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- Volume 50(5); October 2012
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Review
- REVIEW] The Role of Type III Secretion System 2 in Vibrio parahaemolyticus Pathogenicity
- Hyeilin Ham , Kim Orth
- J. Microbiol. 2012;50(5):719-725. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2550-2
- 224 View
- 0 Download
- 48 Crossref
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Abstract
- Vibrio parahaemolyticus, a Gram-negative marine bacterial pathogen, is emerging as a major cause of food-borne illnesses worldwide due to the consumption of raw seafood leading to diseases including gastroenteritis, wound infection, and septicemia. The bacteria utilize toxins and type III secretion system (T3SS) to trigger virulence. T3SS is a multi-subunit needle-like apparatus used to deliver bacterial proteins, termed effectors, into the host cytoplasm which then target various eukaryotic signaling pathways. V. parahaemolyticus carries two T3SSs in each of its two chromosomes, named T3SS1 and T3SS2, both of which play crucial yet distinct roles during infection: T3SS1 causes cytotoxicity whereas T3SS2 is mainly associated with enterotoxicity. Each T3SS secretes a unique set of effectors that contribute to virulence by acting on different host targets and serving different functions. Emerging studies on T3SS2 of V. parahaemolyticus, reveal its regulation, translocation, discovery, characterization of its effectors, and development of animal models to understand the enterotoxicity. This review on recent findings for T3SS2 of V. parahaemolyticus highlights a novel mechanism of invasion that appears to be conserved by other marine bacteria.
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Citations
Citations to this article as recorded by
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Frontiers in Microbiology.2021;[Epub] CrossRef - T3SEpp: an Integrated Prediction Pipeline for Bacterial Type III Secreted Effectors
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-
Apparent expansion of virulent
Vibrio parahaemolyticus
in humans and sea otters
Research Support, Non-U.S. Gov'ts
- Reliability of Non-Culturable Virus Monitoring by PCR-Based Detection Methods in Environmental Waters Containing Various Concentrations of Target RNA
- Eung Seo Koo , Chang-Hoon Yoo , Youjin Na , Soo Young Park , Hey Rhyoung Lyoo , Yong Seok Jeong
- J. Microbiol. 2012;50(5):726-734. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2279-y
- 208 View
- 0 Download
- 9 Scopus
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Abstract
- Owing to the lack of practical cell culture system for human noroviruses (HuNoV), various detection methods based on conventional reverse transcription-PCR (RT-PCR) and the quantitative real-time PCR have been major tools for monitoring environmental water safety. In this study, we showed that the proportion of water sample concentrates used for one-step RT-PCR significantly influences false-negative findings of the non-culturable viruses. In total, 59 archived samples of previously analyzed water concentrates were reexamined for HuNoV RNA by the one-step RT-PCR and semi-nested PCR. Using new aliquots for RNA extraction for every trial, up to 20 PCR trials were performed for each archive to determine whether the crosscheck results supported the previous determinations. We reconfirmed that 27.6% (8/29) of the samples were HuNoV-positive samples: 6.7% (1/15) from groundwater, 33.3% (3/9) from river water, and 80% (4/5) from treated sewage effluent (TSE). These results corresponded to the ratio of previously negative HuNoV samples now identified as positive (8/30): 6.7% (1/15) from groundwater, 20% (1/5) from river water, and 60% (6/10) from TSE. To elucidate the cause of these results, 16 different concentrations of murine norovirus (MNV) RNA (from 2×102 to 8×103 copies, divided into 10 tubes for each concentration) were subjected to one-step RT-PCR. The detection frequency and reproducibility decreased sharply when the number of MNV RNA copies fell below threshold levels. These observations suggest that the proportion of water concentrate used for PCR-based detection should be considered carefully when deciding viral presence in certain types of environmental water, particularly in regard with legal controls.
- Pyrosequencing Analysis of the Bacterial Communities in the Guts of Honey Bees Apis cerana and Apis mellifera in Korea
- Jae-Hyung Ahn , In-Pyo Hong , Jeung-Im Bok , Byung-Yong Kim , Jaekyeong Song , Hang-Yeon Weon
- J. Microbiol. 2012;50(5):735-745. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2188-0
- 243 View
- 0 Download
- 84 Crossref
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Abstract
- The bacterial communities in the guts of the adults and larvae of the Asian honey bee Apis cerana and the European honey bee Apis mellifera were surveyed by pyrosequencing the 16S rRNA genes. Most of the gut bacterial 16S rRNA gene sequences were highly similar to the known honey bee-specific ones and affiliated with Pasteurellaceae or lactic acid bacteria (LAB). The numbers of operational taxonomic units (OTUs, defined at 97% similarity) were lower in the larval guts (6 or 9) than in the adult guts (18 or 20), and the frequencies of Pasteurellaceae-related OTUs were higher in the larval guts while those of LAB-related OTUs in the adult guts. The frequencies of Lactococcus, Bartonella, Spiroplasma, Enterobacteriaceae, and Flavobacteriaceae-related OTUs were much higher in A. cerana guts while Bifidobacterium and Lachnospiraceae-related OTUs were more abundant in A. mellfera guts. The bacterial community structures in the midguts and hindguts of the adult honey bees were not different for A. cerana, but significantly different for A. mellifera. The above results substantiated the previous observation that honey bee guts are dominated by several specific bacterial groups, and also showed that the relative abundances of OTUs could be markedly changed depending on the developmental stage, the location within the gut, and the honey bee species. The possibility of using the gut bacterial community as an indicator of honey bee health was discussed.
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- DOI: https://doi.org/10.1007/s12275-012-2079-4
- 294 View
- 0 Download
- 6 Crossref
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Abstract
- The efficiency of the two white-rot fungi Pycnoporus coccineus and Coriolopsis polyzona in the Olive Oil Mill Wastewater (OOMW) treatment was investigated. Both fungi were active in the decolourisation and COD removal of OOMW at 50 g/L COD, but only the first fungus remains effective on the crude effluent (COD=100 g/L). Moreover P. coccineus was less affected by oxygen supplementation and exhibited a high tolerance to agitation in comparison to C. polyzona. However, it required a nitrogen supplementation to obtain faster and higher COD removal. To overcome the negative effect of agitation on fungi growth and efficiency, immobilisation of C. polyzona and P. coccineus in polyurethane foam was applied. The immobilized system showed better COD decreases during three consecutive batches without remarkable loss of performances. The results obtained in this study suggested that immobilized C. polyzona and especially immobilized P. coccineus might be applicable to a large scale for the removal colour and COD of OOMW.
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Research Support, Non-U.S. Gov'ts
- Characterization of the Bacterial and Archaeal Communities in Rice Field Soils Subjected to Long-Term Fertilization Practices
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Abstract
- The bacterial and archaeal communities in rice field soils subjected to different fertilization regimes for 57 years were investigated in two different seasons, a non-planted, drained season (April) and a rice-growing, flooded season (August), by performing soil dehydrogenase assay, real-time PCR assay and pyrosequencing analysis. All fertilization regimes increased the soil dehydrogenase activity while the abundances of bacteria and archaea increased in the plots receiving inorganic fertilizers plus compost and not in those receiving inorganic fertilizers only. Rice-growing and flooding decreased the soil dehydrogenase activity while they increased the bacterial diversity in rice field soils. The bacterial communities were dominated by Chloroflexi, Proteobacteria, and Actinobacteria and the archaeal communities by Crenarchaeota at the phylum level. In principal coordinates analysis based on the weighted Fast UniFrac metric, the bacterial and archaeal communities were separated primarily by season, and generally distributed along with soil pH, the variation of which had been caused by long-term fertilization. Variations in the relative abundance according to the season or soil pH were observed for many bacterial and archaeal groups. In conclusion, the microbial activity, prokaryotic abundance and diversity, and prokaryotic community structure in the rice field soils were changed by season and long-term fertilization.
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- Fertilization enhances microbial-driven N2O emissions while film mulching mitigates fertilization-driven emissions
- PyroTrimmer: a Software with GUI for Pre-Processing 454 Amplicon Sequences
- Jeongsu Oh , Byung Kwon Kim , Wan-Sup Cho , Soon Gyu Hong , Kyung Mo Kim
- J. Microbiol. 2012;50(5):766-769. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2494-6
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Abstract
- The ultimate goal of metagenome research projects is to understand the ecological roles and physiological functions of the microbial communities in a given natural environment. The 454 pyrosequencing platform produces the longest reads among the most widely used next generation sequencing platforms. Since the relatively longer reads of the 454 platform provide more information for identification of microbial sequences, this platform is dedicated to microbial community and population studies. In order to accurately perform the downstream analysis of the 454 multiplex datasets, it is necessary to remove artificially designed sequences located at either ends of individual reads and to correct lowquality sequences. We have developed a program called Pyro-Trimmer that removes the barcodes, linkers, and primers, trims sequence regions with low quality scores, and filters out low-quality sequence reads. Although these functions have previously been implemented in other programs as well, PyroTrimmer has novelty in terms of the following features: i) more sensitive primer detection using Levenstein distance and global pairwise alignment, ii) the first stand-alone software with a graphic user interface, and iii) various options for trimming and filtering out the low-quality sequence reads. PyroTrimmer, written in JAVA, is compatible with multiple operating systems and can be downloaded free at http://pyrotrimmer.kobic.re.kr.
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- Functional Characterization of the Genes tauO, tauK, and tauI in the Biosynthesis of Tautomycetin
- Fen Wang , Rixiang Kong , Bo Liu , Jing Zhao , Rongguo Qiu , Li Tang
- J. Microbiol. 2012;50(5):770-776. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2154-x
- 327 View
- 0 Download
- 4 Crossref
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Abstract
- Tautomycetin is a specific protein phosphatase I inhibitor. In an effort to elucidate the biosynthetic mechanism of tautomycetin, we inactivated genes of the tautomycetin biosynthetic gene cluster, tauI, tauO, and tauK, which encode for putative P450 oxidase, citryl-CoA lyase, and esterase enzymes, respectively. The mutant STQ0606 (ΔtauO) did not produce any detectable amount of tautomycetin intermediates but could convert dialkylmaleic anhydride to tautomycetin, strongly indicating that TauO was involved in dialkylmaleic anhydride biosynthesis. STQ1211 (ΔtauK) accumulated dialkylmaleic anhydride, whereas the cofermentation of STQ1211 (ΔtauK) and STQ0606 (ΔtauO) restored the production of tautomycetin. Together, these results suggest that TauK was responsible for the conjugation of dialkylmaleic anhydride and the polyketide moiety in tautomycetin biosynthesis. The disruption of tauI resulted in the accumulation of 5-des-ketotautomycetin, revealing that TauI was responsible for the oxidation at C5 as the last step. Although the shunt pathways were involved in the biosynthesis of tautomycetin, the main post-polyketide synthase tailoring steps were dehydration, decarboxylation and oxidation, taking place consecutively. This study allowed us to predict the biosynthesis of tautomycetin more accurately and provided novel insights into the mechanism of the biosynthesis of tautomycetin.
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Citations
Citations to this article as recorded by- Biocatalytic role of cytochrome P450s to produce antibiotics: A review
Anup Adhikari, Sajan Shakya, Shreesti Shrestha, Dipa Aryal, Kavi Prasad Timalsina, Dipesh Dhakal, Yogan Khatri, Niranjan Parajuli
Biotechnology and Bioengineering.2023; 120(12): 3465. CrossRef - Biosynthesis, regulation, and engineering of a linear polyketide tautomycetin: a novel immunosuppressant in Streptomyces sp. CK4412
Si-Sun Choi, Hee-Ju Nah, Hye-rim Pyeon, Eung-Soo Kim
Journal of Industrial Microbiology and Biotechnology.2017; 44(4-5): 555. CrossRef - Optimized transformation of Streptomyces sp. ATCC 39366 producing leptomycin by electroporation
Yong-Qiang Fan, Hong-Jian Liu, Li Yan, Yu-Shi Luan, Hai-Meng Zhou, Jun-Mo Yang, Shang-Jun Yin, Yu-Long Wang
Journal of Microbiology.2013; 51(3): 318. CrossRef - A Novel Alkaloid from Marine-Derived Actinomycete Streptomyces xinghaiensis with Broad-Spectrum Antibacterial and Cytotoxic Activities
Wence Jiao, Fenghua Zhang, Xinqing Zhao, Jiehan Hu, Joo-Won Suh, Marie-Joelle Virolle
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- Identification and Characterization of an Autolysin Gene, atlA, from Streptococcus criceti
- Haruki Tamura , Arisa Yamada , Hirohisa Kato
- J. Microbiol. 2012;50(5):777-784. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2187-1
- 224 View
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- 1 Scopus
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Abstract
- AtlA of Streptococcus mutans is a major autolysin and belongs to glycoside hydrolase family 25 with cellosyl of Streptomyces coelicolor. The autolysin gene (atlA) encoding AtlA was identified from S. criceti. AtlA of S. criceti comprises the signal sequence in the N-terminus, the putative cell-wallbinding domain in the middle, and the catalytic domain in the C-terminus. Homology modeling analysis of the catalytic domain of AtlA showed the resemblance of the spatial arrangement of five amino acids around the predicted catalytic cavity to that of cellosyl. Recombinant AtlA and its four point mutants, D655A, D747A, W831A, and D849A, were evaluated on zymogram of S. criceti cells. Lytic activity was destroyed in the mutants D655A and D747A and diminished in the mutants W831A and D849A. These results suggest that Asp655 and Asp747 residues are critical for lytic activity and Trp831 and Asp849 residues are also associated with enzymatic activity.
- Genome-Wide Enrichment Screening Reveals Multiple Targets and Resistance Genes for Triclosan in Escherichia coli
- Byung Jo Yu , Jung Ae Kim , Hyun Mok Ju , Soo-Kyung Choi , Seung Jin Hwang , Sungyoo Park , EuiJoong Kim , Jae-Gu Pan
- J. Microbiol. 2012;50(5):785-791. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2439-0
- 222 View
- 0 Download
- 17 Crossref
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Abstract
- Triclosan is a widely used biocide effective against different microorganisms. At bactericidal concentrations, triclosan appears to affect multiple targets, while at bacteriostatic concentrations, triclosan targets FabI. The site-specific antibioticlike mode-of-action and a widespread use of triclosan in household products claimed to possibly induce cross-resistance to other antibiotics. Thus, we set out to define more systematically the genes conferring resistance to triclosan; A genomic library of Escherichia coli strain W3110 was constructed and enriched in a selective medium containing a lethal concentration of triclosan. The genes enabling growth in the presence of triclosan were identified by using a DNA microarray and confirmed consequently by ASKA clones overexpressing the selected 62 candidate genes. Among these, forty-seven genes were further confirmed to enhance the resistance to triclosan; these genes, including the FabI target, were involved in inner or outer membrane synthesis, cellsurface material synthesis, transcriptional activation, sugar phosphotransferase (PTS) systems, various transporter systems, cell division, and ATPase and reductase/dehydrogenase reactions. In particular, overexpression of pgsA, rcsA, or gapC conferred to E. coli cells a similar level of triclosan resistance induced by fabI overexpression. These results indicate that triclosan may have multiple targets other than well-known FabI and that there are several undefined novel mechanisms for the resistance development to triclosan, thus probably inducing cross antibiotic resistance.
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Citations
Citations to this article as recorded by- Environmental endocrine disruptors and pregnane X receptor action: A review
Yuan Liang, Yiyao Gong, Qiuyan Jiang, Yifan Yu, Jie Zhang
Food and Chemical Toxicology.2023; 179: 113976. CrossRef - Family Sphingomonadaceae as the key executor of triclosan degradation in both nitrification and denitrification systems
Huihui Dai, Jingfeng Gao, Dingchang Li, Zhiqi Wang, Yingchao Cui, Yifan Zhao
Chemical Engineering Journal.2022; 442: 136202. CrossRef - Metagenomics combined with DNA-based stable isotope probing provide comprehensive insights of active triclosan-degrading bacteria in wastewater treatment
Huihui Dai, Jingfeng Gao, Dingchang Li, Zhiqi Wang, Wanjun Duan
Journal of Hazardous Materials.2021; 404: 124192. CrossRef - The food-grade antimicrobial xanthorrhizol targets the enoyl-ACP reductase (FabI) in Escherichia coli
Yogiara, Elena A. Mordukhova, Dooil Kim, Won-Gon Kim, Jae-Kwan Hwang, Jae-Gu Pan
Bioorganic & Medicinal Chemistry Letters.2020; 30(24): 127651. CrossRef - The key active degrader, metabolic pathway and microbial ecology of triclosan biodegradation in an anoxic/oxic system
Huihui Dai, Jingfeng Gao, Shijie Wang, Dingchang Li, Zhiqi Wang
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Biocide Exposure Induces Changes in Susceptibility, Pathogenicity, and Biofilm Formation in Uropathogenic
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Carl J. Balibar, Terry Roemer
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BMC Microbiology.2016;[Epub] CrossRef - Escherichia coli ASKA Clone Library Harboring tRNA-Specific Adenosine Deaminase (tadA) Reveals Resistance towards Xanthorrhizol
Yogiara, Dooil Kim, Jae-Kwan Hwang, Jae-Gu Pan
Molecules.2015; 20(9): 16290. CrossRef - Development of a Protocol for Predicting Bacterial Resistance to Microbicides
Laura Knapp, Alejandro Amézquita, Peter McClure, Sara Stewart, Jean-Yves Maillard, G. T. Macfarlane
Applied and Environmental Microbiology.2015; 81(8): 2652. CrossRef - Mutations upstream of fabI in triclosan resistant Staphylococcus aureus strains are associated with elevated fabI gene expression
Denis Grandgirard, Leonardo Furi, Maria Laura Ciusa, Lucilla Baldassarri, Daniel R Knight, Ian Morrissey, Carlo R Largiadèr, Stephen L Leib, Marco R Oggioni
BMC Genomics.2015;[Epub] CrossRef - Polymorphic Variation in Susceptibility and Metabolism of Triclosan-Resistant Mutants of Escherichia coli and Klebsiella pneumoniae Clinical Strains Obtained after Exposure to Biocides and Antibiotics
Tânia Curiao, Emmanuela Marchi, Carlo Viti, Marco R. Oggioni, Fernando Baquero, José Luis Martinez, Teresa M. Coque
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Daniel E. Carey, Patrick J. McNamara
Frontiers in Microbiology.2015;[Epub] CrossRef - Triclosan-Induced Aminoglycoside-Tolerant Listeria monocytogenes Isolates Can Appear as Small-Colony Variants
Vicky G. Kastbjerg, Line Hein-Kristensen, Lone Gram
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- Characterization of Thermostable Deblocking Aminopeptidases of Archaeon Thermococcus onnurineus NA1 by Proteomic and Biochemical Approaches
- Yeol Gyun Lee , Sun-Hee Leem , Young-Ho Chung , Seung Il Kim
- J. Microbiol. 2012;50(5):792-797. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2461-2
- 320 View
- 0 Download
- 2 Crossref
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Abstract
- Thermococcus onnurineus NA1 is a hyperthermophilic archaeon that grows optimally at >80°C. The deblocking aminopeptidase (DAP) (TNA1-DAP1) encoded in Ton_1032 of T. onnurineus NA1 is considered a major DAP. However, four genes encoding putative DAP have been identified from a genomic analysis of T. onnurineus NA1. A proteomic analysis revealed that all four DAPs were differentially induced in YPS culture medium and, particularly, two DAPs (TNA1-DAP1 and TNA1-DAP2) were dominantly expressed in T. onnurineus NA1. The biochemical properties and enzyme activity of DAPs induced in an E. coli expression system suggested that the two major DAPs play complementary roles in T. onnurineus NA1.
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Citations
Citations to this article as recorded by- Proteomic Insights into Sulfur Metabolism in the Hydrogen-Producing Hyperthermophilic Archaeon Thermococcus onnurineus NA1
Yoon-Jung Moon, Joseph Kwon, Sung-Ho Yun, Hye Lim, Jonghyun Kim, Soo Kim, Sung Kang, Jung-Hyun Lee, Seung Kim, Young-Ho Chung
International Journal of Molecular Sciences.2015; 16(5): 9167. CrossRef - Characterization of Streptococcus pneumoniae N-acetylglucosamine-6-phosphate deacetylase as a novel diagnostic marker
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- Selection of a Streptomyces Strain Able to Produce Cell Wall Degrading Enzymes and Active against Sclerotinia sclerotiorum
- Adriana Fróes , Andrew Macrae , Juliana Rosa , Marcella Franco , Rodrigo Souza , Rosângela Soares , Rosalie Coelho
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- DOI: https://doi.org/10.1007/s12275-012-2060-2
- 273 View
- 0 Download
- 18 Crossref
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Abstract
- Control of plant pathogen Sclerotinia sclerotiorum is an ongoing challenge because of its wide host range and the persistence of its sclerotia in soil. Fungicides are the most commonly used method to control this fungus but these can have ecotoxicity impacts. Chitinolytic Streptomyces strains isolated from Brazilian tropical soils were capable of inhibiting S. sclerotiorum growth in vitro, offering new possibilities for integrated pest management and biocontrol, with a new approach to dealing with an old problem. Strain Streptomyces sp. 80 was capable of irreversibly inhibiting fungal growth. Compared to other strains, its crude enzymes had the highest chitinolytic levels when measured at 25°C and strongly inhibited sclerotia from S. sclerotiorum. It produced four hydrolytic enzymes involved in fungal cell wall degradation when cultured in presence of the fungal mycelium. The best production, obtained after three days, was 0.75 U/ml for exochitinase, 0.9 U/ml for endochitinase, 0.16 U/ml for glucanase, and 1.78 U/ml for peptidase. Zymogram analysis confirmed two hydrolytic bands of chitinolytic activity with apparent molecular masses of 45.8 and 206.8 kDa. One glucanase activity with an apparent molecular mass of 55 kDa was also recorded, as well as seven bands of peptidase activity with apparent molecular masses ranging from 15.5 to 108.4 kDa. Differential interference contrast microscopy also showed alterations of hyphal morphology after co-culture. Streptomyces sp. 80 seems to be promising as a biocontrol agent against S. sclerotiorum, contributing to the development of new methods for controlling plant diseases and reducing the negative impact of using fungicides.
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Citations
Citations to this article as recorded by- Isolation, identification, and whole-genome sequencing of Streptomyces rochei FE-3-1 against Pyricularia oryzae
Dongxia Du, Zhuo Yi, Shiping Shan, Shuaishuai Gao, Mengyuan Yu, Bin Wang, Chetan Keswani,
PLOS One.2025; 20(10): e0331386. CrossRef - Antifungal Action by Streptomyces globisporus Strain WB03 Against Fusarium cugenangense Causing Gastrodia elata Tuber Rot Disease
Jianxin Chen, Fengjinglin Wu, Youjiao Zhu, Nan Yang, Yuqian Wei, Huancheng Ma, Ziqiang Wu, Jianrong Wu
Plant Disease.2025; 109(11): 2340. CrossRef - Biocontrol Potential of Streptomyces Strain FY4 Against Heterobasidion Root Rot Pathogen In Vitro
Yilin Li, Xuehai Li, Li Geng, Shijie Li, Ziwen Gao, Lin Huang, Lu-Min Vaario, Hui Sun
Forests.2024; 15(12): 2124. CrossRef - Streptomyces spp. as Biocontrol Agents of Fusarium Basal Rot on Shallots
Eka Wijayanti, Abdjad Asih Nawangsih, Efi Toding Tondok
Jurnal Fitopatologi Indonesia.2024; 20(2): 57. CrossRef - Effects of sulfamethoxazole and copper on the natural microbial community from a fertilized soil
Alessandra Narciso, Paola Grenni, Francesca Spataro, Chiara De Carolis, Jasmin Rauseo, Luisa Patrolecco, Gian Luigi Garbini, Ludovica Rolando, Maria Adelaide Iannelli, Maria Angeles Bustamante, Cristina Alvarez-Alonso, Anna Barra Caracciolo
Applied Microbiology and Biotechnology.2024;[Epub] CrossRef - A comprehensive review on soft rot disease management in ginger (Zingiber officinale) for enhancing its pharmaceutical and industrial values
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Talwinder Kaur, Kanika Khanna, Sonika Sharma, Rajesh K. Manhas
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Rajamuthu Renuka, Kupusamy Prabakar, Rangasamy Anandham, Lakshmanan Pugalendhi, Lingam Rajendran, Thiruvengadam Raguchander, Gandhi Karthikeyan
Life.2023; 13(2): 426. CrossRef - Plant Growth Promoting Actinobacteria, the Most Promising Candidates as Bioinoculants?
Zineb Faiza Boukhatem, Chahinez Merabet, Hassini Tsaki
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Masafumi Shimizu, Hushna Ara Naznin, Ayaka Hieno
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Jingjing Yao, Xinxin Xu, Haiying Liu, Liguang Xu, Liqiang Liu, Hua Kuang, Chuanlai Xu
New Journal of Chemistry.2022; 46(18): 8592. CrossRef - A Rhizobacterium, Streptomyces albulus Z1-04-02, Displays Antifungal Activity against Sclerotium Rot in Mungbean
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Juliana Pacheco da Rosa, Elisa Korenblum, Marcella Novaes Franco-Cirigliano, Fernanda Abreu, Ulysses Lins, Rosângela M. A. Soares, Andrew Macrae, Lucy Seldin, Rosalie R. R. Coelho
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- In Vitro Development and Transfer of Resistance to Chlortetracycline in Bacillus subtilis
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- DOI: https://doi.org/10.1007/s12275-012-1454-5
- 246 View
- 0 Download
- 12 Crossref
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Abstract
- The present criteria and rules controlling the approval of the use of probiotics are limited to antibiotic resistance patterns and the presence of antibiotic resistance genes in bacteria. There is little information available in the literature regarding the risk of the usage of probiotics in the presence of antibiotic pressure. In this study we investigated the development and transfer of antibiotic resistance in Bacillus subtilis selected in vitro by chlortetracycline in a stepwise manner. Bacillus subtilis was exposed to increasing concentrations of chlortetracyclineto induce in vitro resistance to chlortetracycline, and the minimal inhibitory concentrations were determinedfor the mutants. Resistant B. subtilis were conjugated with Escherichia coli NK5449 and Enterococcus faecalis JH2-2 using the filter mating. Three B. subtilis tetracycline resistant mutants (namely, BS-1, BS-2, and BS-3) were derived in vitro. A tetracycline resistant gene, tet (K), was found in the plasmids of BS-1 and BS-2. Three conjugates (BS-1N, BS-2N, and BS-3N) were obtained when the resistant B. subtilis was conjugated with E. coli NK5449. The conjugation frequencies for the BS-1N, BS-2N, and BS-3N conjugates were 4.57×10-7, 1.4×10-7, and 1.3×10-8, respectively. The tet(K) gene was found only in the plasmids of BS-1N. These results indicate that long-term use of probiotics under antibiotic selection pressure could cause antibiotic resistance, and the resistance gene could be transferred to other bacteria. The risk arising from the use of probiotics under antibiotic pressure should be considered in the criteria and rules for the safety assessment of probiotics.
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Citations
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Klaudia Zawadzka, Karolina Oszust, Michał Pylak, Agata Gryta, Jacek Panek, Tomasz Lipa, Magdalena Frąc
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Yvan Vandenplas, Geert Huys, Georges Daube
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Y. Vandenplas, E. De Greef, T. Devreker, G. Veereman-Wauters, B. Hauser
Current Infectious Disease Reports.2013; 15(3): 251. CrossRef
- Searching, identifying and characterizing antagonistic isolates to control Neofabraea representatives causing bull’s-eye rot in apples
- The Production and Immunogenicity of Human Papillomavirus Type 58 Virus-like Particles Produced in Saccharomyces cerevisiae
- Hye-Lim Kwag , Hyoung Jin Kim , Don Yong Chang , Hong-Jin Kim
- J. Microbiol. 2012;50(5):813-820. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2292-1
- 317 View
- 0 Download
- 14 Crossref
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Abstract
- Human papillomavirus (HPV) is the cause of most cases of cervical cancer. HPV type 58 (HPV58) is the second most frequent cause of cervical cancer and high-grade squamous intraepithelial lesions (HSIL) in Asia and South / Central America, respectively. However, there is no vaccine against HPV58, although there are commercially available vaccines against HPV16 and 18. In this study, we produced HPV58 L1 protein from Saccharomyces cerevisiae, and investigated its immunogenicity. We first determined the optimum period of culture for obtaining HPV58 L1. We found that a considerable portion of the HPV58 L1 resulting from 48 h culture cannot be recovered by purification, while the HPV58 L1 resulting from 144 h culture is recovered efficiently: the yield of HPV58 L1 finally recovered from 144 h culture was 2.3 times higher than that from 48 h culture, although the production level of L1 protein from 144 h culture was lower than that from 48 h culture. These results indicate that the proportion of functional L1 protein from 144 h-cultured cells is significantly higher than that of 48 h-cultured cells. The HPV58 L1 purified from the 144 h culture was correctly assembled into structures similar to naturally occurring HPV virions. Immunization with the HPV58 L1 efficiently elicited anti-HPV58 neutralizing antibodies and antigen-specific CD4+ and CD8+ T cell proliferations, without the need for adjuvant. Our findings provide a convenient method for obtaining substantial amounts of highly immunogenic HPV58 L1 from S. cerevisiae.
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Citations
Citations to this article as recorded by- Expression, purification, and immunogenicity study of human papillomavirus type 52 virus-like particles produced in Hansenula polymorpha
Sheila Chairunnisa, Apon Zaenal Mustopa, Budiman Bela, Rosyida Khusniatul Arifah, Rifqiyah Nur Umami, Moh Egy Rahman Firdaus, Nurlaili Ekawati, Herman Irawan, Shasmita Irawan, Maritsa Nurfatwa, Ai Hertati, Sri Swasthikawati, Ela Novianti, Arizah Kusumawat
Biologicals.2025; 90: 101831. CrossRef - Yeast and Virus-like Particles: A Perfect or Imperfect Couple?
Sara Brachelente, Alvaro Galli, Tiziana Cervelli
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Vartika Srivastava, Kripa N. Nand, Aijaz Ahmad, Ravinder Kumar
Vaccines.2023; 11(2): 479. CrossRef - How far have we explored fungi to fight cancer?
Chee Wun How, Yong Sze Ong, Sze Shin Low, Ashok Pandey, Pau Loke Show, Jhi Biau Foo
Seminars in Cancer Biology.2022; 86: 976. CrossRef - Yeast-based vaccines: New perspective in vaccine development and application
Ravinder Kumar, Piyush Kumar
FEMS Yeast Research.2019;[Epub] CrossRef - Advances in Designing and Developing Vaccines, Drugs and Therapeutic Approaches to Counter Human Papilloma Virus
Maryam Dadar, Sandip Chakraborty, Kuldeep Dhama, Minakshi Prasad, Rekha Khandia, Sameer Hassan, Ashok Munjal, Ruchi Tiwari, Kumaragurubaran Karthik, Deepak Kumar, Hafiz M. N. Iqbal, Wanpen Chaicumpa
Frontiers in Immunology.2018;[Epub] CrossRef - The codon-optimized capsid gene of duck circovirus can be highly expressed in yeast and self-assemble into virus-like particles
Cui YANG, Yu XU, Ren-yong JIA, Si-yang LIU, Ming-shu WANG, De-kang ZHU, Shun CHEN, Ma-feng LIU, Xin-xin ZHAO, Kun-feng SUN, Bo JING, Zhong-qiong YIN, An-chun CHENG
Journal of Integrative Agriculture.2017; 16(7): 1601. CrossRef - A novel trivalent HPV 16/18/58 vaccine with anti-HPV 16 and 18 neutralizing antibody responses comparable to those induced by the Gardasil quadrivalent vaccine in rhesus macaque model
Fei Yin, Yajun Wang, Na Chen, Dunquan Jiang, Yefeng Qiu, Yan Wang, Mei Yan, Jianping Chen, Haijiang Zhang, Yongjiang Liu
Papillomavirus Research.2017; 3: 85. CrossRef - EV71 virus-like particles produced by co-expression of capsid proteins in yeast cells elicit humoral protective response against EV71 lethal challenge
Xiaowen Wang, Xiangqian Xiao, Miao Zhao, Wei Liu, Lin Pang, Xin Sun, Shan Cen, Burton B. Yang, Yuming Huang, Wang Sheng, Yi Zeng
BMC Research Notes.2016;[Epub] CrossRef - Therapeutic potential of an AcHERV-HPV L1 DNA vaccine
Hee-Jung Lee, Jong Kwang Yoon, Yoonki Heo, Hansam Cho, Yeondong Cho, Yongdae Gwon, Kang Chang Kim, Jiwon Choi, Jae Sung Lee, Yu-Kyoung Oh, Young Bong Kim
Journal of Microbiology.2015; 53(6): 415. CrossRef - Immunogenicity of a Trivalent Human Papillomavirus L1 DNA-Encapsidated, Non-Replicable Baculovirus Nanovaccine
Hansam Cho, Hee-Jung Lee, Yoon-Ki Heo, Yeondong Cho, Yong-Dae Gwon, Mi-Gyeong Kim, Ki Hoon Park, Yu-Kyoung Oh, Young Bong Kim, Shibo Jiang
PLoS ONE.2014; 9(4): e95961. CrossRef - The Concentration of Carbon Source in the Medium Affects the Quality of Virus-Like Particles of Human Papillomavirus Type 16 Produced in Saccharomyces cerevisiae
Hyoung Jin Kim, Yingji Jin, Hong-Jin Kim, Paulo Lee Ho
PLoS ONE.2014; 9(4): e94467. CrossRef - Panorámica de los receptores celulares del virus del papiloma humano y su repercusión en la purificación de partículas semejantes a virus
J.F. Beltrán-Lissabet
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Hao-Yang Li, Jian-Feng Han, Cheng-Feng Qin, Rong Chen
Vaccine.2013; 31(32): 3281. CrossRef
- Expression, purification, and immunogenicity study of human papillomavirus type 52 virus-like particles produced in Hansenula polymorpha
- Establishment and Characterization of the Epithelioma Papulosum Cyprini (EPC) Cell Line Persistently Infected with Infectious Pancreatic Necrosis Virus (IPNV), an Aquabirnavirus
- Hyoung Jun Kim , Jae-Kwon Cho , Hyung-Kyu Hwang , Myung-Joo Oh , Toyohiko Nishizawa
- J. Microbiol. 2012;50(5):821-826. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2364-2
- 338 View
- 0 Download
- 9 Crossref
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Abstract
- Infectious pancreatic necrosis virus (IPNV), a type species of aquabirnaviruses in the family Birnaviridae, is an etiological agent of infectious pancreatic necrosis and has been isolated from epizootics of cultured salmonids. In the present study, an epithelioma papulosum cyprini (EPC) cell line persistently infected with IPNV (PI-EPC) was experimentally established by subculturing EPC cells surviving IPNV infection, and was characterized. PI-EPC cells were morphologically indistinguishable from EPC, but continued to grow and yield IPNV. PI-EPC cells showed no cytopathic effect due to IPNV inoculation, and susceptibility of PI-EPC cells against heterologous viruses was not different from that of EPC cells. Only one cell of 103.5 PI-EPC cells produced IPNV at approximately 100.5 50% tissue culture infectious dose (TCID50)/cell/day, which was approximately 1,000 times lower than that of normal EPC cells. PI-EPC cells that did not yield IPNV (N-PI-EPC) were screened. The IPNV genome was detected from both PI-EPC and N-PI-EPC cells, and the IPNV VP2 structural protein was detected from both cell lines, but no other IPNV proteins were observed by Western blot analysis with anti-IPNV serum. Thus, multiplication of IPNV in PI-EPC cells was regulated by some host cell factors, except interferon.
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Citations
Citations to this article as recorded by- Kinetic control of nervous necrosis virus by cell-derived antiviral substance and metabolic state in fish cell lines
Han Sol Lee, Toyohiko Nishizawa
Virology.2026; 615: 110767. CrossRef - Fish cells persistently infected with nervous necrosis virus produce a small-molecule substance for reducing cellular metabolism and suppressing viral multiplication
Han Sol Lee, Toyohiko Nishizawa
Scientific Reports.2025;[Epub] CrossRef - RNA-seq analysis of a zebrafish caudal fin cell line in response to infection with spring viraemia of carp virus
Wenji Huang, Ning Ji, Xin Zhao, Jiahong Guo, Jianhua Feng, Kangyong Chen, Yaxin Wu, Junya Wang, Jun Zou
Aquaculture and Fisheries.2024; 9(2): 181. CrossRef - Development and characterization of megalocytivirus persistently-infected cell cultures for high yield of virus
Woo Ju Kwon, Min Ji Yoon, Ji Woong Jin, Kwang Il Kim, Young Chul Kim, Suhee Hong, Joon Bum Jeong, Hyun Do Jeong
Tissue and Cell.2020; 66: 101387. CrossRef - Characterization of Persistent Infection of Megalocytivirus in PMF Cell Line Derived from the Fin of Red Sea Bream Pagrus major
Min-Gyeong JEONG, Woo-Ju KWON, Joon-Gyu MIN, Hyun-Do JEONG
JOURNAL OF FISHRIES AND MARINE SCIENCES EDUCATION.2019; 31(6): 1639. CrossRef - INFECTIOUS PANCREATIC NECROSIS OF SALMONID FISH - DISTRIBUTION AND LABORATORY METHODS FOR DIAGNOSIS
E. Mileva
Trakia Journal of Sciences.2019; 17(4): 401. CrossRef - Infectious Hematopoietic Necrosis
Toyohiko Nishizawa, Mamoru Yoshimizu
Fish Pathology.2016; 52(1): 1. CrossRef - Multiple Passages of Grunt Fin Cells Persistently Infected with Red Seabream Iridovirus (RSIV) at 15ºC or 30ºC to Yield Uninfected Cells
So-Young Oh, Toyohiko Nishizawa
Journal of Aquatic Animal Health.2016; 28(4): 214. CrossRef - A Novel Disorder of Cultured Juvenile Greater Amberjack Seriola dumerili Characterized by Renomegaly and Splenomegaly
Shinpei Wada, Osamu Kurata, Hitoshi Hatakeyama, Azumi Yamashita, Shusaku Takagi, Toyohiko Nishizawa, Hiroshi Yokoyama
Fish Pathology.2014; 49(1): 7. CrossRef
- Kinetic control of nervous necrosis virus by cell-derived antiviral substance and metabolic state in fish cell lines
Journal Article
- Possible Translocation of Periodontal Pathogens into the Lymph Nodes Draining the Oral Cavity
- G. Amodini Rajakaruna , Makoto Umeda , Keisuke Uchida , Asuka Furukawa , Bae Yuan , Yoshimi Suzuki , Ebe Noriko , Yuichi Izumi , Yoshinobu Eishi
- J. Microbiol. 2012;50(5):827-836. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2030-8
- 271 View
- 0 Download
- 21 Crossref
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Abstract
- Numerous publications have reported the presence of periodontopathogenic bacteria in peripheral and central vascular lesions. However, it is unclear how this bacterial translocation occurs. The objective of this study was to investigate whether periodontopathic bacteria are translocated to lymph nodes proximal to the oral cavity. Obtaining lymph node samples is not ethically feasible unless they are excised as part of the surgical management of patients with cancer. This study analyzed formalin-fixed and paraffin-embedded lymph nodes, histologically negative for cancer cell invasion, that were excised from 66 patients with histories of head and neck cancer. Real-time PCR was performed to amplify the 16S ribosomal DNA fragments from Porphyromonas gingivalis, Treponema denticola, Aggregatibacter actinomycetemcomitans, Tannerella forsythia, and Prevotella intermedia. The relationship between bacterial detection and cancer severity, gender, and the use of anti-cancer therapy was examined by Fisher’s exact test. P. gingivalis, T. forsythia, and P. intermedia were present in 17%, 8%, and 8% of the samples of submandibular and submental lymph nodes, respectively. There were no significant relationships between bacterial detection and the cancer disease status, patient gender or use of anticancer therapy. According to these data, it appears that the translocation of periodontopathic bacteria may occur via lymphatic drainage, irrespective of the cancer disease status, gender or anticancer therapy.
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Citations
Citations to this article as recorded by- The potential role of genus Treponema in carcinogenesis with a focus on oral squamous cell carcinoma: a scoping review of the evidence
Pratibha Gopalkrishna, Krishnananda Prabhu, Lakshmi Puzhankara, Madhurya Kedlaya, Somasish Ghosh Dastidar, Monica Charlotte Solomon, Thokur Sreepathy Murali
BMC Oral Health.2025;[Epub] CrossRef - Upper gastrointestinal tract microbiota with oral origin in relation to oesophageal squamous cell carcinoma
Shegan Gao, Zichao Zhang, Kui Sun, Meng-Xiang Li, Yi-Jun Qi
Annals of Medicine.2023;[Epub] CrossRef - Porphyromonas gingivalis regulates atherosclerosis through an immune pathway
Qijun Ruan, Peng Guan, Weijuan Qi, Jiatong Li, Mengying Xi, Limin Xiao, Sulan Zhong, Dandan Ma, Jia Ni
Frontiers in Immunology.2023;[Epub] CrossRef - The preventive effects of perioperative oral care on surgical site infections after pancreatic cancer surgery: a retrospective study
Hiroshi Nobuhara, Yasuhiro Matsugu, Junko Tanaka, Tomoyuki Akita, Keiko Ito
Supportive Care in Cancer.2022; 30(4): 3337. CrossRef - 術前口腔環境の適正化
浩 延原, 康弘 眞次, 圭子 伊藤
The Japanese Journal of SURGICAL METABOLISM and NUTRITION.2021; 55(5): 166. CrossRef - Periodontal disease and cancer: Epidemiologic studies and possible mechanisms
Ngozi Nwizu, Jean Wactawski‐Wende, Robert J. Genco
Periodontology 2000.2020; 83(1): 213. CrossRef - Unculturable and culturable periodontal-related bacteria are associated with periodontal inflammation during pregnancy and with preterm low birth weight delivery
Changchang Ye, Zhongyi Xia, Jing Tang, Thatawee Khemwong, Yvonne Kapila, Ryutaro Kuraji, Ping Huang, Yafei Wu, Hiroaki Kobayashi
Scientific Reports.2020;[Epub] CrossRef - How the evolving epidemics of opioid misuse and HIV infection may be changing the risk of oral sexually transmitted infection risk through microbiome modulation
Wiley D. Jenkins, Lauren B. Beach, Christofer Rodriguez, Lesli Choat
Critical Reviews in Microbiology.2020; 46(1): 49. CrossRef - The periodontopathic bacteria in placenta, saliva and subgingival plaque of threatened preterm labor and preterm low birth weight cases: a longitudinal study in Japanese pregnant women
Changchang Ye, Sayaka Katagiri, Naoyuki Miyasaka, Hiroaki Kobayashi, Thatawee Khemwong, Toshiyuki Nagasawa, Yuichi Izumi
Clinical Oral Investigations.2020; 24(12): 4261. CrossRef - Fretibacterium sp. human oral taxon 360 is a novel biomarker for periodontitis screening in the Japanese population
Thatawee Khemwong, Hiroaki Kobayashi, Yuichi Ikeda, Takanori Matsuura, Takeaki Sudo, Chihiro Kano, Ryo Mikami, Yuichi Izumi, David M. Ojcius
PLOS ONE.2019; 14(6): e0218266. CrossRef - Eubacterium saphenum as a Novel Bacterial Biomarker for Periodontitis Screening
Thatawee KHEMWONG, Hiroaki KOBAYASHI, Yuichi IKEDA, Takeaki SUDO, Chihiro KANO, Takanori MATSUURA, Yuichi IZUMI
THE JOURNAL OF THE STOMATOLOGICAL SOCIETY,JAPAN.2018; 85(2): 62. CrossRef - Oral hygiene might prevent cancer
Oscar J. Cordero, Rubén Varela-Calviño
Heliyon.2018; 4(10): e00879. CrossRef - Localization and density of Porphyromonas gingivalis and Tannerella forsythia in gingival and subgingival granulation tissues affected by chronic or aggressive periodontitis
G. Amodini Rajakaruna, Mariko Negi, Keisuke Uchida, Masaki Sekine, Asuka Furukawa, Takashi Ito, Daisuke Kobayashi, Yoshimi Suzuki, Takumi Akashi, Makoto Umeda, Walter Meinzer, Yuichi Izumi, Yoshinobu Eishi
Scientific Reports.2018;[Epub] CrossRef - Periodontal Disease and Incident Cancer Risk among Postmenopausal Women: Results from the Women's Health Initiative Observational Cohort
Ngozi N. Nwizu, James R. Marshall, Kirsten Moysich, Robert J. Genco, Kathleen M. Hovey, Xiaodan Mai, Michael J. LaMonte, Jo L. Freudenheim, Jean Wactawski-Wende
Cancer Epidemiology, Biomarkers & Prevention.2017; 26(8): 1255. CrossRef - 周術期口腔ケアによる消化器外科術後の感染性合併症に対する予防効果
The Japanese Journal of SURGICAL METABOLISM and NUTRITION.2017; 51(4): 165. CrossRef - The oral cavity microbiota: between health, oral disease, and cancers of the aerodigestive tract
Pierre Le Bars, Sébastien Matamoros, Emmanuel Montassier, Françoise Le Vacon, Gilles Potel, Assem Soueidan, Fabienne Jordana, Marie-France de La Cochetière
Canadian Journal of Microbiology.2017; 63(6): 475. CrossRef - Gingipain‐dependent augmentation by Porphyromonas gingivalis of phagocytosis of Tannerella forsythia
Y.‐J. Jung, H.‐K. Jun, B.‐K. Choi
Molecular Oral Microbiology.2016; 31(6): 457. CrossRef - Inverse Association of Plasma IgG Antibody to Aggregatibacter actinomycetemcomitans and High C-Reactive Protein Levels in Patients with Metabolic Syndrome and Periodontitis
Supanee Thanakun, Suchaya Pornprasertsuk-Damrongsri, Misa Gokyu, Hiroaki Kobayashi, Yuichi Izumi, Özlem Yilmaz
PLOS ONE.2016; 11(2): e0148638. CrossRef - The inflammasome and danger molecule signaling: at the crossroads of inflammation and pathogen persistence in the oral cavity
Özlem Yilmaz, Kyu Lim Lee
Periodontology 2000.2015; 69(1): 83. CrossRef - Neck Masses in Children
Amy Eapen, Deepak Kamat
Clinical Pediatrics.2014; 53(11): 1027. CrossRef - Looking in the Porphyromonas gingivalis cabinet of curiosities: the microbium, the host and cancer association
K.R. Atanasova, Ö. Yilmaz
Molecular Oral Microbiology.2014; 29(2): 55. CrossRef
- The potential role of genus Treponema in carcinogenesis with a focus on oral squamous cell carcinoma: a scoping review of the evidence
Research Support, Non-U.S. Gov'ts
- Intestinal Intraepithelial TCRγδ+ T Cells are Activated by Normal Commensal Bacteria
- Sang Phil Jeong , Jung-Ah Kang , Sung-Gyoo Park
- J. Microbiol. 2012;50(5):837-841. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2468-8
- 280 View
- 0 Download
- 9 Crossref
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Abstract
- TCRγδ+ T cells play a critical role in protecting the intestinal mucosa against pathogenic infection. In the absence of infection, TCRγδ+ T cell activation must be continuously regulated by T regulatory cells (Treg) to prevent the development of colitis. However, the activation of intestinal TCRγδ+ T cells under normal conditions has not been clearly resolved. In order to determine TCRγδ+ T cell activation in vivo, we designed an NF-κB based reporter system. Using the recombinant lentiviral method, we delivered the NF-κB reporter to isolated TCRγδ+ T cells, which were then adoptively transferred into normal mice. Our data indicate that the NF-κB activation level in TCRγδ+ T cells is higher in the intestinal intraepithelial layer than in the lamina propria region. In addition, the surface expression level of lymphocyte activation marker CD69 in TCRγδ+ T cells is also higher in the intestinal intraepithelial layer and this activation was reduced by Sulfatrim treatment which removes of commensal bacteria. Collectively, our data indicate that the TCRγδ+ T cell population attached to the intestinal lumen is constitutively activated even by normal commensal bacteria.
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Citations
Citations to this article as recorded by- Gamma-delta T cells suppress microbial metabolites that activate striatal neurons and induce repetitive/compulsive behavior in mice
Laura M. Cox, Bruna K. Tatematsu, Lydia Guo, Danielle S. LeServe, Julia Mayrink, Marilia G. Oliveira, Dustin Donnelly, Roberta C. Fonseca, Luisa Lemos, Toby B. Lanser, Ana C. Rosa, Juliana R. Lopes, Luke A. Schwerdtfeger, Gabriela F.C. Ribeiro, Eduardo L.
Brain, Behavior, and Immunity.2024; 117: 242. CrossRef - Gamma-delta T cells modulate the microbiota and fecal micro-RNAs to maintain mucosal tolerance
Rafael M. Rezende, Laura M. Cox, Thais G. Moreira, Shirong Liu, Selma Boulenouar, Fyonn Dhang, Danielle S. LeServe, Brenda N. Nakagaki, Juliana R. Lopes, Bruna K. Tatematsu, Luisa Lemos, Julia Mayrink, Eduardo L. C. Lobo, Lydia Guo, Marilia G. Oliveira, C
Microbiome.2023;[Epub] CrossRef - Oral tolerance: an updated review
Rafael M. Rezende, Howard L. Weiner
Immunology Letters.2022; 245: 29. CrossRef - Role of orally induced regulatory T cells in immunotherapy and tolerance
Thais B. Bertolini, Moanaro Biswas, Cox Terhorst, Henry Daniell, Roland W. Herzog, Annie R. Piñeros
Cellular Immunology.2021; 359: 104251. CrossRef - Mechanisms of Maintenance of Foot-and-Mouth Disease Virus Persistence Inferred From Genes Differentially Expressed in Nasopharyngeal Epithelia of Virus Carriers and Non-carriers
James J. Zhu, Carolina Stenfeldt, Elizabeth A. Bishop, Jessica A. Canter, Michael Eschbaumer, Luis L. Rodriguez, Jonathan Arzt
Frontiers in Veterinary Science.2020;[Epub] CrossRef - History and mechanisms of oral tolerance
Rafael M. Rezende, Howard L. Weiner
Seminars in Immunology.2017; 30: 3. CrossRef - γδ T Cells Coexpressing Gut Homing α4β7 and αE Integrins Define a Novel Subset Promoting Intestinal Inflammation
Jeong-su Do, Sohee Kim, Karen Keslar, Eunjung Jang, Emina Huang, Robert L Fairchild, Theresa T Pizarro, Booki Min
The Journal of Immunology.2017; 198(2): 908. CrossRef - CD69 Is the Crucial Regulator of Intestinal Inflammation: A New Target Molecule for IBD Treatment?
Katarina Radulovic, Jan Hendrik Niess
Journal of Immunology Research.2015; 2015: 1. CrossRef - Peroxisome-localized hepatitis Bx protein increases the invasion property of hepatocellular carcinoma cells
Jae-Min Han, Jung-Ah Kang, Min-Hee Han, Kyung-Hun Chung, Cho-Rong Lee, Woo-Keun Song, Youngsoo Jun, Sung-Gyoo Park
Archives of Virology.2014; 159(10): 2549. CrossRef
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- Antifungal Activity of Leuconostoc citreum and Weissella confusa in Rice Cakes
- Eunjong Baek , Hyojin Kim , Hyejung Choi , Sun Yoon , Jeongho Kim
- J. Microbiol. 2012;50(5):842-848. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2153-y
- 306 View
- 0 Download
- 39 Crossref
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Abstract
- The antifungal activity of organic acids greatly improves the shelf life of bread and bakery products. However, little is known about the effect of lactic acid fermentation on fungal contamination in rice cakes. Here, we show that lactic acid fermentation in rice dough can greatly retard the growth of three fungal species when present in rice cakes, namely Cladosporium sp. YS1, Neurospora sp. YS3, and Penicillium crustosum YS2. The antifungal activity of the lactic acid bacteria against these fungi was much better than that of 0.3% calcium propionate. We found that organic acids including lactic and acetic acid, which are byproducts of lactic fermentation or can be artificially added, were the main antifungal substances. We also found that some Leuconostoc citreum and Weissella confusa strains could be good starter species for rice dough fermentation. These results imply that these lactic acid bacteria can be applicable to improve the preservation of rice cakes.
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Citations
Citations to this article as recorded by- Antifungal potential of Lactobacillus bioactive metabolites: synergistic interactions with food preservatives and molecular docking insights
Ahmed M. Emara, Diaa A. Marrez, Asmaa S. Ramadan, Ahmed A. El-Rashedy, Ahmed Noah Badr, Karolina Hoppe, Hongjun Li, Zhifei He
European Food Research and Technology.2025; 251(9): 2761. CrossRef - Lactic Acid Bacteria–Derived Secondary Metabolites: Emerging Natural Alternatives for Food Preservation
Riza Jane S. Banicod, Nazia Tabassum, Aqib Javaid, Young-Mog Kim, Fazlurrahman Khan
Probiotics and Antimicrobial Proteins.2025;[Epub] CrossRef - Antimicrobial Properties of Thermally Processed Oyster Shell Powder for Use as Calcium Supplement
Sungmo Ahn, Soohwan Lee, Seokwon Lim
Foods.2025; 14(15): 2579. CrossRef - Purification and structural characterization of APTs, a novel antifungal peptide produced by Lactobacillus paracasei ALAC-4, and its inhibitory effect on Candida albicans
Jing Dong, Lin Zhu, Ziyu Sun, Mandlaa, Zhongjun Chen
LWT.2024; 199: 116077. CrossRef - Optimization of pile-fermentation process, quality and microbial diversity analysis of dark hawk tea (Machilus rehderi)
Yongyi Yang, Juan Peng, Qingqing Li, Qinfei Song, Quentin Cronk, Biao Xiong
LWT.2024; 192: 115707. CrossRef - Potential of Lactic Acid Bacteria and Bacillus spp. in a Bio-Detoxification Strategy for Mycotoxin Contaminated Wheat Grains
Sandra Mischler, Amandine André, Susette Freimüller Leischtfeld, Nadina Müller, Irene Chetschik, Susanne Miescher Schwenninger
Applied Microbiology.2024; 4(1): 96. CrossRef - Changes in microbial community during the factory production of sweet dumplings from glutinous rice determined by high-throughput sequencing analysis
Biao Suo, Zijie Dong, Yangyang Huang, Peng Guan, Xiaojie Wang, Huiping Fan, Zhongmin Huang, Zhilu Ai
LWT.2023; 180: 114689. CrossRef - Evaluation of Antifungal Metabolites Produced by Lactic Acid Bacteria
Joanna Ivy Irorita Fugaban, Eun Sung Jung, Svetoslav Dimitrov Todorov, Wilhelm Heinrich Holzapfel
Probiotics and Antimicrobial Proteins.2023; 15(5): 1447. CrossRef - Evaluation of antifungal activity of lactic acid bacteria against fungi in simulated cheese matrix
Luana Virgínia Souza, Raiane Rodrigues da Silva, Andressa Falqueto, Andressa Fusieger, Evandro Martins, Cinzia Caggia, Cinzia Lucia Randazzo, Antonio Fernandes de Carvalho
LWT.2023; 182: 114773. CrossRef - Biocontrol of Rhizoctonia solani in basmati rice by the application of Lactobacillus and Weissella spp.
Maira Akhtar, Asia Nosheen, Rumana Keyani, Humaira Yasmin, Rabia Naz, Saqib Mumtaz, Muhammad Nadeem Hassan
Scientific Reports.2023;[Epub] CrossRef - Recent developments in antifungal lactic acid bacteria: Application, screening methods, separation, purification of antifungal compounds and antifungal mechanisms
Hong Chen, Xiaohai Yan, Gengan Du, Qi Guo, Yiheng Shi, Jiale Chang, Xiaoyu Wang, Yahong Yuan, Tianli Yue
Critical Reviews in Food Science and Nutrition.2023; 63(15): 2544. CrossRef - Removal of aflatoxin M1 from milk and aqueous medium by indigenously isolated strains of W. confusa H1 and L. plantarum S2
Himani J. Chaudhary, Ami R. Patel
Food Bioscience.2022; 45: 101468. CrossRef - Antifungal Preservation of Food by Lactic Acid Bacteria
Ahmad Nasrollahzadeh, Samira Mokhtari, Morteza Khomeiri, Per E. J. Saris
Foods.2022; 11(3): 395. CrossRef - Biological control for basal rot in yellow pitahaya fruits (Selenicereus megalanthus): Ex vivo trials
Luisa F. Lozada, Cristobal N. Aguilar, Claudia L. Vargas, Carolina M. Bedoya, Liliana Serna-Cock
Journal of King Saud University - Science.2022; 34(5): 102042. CrossRef - Microbial enrichment evaluation during the fermentation of ensiling pruned branches from tea plants
Shiqi Lin, Huihui Huang, Jinglei Zheng, Haiyu Lin, Yuefei Wang, Ping Xu
International Journal of Food Microbiology.2022; 374: 109742. CrossRef - Effects of hexanoic acid on microbial communities, fermentation, and hygienic quality of corn silages infested with toxigenic fungi
Wenbo Wang, Xin Yang, Junfeng Li, Zhihao Dong, Jie Zhao, Tao Shao, Xianjun Yuan
Journal of the Science of Food and Agriculture.2022; 102(9): 3522. CrossRef - Antipathogenic Action and Antibiotic Sensitivity Pattern of the Borhani-Associated Lactic Acid Bacterium Weissella confusa LAB-11
Tanim Jabid Hossain, Iqbal Hossain Nafiz, Halima Akter Mozumder, Ferdausi Ali, Nabila Rahman, Md. Sajib Khan
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- NOTE] Antifungal Activity of Extracellular Hydrolases Produced by Autolysing Aspergillus nidulans Cultures
- Melinda Szilágyi , Fruzsina Anton , Katalin Forgács , Jae-Hyuk Yu , István Pócsi , Tamás Emri
- J. Microbiol. 2012;50(5):849-854. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2001-0
- 298 View
- 0 Download
- 8 Crossref
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Abstract
- Carbon-starving Aspergillus nidulans cultures produce high activities of versatile hydrolytic enzymes and, among these, ChiB endochitinase and EngA β-1,3-endoglucanase showed significant antifungal activity against various fungal species. Double deletion of engA and chiB diminished the antifungal activity of the fermentation broths and increased conidiogenesis and long-term viability of A. nidulans, but decreased the growth rate on culture media containing weak carbon sources. Production of ChiB and EngA can influence fungal communities either directly due to their antifungal properties or indirectly through their effects on vegetative growth. Our data suggest saprophytic fungi as promising future candidates to develop novel biocontrol technologies.
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Application and antagonistic mechanisms of atoxigenic
Aspergillus
strains for the management of fungal plant diseases
- NOTE] Burkholderia denitrificans sp. nov., Isolated from the Soil of Dokdo Island, Korea
- Chang-Muk Lee Lee , Hang-Yeon Weon , Sang-Hong Yoon , Soo-Jin Kim , Bon-Sung Koo , Soon-Wo Kwon
- J. Microbiol. 2012;50(5):855-859. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-1554-2
- 244 View
- 0 Download
- 9 Crossref
-
Abstract
- A novel, Gram-negative, bacterial strain KIS30-44T was identified from wet forest soil collected on the Korean island of Dokdo. Growth of the strain was observed at 15–30°C, pH 5−9, 0–3% NaCl, and 950 mM KNO3. KIS30-44T reduced nitrate to nitrogen gas. Analysis of the 16S rRNA gene sequence showed that KIS30-44T was phylogenetically related to Burkholderia sacchari, Burkholderia mimosarum, and Burkholderia oxyphila (98.1%, 98.0%, and 98.0% sequence similarity, respectively). The genomic G+C content was 63.5 mol%. KIS30-44T exhibited less than 52% DNA-DNA relatedness with the type strains of 9 closely related Burkholderia species. The major isoprenoid quinone was Q-8. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and two unknown aminolipids. The major fatty acids in KIS30-44T were C16:0, C18:1 ω7c and summed feature 3 (iso-C15:0 2-OH and C16:1 ω7c), and the strain contained half the amount of C17:0 cyclo found in the 9 closely related Burkholderia species. The results of these phenotypic, 16S rRNA gene sequence, DNA-DNA hybridization, and chemotaxonomic data indicate that KIS30-44T represents a novel species within the genus Burkholderia, for which the name Burkholderia denitrificans (Type strain KIS30-44T =KACC 12733T =DSM 24336T) is proposed.
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Chrizelle W. Beukes, Stephanus N. Venter, Emma T. Steenkamp
Grass and Forage Science.2021; 76(1): 10. CrossRef -
Paraburkholderia madseniana sp. nov., a phenolic acid-degrading bacterium isolated from acidic forest soil
Roland C. Wilhelm, Sean J. L. Murphy, Nicole M. Feriancek, David C. Karasz, Christopher M. DeRito, Jeffrey D. Newman, Daniel H. Buckley
International Journal of Systematic and Evolutionary Microbiology .2020; 70(3): 2137. CrossRef - Paraburkholderia lycopersici sp. nov., a nitrogen-fixing species isolated from rhizoplane of Lycopersicon esculentum Mill. var. Saladette in Mexico
Erika Yanet Tapia-García, Ivan Arroyo-Herrera, Fernando Uriel Rojas-Rojas, J. Antonio Ibarra, María Soledad Vásquez-Murrieta, Lourdes Martínez-Aguilar, Isabel M. López-Lara, William B. Whitman, Paulina Estrada de los Santos
Systematic and Applied Microbiology.2020; 43(6): 126133. CrossRef - Insights into the methanogenic degradation of N, N-dimethylformamide: The functional microorganisms and their ecological relationships
Zhe Kong, Lu Li, Jiang Wu, Tao Zhang, Yu-You Li
Bioresource Technology.2019; 271: 37. CrossRef - Paraburkholderia dokdonella sp. nov., isolated from a plant from the genus Campanula
Man-Young Jung, Myung-Suk Kang, Ki-Eun Lee, Eun-Young Lee, Soo-Je Park
Journal of Microbiology.2019; 57(2): 107. CrossRef - Burkholderia jirisanensis sp. nov., isolated from forest soil
Seil Kim, Gyeongtaek Gong, Han Min Woo, Yunje Kim, Youngsoon Um
International Journal of Systematic and Evolutionary Microbiology.2016; 66(3): 1260. CrossRef -
Burkholderia humisilvae sp. nov., Burkholderia solisilvae sp. nov. and Burkholderia rhizosphaerae sp. nov., isolated from forest soil and rhizosphere soil
Jae-Chan Lee, Kyung-Sook Whang
International Journal of Systematic and Evolutionary Microbiology .2015; 65(Pt_9): 2986. CrossRef - Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species
Amandeep Sawana, Mobolaji Adeolu, Radhey S. Gupta
Frontiers in Genetics.2014;[Epub] CrossRef - List of new names and new combinations previously effectively, but not validly, published
International Journal of Systematic and Evolutionary Microbiology .2013; 63(Pt_1): 1. CrossRef
- The history and distribution of nodulating Paraburkholderia, a potential inoculum for Fynbos forage species
- NOTE] Next-Generation Sequencing-Based Genome-Wide Mutation Analysis of L-Lysine-Producing Corynebacterium glutamicum ATCC 21300 Strain
- Chang-Soo Lee , Jae-Young Nam , Eun-Suk Son , O-chul Kwon , Woorijarang Han , Jae-Yong Cho , Young-Jin Park
- J. Microbiol. 2012;50(5):860-863. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2109-2
- 282 View
- 0 Download
- 9 Crossref
-
Abstract
- In order to identify single nucleotide polymorphism and insertion/deletion mutations, we performed whole-genome re-sequencing of the enhanced L-lysine-producing Corynebacterium glutamicum ATCC 21300 strain. In total, 142 single nucleotide polymorphisms and 477 insertion/deletion mutations were identified in the ATCC 21300 strain when compared to 3,434 predicted genes of the wild-type C. glutamicum ATCC 13032 strain. Among them, 110 transitions and 29 transversions of single nucleotide polymorphisms were found from genes of the ATCC 21300 strain. In addition, 11 genes, involved in the L-lysine biosynthetic pathway and central carbohydrate metabolism, contained mutations including single nucleotide polymorphisms and insertions/deletions. Interestingly, RT-PCR analysis of these 11 genes indicated that they were normally expressed in the ATCC 21300 strain. This information of genome-wide gene-associated variations will be useful for genome breeding of C. glutamicum in order to develop an industrial amino acidproducing strain with minimal mutation.
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Citations
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Juhwan Park, Sooa Lim
Microorganisms.2024; 12(8): 1681. CrossRef - Recent advances in the metabolic engineering and physiological opportunities for microbial synthesis of L-aspartic acid family amino acids: A review
Yusheng Wang, Yunlong Bai, Qi Zeng, Zeyuan Jiang, Yuzhe Liu, Xiyan Wang, Xiaoting Liu, Chunlei Liu, Weihong Min
International Journal of Biological Macromolecules.2023; 253: 126916. CrossRef - Obtaining a series of native gradient promoter-5′-UTR sequences in Corynebacterium glutamicum ATCC 13032
Ning Li, Weizhu Zeng, Sha Xu, Jingwen Zhou
Microbial Cell Factories.2020;[Epub] CrossRef - The BFK20 phage replication origin confers a phage-encoded resistance phenotype to the industrial strain Brevibacterium flavum
Gabriela Bukovska, Jana Ugorcakova, Nora Halgasova, Lucia Bocanova, Adela Tkacova
FEMS Microbiology Letters.2019;[Epub] CrossRef - L-lysine production improvement: a review of the state of the art and patent landscape focusing on strain development and fermentation technologies
Fernanda Karine do Carmo Félix, Luiz Alberto Junior Letti, Gilberto Vinícius de Melo Pereira, Pedro Gabriel Borges Bonfim, Vanete Thomaz Soccol, Carlos Ricardo Soccol
Critical Reviews in Biotechnology.2019; 39(8): 1031. CrossRef - Comparative analysis of Corynebacterium glutamicum genomes: a new perspective for the industrial production of amino acids
Junjie Yang, Sheng Yang
BMC Genomics.2017;[Epub] CrossRef - White biotechnology: State of the art strategies for the development of biocatalysts for biorefining
S. Heux, I. Meynial-Salles, M.J. O'Donohue, C. Dumon
Biotechnology Advances.2015; 33(8): 1653. CrossRef - Characterization of a Corynebacterium glutamicum dnaB mutant that shows temperature-sensitive growth and mini-cell formation
Makoto Uchida, Takashi Hirasawa, Masaaki Wachi
Archives of Microbiology.2014; 196(12): 871. CrossRef - Next-generation sequencing-based transcriptome analysis of l-lysine-producing Corynebacterium glutamicum ATCC 21300 strain
Hong-Il Kim, Jae-Young Nam, Jae-Yong Cho, Chang-Soo Lee, Young-Jin Park
Journal of Microbiology.2013; 51(6): 877. CrossRef
- Review of the Proteomics and Metabolic Properties of Corynebacterium glutamicum
- NOTE] Caenimonas terrae sp. nov., Isolated from a Soil Sample in Korea, and Emended Description of the Genus Caenimonas Ryu et al. 2008
- Soo-Jin Kim , Hang-Yeon Weon , Yi-Seul Kim , Ji Young Moon , Soon Ja Seok , Seung-Beom Hong , Soon-Wo Kwon
- J. Microbiol. 2012;50(5):864-868. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-1587-6
- 224 View
- 0 Download
- 14 Scopus
-
Abstract
- A white-coloured bacterium, SGM1-15T, was isolated from a paddy soil sample from Suwon, Republic of Korea. The cells were strictly aerobic, Gram-negative and curved rodshaped. A phylogenetic analysis based on 16S rRNA gene sequences revealed that strain SGM1-15T was closely related to Curvibacter delicatus LMG 4328T (97.6% similarity) and Caenimonas koreensis EMB320T (97.5% similarity). The major respiratory quinone system was Q-8 and the predominant cellular fatty acids were C16:0 (39.9%), summed feature 3 (C16:1 ω7c and/or iso-C15:0 2-OH; 24.3%) and C17:0 cyclo (22.7%). The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. The major polyamines were 2-hydroxypurescine, purescine and spermidine. The DNA G+C content was 68.7 mol%. On the basis of the phylogenetic, physiologicl and chemotaxonomic data, stain SGM1-15T represents a novel species of the genus Caenimonas, for which the name Caenimonas terrae sp. nov. is proposed. The type strain of Caenimonas terrae is SGM1-15T (=KACC 13365T =NBRC 106341T).
- NOTE] Envelope Diversity, Characteristics of V3 Region and Predicted Co-Receptor Usage of Human Immunodeficiency Viruses Infecting North Indians
- Raiees Andrabi , Rajesh Kumar , Manju Bala , Ambili Nair , Prakash SS , Vandana Kushwaha , Kalpana Luthra
- J. Microbiol. 2012;50(5):869-873. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2136-z
- 199 View
- 0 Download
- 8 Crossref
-
Abstract
- Subtypes of human immunodeficiency virus type 1 circulating in 21 north Indian patients were characterized based on the partial sequence of the gp120 envelope protein. A majority of viruses (85.7%, 18/21) were subtype C, while 14.3% (3/21) were subtype A. Sequence analysis revealed that the V3 region was highly conserved compared with V4 and V5. The predicted use of co-receptors indicated exclusive usage of R5, except for two subtype A viruses (AIIMS279 and AIIMS281). Our results demonstrate conservation within the V3 loop of subtype C viruses, and suggest the emergence of non-clade C viruses in the north Indian population.
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Kenanao Kotokwe, Sikhulile Moyo, Melissa Zahralban-Steele, Molly Pretorius Holme, Pinkie Melamu, Catherine Kegakilwe Koofhethile, Wonderful Tatenda Choga, Terence Mohammed, Tapiwa Nkhisang, Baitshepi Mokaleng, Dorcas Maruapula, Tsotlhe Ditlhako, Ontlamets
Viruses.2023; 15(2): 403. CrossRef - Diverse HCV Strains And HIV URFS Identified Amongst People Who Inject Drugs In India
Mary A. Rodgers, Selvamurthi Gomathi, Ana Vallari, Shanmugam Saravanan, Gregory M. Lucas, Shruti Mehta, Sunil S. Solomon, Gavin A. Cloherty
Scientific Reports.2020;[Epub] CrossRef - Cross-neutralizing anti-HIV-1 human single chain variable fragments(scFvs) against CD4 binding site and N332 glycan identified from a recombinant phage library
Lubina Khan, Rajesh Kumar, Ramachandran Thiruvengadam, Hilal Ahmad Parray, Muzamil Ashraf Makhdoomi, Sanjeev Kumar, Heena Aggarwal, Madhav Mohata, Abdul Wahid Hussain, Raksha Das, Raghavan Varadarajan, Jayanta Bhattacharya, Madhu Vajpayee, K. G. Murugavel
Scientific Reports.2017;[Epub] CrossRef - Evolution of cross-neutralizing antibodies and mapping epitope specificity in plasma of chronic HIV-1-infected antiretroviral therapy-naïve children from India
Muzamil A. Makhdoomi, Lubina Khan, Sanjeev Kumar, Heena Aggarwal, Ravinder Singh, Rakesh Lodha, Mohit Singla, Bimal K. Das, Sushil K. Kabra, Kalpana Luthra
Journal of General Virology.2017; 98(7): 1879. CrossRef - Short Communication: Phylogenetic and Molecular Characterization of Six Full-Length HIV-1 Genomes from India Reveals a Monophyletic Lineage of Indian Sub-Subtype A1
Sudhanshu Shekhar Pandey, Sarah Cherian, Madhuri Thakar, Ramesh S. Paranjape
AIDS Research and Human Retroviruses.2016; 32(5): 489. CrossRef - Neutralization resistant HIV-1 primary isolates from antiretroviral naïve chronically infected children in India
Muzamil Ashraf Makhdoomi, Deepti Singh, Ambili Nair Pananghat, Rakesh Lodha, Sushil Kumar Kabra, Kalpana Luthra
Virology.2016; 499: 105. CrossRef - Single genome amplification and standard bulk PCR yield HIV-1 envelope products with similar genotypic and phenotypic characteristics
Behzad Etemad, Melissa Ghulam-Smith, Oscar Gonzalez, Laura F. White, Manish Sagar
Journal of Virological Methods.2015; 214: 46. CrossRef - Highly Efficient Neutralization by Plasma Antibodies from Human Immunodeficiency Virus Type-1 Infected Individuals on Antiretroviral Drug Therapy
Raiees Andrabi, M. A. Makhdoomi, Rajesh Kumar, Manju Bala, Hilal Parray, Arjun Gupta, Ankita Kotnala, Velpandian Thirumurthy, Kalpana Luthra
Journal of Clinical Immunology.2014; 34(4): 504. CrossRef
- Prediction of Coreceptor Tropism in HIV-1 Subtype C in Botswana
- NOTE] Construction and Characterisation of an Antifungal Recombinant Bacillus thuringiensis with an Expanded Host Spectrum
- Qin Liu , Jong Yul Roh , Yong Wang , Jae Young Choi , Xue Ying Tao , Jae Su Kim , Yeon Ho Je
- J. Microbiol. 2012;50(5):874-877. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2201-7
- 210 View
- 0 Download
- 6 Scopus
-
Abstract
- A novel antifungal Bacillus thuringiensis strain 19–22, ssp. kurstaki (H3a3b3c), was characterised. This strain included cry1Aa, cry1Ab, cry1Ac, and cry1D, which have high insecticidal activities against lepidopteran larvae other than Spodoptera exigua. To expand the host spectrum, a cry1E gene whose product is active against S. exigua was introduced into the isolate. The transformant successfully expressed the Cry1E protein without any loss of its original antifungal activities. These results indicate that this recombinant strain exhibits dual activities and may be used as an integrated control agent to control plant diseases and insect pests.
- NOTE] Regulatory Characteristics of the Vibrio vulnificus rtxHCA Operon Encoding a MARTX Toxin
- Jinseo Park , Seung Min Kim , Hee Gon Jeong , Sang Ho Choi
- J. Microbiol. 2012;50(5):878-881. Published online September 21, 2012
- DOI: https://doi.org/10.1007/s12275-012-2479-5
- 242 View
- 0 Download
- 6 Crossref
-
Abstract
- Vibrio vulnificus MARTX encoded by rtxA, an open reading frame of the rtxHCA operon, is essential for virulence in vitro and in mice. In this study, a primer extension analysis revealed that transcription of the rtxHCA operon begins at a single site, and is under the direction of a single promoter, PrtxHCA. PrtxHCA activity appeared at the beginning of growth and reached a maximum in mid-exponential phase. PrtxHCA activity was induced by exposure to INT-407 cells, and the membrane fraction of INT-407 cells was the most effective for the induction.
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Laura Cutugno, Conor O'Byrne, Jan Pané‐Farré, Aoife Boyd
MicrobiologyOpen.2023;[Epub] CrossRef - Vibrio vulnificus PlpA facilitates necrotic host cell death induced by the pore forming MARTX toxin
Changyi Cho, Sanghyeon Choi, Myung Hee Kim, Byoung Sik Kim
Journal of Microbiology.2022; 60(2): 224. CrossRef -
A MARTX Toxin
rtxA
Gene Is Controlled by Host Environmental Signals through a CRP-Coordinated Regulatory Network in Vibrio vulnificus
Zee-Won Lee, Seung-Ho Hwang, Garam Choi, Kyung Ku Jang, Tae Hee Lee, Kyung Min Chung, Byoung Sik Kim, Sang Ho Choi, Caroline S. Harwood
mBio.2020;[Epub] CrossRef - Spatiotemporal Regulation of Vibrio Exotoxins by HlyU and Other Transcriptional Regulators
Byoung Sik Kim
Toxins.2020; 12(9): 544. CrossRef - Low cell density regulator AphA upregulates the expression of Vibrio vulnificus iscR gene encoding the Fe-S cluster regulator IscR
Jong Gyu Lim, Jin Hwan Park, Sang Ho Choi
Journal of Microbiology.2014; 52(5): 413. CrossRef - VvpM, an extracellular metalloprotease of Vibrio vulnificus, induces apoptotic death of human cells
Mi-Ae Lee, Jeong-A Kim, Yu Jin Yang, Mee-Young Shin, Soon-Jung Park, Kyu-Ho Lee
Journal of Microbiology.2014; 52(12): 1036. CrossRef
- Rifampicin‐resistant RpoB S522L Vibrio vulnificus exhibits disturbed stress response and hypervirulence traits
- NOTE] Identification of Chaperones in Freeze Tolerance in Saccharomyces cerevisiae
- Mahendran Chinnamara Naicker , I Seul Jo , Hana Im
- J. Microbiol. 2012;50(5):882-887. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2411-z
- 211 View
- 0 Download
- 10 Scopus
-
Abstract
- Exposure to low temperatures reduces protein folding rates and induces the cold denaturation of proteins. Considering the roles played by chaperones in facilitating protein folding and preventing protein aggregation, chaperones must exist that confer tolerance to cold stress. Here, yeast strains lacking individual chaperones were screened for reduced freezing tolerance. In total, 19 of 82 chaperone-deleted strains tested were more sensitive to freeze-thaw treatment than wild-type cells. The reintroduction of the respective chaperone genes into the deletion mutants recovered the freeze tolerance. The freeze sensitivity of the chaperone-knockout strains was also retained in the presence of 20% glycerol.
Journal Article
- NOTE] Winogradskyella jejuensis sp. nov., a Marine Bacterium Isolated from a Brown Alga Carpopeltis affinis
- Ji-Young Kim , Duck-Chul Oh
- J. Microbiol. 2012;50(5):888-892. Published online November 4, 2012
- DOI: https://doi.org/10.1007/s12275-012-2447-0
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Abstract
- A Gram-negative, orange-pigmented, rod-shaped bacterium, designated strain CP32T was isolated from a brown alga Carpopeltis affinis collected on the coast of Jeju Island, Republic of Korea. The isolate grew at 10–37°C (optimum 25°C) and at pH 6.5–9.5 (optimum pH 7.0). The 16S rRNA gene sequence of the isolate showed much similarity with the type strains of recognized species of the genus Winogradskyella (94.0–96.6%). The most closely related species were Winogradskyella echinorum KMM 6211T, Winogradskyella ulvae KMM 6390T, Winogradskyella thalassocola KMM 3907T, Winogradskyella poriferorum UST030701-295T, and Winogradskyella eximia KMM 3944T. The major respiratory quinone was menaquinone-6 (MK-6) and the predominant cellular fatty acids were iso-C15:1 G (24.8%), iso-C15:0 (23.4%), and iso-C17:0 3-OH (11.6 %). The DNA G+C content was 33.3 mol%. The polar lipid profile was composed of phosphatidylethanolamine, two aminolipids, and five unknown lipids. On the basis of phenotypic features, and the result of 16S rRNA gene sequence analysis, strain CP32T (=KCTC 23835T =JCM 18454T) represents a novel species of the genus Winogradskyella, for which the name Winogradskyella jejuensis sp. nov. is proposed.
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Citations
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- Erratum] Phycicoccus ochangensis sp. nov., Isolated from Soil of a Potato Cultivation Field
- Hyangmi Kim , Hyun-Woo Oh , Doo-Sang Park , Kang Hyun Lee , Sung Uk Kim , Hee-Moon Park , Kyung Sook Bae Bae
- J. Microbiol. 2012;50(5):893-893.
- 165 View
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Abstract
- In the article by Kim et al. that appears in the Journal of Microbiology 2012; 50, 349-353. KCTC number on page 349 (abstract line 19) and page 353 (left paragraph line 32) should read as KCTC 19695 not KCTC 19694, and on page 353 (left paragraph line 33) should read as KCTC 19694 not KCTC 19695.
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