Journal of Microbiology

Volume 48(5); October 2010

Research Support, Non-U.S. Gov'ts

Genomic Diversity of Legionella pneumophila Serogroup 1 from Environmental Water Sources and Clinical Specimens Using Pulsed-Field Gel Electrophoresis (PFGE) from 1985 to 2007, Korea: Hae Kyung Lee , Yeon Ho Kang , Jae Yon Yu; J. Microbiol. 2010;48(5):547-553. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0031-z

51 View
0 Download
3 Scopus

Abstract: The molecular typing of 202 Legionella pneumophila sg 1 isolates obtained from environmental water sources and clinical specimens from 1985 to 2007 was conducted using pulsed-field gel electrophoresis (PFGE). In this study, a total of 212 isolates were grouped into 35 different PFGE types and Type 1 was the predominant type, accounting for 28.7% in PFGE types. Type 1 and Type 8 were observed continuously from 1985 to 2007. In the analysis of the distribution of PFGE types in six geographic regions (Seoul-Incheon, Gangwon, Chungcheong, Gyeongsang, Jeolla, and Jeju), Type 1 was predominant throughout four regions except for Jeolla and Jeju, and Type 6 was observed in four regions except two regions (Gangwon and Jeju). Six clinical isolates belonged to PFGE Type 1, Type 6, Type 9, and Type 15. Type 1 among these types, was isolated from 3 patients with confirmed nosocomial infection at the hospital and Type 6, Type 9, and Type 15 were isolated 3 patients with suspected community-acquired infection. Type R, PFGE pattern of L. pneumophila sg 1 (ATCC 33152, Philadelphia-1), was not observed in the isolates evaluated in this study. Therefore, our results suggest that PFGE Type 1 was very prevalent in the environmental and clinical isolates in Korea. Type 1 was distributed continuously for many years throughout Korea.

Detection of Xanthomonas arboricola pv. pruni by PCR Using Primers Based on DNA Sequences Related to the hrp Genes: So Yeon Park , Young Sun Lee , Young Jin Koh , Jae-Sun Hur , Jae Sung Jung; J. Microbiol. 2010;48(5):554-558. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0072-3

52 View
0 Download
14 Crossref

Efficient control of Xanthomonas arboricola pv. pruni, the causal agent of bacterial spot on stone fruit, requires a sensitive and reliable diagnostic tool. A PCR detection method that utilizes primers to target the hrp gene cluster region was developed in this study. The nucleotide sequence of the PCR product amplified with primers specific for the hrp region of the xanthomonads and genomic DNA of X. arboricola pv. pruni was determined, and the sequence was aligned with that of X. campestris pv. campestris, which was obtained from the GenBank database. On the basis of the sequence of the amplified hrp region, a PCR primer set of XapF/R specific to X. arboricola pv. pruni was designed. This primer set yielded a 243-bp product from the genomic DNA of X. aboricola pv. pruni strains, but no products from other 21 strains of Xanthomonas or from two epiphytic bacterial species. Southern blot hybridization with the probe derived from the PCR product with the primer set and X. aboricola pv. pruni DNA confirmed the PCR results. The Xap primer system was successfully applied to detect the pathogen from infected peach fruits. When it was applied in field samples, the primer set was proved as a reliable diagnostic tool for specific detection of X. aboricola pv. pruni from peach orchards.

Citations

Citations to this article as recorded by

Advancing Sustainable Management of Bacterial Spot of Peaches: Insights into Xanthomonas arboricola pv. pruni Pathogenicity and Control Strategies
Nanami Sakata, Yasuhiro Ishiga
Bacteria.2025; 4(2): 27. CrossRef
Multiplex lateral flow immunoassay for simultaneous detection and specific discrimination of Xoo and Xoc in rice plants
Cui Zhang, Xi Zhang, Nairu Liu, Jie Dong, Weijia Mao, Zhaoli Liu, Xueping Zhou, Jianxiang Wu
Talanta.2025; 292: 127917. CrossRef
Development of a Long-Amplicon Propidium Monoazide–Quantitative PCR Assay for Detection of Viable Xanthomonas arboricola pv. pruni Cells in Peach Trees
Milan Panth, Enoch Noh, Guido Schnabel, Hehe Wang
Plant Disease.2024; 108(7): 2190. CrossRef
Selection of target genes for pcr diagnostics of Xanthomonas arboricola virulent for cereals and brassicas
E. I. Kyrova*, A. N. Ignatov
PLANT PROTECTION NEWS.2021; 104(2): 87. CrossRef
Recombinase Polymerase Amplification/Cas12a-Based Identification of Xanthomonas arboricola pv. pruni on Peach
Mei Luo, Fan-Zhu Meng, Qin Tan, Wei-Xiao Yin, Chao-Xi Luo
Frontiers in Plant Science.2021;[Epub] CrossRef
Trends in Molecular Diagnosis and Diversity Studies for Phytosanitary Regulated Xanthomonas
Vittoria Catara, Jaime Cubero, Joël F. Pothier, Eran Bosis, Claude Bragard, Edyta Đermić, Maria C. Holeva, Marie-Agnès Jacques, Francoise Petter, Olivier Pruvost, Isabelle Robène, David J. Studholme, Fernando Tavares, Joana G. Vicente, Ralf Koebnik, Joana
Microorganisms.2021; 9(4): 862. CrossRef
Species of the genus Xanthomonas infecting cereals and oilseeds in the Russian Federation and its diagnostics
Elena Kyrova, Maria Egorova, Alexander Ignatov, Y. Tokarev, V. Glupov
BIO Web of Conferences.2020; 18: 00017. CrossRef
Loop-Mediated Isothermal Amplification for the Detection of Xanthomonas arboricola pv. pruni in Peaches
Weilan Li, Seung-Yeol Lee, Chang-Gi Back, Leonid N. Ten, Hee-Young Jung
The Plant Pathology Journal.2019; 35(6): 635. CrossRef
Lateral flow immunoassay for on-site detection of Xanthomonas arboricola pv. pruni in symptomatic field samples
Pablo López-Soriano, Patricia Noguera, María Teresa Gorris, Rosa Puchades, Ángel Maquieira, Ester Marco-Noales, María M. López, Ulrich Melcher
PLOS ONE.2017; 12(4): e0176201. CrossRef
Pan-Genomic Analysis Permits Differentiation of Virulent and Non-virulent Strains of Xanthomonas arboricola That Cohabit Prunus spp. and Elucidate Bacterial Virulence Factors
Jerson Garita-Cambronero, Ana Palacio-Bielsa, María M. López, Jaime Cubero
Frontiers in Microbiology.2017;[Epub] CrossRef
Development of a nanostructured immunosensor for early and in situ detection of Xanthomonas arboricola in agricultural food production
Matías Regiart, Martin Rinaldi-Tosi, Pedro R. Aranda, Franco A. Bertolino, Jhonny Villarroel-Rocha, Karim Sapag, Germán A. Messina, Julio Raba, Martín A. Fernández-Baldo
Talanta.2017; 175: 535. CrossRef
Detection and identification of Xanthomonas arboricola pv. pruni from symptomless plant material: results of an Italian test performance study
S. Loreti, N. Pucci, G. Perez, V. Catara, M. Scortichini, P. Bella, P. Ferrante, D. Giovanardi, E. Stefani
EPPO Bulletin.2015; 45(1): 41. CrossRef
The Best Spray Timing for the Control of the Bacterial Shot Hole with Bordeaux mixture (6-6) after Wintering in the Peach Orchard
San Yeong Kim, Won Heum Park, Hee Jung Son, Suk Hee Lee, Young Woon Song, So Deuk Park
The Korean Journal of Pesticide Science.2015; 19(2): 106. CrossRef
A duplex-PCR method for species- and pathovar-level identification and detection of the quarantine plant pathogen Xanthomonas arboricola pv. pruni
J.F. Pothier, M.C. Pagani, C. Pelludat, D.F. Ritchie, B. Duffy
Journal of Microbiological Methods.2011; 86(1): 16. CrossRef

Diversity of Endophytic Bacteria in Ginseng and Their Potential for Plant Growth Promotion: Regupathy Thamizh Vendan , Young Joon Yu , Sun Hee Lee , Young Ha Rhee; J. Microbiol. 2010;48(5):559-565. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0082-1

70 View
0 Download
127 Crossref

Abstract

Endophytic bacteria have been found in virtually every plant studied, where they colonize the internal tissues of their host plant and can form a range of different beneficial relationships. The diversity of bacterial endophytes associated with ginseng plants of varying age levels in Korea was investigated. Fifty-one colonies were isolated from the interior of ginseng stems. Although a mixed composition of endophyte communities was recovered from ginseng based on the results of 16S rDNA analysis, bacteria of the genus Bacillus and Staphylococcus dominated in 1-year-old and 4-year-old plants, respectively. Phylogenetic analysis revealed four clusters: Firmicutes, Actinobacteria, α-Proteobacteria, and γ-Proteobacteria, with Firmicutes being predominant. To evaluate the plant growth promoting activities, 18 representative isolates were selected. Amplification of nifH gene confirmed the presence of diazotrophy in only two isolates. Half of the isolates solubilized mineral phosphate. Except four, all the other endophytic isolates produced significant amounts of indole acetic acid in nutrient broth. Iron sequestering siderophore production was detected in seven isolates. Isolates E-I-3 (Bacillus megaterium), E-I-4 (Micrococcus luteus), E-I-8 (B. cereus), and E-I-20 (Lysinibacillus fusiformis) were positive for most of the plant growth promoting traits, indicating their role in growth promotion of ginseng.

Citations

Citations to this article as recorded by

Microbiome and Metabolome Illustrate the Correlations Between Endophytes and Flavor Metabolites in Passiflora ligularis Fruit Juice
Meijun Qi, Xuedong Shi, Wenlong Huang, Qilong Wei, Zhenwei Zhang, Rongqi Zhang, Shilang Dong, Sumera Anwar, Hafiz Faiq Bakhat, Butian Wang, Yu Ge
International Journal of Molecular Sciences.2025; 26(5): 2151. CrossRef
Coating Seeds with Paenibacillus polymyxa ZF129 Microcapsule Suspension Enhanced Control Effect on Fusarium Root Rot and Promoted Seedling Growth in Cucumber
Jiayi Ma, Jialin Liu, Yanxia Shi, Xuewen Xie, Ali Chai, Sheng Xiang, Xianhua Sun, Lei Li, Baoju Li, Tengfei Fan
Biology.2025; 14(4): 375. CrossRef
Correlation Analysis Between the Growth of Wild-Simulated Ginseng and the Soil Bacterial Community in the Central Region of South Korea
Kiyoon Kim, Yeong-Bae Yun, Myeongbin Park, Yurry Um
Applied Sciences.2025; 15(7): 3465. CrossRef
Characterization of phosphate solubilizing rhizobacteria Lysinibacillus boronitolerans PSLR2
Sharon Maria Jacob, Srilakshmi Lelapalli, Sripriya Paranthaman
Vegetos.2025;[Epub] CrossRef
Characterization of PGPR from rhizospheric soil of some vegetable crops cultivated at Sylhet district of Bangladesh
Saima Sadia Jui, Rakibul Hasan, Israt Jahan Ema, Hasan Tareq Nasim, Md. Monirul Islam
International Journal of Agriculture Environment and Food Sciences.2025; 9(1): 132. CrossRef
Bacillus subtilis ge28, a potential biocontrol agent for controlling rust rot in Panax ginseng caused by Cylindrocarpon destructans
Yuan Gao, Junchi Wang, Shan Zhong, Rong Wang, Jianhe Wei, Wanlong Ding, Yong Li
Medicinal Plant Biology.2025;[Epub] CrossRef
Potential participants and regulatory factors in ginsenoside biosynthesis of Panax ginseng C.A. Meyer: The role of endophytic fungus PBF-08
Jinghui Yu, Dinghui Wang, Tiantian Zhao, Xiaochen Yu, Sizhang Liu, Yanfang Wang, Kangyu Wang, Mingzhu Zhao, Ping Chen, Yi Wang, Meiping Zhang
Plant Science.2025; 358: 112553. CrossRef
Ancient bayberry increased stress resistance by enriching tissue‐specific microbiome and metabolites
Gang Li, Zhenshuo Wang, Haiying Ren, Xingjiang Qi, Hao Han, Xiangyang Ding, Li Sun, Rahila Hafeez, Qi Wang, Bin Li
Physiologia Plantarum.2024;[Epub] CrossRef
Comparative physiological and transcriptomic analyses provide induction resistance mechanisms of Bacillus tequilensis against Colletotrichum fructicola in Camellia oleifera
Aiting Zhou, Junrong Tang, Qianjie Du, Jia Deng, Jianrong Wu, Huancheng Ma, Fang Wang
Plant Physiology and Biochemistry.2024; 214: 108912. CrossRef
Temporal patterns of endophytic microbial heterogeneity across distinct ecological compartments within the Panax ginseng root system following deforestation for cultivation
Zhenting Shi, Limin Yang, Meiling Yang, Kexin Li, Li Yang, Mei Han
Frontiers in Microbiology.2024;[Epub] CrossRef
Comparative Genome Analyses Provide Insight into the Antimicrobial Activity of Endophytic Burkholderia
Jiayuan Jia, Shi-En Lu
Microorganisms.2024; 12(1): 100. CrossRef
The utilization of Lysinibacillus bacterial powder to induce Fe plaque formation mitigates cadmium and chromium levels in rice
Qing Xu, Yuxiao Zhang, Ruijia Yang, Jinfang Li, Jiongxi Chen, Jingyi Wang, Gejiao Wang, Mingshun Li, Kaixiang Shi
Journal of Hazardous Materials.2024; 463: 132825. CrossRef
Plant endophytes: unveiling hidden applications toward agro-environment sustainability
Rajeshwari Negi, Babita Sharma, Sanjeev Kumar, Kundan Kumar Chaubey, Tanvir Kaur, Rubee Devi, Ashok Yadav, Divjot Kour, Ajar Nath Yadav
Folia Microbiologica.2024; 69(1): 181. CrossRef
Effects of a co-bacterial agent on the growth, disease control, and quality of ginseng based on rhizosphere microbial diversity
Xinyue Li, Qun Liu, Yugang Gao, Pu Zang, Tong Zheng
BMC Plant Biology.2024;[Epub] CrossRef
Temporal heterogeneity of the root microbiome in Panax ginseng soils across ecological compartments under mild soil disturbance
Zhenting Shi, Limin Yang, Meiling Yang, Kexin Li, Li Yang, Mei Han
Frontiers in Microbiology.2024;[Epub] CrossRef
Isolation of endophytes from Dioscorea nipponica Makino for stimulating diosgenin production and plant growth
Shangni Dang, Jiang Geng, Ran Wang, Yumei Feng, Youzhi Han, Runmei Gao
Plant Cell Reports.2024;[Epub] CrossRef
Lysinibacillus pinottii sp. nov., a novel species with anti-mosquito and anti-mollusk activity
Christopher A. Dunlap, Eric T. Johnson, Marleny Burkett-Cadena, Johanna Cadena, Ephantus J. Muturi
Antonie van Leeuwenhoek.2024;[Epub] CrossRef
Evaluating Native Bacillus Strains as Potential Biocontrol Agents against Tea Anthracnose Caused by Colletotrichum fructicola
Meixia Chen, Hui Lin, Weifan Zu, Lulu Wang, Wenbo Dai, Yulin Xiao, Ye Zou, Chengkang Zhang, Wei Liu, Xiaoping Niu
Plants.2024; 13(20): 2889. CrossRef
Genomics- and Transcriptomics-Guided Discovery of Clavatols from Arctic Fungi Penicillium sp. MYA5
Yuan-Yuan Sun, Bo Hu, Hao-Bing Yu, Jing Zhou, Xian-Chao Meng, Zhe Ning, Jin-Feng Ding, Ming-Hui Cui, Xiao-Yu Liu
Marine Drugs.2024; 22(6): 236. CrossRef
An endophytic Paenibacillus polymyxa hg18 and its biocontrol potential against Fusarium oxysporum f. sp. cucumerinum
Fengfeng Cai, Chengde Yang, Ting Ma, Richard osei, Mengjun Jin, Cuiwen Zhang, Yidan Wang
Biological Control.2024; 188: 105380. CrossRef
Impact of Growth-Promoting Endophytic Bacteria on Ginger Plant Growth
Dilfuza Jabborova, Kakhramon Davranov, Zafarjon Jabbarov, Yuriy Enakiev, Tokhtasin Abdrakhmanov, Rahul Datta, Sachidanand Singh, Mohammad Shah Jahan, Sezai Ercisli, Namita Singh
Indian Journal of Microbiology.2024;[Epub] CrossRef
Relationships between endophytic bacteria and medicinal plants on bioactive compounds production
Thanh-Dung Nguyen, Thi-Tho Nguyen, Minh-Nhut Pham, Huu-Nghia Duong, Thuy-Trang Pham, Thi-Pha Nguyen, Phu-Tho Nguyen, To-Uyen Thi Nguyen, Huu-Hiep Nguyen, Huu-Thanh Nguyen
Rhizosphere.2023; 27: 100720. CrossRef
Endophytic Bacteria Isolated from Tea Leaves (Camellia sinensis var. assamica) Enhanced Plant-Growth-Promoting Activity
Md. Humayun Kabir, Kridsada Unban, Pratthana Kodchasee, Rasiravathanahalli Kaveriyappan Govindarajan, Saisamorn Lumyong, Nakarin Suwannarach, Pairote Wongputtisin, Kalidas Shetty, Chartchai Khanongnuch
Agriculture.2023; 13(3): 533. CrossRef
A microecological research reveals seasonal variation in rhizosphere-endophytic bacteria and growth and development of Codonopsis pilosula root
Feifan Leng, Bo Zhang, Xinqiang Zhu, Zhiqiang Kong, Xiaoli Wang, Yonggang Wang
Rhizosphere.2023; 28: 100805. CrossRef
Plants and endophytes interaction: a “secret wedlock” for sustainable biosynthesis of pharmaceutically important secondary metabolites
Poonam Kumari, Nikky Deepa, Prabodh Kumar Trivedi, Brajesh K. Singh, Vaibhav Srivastava, Akanksha Singh
Microbial Cell Factories.2023;[Epub] CrossRef
Lysinibacillus spp.: an IAA-producing endospore forming-bacteria that promotes plant growth
Manuel Pantoja-Guerra, Marleny Burkett-Cadena, Johanna Cadena, Christopher A. Dunlap, Camilo A. Ramírez
Antonie van Leeuwenhoek.2023; 116(7): 615. CrossRef
Antagonistic Activity and Potential Mechanisms of Endophytic Bacillus subtilis YL13 in Biocontrol of Camellia oleifera Anthracnose
Yandong Xia, Junang Liu, Zhikai Wang, Yuan He, Qian Tan, Zhuang Du, Anqi Niu, Manman Liu, Zhong Li, Mengke Sang, Guoying Zhou
Forests.2023; 14(5): 886. CrossRef
Endophytic Bacteria; Diversity, Characterization and Role in Agriculture
Hanaa A. Abo-Koura
Journal of Basic & Applied Sciences.2023; 19: 116. CrossRef
Rice endophytic communities are strongly dependent on microbial communities specific to each soil
Solomon Oloruntoba Samuel, Kazuki Suzuki, Rasit Asiloglu, Naoki Harada
Biology and Fertility of Soils.2023; 59(7): 733. CrossRef
Characterization of Weizmannia ginsengihumi LGHNH from Wild-Ginseng and Anti-Aging Effects of Its Cultured Product
Minjung Kwon, Hyejin Lee, So Young Lee, Mu Hyun Jin
Microbiology and Biotechnology Letters.2022; 50(3): 414. CrossRef
Occidiofungin Is the Key Metabolite for Antifungal Activity of the Endophytic Bacterium Burkholderia sp. MS455 Against Aspergillus flavus
Jiayuan Jia, Emerald Ford, Sarah M. Hobbs, Sonya M. Baird, Shi-En Lu
Phytopathology®.2022; 112(3): 481. CrossRef
Diversity and Bioactivity of Endophytic Actinobacteria Associated with Grapevines
Patanun Kanjanamaneesathian, Anish Shah, Hayley Ridgway, E. Eirian Jones
Current Microbiology.2022;[Epub] CrossRef
Prospecting potential of endophytes for modulation of biosynthesis of therapeutic bioactive secondary metabolites and plant growth promotion of medicinal and aromatic plants
Devendra Singh, Shobit Thapa, Himanshu Mahawar, Dharmendra Kumar, Neelam Geat, S. K. Singh
Antonie van Leeuwenhoek.2022; 115(6): 699. CrossRef
Plant-Growth-Promoting Potential of PGPE Isolated from Dactylis glomerata L.
Chaowen Zhang, Kai Cai, Mengyuan Li, Jiaqi Zheng, Yuzhu Han
Microorganisms.2022; 10(4): 731. CrossRef
Seed inhabiting bacterial endophytes of maize promote seedling establishment and provide protection against fungal disease
Gaurav Pal, Kanchan Kumar, Anand Verma, Satish Kumar Verma
Microbiological Research.2022; 255: 126926. CrossRef
Diversity of epiphytic bacterial communities on male and female Sargassum thunbergii
Jing Wang, Zhibo Yang, Gaoge Wang, Shuai Shang, Xuexi Tang, Hui Xiao
AMB Express.2022;[Epub] CrossRef
Characterization of the Cultivable Endophytic Bacterial Community of Seeds and Sprouts of Cannabis sativa L. and Perspectives for the Application as Biostimulants
Morena Gabriele, Francesco Vitali, Elisa Chelucci, Carolina Chiellini
Microorganisms.2022; 10(9): 1742. CrossRef
Bacterial Endophytes Contribute to Rice Seedling Establishment Under Submergence
Germán Darío Ahumada, Eva María Gómez-Álvarez, Matteo Dell’Acqua, Iris Bertani, Vittorio Venturi, Pierdomenico Perata, Chiara Pucciariello
Frontiers in Plant Science.2022;[Epub] CrossRef
Antifungal action and induction of resistance by Bacillus sp. strain YYC 155 against Colletotrichum fructicola for control of anthracnose disease in Camellia oleifera
Aiting Zhou, Fang Wang, Jiabi Yin, Ruiqi Peng, Jia Deng, Dezhou Shen, Jianrong Wu, Xiaoyun Liu, Huancheng Ma
Frontiers in Microbiology.2022;[Epub] CrossRef
Effects of cultivation soils and ages on microbiome in the rhizosphere soil of Panax ginseng
Chao He, Rong Wang, Wanlong Ding, Yong Li
Applied Soil Ecology.2022; 174: 104397. CrossRef
Wild Panax plants adapt to their thermal environment by harboring abundant beneficial seed endophytic bacteria
Dong Liu, Liang Lin, Tie Zhang, Qian Xu, Mulan Wang, Minghai Gao, Parag Bhople, Hugh W. Pritchard, Xiangyun Yang, Fuqiang Yu
Frontiers in Ecology and Evolution.2022;[Epub] CrossRef
The Endosphere Microbiome of Ginseng
Paul H. Goodwin
Plants.2022; 11(3): 415. CrossRef
Characterization of root endophytic Paenibacillus polymyxa isolates with biocontrol activity against Xanthomonas translucens and Fusarium graminearum
Elaheh Taheri, Saeed Tarighi, Parissa Taheri
Biological Control.2022; 174: 105031. CrossRef
Lysinibacilli: A Biological Factories Intended for Bio-Insecticidal, Bio-Control, and Bioremediation Activities
Qazi Mohammad Sajid Jamal, Varish Ahmad
Journal of Fungi.2022; 8(12): 1288. CrossRef
Lysinibacillus xylanilyticus Strain GIC41 as a Potential Plant Biostimulant
Nusrat Ahsan, Malek Marian, Haruhisa Suga, Masafumi Shimizu
Microbes and Environments.2021; 36(4): n/a. CrossRef
Efficiency of the Hydroponic System as an Approach to Confirm the Solubilization of CaHPO4 by Microbial Strains Using Glycine max as a Model
Mateus Neri Oliveira Reis, Layara Alexandre Bessa, Andressa Pereira de Jesus, Fabiano Guimarães Silva, Marialva Alvarenga Moreira, Luciana Cristina Vitorino
Frontiers in Plant Science.2021;[Epub] CrossRef
Multiple Plant Growth-Promotion Traits in Endophytic Bacteria Retrieved in the Vegetative Stage From Passionflower
Luis Gabriel Cueva-Yesquén, Marcela Cristina Goulart, Derlene Attili de Angelis, Marcos Nopper Alves, Fabiana Fantinatti-Garboggini
Frontiers in Plant Science.2021;[Epub] CrossRef
Search for antagonists to protect plant raw materials from pathogens
L R Valiullin, V Y Titova, E V Skvortsov, R S Muhammadiev, S Z Validov, V Y Rud, V.V. Davydov, A P Glinushkin
IOP Conference Series: Earth and Environmental Science.2021; 663(1): 012005. CrossRef
Bioprospecting of endophytic bacteria from nodules and roots of Vigna radiata, Vigna unguiculata and Cajanus cajan for their potential use as bioinoculants
Namita Bhutani, Rajat Maheshwari, Pradeep Kumar, Pooja Suneja
Plant Gene.2021; 28: 100326. CrossRef
Biotransformation of ginsenoside Rc to Rd by endophytic bacterium Bacillus sp. G9y isolated from Panax quinquefolius
Chen Zhang, Yanyan Xu, Mengmeng Gu, Zhenzhen Liu, Jingyuan Zhang, Qi Zeng, Daheng Zhu
Antonie van Leeuwenhoek.2021; 114(4): 437. CrossRef
Plant Growth-Promoting Endophytic Bacterial Community Inhabiting the Leaves of Pulicaria incisa (Lam.) DC Inherent to Arid Regions
Amr Fouda, Ahmed M. Eid, Albaraa Elsaied, Ehab F. El-Belely, Mohammed G. Barghoth, Ehab Azab, Adil A. Gobouri, Saad El-Din Hassan
Plants.2021; 10(1): 76. CrossRef
Community Analysis-based Screening of Plant Growth-promoting Bacteria for Sugar Beet
Kazuyuki Okazaki, Hirohito Tsurumaru, Megumi Hashimoto, Hiroyuki Takahashi, Takashi Okubo, Takuji Ohwada, Kiwamu Minamisawa, Seishi Ikeda
Microbes and Environments.2021; 36(2): n/a. CrossRef
Characterization of Lysinibacillus fusiformis strain S4C11: In vitro, in planta, and in silico analyses reveal a plant-beneficial microbe
Alessandro Passera, Marzia Rossato, John S. Oliver, Giovanna Battelli, Gul-I-Rayna Shahzad, Emanuela Cosentino, Jay M. Sage, Silvia L. Toffolatti, Giulia Lopatriello, Jennifer R. Davis, Michael D. Kaiser, Massimo Delledonne, Paola Casati
Microbiological Research.2021; 244: 126665. CrossRef
Lysinibacillus Species: Their Potential as Effective Bioremediation, Biostimulant, and Biocontrol Agents
Nusrat Ahsan, Masafumi Shimizu
Reviews in Agricultural Science.2021; 9: 103. CrossRef
Endophytic bacterial communities and spatiotemporal variations in cotton roots in Xinjiang, China
YingWu Shi, HongMei Yang, Ming Chu, XinXiang Niu, XiangDong Huo, Yan Gao, Qing Lin, Jun Zeng, Tao Zhang, Kai Lou
Canadian Journal of Microbiology.2021; 67(7): 506. CrossRef
Endophytes from Panax species
Rufin Marie Kouipou Toghueo, Diane Yimta Youmbi, Fabrice Fekam Boyom
Biocatalysis and Agricultural Biotechnology.2021; 31: 101882. CrossRef
Beneficial Relationships Between Endophytic Bacteria and Medicinal Plants
Wei Wu, Wenhua Chen, Shiyu Liu, Jianjun Wu, Yeting Zhu, Luping Qin, Bo Zhu
Frontiers in Plant Science.2021;[Epub] CrossRef
Harnessing Bacterial Endophytes for Promotion of Plant Growth and Biotechnological Applications: An Overview
Ahmed M. Eid, Amr Fouda, Mohamed Ali Abdel-Rahman, Salem S. Salem, Albaraa Elsaied, Ralf Oelmüller, Mohamed Hijri, Arnab Bhowmik, Amr Elkelish, Saad El-Din Hassan
Plants.2021; 10(5): 935. CrossRef
Biotechnological potential of endophytic bacteria of bamboo Guadua sp. for promotion of growth of micropropagated yam plants (Dioscorea rotundata Poir)
Sonia Maria Lima Santos do Vale, Amauri Siviero, Lauro Saraiva Lessa, Eduardo Pacca Luna Mattar, Paulo Arthur Almeida do Vale
AIMS Agriculture and Food.2020; 5(4): 850. CrossRef
Characterization of endophytic bacterial communities within greenhouse and field-grown rhizomes of three rare pitcher plant species (Sarracenia oreophila, S. leucophylla, and S. purpurea spp. venosa) with an emphasis on nitrogen-fixing bacteria
W. K. Sexton, M. Fidero, J. C. Spain, L. Jiang, K. Bucalo, J. M. Cruse-Sanders, G. S. Pullman
Plant and Soil.2020; 447(1-2): 257. CrossRef
Isolation and identification of endophytic fungi in walnut
Xiaoyue Wang, Kehang Li, Mengmeng Han, Wenyu Zhang, Xiaoyan Li, Dongshuo Ma, Fang Wang, Meixia Pang, Jinghua Qi
IOP Conference Series: Earth and Environmental Science.2020; 508(1): 012138. CrossRef
The invisible life inside plants: Deciphering the riddles of endophytic bacterial diversity
Jakub Papik, Magdalena Folkmanova, Marketa Polivkova-Majorova, Jachym Suman, Ondrej Uhlik
Biotechnology Advances.2020; 44: 107614. CrossRef
Seasonal Variation Influence Endophytic Actinobacterial Communities of Medicinal Plants from Tropical Deciduous Forest of Meghalaya and Characterization of Their Plant Growth-Promoting Potentials
Dina Barman, Mamtaj S. Dkhar
Current Microbiology.2020; 77(8): 1689. CrossRef
Evolutionary insights into adaptation of Staphylococcus haemolyticus to human and non-human niches
Vasvi Chaudhry, Prabhu B. Patil
Genomics.2020; 112(2): 2052. CrossRef
Soil nutrition, microbial composition and associated soil enzyme activities in KwaZulu-Natal grasslands and savannah ecosystems soils
Ntuthuko S. Zungu, Samson O. Egbewale, Ademola O. Olaniran, María Pérez-Fernández, Anathi Magadlela
Applied Soil Ecology.2020; 155: 103663. CrossRef
Characterization of bacterial communities associated with the exotic and heavy metal tolerant wetland plant Spartina alterniflora
Ying Yang, Jian Ding, Yulang Chi, Jianjun Yuan
Scientific Reports.2020;[Epub] CrossRef
The Effect of Auxin and Auxin-Producing Bacteria on the Growth, Essential Oil Yield, and Composition in Medicinal and Aromatic Plants
Ramazan Çakmakçı, Goltay Mosber, Ada Hazal Milton, Fırat Alatürk, Baboo Ali
Current Microbiology.2020; 77(4): 564. CrossRef
Kaya fosfat ve TSP gübresi ile uygulanan Micrococcus luteus AR-72'nin toprağın bazı biyolojik özellikleri, NO3 ve alınabilir P içeriğine etkisi
Betül BAYRAKLI
Toprak Bilimi ve Bitki Besleme Dergisi.2020; 8(2): 157. CrossRef
Lysinibacillus capsici sp. nov, isolated from the rhizosphere of a pepper plant
Marleny Burkett-Cadena, Leonardo Sastoque, Johanna Cadena, Christopher A. Dunlap
Antonie van Leeuwenhoek.2019; 112(8): 1161. CrossRef
Endophytic Bacteria in Plant Salt Stress Tolerance: Current and Future Prospects
Anukool Vaishnav, Awadhesh K. Shukla, Anjney Sharma, Roshan Kumar, Devendra K. Choudhary
Journal of Plant Growth Regulation.2019; 38(2): 650. CrossRef
Metagenomic analysis of bacterial endophyte community structure and functions in Panax ginseng at different ages
Chi Eun Hong, Jang Uk Kim, Jung Woo Lee, Kyong Hwan Bang, Ick Hyun Jo
3 Biotech.2019;[Epub] CrossRef
Foliar Application of Iron Fortified Bacteriosiderophore Improves Growth and Grain Fe Concentration in Wheat and Soybean
Sandeep Sharma, Subhash Chandra, Arun Kumar, Prem Bindraban, Anil Kumar Saxena, Veena Pande, Renu Pandey
Indian Journal of Microbiology.2019; 59(3): 344. CrossRef
Associative diazotrophic bacteria from forage grasses in the Brazilian semi-arid region are effective plant growth promoters
Gabiane dos Reis Antunes, Sheilla Rios Assis Santana, Indra Elena Costa Escobar, Marivaine da Silva Brasil, Gherman Garcia Leal de Araújo, Tadeu Vinhas Voltolini, Paulo Ivan Fernandes-Júnior
Crop and Pasture Science.2019; 70(10): 899. CrossRef
Exploring Actinobacteria Associated With Rhizosphere and Endosphere of the Native Alpine Medicinal Plant Leontopodium nivale Subspecies alpinum
Martina Oberhofer, Jaqueline Hess, Marlene Leutgeb, Florian Gössnitzer, Thomas Rattei, Christoph Wawrosch, Sergey B. Zotchev
Frontiers in Microbiology.2019;[Epub] CrossRef
Plant growth promoting bacteria increases biomass, effective constituent, and modifies rhizosphere bacterial communities of Panax ginseng
Wenxiu Ji, Xue Leng, Zhengxun Jin, Hulin Li
Acta Agriculturae Scandinavica, Section B — Soil & Plant Science.2019; 69(2): 135. CrossRef
Culturable endophytic bacteria ofCamelliaspecies endowed with plant growth promoting characteristics
A. Borah, R. Das, R. Mazumdar, D. Thakur
Journal of Applied Microbiology.2019; 127(3): 825. CrossRef
Separating and Purifying of Endophytic Fungi from Ginkgo Biloba and Screening of Flavonoid-Producing Strains
X.Y. Zhang, X. Li, M.M. Han, Z.Y. Cai, X. Gao, M.X. Pang, J.H. Qi, F. Wang
IOP Conference Series: Earth and Environmental Science.2019; 371(4): 042052. CrossRef
Functional diversity of cultivable endophytes from Cicer arietinum and Pisum sativum: Bioprospecting their plant growth potential
Rajat Maheshwari, Namita Bhutani, Anuradha Bhardwaj, Pooja Suneja
Biocatalysis and Agricultural Biotechnology.2019; 20: 101229. CrossRef
Lysinibacillus sphaericusas a Nutrient Enhancer during Fire-Impacted Soil Replantation
A. M. Aguirre-Monroy, J. C. Santana-Martínez, J. Dussán
Applied and Environmental Soil Science.2019; 2019: 1. CrossRef
Comparison of specific endophytic bacterial communities in different developmental stages of Passiflora incarnata using culture‐dependent and culture‐independent analysis
Marcela C. Goulart, Luis G. Cueva‐Yesquén, Kelly J. Hidalgo Martinez, Derlene Attili‐Angelis, Fabiana Fantinatti‐Garboggini
MicrobiologyOpen.2019;[Epub] CrossRef
Diversity and antifungal activity of endophytic bacteria associated with Panax ginseng seedlings
Chi Eun Hong, Sung Hee Jo, Ick-Hyun Jo, Jeong Mee Park
Plant Biotechnology Reports.2018; 12(6): 409. CrossRef
Isolation and identification of endophytic diazotrophs from lodgepole pine trees growing at unreclaimed gravel mining pits in central interior British Columbia, Canada
Kiran Preet Padda, Akshit Puri, Chris P. Chanway
Canadian Journal of Forest Research.2018; 48(12): 1601. CrossRef
Bacterial endophytes isolated from mountain-cultivated ginseng (Panax ginseng Mayer) have biocontrol potential against ginseng pathogens
MD. Emran Khan Chowdhury, Hanhong Bae
Biological Control.2018; 126: 97. CrossRef
Isolation and identification of bacterial endophytes from Crinum macowanii Baker
F. Morare Rebotiloe, Ubomba-Jaswa Eunice, H. Serepa-Dlamini Mahloro
African Journal of Biotechnology.2018; 17(33): 1040. CrossRef
Diversity of bacterial endophytes in Panax ginseng and their protective effects against pathogens
Chi Eun Hong, Jang Uk Kim, Jung Woo Lee, Sung Woo Lee, Ick-Hyun Jo
3 Biotech.2018;[Epub] CrossRef
Analysis of Medium-Chain-Length Polyhydroxyalkanoate-Producing Bacteria in Activated Sludge Samples Enriched by Aerobic Periodic Feeding
Sun Hee Lee, Jae Hee Kim, Chung-Wook Chung, Do Young Kim, Young Ha Rhee
Microbial Ecology.2018; 75(3): 720. CrossRef
Extensive Overlap of Tropical Rainforest Bacterial Endophytes between Soil, Plant Parts, and Plant Species
Emmanuel Haruna, Noraziah M. Zin, Dorsaf Kerfahi, Jonathan M. Adams
Microbial Ecology.2018; 75(1): 88. CrossRef
Diversity of commensal bacteria from mid-gut of pink stem borer (Sesamia inferens [Walker])-Lepidoptera insect populations of India
B. Motcha Anthony Reetha, M. Mohan
Journal of Asia-Pacific Entomology.2018; 21(3): 937. CrossRef
The seed endosphere of Anadenanthera colubrina is inhabited by a complex microbiota, including Methylobacteriumspp. and Staphylococcus spp. with potential plant-growth promoting activities
Pasquale Alibrandi, Massimiliano Cardinale, MD Mahafizur Rahman, Francesco Strati, Paolo Ciná, Marta L. de Viana, Eugenia M. Giamminola, Giuseppe Gallo, Sylvia Schnell, Carlotta De Filippo, Mirella Ciaccio, Anna Maria Puglia
Plant and Soil.2018; 422(1-2): 81. CrossRef
Corn sap bacterial endophytes and their potential in plant growth-promotion
Shimaila Ali, Joshua Isaacson, Yulia Kroner, Soledad Saldias, Saveetha Kandasamy, George Lazarovits
Environmental Sustainability.2018; 1(4): 341. CrossRef
Diversity and composition of rhizospheric soil and root endogenous bacteria in Panax notoginseng during continuous cropping practices
Yong Tan, Yinshan Cui, Haoyu Li, Anxiu Kuang, Xiaoran Li, Yunlin Wei, Xiuling JI
Journal of Basic Microbiology.2017; 57(4): 337. CrossRef
Revealing topics and their evolution in biomedical literature using Bio-DTM: a case study of ginseng
Qian Chen, Ni Ai, Jie Liao, Xin Shao, Yufeng Liu, Xiaohui Fan
Chinese Medicine.2017;[Epub] CrossRef
Effects of two new siderophore-producing rhizobacteria on growth and iron content of maize and canola plants
Nazanin Ghavami, Hossein Ali Alikhani, Ahmad Ali Pourbabaei, Hossein Besharati
Journal of Plant Nutrition.2017; 40(5): 736. CrossRef
Prevalence of Bacillus in the interior tissues of Monsonia burkeana and other medicinal plants in South Africa
L.R. Nnzeru, K. Ntushelo, F.N. Mudau
South African Journal of Botany.2017; 113: 19. CrossRef
Molecular Basis of Endophytic Bacillus megaterium-induced Growth Promotion in Arabidopsis thaliana: Revelation by Microarray-based Gene Expression Analysis
Munjal Vibhuti, A. Kumar, Neelam Sheoran, Agisha Valiya Nadakkakath, Santhosh J. Eapen
Journal of Plant Growth Regulation.2017; 36(1): 118. CrossRef
Plant growth-promoting activities for bacterial and fungal endophytes isolated from medicinal plant of Teucrium polium L.
Saad El-Din Hassan
Journal of Advanced Research.2017; 8(6): 687. CrossRef
Composition, diversity and bioactivity of culturable bacterial endophytes in mountain-cultivated ginseng in Korea
MD. Emran Khan Chowdhury, Junhyun Jeon, Soon Ok Rim, Young-Hwan Park, Seung Kyu Lee, Hanhong Bae
Scientific Reports.2017;[Epub] CrossRef
Endophytes of Jatropha curcas promote growth of maize
Santosh Ranjan Mohanty, Garima Dubey, Bharati Kollah
Rhizosphere.2017; 3: 20. CrossRef
Diversity of bacterial endophytes in 3 and 15 year-old grapevines of Vitis vinifera cv. Corvina and their potential for plant growth promotion and phytopathogen control
Marco Andreolli, Silvia Lampis, Giacomo Zapparoli, Elisa Angelini, Giovanni Vallini
Microbiological Research.2016; 183: 42. CrossRef
Genotyping and identification of broad spectrum antimicrobial volatiles in black pepper root endophytic biocontrol agent, Bacillus megaterium BP17
Vibhuti Munjal, Agisha Valiya Nadakkakath, Neelam Sheoran, Aditi Kundu, Vibina Venugopal, Kesavan Subaharan, Suseelabhai Rajamma, Santhosh J. Eapen, Aundy Kumar
Biological Control.2016; 92: 66. CrossRef
Endophytic culturable bacteria colonizing Lavandula dentata L. plants: Isolation, characterization and evaluation of their plant growth-promoting activities
S.I.A. Pereira, C. Monteiro, A.L. Vega, P.M.L. Castro
Ecological Engineering.2016; 87: 91. CrossRef
Endophytic microorganisms from Bauhinia monandra leaves: Isolation, antimicrobial activities and interaction with galactose-specific lectin BmoLL
A F Ramos S, C N Silva L, T S Correia M, M Ara uacute jo J, C B B Coelho L
African Journal of Microbiology Research.2016; 10(17): 600. CrossRef
Enhanced biological phosphorus removal in aerated stirred tank reactor using aerobic bacterial consortium
Dharmender Yadav, Vikas Pruthi, Pramod Kumar
Journal of Water Process Engineering.2016; 13: 61. CrossRef
Biological Control Activities of Rice-Associated Bacillus sp. Strains against Sheath Blight and Bacterial Panicle Blight of Rice
Bishnu K. Shrestha, Hari Sharan Karki, Donald E. Groth, Nootjarin Jungkhun, Jong Hyun Ham, Adam Driks
PLOS ONE.2016; 11(1): e0146764. CrossRef
Genomic investigation reveals evolution and lifestyle adaptation of endophytic Staphylococcus epidermidis
Vasvi Chaudhry, Prabhu B. Patil
Scientific Reports.2016;[Epub] CrossRef
The diversity and potential function of endophytic bacteria isolated from Kobreasia capillifolia at alpine grasslands on the Tibetan Plateau, China
Ying WANG, Cheng-de YANG, Yu-ling YAO, Yu-qin WANG, Zhen-fen ZHANG, Li XUE
Journal of Integrative Agriculture.2016; 15(9): 2153. CrossRef
Influences of Plant Species, Season and Location on Leaf Endophytic Bacterial Communities of Non-Cultivated Plants
Tao Ding, Ulrich Melcher, Lorenzo Brusetti
PLOS ONE.2016; 11(3): e0150895. CrossRef
An endophytic bacterium isolated from Panax ginseng C.A. Meyer enhances growth, reduces morbidity, and stimulates ginsenoside biosynthesis
Yugang Gao, Qun Liu, Pu Zang, Xue Li, Qing Ji, Zhongmei He, Yan Zhao, He Yang, Xueliang Zhao, Lianxue Zhang
Phytochemistry Letters.2015; 11: 132. CrossRef
Determination of ginsenosides by Bacillus polymyxa conversion and evaluation on pharmacological activities of the conversion products
Qing Ji, Yugang Gao, Yan Zhao, Zhongmei He, Pu Zang, Hongyan Zhu, He Yang, Xue Li, Lianxue Zhang
Process Biochemistry.2015; 50(6): 1016. CrossRef
Involvement of soil bacteria in ABO blood mistyping
Naoki Takada, Chikahiro Mori, Rie Takai, Tomohiro Takayama, Yoshihisa Watanabe, Kohei Nakamura, Kazuhiro Takamizawa
Legal Medicine.2015; 17(2): 128. CrossRef
Impact of plant development on the rhizobacterial population of Arachis hypogaea: a multifactorial analysis
Shyamalina Haldar, Sanghamitra Sengupta
Journal of Basic Microbiology.2015; 55(7): 922. CrossRef
Biosynthesis of Anisotropic Silver Nanoparticles by Bhargavaea indica and Their Synergistic Effect with Antibiotics against Pathogenic Microorganisms
Priyanka Singh, Yeon Ju Kim, Hina Singh, Ramya Mathiyalagan, Chao Wang, Deok Chun Yang, An-Ya Lo
Journal of Nanomaterials.2015;[Epub] CrossRef
Bacterial community compositions of tomato (Lycopersicum esculentum Mill.) seeds and plant growth promoting activity of ACC deaminase producing Bacillus subtilis (HYT-12-1) on tomato seedlings
Mingshuang Xu, Jiping Sheng, Lin Chen, Yejun Men, Lin Gan, Shuntang Guo, Lin Shen
World Journal of Microbiology and Biotechnology.2014; 30(3): 835. CrossRef
The phosphotransferase system geneptsIin the endophytic bacteriumBacillus cereusis required for biofilm formation, colonization, and biocontrol against wheat sharp eyespot
Yu-Bin Xu, Mai Chen, Ying Zhang, Miao Wang, Ying Wang, Qiu-bin Huang, Xue Wang, Gang Wang
FEMS Microbiology Letters.2014; 354(2): 142. CrossRef
Dynamics of Panax ginseng Rhizospheric Soil Microbial Community and Their Metabolic Function
Yong Li, YiXin Ying, WanLong Ding, Shilin Chen
Evidence-Based Complementary and Alternative Medicine.2014;[Epub] CrossRef
Quorum-Sensing Regulation of Constitutive Plantaricin by Lactobacillus plantarum Strains under a Model System for Vegetables and Fruits
Carlo G. Rizzello, Pasquale Filannino, Raffaella Di Cagno, Maria Calasso, Marco Gobbetti
Applied and Environmental Microbiology.2014; 80(2): 777. CrossRef
Population and Diversity of Endophytic Bacteria Associated with Medicinal Plant Curcuma zedoaria
TRI RATNA SULISTIYANI, PUSPITA LISDIYANTI, YULIN LESTARI
Microbiology Indonesia.2014; 8(2): 65. CrossRef
Endophytic microorganisms—promising applications in bioremediation of greenhouse gases
Z. Stępniewska, A. Kuźniar
Applied Microbiology and Biotechnology.2013; 97(22): 9589. CrossRef
Phylogenetic diversity of bacterial endophytes of Panax notoginseng with antagonistic characteristics towards pathogens of root-rot disease complex
Li Ma, Yong Hong Cao, Ming Hui Cheng, Ying Huang, Ming He Mo, Yong Wang, Jian Zhong Yang, Fa Xiang Yang
Antonie van Leeuwenhoek.2013; 103(2): 299. CrossRef
Distribution of Endophytic Bacteria in Alopecurus aequalis Sobol and Oxalis corniculata L. from Soils Contaminated by Polycyclic Aromatic Hydrocarbons
Anping Peng, Juan Liu, Yanzheng Gao, Zeyou Chen, Raffaella Balestrini
PLoS ONE.2013; 8(12): e83054. CrossRef
Endophytic bacterial diversity in banana 'Prata Anã' (Musa spp.) roots
Suzane A. Souza, Adelica A. Xavier, Márcia R. Costa, Acleide M.S. Cardoso, Marlon C.T. Pereira, Silvia Nietsche
Genetics and Molecular Biology.2013; 36(2): 252. CrossRef
Antitumor activity of bacterial exopolysaccharides from the endophyte Bacillus amyloliquefaciens sp. isolated from Ophiopogon japonicus
YI-TAO CHEN, QIANG YUAN, LE-TIAN SHAN, MEI-AI LIN, DONG-QING CHENG, CHANG-YU LI
Oncology Letters.2013; 5(6): 1787. CrossRef
Nitrogen‐fixing bacteria with multiple plant growth‐promoting activities enhance growth of tomato and red pepper
Md. Rashedul Islam, Tahera Sultana, M. Melvin Joe, Woojong Yim, Jang‐Cheon Cho, Tongmin Sa
Journal of Basic Microbiology.2013; 53(12): 1004. CrossRef
Diversity and physiological properties of root endophytic actinobacteria in native herbaceous plants of Korea
Tae-Ui Kim, Sung-Heun Cho, Ji-Hye Han, Young Min Shin, Hyang Burm Lee, Seung Bum Kim
The Journal of Microbiology.2012; 50(1): 50. CrossRef
Study of the anti-sapstain fungus activity of Bacillus amyloliquefaciens CGMCC 5569 associated with Ginkgo biloba and identification of its active components
Bo Yuan, Zhe Wang, Sheng Qin, Gui-Hua Zhao, You-Jian Feng, Li-Hui Wei, Ji-Hong Jiang
Bioresource Technology.2012; 114: 536. CrossRef
Molecular Diversity of Rhizobacteria in Ginseng Soil and Their Plant Benefiting Attributes
Eun Hye Hong, Sun Hee Lee, Regupathy Thamizh Vendan, Young Ha Rhee
The Korean Journal of Microbiology.2012; 48(4): 246. CrossRef
Biosynthesis of Copolyesters Consisting of 3-Hydroxyvalerate and Medium-chain-length 3-hydroxyalkanoates by the Pseudomonas aeruginosa P-5 Strain
Sang-Hee Woo, Jae-Hee Kim, Yu-Yang Ni, Young-Ha Rhee
The Korean Journal of Microbiology.2012; 48(3): 200. CrossRef

Application of Terminal Restriction Fragment Length Polymorphism (T-RFLP) Analysis to Monitor Effect of Biocontrol Agents on Rhizosphere Microbial Community of Hot Pepper (Capsicum annuum L.): Young Tae Kim , Myoungho Cho , Je Yong Jeong , Hyang Burm Lee , Seung Bum Kim; J. Microbiol. 2010;48(5):566-572. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0126-6

51 View
0 Download
11 Scopus

Abstract: Microbial communities in hot pepper (Capsicum annuum L.) cultivation fields under different cultivation methods were investigated by terminal restriction fragment length polymorphism (T-RFLP) analysis. Rhizosphere soil and leaf samples were collected from control, conventional and nature-friendly cultivation fields between May and July, 2009. Two Bacillus subtilis strains were applied to nature-friendly cultivation fields as biocontrol agents during the sampling period. Relative abundances of bacteria and plant pathogenic fungi related T-RFs were also measured to monitor the effect of biocontrol agents on potential plant pathogenic fungi. In the principal component analysis (PCA) based on T-RFLP profiles, the microbial communities from rhizosphere soil samples in July, including bacteria and fungi, showed distinct difference between nature-friendly cultivation fields and other cultivation fields. However, there was no correlation between cultivation methods and leaf microbial communities at any sampling period. Changes in the abundance of bacteria related T-RF in the rhizosphere of nature-friendly cultivation fields were observed clearly two months after application of biocontrol agent, while the abundance of plant pathogenic fungi related T-RFs significantly decreased.

Bacterial Diversity in the Sediment from Polymetallic Nodule Fields of the Clarion-Clipperton Fracture Zone: Chun-Sheng Wang , Li Liao , Hong-Xiang Xu , Xue-Wei Xu , Min Wu , Li-Zhong Zhu; J. Microbiol. 2010;48(5):573-585. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0151-5

56 View
0 Download
22 Scopus

Abstract: The Clarion-Clipperton Fracture Zone (CCFZ) is located in the northeastern equatorial Pacific and contains abundant polymetallic nodules. To investigate its bacterial diversity, four libraries of 16S rRNA genes were constructed from sediments of four stations in different areas of the CCFZ. In total, 313 clones sequenced from the 4 libraries were assigned into 14 phylogenetic groups and 1 group of 28 unclassified bacteria. High bacterial diversity was predicted by the rarefaction analysis. The most dominant group overall was Proteobacteria, but there was variation in each library: Gammaproteobacteria was the most dominant group in two libraries, E2005-01 and ES0502, while Alphaproteobacteria and Deltaproteobacteria were the most dominant groups in libraries EP2005-03 and WS0505, respectively. Seven groups, including Alphaproteobacteria, Gammaproteobacteria, Deltaproteobacteria, Betaproteobacteria, Acidobacteria, Actinobacteria, and Bacteroidetes, were common to all four libraries. The remaining minor groups were distributed in libraries with different patterns. Most clones sequenced in this study were clustered with uncultured bacteria obtained from the environment, such as the ocean crust and marine sediment, but only distantly related to isolates. Bacteria involved in the cycling of metals, sulfur and nitrogen were detected, and their relationship with their habitat was discussed. This study sheds light on the bacterial communities associated with polymetallic nodules in the CCFZ and provides primary data on the bacterial diversity of this area.

Evaluation of the Sensitivity and Specificity of Primer Pairs and the Efficiency of RNA Extraction Procedures to Improve Noroviral Detection from Oysters by Nested Reverse Transcription-Polymerase Chain Reaction: Cheonghoon Lee , Sooryun Cheong , Hee-Jung Lee , Miye Kwon , Ilnam Kang , Eun-Gyoung Oh , Hong-Sik Yu , Soon-Bum Shin , Sang-Jong Kim; J. Microbiol. 2010;48(5):586-593. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0047-4

50 View
0 Download
6 Scopus

Abstract: Noroviruses (NoV) are the key cause of acute epidemic gastroenteritis, and oysters harvested from NoVpolluted sea areas are considered as the significant vectors of viral transmission. To improve NoV detection from oyster using nested reverse transcription-polymerase chain reaction (RT-PCR), we evaluated the sensitivity and specificity of previously published primer pairs and the efficiency of different RNA extraction procedures. Among the primer pairs used for RT-PCR, the sensitivity of GIF1/GIR1-GIF2/GIR1 and GIIF1/GIIR1-GIIF2/GIIR1 was higher than that of other primer pairs used in nested RT-PCR for the detection of NoV genogroup I (NoV GI) and NoV GII from both NoV-positive stool suspension and NoVseeded oyster concentrates, respectively; the resulting products showed neither unspecific bands in the positive samples nor false-positive bands in the negative controls. The extraction of NoV RNA from oyster samples using a QIAamp? Viral RNA Mini kit with a QIAshredderTM Homogenizer pretreatment afforded more efficient recovery (mean recovery for NoV GI and GII, 6.4%) and the procedure was less time consuming (<30 min) than most other RNA extraction procedures. The results of RNA extraction procedure and primer pairs evaluated by nested RT-PCR assay in this study can be useful for monitoring NoV contamination in oysters, which is an indicator of possible public health risks.

Effects of Crude Oil on Marine Microbial Communities in Short Term Outdoor Microcosms: Seung Won Jung , Joon Sang Park , Oh Youn Kown , Jung-Hoon Kang , Won Joon Shim , Young-Ok Kim; J. Microbiol. 2010;48(5):594-600. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0199-2

50 View
0 Download
43 Scopus

Abstract: To assess the effects of crude oil spills on marine microbial communities, 10 L outdoor microcosms were manipulated over an exposure period of 8 days. The responses of microbial organisms exposed to five crude oil concentrations in 10 to 10,000 ppm (v/v) were monitored in the microcosms. The abundance of microalgae and copepods decreased rapidly upon the addition of crude oil at concentrations over 1,000 ppm, whereas the total density of heterotrophic bacteria increased dramatically at the higher concentrations. Bacterial diversity, determined by denaturing gradient gel electrophoresis, was increased at higher concentrations. In particular, the intensity of the bands representing Jannaschia sp. and Sulfitobacter brevis increased with the addition of oil. These results indicate that crude oil spills with concentrations over 1,000 ppm seriously affected the structure of the microbial communities.

Pseudoxanthomonas icgebensis sp. nov., Isolated from the Midgut of Anopheles stephensi Field-Collected Larvae§: Asha Rani , Anil Sharma , Tridibes Adak , Raj K. Bhatnagar; J. Microbiol. 2010;48(5):601-606. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0125-7

52 View
0 Download
4 Scopus

Abstract: A Gram-negative, aerobic, golden yellow, rod-shaped bacterium, a strain designated ICGEB-L15T, was isolated from the larval midgut of Anopheles stephensi captured in District Jhajjar, Haryana, India. The strain ICGEB-L15T grows at 30-50°C (optimum 30-37°C), pH 6.5-8.5 (optimum 7.0-8.0) and in the presence of 2% NaCl. The major fatty acids were iso-C15:0 (22.5% of total fatty acid), anteiso-C15:0 (16.5%), iso-C17:1ω9c (10.3%), iso-C16:0 (7.3%), C16:0 (6.1%), and iso-C11:0 (5.3%). The strain showed the highest 16S rRNA gene sequence similarities with the type strains Pseudoxanthomonas daejeonensis KCTC 12207T (97.4%), Pseudoxanthomonas kaohsiungensis J36T (97.17%), and Pseudoxanthomonas mexicana AMX 26BT (97.11%). The DNA relatedness between ICGEB-L15T and Pseudoxanthomonas daejeonensis KCTC 12207T, Pseudoxanthomonas kaohsiungensis J36T and Pseudoxanthomonas mexicana AMX 26BT was 24.5%, 28.2%, and 33.6%, respectively. The G+C content of genomic DNA was 69.9 mol%. The major isoprenoid quinone of strain ICGEB-L15T was Q-8. The strain ICGEB-L15T represents a novel species of the genus Pseudoxanthomonas based on physiological, biochemical and phylogenetic properties; therefore, the name Pseudoxanthomonas icgebensis sp. nov. is proposed. The type strain is ICGEB-L15T (=KACC 14090T =DSM 22536T).

Journal Article

Re-identification of Aspergillus fumigatus sensu lato Based on a New Concept of Species Delimitation: Seung-Beom Hong , Dae-Ho Kim , In-Cheol Park , Young-Joon Choi , Hyeon-Dong Shin , Robert Samson; J. Microbiol. 2010;48(5):607-615. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0084-z

51 View
0 Download
16 Scopus

Abstract: The species concept of Aspergillus fumigatus sensu stricto has recently been defined by polyphasic taxonomy. Based on the new concept of species delimitations, 146 worldwide strains of Aspergillus fumigatus sensu lato were re-identified. Of those 146 strains, 140 (95.8%) could be identified as A. fumigatus sensu stricto, 3 (2.1%) as A. lentulus, and the remaining 3 strains as A. viridinutans complex, Neosartorya udagawae, and N. cf. nishimurae. Of 98 clinical strains, only 1 from dolphin nostril was identified as A. lentulus and not A. fumigatus sensu stricto. Random amplification of polymorphic DNA-polymerase chain reaction (RAPD-PCR) with primers PELF and URP1F produced nearly the same band patterns among 136 strains of A. fumigatus sensu stricto while discriminated the species from its related species. We also discussed about identification of several atypical A. fumigatus strains from clinical environments.

Research Support, Non-U.S. Gov'ts

New Taxa in Alphaproteobacteria: Brevundimonas olei sp. nov., an Esterase-Producing Bacterium: Myungjin Lee , Sathiyaraj Srinivasan , Myung Kyum Kim; J. Microbiol. 2010;48(5):616-622. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-9367-7

53 View
0 Download
7 Crossref

Abstract

A polyphasic taxonomic approach was used to characterize a Gram-negative, non-motile bacterium, designated MJ15T, that was isolated from soil of a GS-Caltex Oil reservoir in Korea. As shown by comparative 16S rRNA gene sequence analysis, strain MJ15T belongs to genus Brevundimonas. The 16S rRNA gene sequence similarities ranged from 95.6-99.2% between strain MJ15T and validated representatives of the genus Brevundimonas. With respect to Brevundimonas species, strain MJ15T exhibited DNA-DNA relatedness values below 40.7%. The G+C content of the genomic DNA was 61.7 mol%. Strain MJ15T contained ubiquinone Q-10. The major fatty acids were C16:0 (27.7%), C19:0 cyclo ω8c (23.2%), summed feature 8 (containing C18:1 ω7c/C18:1 ω6c) (28.5%), and major hydroxyl fatty acid was C12:0 3OH (3.7%). Based upon its phenotypic and genotypic properties, as well as its phylogenetic distinctiveness, strain MJ15T (KCTC 22461T; JCM 16237T) should be classified in the genus Brevundimonas as the type strain of a novel species. The name Brevundimonas olei sp. nov. is proposed for this new species.

Citations

Citations to this article as recorded by

Brevundimonas brasiliensis sp. nov.: a New Multidrug-Resistant Species Isolated from a Patient in Brazil
Gabriela Guerrera Soares, Emeline Boni Campanini, Roumayne Lopes Ferreira, Marcelo Silva Folhas Damas, Saulo Henrique Rodrigues, Leslie Camelo Campos, Jucimária Dantas Galvão, Andrea Soares da Costa Fuentes, Caio César de Melo Freire, Iran Malavazi, André
Microbiology Spectrum.2023;[Epub] CrossRef
Dysbiosis by Eradication of Helicobacter pylori Infection Associated with Follicular Gastropathy and Pangastropathy
Uriel Gomez-Ramirez, Carolina G. Nolasco-Romero, Araceli Contreras-Rodríguez, Gerardo Zuñiga, Sandra Mendoza-Elizalde, Francisco-Javier Prado-Galbarro, Fernando Pérez Aguilar, Jonatan Elihu Pedraza Tinoco, Pedro Valencia-Mayoral, Norma Velázquez-Guadarram
Microorganisms.2023; 11(11): 2748. CrossRef
Genome-Based Taxonomy of Brevundimonas with Reporting Brevundimonas huaxiensis sp. nov.
Lina Liu, Yu Feng, Li Wei, Zhiyong Zong, Jasna Kovac
Microbiology Spectrum.2021;[Epub] CrossRef
Oil Bioremediation in a Tropical Contaminated Soil Using a Reactor
CATALINA TREJOS-DELGADO, GLORIA E. CADAVID-RESTREPO, ANGELINA HORMAZA-ANAGUANO, EDISON A. AGUDELO, LEONARDO BARRIOS-ZIOLO, JUAN CARLOS LOAIZA-USUGA, SANTIAGO A. CARDONA-GALLO
Anais da Academia Brasileira de Ciências.2020;[Epub] CrossRef
Facilitated bio-mineralization of N,N-dimethylformamide in anoxic denitrification system: Long-term performance and biological mechanism
Jing Wang, Xiaolin Liu, Xinbai Jiang, Libin Zhang, Cheng Hou, Guanyong Su, Lianjun Wang, Yang Mu, Jinyou Shen
Water Research.2020; 186: 116306. CrossRef
Molecular Identification and Evaluation of Indigenous Bacterial Isolates for Their Plant Growth Promoting and Biological Control Activities against Fusarium Wilt Pathogen of Tomato
Amanul Islam, Md. Shahinur Kabir, Abul Khair
The Plant Pathology Journal.2019; 35(2): 137. CrossRef
Bacterial Community Structure of Autotrophic Denitrification Biocathode by 454 Pyrosequencing of the 16S rRNA Gene
Yong Xiao, Yue Zheng, Song Wu, Zhao-Hui Yang, Feng Zhao
Microbial Ecology.2015; 69(3): 492. CrossRef

Nocardioides ginsengisegetis sp. nov., Isolated from Soil of a Ginseng Field: Wan-Taek Im , Se-Young Kim , Qing-Mei Liu , Jung-Eun Yang , Sung-Taik Lee , Tae-Hoo Yi; J. Microbiol. 2010;48(5):623-628. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0001-5

50 View
0 Download
31 Scopus

Abstract: A Gram-positive, rod-shaped, non-spore-forming bacterium (Gsoil 485T) was isolated from the soil of a ginseng field located in Pocheon province in South Korea. This bacterium was characterized in order to determine its taxonomic position by using the polyphasic approach. On the basis of 16S rRNA gene sequence similarity, strain Gsoil 485T was shown to belong to the family Nocardioidaceae and related to Nocardioides koreensis (96.8% 16S rRNA gene sequence similarity), Nocardioides basaltis (96.7%), Nocardioides salarius (96.7%), and Nocardioides sediminis (96.5%). The sequence similarity with other species that had validly published names within the genus Nocardioides was less than 96.4%. Strain Gsoil 485T was characterized chemotaxonomically as having LL-2,6-diaminopimelic acid in a cell-wall peptidoglycan, MK-8(H4) as the predominant menaquinone, and iso-C16:0, C18:1 ω9c as the major fatty acids. The G+C content of genomic DNA was 71.6 mol%. The chemotaxonomic properties and phenotypic characteristics supported the affiliation of strain Gsoil 485T to the genus Nocardioides. The results of both physiological and biochemical tests allowed for genotypic differentiation of strain Gsoil 485T from the recognized Nocardioides species. Therefore, strain Gsoil 485T is considered to represent the novel species, for which the name Nocardioides ginsengisegetis sp. nov. is proposed, with the type strain Gsoil 485T (KACC 14269T =KCTC 19469T =DSM 21349T).

Characterization of Escherichia coli EutD: a Phosphotransacetylase of the Ethanolamine Operon: Federico P. Bologna , Valeria A. Campos-Bermudez , Damián D. Saavedra , Carlos S. Andreo , María F. Drincovich; J. Microbiol. 2010;48(5):629-636. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0091-0

47 View
0 Download
14 Scopus

Abstract: The Escherichia coli genes pta and eutD encode proteins containing the phosphate-acetyltransferase domain. EutD is composed only by this domain and belongs to the ethanolamine operon. This enzyme has not been characterized yet, and its relationship to the multimodular E. coli phosphotransacetylase (Pta) remains unclear. In the present work, a detailed characterization of EutD from E. coli (EcEutD) was performed. The enzyme is a more efficient phosphotransacetylase than E. coli Pta (EcPta) in catalyzing its reaction in either direction and assembles as a dimer, being differentially modulated by EcPta effectors. When comparing EutD and Pta, both from E. coli, certain divergent regions of the primary structure responsible for their unique properties can be found. The growth on acetate of the E. coli pta acs double-mutant strain, was complemented by either introducing EcEutD or by inducing the eut operon with ethanolamine. In this case, the expression of a phosphotransacetylase different from Pta was confirmed by activity assays. Overall, the results indicate that EcEutD and Pta, although able to catalyse the same reaction, display differential efficiency and regulation, and also differ in the induction of their expression. However, under certain growth conditions, they can fulfil equal roles in E. coli metabolism.

Characterization of Deinococcus radiophilus Thioredoxin Reductase Active with Both NADH and NADPH: Hee-Jeong Seo , Young Nam Lee; J. Microbiol. 2010;48(5):637-643. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0283-7

52 View
0 Download
4 Scopus

Abstract: Thioredoxin reductase (TrxR, EC 1.6.4.5) of Deinococcus radiophilus was purified by steps of sonication, ammonium sulfate fractionation, 2'5' ADP Sepharose 4B affinity chromatography, and Sephadex G-100 gel filtration. The purified TrxR, which was active with both NADPH and NADH, gave a 368 U/mg protein of specific activity with 478-fold purification and 18% recovery from the cell-free extract. An isoelectric point of the purified enzymes was ca. 4.5. The molecular weights of the purified TrxR estimated by PAGE and gel filtration were about 63.1 and 72.2 kDa, respectively. The molecular mass of a TrxR subunit is 37 kDa. This suggests that TrxR definitely belongs to low molecular weight TrxR (L-TrxR). The Km and Vmax of TrxR for NADPH are 12.5 μM and 25 μM/min, whereas those for NADH are 30.2 μM and 192 μ M/min. The Km and Vmax for 5, 5'-dithio-bis-2-nitrobenzoic acid (DTNB, a substituted substrate for thioredoxin) are 463 μM and 756 μM/min, respectively. The presence of FAD in TrxR was confirmed with the absorbance peaks at 385 and 460 nm. The purified TrxR was quite stable from pH 3 to 9, and was thermo-stable up to 70°C. TrxR activity was drastically reduced (ca. 70%) by Cu2+, Zn2+, Hg2+, and Cd2+, but moderately reduced (ca. 50%) by Ag+. A significant inhibition of TrxR by N ethylmaleimide suggests an occurrence of cysteine at its active sites. Amino acid sequences at the N-terminus of purified TrxR are H2N-Ser-Glu-Gln-Ala-Gln-Met-Tyr-Asp-Val-Ile-Ile-Val-Gly-Gly-Gly-Pro-Ala-Gly-Leu-Thr-Ala-COOH. These sequences show high similarity with TrxRs reported in Archaea, such as Methanosarcina mazei, Archaeoglobus fulgidus etc.

Identification of Vibrio natriegens uvrA and uvrB Genes and Analysis of Gene Regulation Using Transcriptional Reporter Plasmids: Keryn L. Simons , Susan M. Thomas , Peter A. Anderson; J. Microbiol. 2010;48(5):644-656. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-9370-z

51 View
0 Download
6 Scopus

Abstract: Nucleotide excision repair (NER) rectifies a variety of chemically and structurally distinct DNA lesions. The current model of NER is based upon the enteric bacterium Escherichia coli and there is scarce information about how other bacterial species respond to, and correct, DNA damage. Here we report the isolation and functional analysis of the uvrA and uvrB genes from Vibrio natriegens, a naturally occurring marine bacterium. Genetic studies were completed to assess the repair capabilities of V. natriegens uvrA and uvrB in E. coli uvrA and uvrB mutants. In addition to the genetic studies, transcriptional fusions between the luciferase gene and the 5′ regulatory regions of uvrA and uvrB gene of V. natriegens and E. coli were constructed. Luminescent measurements from E. coli transformed with these constructs showed that whilst the response to UV irradiation of either E. coli or V. natriegens uvrA regulatory sequences was similar, both the rate and induction of luminescence detected from the uvrB regulatory regions differed.

Replication and Pathogenesis of the Pandemic (H1N1) 2009 Influenza Virus in Mammalian Models: Donghyok Kwon , Kyeongcheol Shin , Seungtae Kim , Yooncheol Ha , Jang-Hoon Choi , Jeong Seon Yang , Joo-Yeon Lee , Chanhee Chae , Hee-Bok Oh , Chun Kang; J. Microbiol. 2010;48(5):657-662. Published online November 3, 2010; DOI: https://doi.org/10.1007/s12275-010-0120-z

46 View
0 Download
19 Scopus

Abstract: This study aimed to characterize the replication and pathogenic properties of a Korean pandemic (H1N1) 2009 influenza virus isolate in ferrets and mice. Ferrets infected with A/Korea/01/2009 (H1N1) virus showed mild clinical signs. The virus replicated well in lungs and slightly in brains with no replication in any other organs. Severe bronchopneumonia and thickening of alveolar walls were detected in the lungs. Viral antigens were detected in the bronchiolar epithelial cells, in peribronchial glands with severe peribronchitis and in cells present in the alveoli. A/Korea/01/2009 (H1N1) virus-infected mice showed weight loss and pathological lung lesions including perivascular cuffing, interstitial pneumonia and alveolitis. The virus replicated highly in the lungs and slightly in the nasal tissues. Viral antigens were detected in bronchiolar epithelial cells, pneumocytes and interstitial macrophages. However, seasonal H1N1 influenza virus did not replicate in the lungs of ferrets, and viral antigens were not detected. Thus, this Korean pandemic (H1N1) 2009 isolate infected the lungs of ferrets and mice successfully and caused more pathological lesions than did the seasonal influenza virus.

First
Prev
Page of 2
Next
Last

Previous issues