- Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
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Young Joon Oh , Joon Yong Kim , Seul Ki Lim , Min-Sung Kwon , Hak-Jong Choi
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J. Microbiol. 2021;59(5):460-466. Published online April 28, 2021
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DOI: https://doi.org/10.1007/s12275-021-0513-1
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 Abstract
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To date, all species in the genus Salicibibacter have been isolated
in Korean commercial kimchi. We aimed to describe
the taxonomic characteristics of two strains, NKC5-3T and
NKC21-4T, isolated from commercial kimchi collected from
various regions in the Republic of Korea. Cells of these strains
were rod-shaped, Gram-positive, aerobic, oxidase- and catalase-
positive, non-motile, halophilic, and alkalitolerant. Both
strains, unlike other species of the genus Salicibibacter, could
not grow without NaCl. Strains NKC5-3T and NKC21-4T
could tolerate up to 25.0% (w/v) NaCl (optimum 10%) and
grow at pH 7.0–10.0 (optimum 8.5) and 8.0–9.0 (optimum
8.5), respectively; they showed 97.1% 16S rRNA gene sequence
similarity to each other and were most closely related
to S. kimchii NKC1-1T (97.0% and 96.8% similarity, respectively).
The genome of strain NKC5-3T was nearly 4.6 Mb in
size, with 4,456 protein-coding sequences (CDSs), whereas
NKC21-4T genome was nearly 3.9 Mb in size, with 3,717 CDSs.
OrthoANI values between the novel strains and S. kimchii
NKC1-1T were far lower than the species demarcation threshold.
NKC5-3T and NKC21-4T clustered together to form
branches that were distinct from the other Salicibibacter species.
The major fatty acids in these strains were anteiso-C15:0
and anteiso-C17:0, and the predominant menaquinone was
menaquinone-7. The polar lipids of NKC5-3T included diphosphatidylglycerol
(DPG), phosphatidylglycerol (PG), and
five unidentified phospholipids (PL), and those of NKC21-4T
included DPG, PG, seven unidentified PLs, and an unidentified
lipid. Both isolates had DPG, which is the first case in
the genus Salicibibacter. The genomic G + C content of strains
NKC5-3T and NKC21-4T was 44.7 and 44.9 mol%, respectively.
Based on phenotypic, genomic, phylogenetic, and chemotaxonomic
analyses, strains NKC5-3T (= KACC 22040T
= DSM 111417T) and NKC21-4T (= KACC 22041T = DSM
111418T) represent two novel species of the genus Salicibibacter,
for which the names Salicibibacter cibarius sp. nov.
and Salicibibacter cibi sp. nov. are proposed.
-
Citations
Citations to this article as recorded by  - Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef
- Lentibacillus cibarius sp. nov., isolated from kimchi, a Korean fermented food
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Young Joon Oh , Joon Yong Kim , Hee Eun Jo , Hyo Kyeong Park , Seul Ki Lim , Min-Sung Kwon , Hak-Jong Choi
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J. Microbiol. 2020;58(5):387-394. Published online April 11, 2020
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DOI: https://doi.org/10.1007/s12275-020-9507-7
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Abstract
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Two bacterial strains designated NKC220-2T and NKC851-2
were isolated from commercial kimchi from different areas
in Korea. The strains were Gram-positive, aerobic, oxidaseand
catalase-positive, rod-shaped, spore-forming, non-motile,
and halophilic bacteria. Both strains grew without NaCl,
unlike type species in the genus Lentibacillus. The optimal
pH for growth was 8.0, higher than that of the type species
in the genus Lentibacillus, although growth was observed at
pH 5.5–9.0. 16S rRNA gene sequence-based phylogenetic analysis
indicated that the two strains (99.3–99.9% similarity)
are grouped within the genus Lentibacillus and most closely
related to Lentibacillus juripiscarius IS40-3T (97.4–97.6% similarity)
isolated from fish sauce in Thailand. OrthoANI value
between two novel strains and Lentibacillus lipolyticus SSKP1-
9T (79.5–79.6% similarity) was far lower than the species demarcation
threshold. Comparative genomic analysis displayed
differences between the two strains as well as among other
strains belonging to Lentibacillus. Furthermore, each isolate
had strain-specific groups of orthologous genes based on pangenome
analysis. Genomic G + C contents of strains NKC-
220-2T and NKC851-2 were 41.9 and 42.2 mol%, respectively.
The strains contained meso-diaminopimelic acid in their
cell walls, and the major menaquinone was menaquinone-7.
Phosphatidylglycerol, diphosphatidylglycerol, and an unidentified
glycolipid, aminophospholipid, and phospholipid were
the major polar lipid components of both strains. The major
cellular fatty acids of the strains were anteiso-C15:0 and anteiso-
C17:0. Based on phenotypic, genomic, phylogenetic, and
chemotaxonomic features, strains NKC220-2T and NKC851-2
represent novel species of the genus Lentibacillus, for which
the name Lentibacillus cibarius sp. nov. is proposed. The type
strain is NKC220-2T (= KACC 21232T = JCM 33390T).
-
Citations
Citations to this article as recorded by - Identification of Roseomonas xinghualingensis sp. nov. isolated from hospital air
Zhiming Kang, Wenjing Lei, Ji Pu, Lijun Zhao, Guowen Min, Yufeng Liu, Wenjuan Chang, Yuqian Gao, Kui Dong, Bin Sun
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Detection of the Microbial Composition of Some Commercial Fermented Liquid Products via Metagenomic Analysis
Cansu Çelik Doğan, Hafize Tuğba Yüksel Dolgun, Serkan İkiz, Şükrü Kırkan, Uğur Parın
Foods.2023; 12(19): 3538. CrossRef -
Lentibacillus daqui sp. nov., isolated from high-temperature Daqu, a starter for production of Chinese Jiang-flavour Baijiu
Yuan Liang, Zhen-Ming Lu, Wei Shi, Lin-Huan Wu, Li-Juan Chai, Xiao-Juan Zhang, Su-Yi Zhang, Song-Tao Wang, Cai-Hong Shen, Zheng-Hong Xu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Occurrence of biogenic amines and their correlation with bacterial communities in the Ivorian traditional fermented fish adjuevan during the storage
Marina Ghislaine Abré, Clémentine Amenan Kouakou-Kouamé, Florent Kouadio N’guessan, Corinne Teyssier, Didier Montet
Folia Microbiologica.2023; 68(2): 257. CrossRef - Description of Corynebacterium poyangense sp. nov., isolated from the feces of the greater white-fronted geese (Anser albifrons)
Qian Liu, Guoying Fan, Kui Wu, Xiangning Bai, Xi Yang, Wentao Song, Shengen Chen, Yanwen Xiong, Haiying Chen
Journal of Microbiology.2022; 60(7): 668. CrossRef -
Parasphingorhabdus cellanae sp. nov., isolated from the gut of a Korean limpet, Cellana toreuma
Ji-Ho Yoo, Jeong Eun Han, June-Young Lee, Su-Won Jeong, Yun-Seok Jeong, Jae-Yun Lee, So-Yeon Lee, Hojun Sung, Euon Jung Tak, Hyun Sik Kim, Pil Soo Kim, Jee-Won Choi, Do-Yeon Kim, In Chul Jeong, Do-Hun Gim, Seo Min Kang, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov.
Wentao Zhu, Juan Zhou, Shan Lu, Jing Yang, Xin-He Lai, Dong Jin, Ji Pu, Yuyuan Huang, Liyun Liu, Zhenjun Li, Jianguo Xu
Journal of Microbiology.2022; 60(2): 137. CrossRef - The Methods of Digging for “Gold” within the Salt: Characterization of Halophilic Prokaryotes and Identification of Their Valuable Biological Products Using Sequencing and Genome Mining Tools
Jakub Lach, Paulina Jęcz, Dominik Strapagiel, Agnieszka Matera-Witkiewicz, Paweł Stączek
Genes.2021; 12(11): 1756. CrossRef - Lentibacillus saliphilus. sp. nov., a moderately halophilic bacterium isolated from a saltern in Korea
Yun Wang, Gang-Qiang Jiang, Hong-Ping Lin, Peng Sun, Hong-Yan Zhang, Dong-Mei Lu, Li-Yun Wang, Chang-Jin Kim, Shu-Kun Tang
Archives of Microbiology.2021; 203(2): 621. CrossRef - Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
Young Joon Oh, Joon Yong Kim, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2021; 59(5): 460. CrossRef - Flaviflexus ciconiae sp. nov., isolated from the faeces of the oriental stork, Ciconia boyciana
Jae-Yun Lee, Woorim Kang, Pil Soo Kim, So-Yeon Lee, Na-Ri Shin, Hojun Sung, June-Young Lee, Ji-Hyun Yun, Yun-Seok Jeong, Jeong Eun Han, Mi-Ja Jung, Dong-Wook Hyun, Hyun Sik Kim, Euon Jung Tak, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology.2020; 70(10): 5439. CrossRef - List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef
- Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi
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Young Joon Oh , Joon Yong Kim , Hyo Kyeong Park , Ja-Young Jang , Seul Ki Lim , Min-Sung Kwon , Hak-Jong Choi
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J. Microbiol. 2019;57(11):997-1002. Published online October 28, 2019
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DOI: https://doi.org/10.1007/s12275-019-9421-z
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94
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2
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3
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Abstract
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A Gram-stain-positive, rod-shaped, alkalitolerant, and halophilic
bacterium–designated as strain NKC3-5T–was isolated
from kimchi that was collected from the Geumsan area
in the Republic of Korea. Cells of isolated strain NKC3-5T
were 0.5–0.7μm wide and 1.4–2.8 μm long. The strain
NKC3-5T could grow at up to 20.0% (w/v) NaCl (optimum
10%), pH 6.5–10.0 (optimum pH 9.0), and 25–40°C (optimum
35°C). The cells were able to reduce nitrate under aerobic
conditions, which is the first report in the genus Salicibibacter.
The genome size and genomic G + C content of
strain NKC3-5T were 3,754,174 bp and 45.9 mol%, respectively;
it contained 3,630 coding sequences, 16S rRNA genes
(six 16S, five 5S, and five 23S), and 59 tRNA genes. Phylogenetic
analysis based on 16S rRNA showed that strain NKC-
3-5T clustered with bacterium Salicibibacter kimchii NKC1-1T,
with a similarity of 96.2–97.6%, but formed a distinct branch
with other published species of the family Bacillaceae. In addition,
OrthoANI value between strain NKC3-5T and Salicibibacter
kimchii NKC1-1T was far lower than the species demarcation
threshold. Using functional genome annotation,
the result found that carbohydrate, amino acid, and vitamin
metabolism related genes were highly distributed in the genome
of strain NKC3-5T. Comparative genomic analysis revealed
that strain NKC3-5T had 716 pan-genome orthologous
groups (POGs), dominated with carbohydrate metabolism.
Phylogenomic analysis based on the concatenated core
POGs revealed that strain NKC3-5T was closely related to
Salicibibacter kimchii. The predominant polar lipids were
phosphatidylglycerol and two unidentified lipids. Anteiso-
C15:0, iso-C17:0, anteiso-C17:0, and iso-C15:0 were the major cellular
fatty acids, and menaquinone-7 was the major isoprenoid
quinone present in strain NKC3-5T. Cell wall peptidoglycan
analysis of strain NKC3-5T showed that meso-diaminopimelic
acid was the diagnostic diamino acid. The phenotypic,
genomic, phylogenetic, and chemotaxonomic properties
reveal that the strain represents a novel species of
the genus Salicibibacter, for which the name Salicibibacter
halophilus sp. nov. is proposed, with the type strain NKC3-5T
(= KACC 21230T = JCM 33437T).
-
Citations
Citations to this article as recorded by - Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
Young Joon Oh, Joon Yong Kim, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2021; 59(5): 460. CrossRef - The Methods of Digging for “Gold” within the Salt: Characterization of Halophilic Prokaryotes and Identification of Their Valuable Biological Products Using Sequencing and Genome Mining Tools
Jakub Lach, Paulina Jęcz, Dominik Strapagiel, Agnieszka Matera-Witkiewicz, Paweł Stączek
Genes.2021; 12(11): 1756. CrossRef - List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef
- Salicibibacter kimchii gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium in the family Bacillaceae, isolated from kimchi
-
Ja-Young Jang , Young Joon Oh , Seul Ki Lim , Hyo Kyeong Park , Changsu Lee , Joon Yong Kim , Mi-Ai Lee , Hak-Jong Choi
-
J. Microbiol. 2018;56(12):880-885. Published online October 25, 2018
-
DOI: https://doi.org/10.1007/s12275-018-8518-0
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94
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11
Web of Science
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12
Crossref
-
Abstract
-
A moderately halophilic and alkalitolerant bacterial strain
NKC1-1T was isolated from commercial kimchi in Korea.
Strain NKC1-1T was Gram-stain-positive, aerobic, rod-shaped,
non-motile, and contained diaminopimelic acid-type murein.
Cell growth was observed in a medium containing 0–25%
(w/v) NaCl (optimal at 10% [w/v]), at 20–40°C (optimal at
37°C) and pH 6.5–10.0 (optimal at pH 9.0). The major isoprenoid
quinone of the isolate was menaquinone-7, and the
major polar lipids were phosphatidylglycerol and unidentified
phospholipids. Cell membrane of the strain contained
iso-C17:0 and anteiso-C15:0 as the major fatty acids. Its DNA
G + C content was 45.2 mol%. Phylogenetic analysis indicated
the strain to be most closely related to Geomicrobium halophilum
with 92.7–92.9% 16S rRNA gene sequence similarity.
Based on polyphasic taxonomic evaluation with phenotypic,
phylogenetic, and chemotaxonomic analyses, the strain represents
a novel species in a new genus, for which the name
Salicibibacter kimchii gen. nov., sp. nov. is proposed (= CECT
9537T; KCCM 43276T).
-
Citations
Citations to this article as recorded by - A taxonomic note on the order Caryophanales: description of 12 novel families and emended description of 21 families
Yangjie Li, Dechao Zhang, Dexin Bo, Donghai Peng, Ming Sun, Jinshui Zheng
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Bacillales: From Taxonomy to Biotechnological and Industrial Perspectives
Sharareh Harirchi, Taner Sar, Mohaddaseh Ramezani, Habibu Aliyu, Zahra Etemadifar, Seyed Ali Nojoumi, Fatemeh Yazdian, Mukesh Kumar Awasthi, Mohammad J. Taherzadeh
Microorganisms.2022; 10(12): 2355. CrossRef - Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
Young Joon Oh, Joon Yong Kim, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2021; 59(5): 460. CrossRef - The Methods of Digging for “Gold” within the Salt: Characterization of Halophilic Prokaryotes and Identification of Their Valuable Biological Products Using Sequencing and Genome Mining Tools
Jakub Lach, Paulina Jęcz, Dominik Strapagiel, Agnieszka Matera-Witkiewicz, Paweł Stączek
Genes.2021; 12(11): 1756. CrossRef - Genomic characterization of nine Clostridioides difficile strains isolated from Korean patients with Clostridioides difficile infection
Seung Woo Ahn, Se Hee Lee, Uh Jin Kim, Hee-Chang Jang, Hak-Jong Choi, Hyon E. Choy, Seung Ji Kang, Seong Woon Roh
Gut Pathogens.2021;[Epub] CrossRef - Haloplanus rubicundus sp. nov., an extremely halophilic archaeon isolated from solar salt
Yeon Bee Kim, Joon Yong Kim, Hye Seon Song, Se Hee Lee, Na-Ri Shin, Jin-Woo Bae, Jinjong Myoung, Ki-Eun Lee, In-Tae Cha, Jin-Kyu Rhee, Seong Woon Roh
Systematic and Applied Microbiology.2020; 43(3): 126085. CrossRef - Characterization of a potential probiotic bacterium Lactococcus raffinolactis WiKim0068 isolated from fermented vegetable using genomic and in vitro analyses
Min Young Jung, Changsu Lee, Myung-Ji Seo, Seong Woon Roh, Se Hee Lee
BMC Microbiology.2020;[Epub] CrossRef - Lentibacillus cibarius sp. nov., isolated from kimchi, a Korean fermented food
Young Joon Oh, Joon Yong Kim, Hee Eun Jo, Hyo Kyeong Park, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2020; 58(5): 387. CrossRef - Effects of an auxin-producing symbiotic bacterium on cell growth of the microalga Haematococcus pluvialis: Elevation of cell density and prolongation of exponential stage
Changsu Lee, Min Seo Jeon, Joon Yong Kim, Se Hee Lee, Dae Geun Kim, Seong Woon Roh, Yoon-E Choi
Algal Research.2019; 41: 101547. CrossRef - Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi
Young Joon Oh, Joon Yong Kim, Hyo Kyeong Park, Ja-Young Jang, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2019; 57(11): 997. CrossRef - List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef - Propionibacterium freudenreichii CIRM-BIA 129 Osmoadaptation Coupled to Acid-Adaptation Increases Its Viability During Freeze-Drying
Floriane Gaucher, Koffigan Kponouglo, Houem Rabah, Sylvie Bonnassie, Jordane Ossemond, Sandrine Pottier, Julien Jardin, Valérie Briard-Bion, Pierre Marchand, Philippe Blanc, Romain Jeantet, Gwénaël Jan
Frontiers in Microbiology.2019;[Epub] CrossRef
- REVIEW] Mind-altering with the gut: Modulation of the gut-brain axis with probiotics
-
Namhee Kim , Misun Yun , Young Joon Oh , Hak-Jong Choi
-
J. Microbiol. 2018;56(3):172-182. Published online February 28, 2018
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DOI: https://doi.org/10.1007/s12275-018-8032-4
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74
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Abstract
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It is increasingly evident that bidirectional interactions exist
among the gastrointestinal tract, the enteric nervous system,
and the central nervous system. Recent preclinical and clinical
trials have shown that gut microbiota plays an important role
in these gut-brain interactions. Furthermore, alterations in gut
microbiota composition may be associated with pathogenesis
of various neurological disorders, including stress, autism, depression,
Parkinson’s disease, and Alzheimer’s disease. Therefore,
the concepts of the microbiota-gut-brain axis is emerging.
Here, we review the role of gut microbiota in bidirectional
interactions between the gut and the brain, including
neural, immune-mediated, and metabolic mechanisms. We
highlight recent advances in the understanding of probiotic
modulation of neurological and neuropsychiatric disorders
via the gut-brain axis.
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- Virgibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi
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Young Joon Oh , Ja-Young Jang , Seul Ki Lim , Min-Sung Kwon , Jieun Lee , NamHee Kim , Mi-Young Shin , Hyo Kyeong Park , Myung-Ji Seo , Hak-Jong Choi
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J. Microbiol. 2017;55(12):933-938. Published online December 7, 2017
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DOI: https://doi.org/10.1007/s12275-017-7386-3
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76
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Abstract
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A Gram-stain-positive, halophilic, rod-shaped, non-motile,
spore forming bacterium, strain NKC1-2T, was isolated from
kimchi, a Korean fermented food. Comparative analysis based
on 16S rRNA gene sequence demonstrated that the isolated
strain was a species of the genus Virgibacillus. Strain NKC1-
2T exhibited high level of 16S rRNA gene sequence similarity
with the type strains of Virgibacillus xinjiangensis SL6-1T
(96.9%), V. sediminis YIM kkny3T (96.8%), and V. salarius
SA-Vb1T (96.7%). The isolate grew at pH 6.5–10.0 (optimum,
pH 8.5–9.0), 0.0–25.0% (w/v) NaCl (optimum, 10–15% NaCl),
and 15–50°C (optimum, 37°C). The major menaquinone in
the strain was menaquinone-7, and the main peptidoglycan
of the strain was meso-diaminopimelic acid. The predominant
fatty acids of the strain were iso-C14:0, anteisio-C15:0, iso-
C15:0, and iso-C16:0 (other components were < 10.0%). The
polar lipids consisted of diphosphatidylglycerol and phosphatidylglycerol.
The genomic DNA G + C content of NKC1-2T
was 42.5 mol%. On the basis of these findings, strain NKC1-
2T is proposed as a novel species in the genus Virgibacillus,
for which the name Virgibacillus kimchii sp. nov. is proposed
(=KACC 19404T =JCM 32284T). The type strain of Virgibacillus
kimchii is NKC1-2T.
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Citations
Citations to this article as recorded by - Virgibacillus saliphilus sp. nov. and Virgibacillus salidurans sp. nov., isolated from kimchi
Young Joon Oh, Joon Yong Kim, Min-Sung Kwon, Sulhee Lee, Sang-Pil Choi, Hak-Jong Choi
Journal of Microbiology.2025; 63(1): e:2501001. CrossRef - Bioprospecting for moderately halophilic eubacteria for potential biotechnological applications from Sambhar Lake, Rajasthan, India
Saloni Singh, Ayushi Goyal, Kakoli Dutt
The Applied Biology & Chemistry Journal.2024; : 12. CrossRef - Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
Young Joon Oh, Joon Yong Kim, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2021; 59(5): 460. CrossRef - Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi
Young Joon Oh, Joon Yong Kim, Hyo Kyeong Park, Ja-Young Jang, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2019; 57(11): 997. CrossRef - Mining biosynthetic gene clusters in Virgibacillus genomes
Ghofran Othoum, Salim Bougouffa, Ameerah Bokhari, Feras F. Lafi, Takashi Gojobori, Heribert Hirt, Ivan Mijakovic, Vladimir B. Bajic, Magbubah Essack
BMC Genomics.2019;[Epub] CrossRef - List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef - Community structures and genomic features of undesirable white colony-forming yeasts on fermented vegetables
Joon Yong Kim, Juseok Kim, In-Tae Cha, Min Young Jung, Hye Seon Song, Yeon Bee Kim, Changsu Lee, Seung-Yeon Kang, Jin-Woo Bae, Yoon-E Choi, Tae-Woon Kim, Seong Woon Roh
Journal of Microbiology.2019; 57(1): 30. CrossRef - Salicibibacter kimchii gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium in the family Bacillaceae, isolated from kimchi
Ja-Young Jang, Young Joon Oh, Seul Ki Lim, Hyo Kyeong Park, Changsu Lee, Joon Yong Kim, Mi-Ai Lee, Hak-Jong Choi
Journal of Microbiology.2018; 56(12): 880. CrossRef - Lactobacillus curvatusHY7601 andLactobacillus plantarumKY1032 Cell Extracts Inhibit Adipogenesis in 3T3-L1 and HepG2 Cells
Woon Hee Jeung, Jae-Jung Shim, Seon-Wook Woo, Jae-Hun Sim, Jung-Lyoul Lee
Journal of Medicinal Food.2018; 21(9): 876. CrossRef
- Gracilibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi§
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Young Joon Oh , Hae-Won Lee , Seul Ki Lim , Min-Sung Kwon , Jieun Lee , Ja-Young Jang , Hae Woong Park , Young-Do Nam , Myung-Ji Seo , Hak-Jong Choi
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J. Microbiol. 2016;54(9):588-593. Published online August 31, 2016
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DOI: https://doi.org/10.1007/s12275-016-6349-4
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82
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12
Crossref
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Abstract
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A novel halophilic bacterium, strain K7T, was isolated from
kimchi, a traditional Korean fermented food. The strain is
Gram-positive, motile, and produces terminal endospores.
The isolate is facultative aerobic and grows at salinities of
0.0–25.0% (w/v) NaCl (optimum 10–15% NaCl), pH 5.5–8.5
(optimum pH 7.0–7.5), and 15–42°C (optimum 37°C). The
predominant isoprenoid quinone in the strain is menaquinone-
7 and the peptidoglycan of the strain is meso-diaminopimelic
acid. The major fatty acids of the strain are anteisio-
C15:0, iso-C15:0, and, C16:0 (other components were < 10.0%),
while the major polar lipids are diphosphatidylglycerol, phosphatidylglycerol,
phosphatidylcholine, and three unidentified
lipids. A phylogenetic analysis of 16S rRNA gene sequence
similarity showed that the isolated strain was a cluster of the
genus Gracilibacillus. High levels of gene sequence similarity
were observed between strain K7T and Gracilibacillus orientalis
XH-63T (96.5%), and between the present strain and
Gracilibacillus xinjiangensis (96.5%). The DNA G+C content
of this strain is 37.7 mol%. Based on these findings, strain
K7T is proposed as a novel species: Gracilibacillus kimchii sp.
nov. The type strain is K7T (KACC 18669T; JCM 31344T).
-
Citations
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International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Investigation on Structural Prediction of Pectate Lyase Enzymes from Different Microbes and Comparative Docking Studies with Pectin: The Economical Waste from Food Industry
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Geomicrobiology Journal.2022; 39(3-5): 294. CrossRef - Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
Young Joon Oh, Joon Yong Kim, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2021; 59(5): 460. CrossRef - Characterization of β-galactosidase and α-galactosidase activities from the halophilic bacterium Gracilibacillus dipsosauri
Charles E. Deutch, Amy M. Farden, Emily S. DiCesare
Annals of Microbiology.2021;[Epub] CrossRef -
Gracilibacillus suaedae sp. nov., an indole acetic acid-producing endophyte isolated from a root of Suaeda salsa
Xiao-Xian Huang, Lian Xu, Ji-Quan Sun
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Genomic sequencing of Gracilibacillus dipsosauri reveals key properties of a salt-tolerant α-amylase
Charles E. Deutch, Shanshan Yang
Antonie van Leeuwenhoek.2020; 113(7): 1049. CrossRef - Lentibacillus cibarius sp. nov., isolated from kimchi, a Korean fermented food
Young Joon Oh, Joon Yong Kim, Hee Eun Jo, Hyo Kyeong Park, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2020; 58(5): 387. CrossRef - Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi
Young Joon Oh, Joon Yong Kim, Hyo Kyeong Park, Ja-Young Jang, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2019; 57(11): 997. CrossRef - List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef - Salicibibacter kimchii gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium in the family Bacillaceae, isolated from kimchi
Ja-Young Jang, Young Joon Oh, Seul Ki Lim, Hyo Kyeong Park, Changsu Lee, Joon Yong Kim, Mi-Ai Lee, Hak-Jong Choi
Journal of Microbiology.2018; 56(12): 880. CrossRef - Virgibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi
Young Joon Oh, Ja-Young Jang, Seul Ki Lim, Min-Sung Kwon, Jieun Lee, NamHee Kim, Mi-Young Shin, Hyo Kyeong Park, Myung-Ji Seo, Hak-Jong Choi
Journal of Microbiology.2017; 55(12): 933. CrossRef
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