- Ten Novel Species Belonging to the Genus Flavobacterium, Isolated from Freshwater Environments: F. praedii sp. nov., F. marginilacus sp. nov., F. aestivum sp. nov., F. flavigenum sp. nov., F. luteolum sp. nov., F. gelatinilyticum sp. nov., F. aquiphilum sp. nov., F. limnophilum sp. nov., F. lacustre
-
Hyunyoung Jo , Miri S. Park , Yeonjung Lim , Ilnam Kang , Jang-Cheon Cho
-
J. Microbiol. 2023;61(5):495-510. Published online May 23, 2023
-
DOI: https://doi.org/10.1007/s12275-023-00054-4
-
-
91
View
-
0
Download
-
9
Web of Science
-
8
Crossref
-
 Abstract
-
Eleven bacterial strains were isolated from freshwater environments and identified as Flavobacterium based on 16S rRNA
gene sequence analyses. Complete genome sequences of the 11 strains ranged from 3.45 to 5.83 Mb with G + C contents
of 33.41–37.31%. The average nucleotide identity (ANI) values showed that strains IMCC34515T
and IMCC34518 belonged to the same species, while the other nine strains represented each separate species. The ANI values between
the strains and their closest Flavobacterium species exhibited ≤ 91.76%, indicating they represent each novel species. All
strains had similar characteristics such as being Gram-stain-negative, rod-shaped, and contained iso-C15:0 as the predominant
fatty acid, menaquinone-6 as the respiratory quinone, and phosphatidylethanolamine and aminolipids as major polar
lipids. Genomic, phylogenetic, and phenotypic characterization confirmed that the 11 strains were distinct from previously
recognized Flavobacterium species. Therefore, Flavobacterium praedii sp. nov. (IMCC34515T = KACC 22282T = NBRC 114937T),
Flavobacterium marginilacus sp. nov. (IMCC34673T = KACC 22284T = NBRC 114940T), Flavobacterium aestivum sp. nov.
(IMCC34774T = KACC 22285T = NBRC 114941T), Flavobacterium flavigenum sp. nov. (IMCC34775T = KACC22286T = NBRC 114942T),
Flavobacterium luteolum sp. nov. (IMCC34776T = KACC 22287T = NBRC 114943T), Flavobacterium gelatinilyticum sp. nov.
(IMCC34777T = KACC 22288T = NBRC 114944T), Flavobacterium aquiphilum sp.nov. (IMCC34779T = KACC 22289T = NBRC 114945T),
Flavobacterium limnophilum sp. nov. (IMCC36791T = KACC22290T = NBRC 114947T), Flavobacterium lacustre sp. nov.
(IMCC36792T = KACC 22291T = NBRC 114948T), and Flavobacterium eburneipallidum sp. nov. (IMCC36793T = KACC 22292T = NBRC 114949T)
are proposed as novel species.
-
Citations
Citations to this article as recorded by  - Indoor pollution of funeral homes and potential health risk of workers: A case study in central China
Jinjun Ye, Zhengtao Ai, Lup Wai Chew
Building and Environment.2025; 272: 112677. CrossRef -
Flavobacterium magnesitis sp. nov. and Flavobacterium zubiriense sp. nov., two novel Flavobacterium species isolated from alkaline magnesite residues
Leonor Matos, Lorrie Maccarrio, Ana Paula Chung, Diogo N. Proença, Søren Sørensen, Paula V. Morais, Romeu Francisco
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Comprehensive genome analysis of five novel flavobacteria: Flavobacterium piscisymbiosum sp. nov., Flavobacterium pisciphilum sp. nov., Flavobacterium flavipigmentatum sp. nov., Flavobacterium lipolyticum sp. nov. and Flavobacterium cupriresistens sp. nov
Izzet Burcin Saticioglu, Hilal Ay, Soner Altun, Nihed Ajmi, Enes Said Gunduz, Huban Gocmen, Muhammed Duman
Systematic and Applied Microbiology.2024; 47(4): 126518. CrossRef - Leuconostoc aquikimchii sp. nov., a Lactic Acid Bacterium Isolated from Cabbage Watery Kimchi
Subin Kim, Se Hee Lee, Ki Hyun Kim, Misun Yun
Journal of Microbiology.2024; 62(12): 1089. CrossRef - Overproduction of Xanthophyll Pigment in Flavobacterium sp. JSWR-1 under Optimized Culture Conditions
Jegadeesh Raman, Young-Joon Ko, Jeong-Seon Kim, Da-Hye Kim, Soo-Jin Kim
Journal of Microbiology and Biotechnology.2024; 34(3): 710. CrossRef - Flavobacterium rivulicola sp. nov., Isolated from a Freshwater Stream
Sumin Kim, Miri S. Park, Ilnam Kang, Jang-Cheon Cho
Current Microbiology.2024;[Epub] CrossRef - Congregibacter variabilis sp. nov. and Congregibacter brevis sp. nov. Within the OM60/NOR5 Clade, Isolated from Seawater, and Emended Description of the Genus Congregibacter
Hyeonsu Tak, Miri S. Park, Hyerim Cho, Yeonjung Lim, Jang-Cheon Cho
Journal of Microbiology.2024; 62(9): 739. CrossRef - Validation List no. 213. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef
- Isolation and genome analysis of Winogradskyella algicola sp. nov., the dominant bacterial species associated with the green alga Dunaliella tertiolecta
-
Jaeho Song , Yeonjung Lim , Hye-Jin Jang , Yochan Joung , Ilnam Kang , Seong-Joo Hong , Choul-Gyun Lee , Jang-Cheon Cho
-
J. Microbiol. 2019;57(11):982-990. Published online October 28, 2019
-
DOI: https://doi.org/10.1007/s12275-019-9378-y
-
-
75
View
-
0
Download
-
4
Web of Science
-
4
Crossref
-
Abstract
-
Microalgae and bacteria are known to be closely associated in
diverse environments. To isolate dominant bacterial species
associated with a green alga, Dunaliella tertiolecta, a photoreactor
culture of the microalga was investigated using culture-
based and culture-independent approaches. The bacterial
community structure of the algal culture showed that
the most abundant bacterial species under the culture conditions
was related to the genus Winogradskyella. The closely
related amplicon sequences, showing ≥ 99.5% 16S rRNA gene
sequence similarity to one of the isolates, designated IMCC-
33238T, constituted > 49% of the bacterial community and
was therefore regarded as the most dominant species in the
algal culture. Strain IMCC33238T was characterized by Gramstaining-
negative and orange-colored rods. Phylogenetic analyses
of the 16S rRNA genes as well as whole genome sequences
revealed that strain IMCC33238T belonged to Winogradskyella
and shared more than 97.2% 16S rRNA gene sequence
similarity with Winogradskyella species. The strain
contained iso-C15:1 G, iso-C15:0, iso-C15:0 3-OH, and summed
feature 3 (C16:1 ω6c and/or C16:1 ω7c) as major fatty acids and
MK-6 as the predominant quinone. The polar lipids found
in strain IMCC33238T were phosphatidylethanolamine, two
unidentified aminolipids, and three unidentified lipids. The
genome of strain IMCC33238T was 3.37 Mbp in size with
33.9 mol% G + C content and proteorhodopsin. Many genes
encoding folate and vitamin production are considered to play
an important role in the bacteria-algae interaction. On the
basis of phylogenetic and phenotypic characteristics, strain
IMCC33238T represents a novel species in the genus Winogradskyella,
for which the name Winogradskyella algicola sp.
nov. is proposed. The type strain is IMCC33238T (= KACC
21192T = NBRC 113704T).
-
Citations
Citations to this article as recorded by - Bacillus sp. enhances the interspecific competitiveness of its host Cyclotella atomus
Zhengbo Zhou, Jiayi Cao, Minnan Wu, Wen Yang, Lin Zhang, Xiaojun Yan, Jilin Xu
Aquaculture.2025; 595: 741577. CrossRef -
Winogradskyella vincentii sp. nov. and Winogradskyella alexanderae sp. nov., two novel bacteria isolated from intertidal sediment
Yu-Yan Yue, Yu-Qi Ye, Zi-Yang Zhou, Meng-Di Zhang, Ya-Wei Jia, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George Garrity
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(7): 4043. CrossRef - Taxonomic study of nine new Winogradskyella species occurring in the shallow waters of Helgoland Roads, North Sea. Proposal of Winogradskyella schleiferi sp. nov., Winogradskyella costae sp. nov., Winogradskyella helgolandensis sp. nov., Winogradskyella v
Carlota Alejandre-Colomo, Tomeu Viver, Mercedes Urdiain, Ben Francis, Jens Harder, Peter Kämpfer, Rudolf Amann, Ramon Rosselló-Móra
Systematic and Applied Microbiology.2020; 43(6): 126128. CrossRef
|
MSK
