engineering Research and Design.2024; 205: 640. CrossRef - A comparative phenotypic and genomic analysis of Clostridium beijerinckii mutant with enhanced solvent production
Seung-Oh Seo, Ting Lu, Yong-Su Jin, Hans P. Blaschek
Journal of Biotechnology.2021; 329: 49. CrossRef - Biobutanol production from lignocellulosic biomass using immobilized Clostridium acetobutylicum
Tsung-Yu Tsai, Yung-Chung Lo, Cheng-Di Dong, Dillirani Nagarajan, Jo-Shu Chang, Duu-Jong Lee
Applied Energy.2020; 277: 115531. CrossRef - Pathway dissection, regulation, engineering and application: lessons learned from biobutanol production by solventogenic clostridia
Shubo Li, Li Huang, Chengzhu Ke, Zongwen Pang, Liming Liu
Biotechnology for Biofuels.2020;[Epub] CrossRef - Combining chemical flocculation and bacterial co‐culture of Cupriavidus taiwanensis and Ureibacillus thermosphaericus to detoxify a hardwood hemicelluloses hydrolysate and enable acetone–butanol–ethanol fermentation leading to butanol
Mariem Theiri, Hassan Chadjaa, Mariya Marinova, Mario Jolicoeur
Biotechnology Progress.2019;[Epub] CrossRef - Effects of nutritional enrichment on acid production from degenerated (non-solventogenic) Clostridium acetobutylicum strain M5
Ji Eun Woo, Sang Yup Lee, Yu-Sin Jang
Applied Biological Chemistry.2018; 61(4): 469. CrossRef -
Unique genetic cassettes in a
Thermoanaerobacterium
contribute to simultaneous conversion of cellulose and monosugars into butanol
Tinggang Li, Chen Zhang, Kun-Lin Yang, Jianzhong He
Science Advances.2018;[Epub] CrossRef - Metabolic Engineering Strategies of Clostridia for Butyric Acid Production
Hyeon Ji Noh, Yu-Sin Jang
KSBB Journal.2017; 32(3): 169. CrossRef - A dynamic metabolic flux analysis of ABE (acetone‐butanol‐ethanol) fermentation by Clostridium acetobutylicum ATCC 824, with riboflavin as a by‐product
Xinhe Zhao, Mayssa Kasbi, Jingkui Chen, Sabine Peres, Mario Jolicoeur
Biotechnology and Bioengineering.2017; 114(12): 2907. CrossRef - Co-fermentation of alfalfa juice and hardwood hydrolysate for butanol production in combined biorefinery systems
Fatma Mechmech, Mariya Marinova, Hassan Chadjaa, Mohamed Rahni, Najla Ben Akacha, Mohamed Gargouri
Industrial Crops and Products.2016; 89: 29. CrossRef - Simultaneous saccharification and fermentation of hemicellulose to butanol by a non-sporulating Clostridium species
Tinggang Li, Jianzhong He
Bioresource Technology.2016; 219: 430. CrossRef - A quantitative metabolomics study of high sodium response in Clostridium acetobutylicum ATCC 824 acetone-butanol-ethanol (ABE) fermentation
Xinhe Zhao, Stefan Condruz, Jingkui Chen, Mario Jolicoeur
Scientific Reports.2016;[Epub] CrossRef - Alfalfa juice as a nitrogen source or supplement for acetone–butanol–ethanol production by Clostridium acetobutylicum
Fatma Mechmech, Mariya Marinova, Hassan Chadjaa, Mohamed Rahni, Najla Ben Akacha, Mohamed Gargouri
Industrial Crops and Products.2015; 78: 73. CrossRef - Improvement of butanol production from a hardwood hemicelluloses hydrolysate by combined sugar concentration and phenols removal
Fatma Mechmech, Hassan Chadjaa, Mohamed Rahni, Mariya Marinova, Najla Ben Akacha, Mohamed Gargouri
Bioresource Technology.2015; 192: 287. CrossRef - Metabolic engineering of Clostridium acetobutylicum for butyric acid production with high butyric acid selectivity
Yu-Sin Jang, Jung Ae Im, So Young Choi, Jung Im Lee, Sang Yup Lee
Metabolic Engineering.2014; 23: 165. CrossRef - Proteomic analyses of the phase transition from acidogenesis to solventogenesis using solventogenic and non-solventogenic Clostridium acetobutylicum strains
Yu-Sin Jang, Mee-Jung Han, Joungmin Lee, Jung Ae Im, Yu Hyun Lee, Eleftherios Terry Papoutsakis, George Bennett, Sang Yup Lee
Applied Microbiology and Biotechnology.2014; 98(11): 5105. CrossRef - Molecular interactions of alcohols with zeolite BEA and MOR frameworks
Kai Stückenschneider, Juliane Merz, Gerhard Schembecker
Journal of Molecular Modeling.2013; 19(12): 5611. CrossRef
- NOTE] Susceptibility of Human H3N2 Influenza Virus to Oseltamivir in South Korea, 2009–2011
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Sehee Park , Jin Il Kim , Ilseob Lee , Sangmoo Lee , Min-Woong Hwang , Joon-Yong Bae , Jun Heo , Eun-Joo Lim , Won-Seok Seok , Hee Jin Cheong , Joon Young Song , Woo Joo Kim , Man-Seong Park
-
J. Microbiol. 2012;50(6):1067-1070. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2541-3
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230
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4
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During the 2009–2011 influenza seasons, 10.26% of the specimens isolated from patients in South Korea were subtyped as H3N2 viruses. Some oseltamivir-sensitive H3N2 samples exhibited different plaque morphologies, and were found to have novel mutations in the neuraminidase gene. In a subsequent analysis using NA mutant viruses, viral compensation against oseltamivir treatment was observed only in the N2 mutant virus. All things considered, these novel mutations may account for the exclusive characteristics of selected H3N2 viruses observed in plaque reduction assays.
-
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- Combination Effects of Peramivir and Favipiravir against Oseltamivir-Resistant 2009 Pandemic Influenza A(H1N1) Infection in Mice
Sehee Park, Jin Il Kim, Ilseob Lee, Sangmoo Lee, Min-Woong Hwang, Joon-Yong Bae, Jun Heo, Donghwan Kim, Seok-Il Jang, Hyejin Kim, Hee Jin Cheong, Jin-Won Song, Ki-Joon Song, Luck Ju Baek, Man-Seong Park, Balaji Manicassamy
PLoS ONE.2014; 9(7): e101325. CrossRef - Effects of a hemagglutinin D222G substitution on the pathogenicity of 2009 influenza A (H1N1) virus in mice
Jin Il Kim, Ilseob Lee, Sehee Park, Sangmoo Lee, Min-Woong Hwang, Joon-Yong Bae, Jun Heo, Donghwan Kim, Seok-Il Jang, Jin-Won Song, Man-Seong Park
Archives of Virology.2014; 159(10): 2559. CrossRef - The anti-influenza virus effect of Phellinus igniarius extract
Sangmoo Lee, Jin Il Kim, Jun Heo, Ilseob Lee, Sehee Park, Min-Woong Hwang, Joon-Yong Bae, Mee Sook Park, Hyoung Jin Park, Man-Seong Park
Journal of Microbiology.2013; 51(5): 676. CrossRef - Strategy for Developing Medical Arsenals by Modulation of Membrane Fusion Activity of Influenza Virus Hemagglutinin
Sangmoo Lee, Jin Il Kim, Ilseob Lee, Man-Seong Park
Journal of Bacteriology and Virology.2013; 43(4): 337. CrossRef
- NOTE] Effects of PCR Cycle Number and DNA Polymerase Type on the 16S rRNA Gene Pyrosequencing Analysis of Bacterial Communities
-
Jae-Hyung Ahn , Byung-Yong Kim , Jaekyeong Song , Hang-Yeon Weon
-
J. Microbiol. 2012;50(6):1071-1074. Published online December 30, 2012
-
DOI: https://doi.org/10.1007/s12275-012-2642-z
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154
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67
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The effects of PCR cycle number and DNA polymerase type on 16S rRNA gene pyrosequencing analysis were investigated using an artificially prepared bacterial community (mock community). The bacterial richness was overestimated at increased PCR cycle number mostly due to the occurence of chimeric sequences, and this was more serious with a DNA polymerase having proofreading activity than with Taq DNA polymerase. These results suggest that PCR cycle number must be kept as low as possible for accurate estimation of bacterial richness and that particular care must be taken when a DNA polymerase having proofreading activity is used.
- NOTE] Molecular Phylogenetic Status of Korean Strain of Podosphaera xanthii, a Causal Pathogen of Powdery Mildew on Japanese Thistle (Cirsium japonicum) in Korea
-
Hyang Burm Lee
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J. Microbiol. 2012;50(6):1075-1080. Published online December 30, 2012
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DOI: https://doi.org/10.1007/s12275-012-2618-z
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150
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8
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Powdery mildew diseases are sensitive to climate change and spread can be favored by increased temperature and low moisture. During 2011 to 2012, a powdery mildew disease by a Podosphaera species was observed on the leaves of Japanese thistle (Cirsium japonicum) in Korea. The initial sign of this disease included scattered superficial white mycelia on leaves. As the disease progressed, abundant necrotic black spots exhibiting chasmothecia were formed on the leaves. rDNA ITS and 28S homologies of the fungus (EML-CSPW1) showed 100% identity values with those regions from many strains of P. xanthii (syn. P. fusca) via NCBI BLASTN search.
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- First Records of Rare Ascomycete Fungi,Acrostalagmus luteoalbus,Bartalinia robillardoides, andCollariella carterifrom Freshwater Samples in Korea
Thuong T. T. Nguyen, Seo Hee Lee, Sun Jeong Jeon, Hyang Burm Lee
Mycobiology.2019; 47(1): 1. CrossRef - Mitochondrial genome of thePodosphaera xanthii: a plant pathogen causes powdery mildew in cucurbits
Seunghwan Kim, Myunghee Jung, Eun A. Oh, Tae Ho Kim, Jeong-Gu Kim
Mitochondrial DNA Part B.2019; 4(2): 4172. CrossRef - Pectolinarin inhibits proliferation, induces apoptosis, and suppresses inflammation in rheumatoid arthritis fibroblast‐like synoviocytes by inactivating the phosphatidylinositol 3 kinase/protein kinase B pathway
Laifang Wang, Na Wang, Qing Zhao, Bingyi Zhang, Yanjie Ding
Journal of Cellular Biochemistry.2019; 120(9): 15202. CrossRef - Isolation and Characterization of Two Rare Mucoralean Species with Specific Habitats
Seo Hee Lee, Thuong T. T. Nguyen, Hyang Burm Lee
Mycobiology.2018; 46(3): 205. CrossRef - Isolation and Characterization of Three Zygomycetous Fungi in Korea: Backusella circina, Circinella muscae, and Mucor ramosissimus
Thuong T. T. Nguyen, Hyang Burm Lee
Mycobiology.2018; 46(4): 317. CrossRef - In renal hypertension, Cirsium japonicum strengthens cardiac function via the intermedin/nitric oxide pathway
Xiaoling Yang, Hui Shao, Yong Chen, Ning Ding, Anning Yang, Jue Tian, Yuanxu Jiang, Guizhong Li, Yideng Jiang
Biomedicine & Pharmacotherapy.2018; 101: 787. CrossRef - Isolation and Characterization of Three Unrecorded Zygomycete Fungi in Korea: Cunninghamella bertholletiae, Cunninghamella echinulata, and Cunninghamella elegans
Thuong T. T. Nguyen, Young-Joon Choi, Hyang Burm Lee
Mycobiology.2017; 45(4): 318. CrossRef - Characterization of Powdery Mildew Caused by Podosphaera fusca Infecting Melothria japonica(Thunb.) Maxim
Jin-Hyeuk Kwon, Hyeong-Jin Jee, Jinwoo Kim
Journal of Agriculture & Life Science.2015; 49(5): 47. CrossRef
- NOTE] Bacterial Diversity in Ornithogenic Soils Compared to Mineral Soils on King George Island, Antarctica
-
Ok-Sun Kim , Namyi Chae , Hyun Soo Lim , Ahnna Cho , Jeong Hoon Kim , Soon Gyu Hong , Jeongsu Oh
-
J. Microbiol. 2012;50(6):1081-1085. Published online December 30, 2012
-
DOI: https://doi.org/10.1007/s12275-012-2655-7
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169
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28
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In the Narębski Point area of King George Island of Antarctica, ornithogenic soils form on land under Chinstrap and Gentoo Penguin rookeries. The purpose of this study was to compare the bacterial community compositions in the gradient of contamination by penguin feces; mineral soil with no contamination, and soils with medium or high contamination. The discrimination between mineral soils and ornithogenic soils by characterization of physicochemical properties and bacterial communities was notable. Physicochemical analyses of soil properties showed enrichment of carbon and nitrogen in ornithogenic soils. Firmicutes were present abundantly in active ornithogenic soils, Bacteroidetes and Proteobacteria in a formerly active one, and several diverse phyla such as Proteobacteria, Actinobacteria, and Acidobacteria in mineral soils. Some predominant species belonging to the Firmicutes and Gammaproteobacteria may play an important role for the mineralization of nutrients in ornithogenic soils. Results of this study indicate that dominant species may play an important role in mineralization of nutrients in these ecosystems.
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Shan Zhang, Hui Zhong, Lingling Huang, Zhaoyu Kong, Lan Wu
Ecological Engineering.2024; 199: 107170. CrossRef - Sulfate-reducing bacteria unearthed: ecological functions of the diverse prokaryotic group in terrestrial environments
Konstantin A. Demin, Evgeniya V. Prazdnova, Tatiana M. Minkina, Andrey V. Gorovtsov, Gemma Reguera
Applied and Environmental Microbiology.2024;[Epub] CrossRef - Soil chemical properties associated with penguin carrion in Barton Peninsula, King George Island, Antarctica
Nur Adilla Zaini, Siti Sofo Ismail, Van Lun Low, Mohd Hafizi Mahmud, Jamal Houssaini, Won Young Lee, Chong Chin Heo
Polar Biology.2024; 47(7): 681. CrossRef - Competitive relationships due to similar nutrient preferences reshape soil bacterial metacommunities
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Science of The Total Environment.2024; 933: 172956. CrossRef - Microbial community composition of terrestrial habitats in East Antarctica with a focus on microphototrophs
Ekaterina Pushkareva, Josef Elster, Sakae Kudoh, Satoshi Imura, Burkhard Becker
Frontiers in Microbiology.2024;[Epub] CrossRef - Diversity and functionality of soil prokaryotic communities in antarctic volcanic soils: insights from penguin-influenced environments
Diego Segura, Karen Jordaan, Beatriz Díez, Javier Tamayo-Leiva, Sebastian Doetterl, Daniel Wasner, Jerónimo Cifuentes-Anticevic, Angélica Casanova-Katny
Polar Biology.2024; 47(9): 945. CrossRef - Plant growth-promoting potential of bacterial isolates from the rhizosphere of Deschampsia antarctica
Olga Maslovska, Solomiia Komplikevych, Iryna Danylo, Ivan Parnikoza, Svitlana Hnatush
Ukrainian Antarctic Journal.2024; 22(1(28)): 63. CrossRef - Environmental Adaptation of Psychrophilic Bacteria Subtercola spp. Isolated from Various Cryospheric Habitats
Hanbyul Lee, Yong-Joon Cho, Ahnna Cho, Ok-Sun Kim
Journal of Microbiology.2023; 61(7): 663. CrossRef - Microbial Community Composition of the Antarctic Ecosystems: Review of the Bacteria, Fungi, and Archaea Identified through an NGS-Based Metagenomics Approach
Vesselin V. Doytchinov, Svetoslav G. Dimov
Life.2022; 12(6): 916. CrossRef - Optimization of plant harvest and management patterns to enhance the carbon sink of reclaimed wetland in the Yangtze River estuary
Wenxuan Mei, Qiuxiao Yin, Xiaoping Tian, Xiaohua Fu, Yongjian Guan, Lei Wang
Journal of Environmental Management.2022; 312: 114954. CrossRef - Source and acquisition of rhizosphere microbes in Antarctic vascular plants
Sergio Guajardo-Leiva, Jaime Alarcón, Florence Gutzwiller, Jorge Gallardo-Cerda, Ian S. Acuña-Rodríguez, Marco Molina-Montenegro, Keith A. Crandall, Marcos Pérez-Losada, Eduardo Castro-Nallar
Frontiers in Microbiology.2022;[Epub] CrossRef - Highly specialized bacterial communities within three distinct rhizocompartments of Antarctic hairgrass (Deschampsia antarctica Desv.)
Anna Znój, Jakub Grzesiak, Jan Gawor, Robert Gromadka, Katarzyna J. Chwedorzewska
Polar Biology.2022; 45(5): 833. CrossRef - Correlation between molecular microbial community and nitrogen cycling on ornithogenic soil affected by tsunami in Japan
Akifumi Hosoda, Mao Kurosaki, Kentaro Kazama, Hirotatsu Murano, Chitoshi Mizota, Yasuaki Niizuma
Ecological Genetics and Genomics.2022; 23: 100114. CrossRef - Diversity of microbial communities and genes involved in nitrous oxide emissions in Antarctic soils impacted by marine animals as revealed by metagenomics and 100 metagenome-assembled genomes
Lia Ramírez-Fernández, Luis H. Orellana, Eric R. Johnston, Konstantinos T. Konstantinidis, Julieta Orlando
Science of The Total Environment.2021; 788: 147693. CrossRef - A smelly business: Microbiology of Adélie penguin guano (Point Thomas rookery, Antarctica)
Jakub Grzesiak, Agata Kaczyńska, Jan Gawor, Karolina Żuchniewicz, Tamara Aleksandrzak-Piekarczyk, Robert Gromadka, Marek K. Zdanowski
Science of The Total Environment.2020; 714: 136714. CrossRef - Seabird and pinniped shape soil bacterial communities of their settlements in Cape Shirreff, Antarctica
Lía Ramírez-Fernández, Nicole Trefault, Margarita Carú, Julieta Orlando, Adrian Zwolicki
PLOS ONE.2019; 14(1): e0209887. CrossRef - Local-scale variation of soil bacterial communities in ice-free regions of maritime Antarctica
Mincheol Kim, Hyun-Soo Lim, Chang-Uk Hyun, Ahnna Cho, Hyun-Ju Noh, Soon Gyu Hong, Ok-Sun Kim
Soil Biology and Biochemistry.2019; 133: 165. CrossRef - Links between bacteria derived from penguin guts and deposited guano and the surrounding soil microbiota
Wen Chyin Yew, David Anthony Pearce, Michael James Dunn, Stacey Adlard, Siti Aisyah Alias, Azizan Abu Samah, Peter Convey
Polar Biology.2018; 41(2): 269. CrossRef - Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia
purinilytica comb.
Anja Poehlein, Natalya Yutin, Rolf Daniel, Michael Y. Galperin
International Journal of Systematic and Evolutionary Microbiology
.2017; 67(8): 2711. CrossRef - Transfer of ornithogenic influence through different trophic levels of the Arctic terrestrial ecosystem of Bjørnøya (Bear Island), Svalbard
Katarzyna Zmudczyńska-Skarbek, Mateusz Barcikowski, Szymon M. Drobniak, Dariusz J. Gwiazdowicz, Pierre Richard, Piotr Skubała, Lech Stempniewicz
Soil Biology and Biochemistry.2017; 115: 475. CrossRef - Microbial diversity at Mitchell Peninsula, Eastern Antarctica: a potential biodiversity “hotspot”
Mukan Ji, Josie van Dorst, Andrew Bissett, Mark V. Brown, Anne S. Palmer, Ian Snape, Steven D. Siciliano, Belinda C. Ferrari
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- ERRATUM] Homoserinimonas aerilata gen. nov., sp. nov., a Novel Member of the Family Microbacteriaceae Isolated from an Air Sample in Korea
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Soo-Jin Kim , Yun-Hee Jang , Moriyuki Hamada , Tomohiko Tamura , Jae-Hyung Ahn , Hang-Yeon Weon , Ken-ichiro Suzuki , Soon-Wo Kwon
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J. Microbiol. 2012;50(6):1086-1086.
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Abstract
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In the article by Soon-Jin Kim et al. that appears in the Journal of Microbiology 2012; 50, 673-679, the menaquinone composition
of strain 5317J-19T was presented as MK-12 (50%) and MK-11 (31%) as major ones, and MK-13 (11%), MK-10 (7%), and
MK-9 (1%). The correct composition of menaquinones are MK-13 (50%) and MK-12 (31%) as major ones, and MK-14 (11%),
MK-11 (7%), and MK-10 (1%).