Journal of Microbiology

Woo Jun Sul

8 Articles

Bacterial Crosstalk via Antimicrobial Peptides on the Human Skin: Therapeutics from a Sustainable Perspective: Seon Mi Lee , Hye Lim Keum , Woo Jun Sul; J. Microbiol. 2023;61(1):1-11. Published online January 31, 2023; DOI: https://doi.org/10.1007/s12275-022-00002-8

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The skin’s epidermis is an essential barrier as the first guard against invading pathogens, and physical protector from external injury. The skin microbiome, which consists of numerous bacteria, fungi, viruses, and archaea on the epidermis, play a key role in skin homeostasis. Antibiotics are a fast-acting and effective treatment method, however, antibiotic use is a nuisance that can disrupt skin homeostasis by eradicating beneficial bacteria along with the intended pathogens and cause antibioticresistant bacteria spread. Increased numbers of antimicrobial peptides (AMPs) derived from humans and bacteria have been reported, and their roles have been well defined. Recently, modulation of the skin microbiome with AMPs rather than artificially synthesized antibiotics has attracted the attention of researchers as many antibiotic-resistant strains make treatment mediation difficult in the context of ecological problems. Herein, we discuss the overall insights into the skin microbiome, including its regulation by different AMPs, as well as their composition and role in health and disease.

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Journal of Advanced Research.2025; 68: 359. CrossRef
Marine algal polysaccharides: Multifunctional bioactive ingredients for cosmetic formulations
Si-Yuan Lu, Tao Zhou, Iqra Shabbir, Jaehwan Choi, Young Heui Kim, Myeongsam Park, Jude Juventus Aweya, Karsoon Tan, Saiyi Zhong, Kit-Leong Cheong
Carbohydrate Polymers.2025; 353: 123276. CrossRef
A review on pathogenicity of Aeromonas hydrophila and their mitigation through medicinal herbs in aquaculture
Anurag Semwal, Avdhesh Kumar, Neelesh Kumar
Heliyon.2023; 9(3): e14088. CrossRef
Fırtına Deresindeki Gökkuşağı Alabalık Çiftliklerinde İzole Edilen Aeromonas spp. İzolatlarının Antimikrobiyel Hassasiyetin Belirlenmesi
Fikri BALTA
Journal of Anatolian Environmental and Animal Sciences.2020; 5(3): 397. CrossRef
Monitoring microbial community structure and succession of an A/O SBR during start-up period using PCR-DGGE
Xiuheng WANG, Kun ZHANG, Nanqi REN, Nan LI, Lijiao REN
Journal of Environmental Sciences.2009; 21(2): 223. CrossRef

[MINIREVIEW]Glaciers as microbial habitats: current knowledge and implication: Soyeon Kim , Hanbyul Lee , Soon-Do Hur , Woo Jun Sul , Ok-Sun Kim; J. Microbiol. 2022;60(8):767-779. Published online July 29, 2022; DOI: https://doi.org/10.1007/s12275-022-2275-9

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Abstract

Glaciers, formed from the gradual accumulation of snow, can be continuous records representing past environments and recognized as a time capsule of our planetary evolution. Due to extremely harsh conditions, glacial ice has long been considered an uninhabitable ecosystem for microorganisms to sustain their life. However, recent developments in microbiological analysis techniques revealed the presence of unexpectedly diverse microbial strains. Glacial microorganisms could also provide valuable information, including not only biological diversity and structure but also molecular systematics, metabolic profiles, and evolutionary changes from the past climate and ecosystem. However, there are several obstacles in investigating the glacier environment, such as low regional accessibility, technical difficulties of ice coring, potential contamination during the sampling process, and low microbial biomass. This review aims to summarize recent knowledge on decontamination methods, biomass, diversity based on culture-dependent and -independent methods, application of biological proxies, greenhouse gas production and adaptive strategies in glaciers from various regions and to imply further directions for a comprehensive understanding of habitatility in an icy world including outer of our planet.

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In Jae Jeong, Jin‐Kyung Hong, Young Jun Bae, Tea Kwon Lee
Cytometry Part A.2025; 107(3): 203. CrossRef
Research progress and application of bacterial traceability technology
Wei Wang, Bichun Zhao, Hanyu Zhang, Zhaowei Jie, Can Hu, Hongling Guo, Ping Wang, Yajun Li, Jun Zhu, Hongcheng Mei, Jian Ye
Forensic Science International.2024; 365: 112275. CrossRef
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Sonia Tamang, Prayatna Sharma, Santosh Kumar, Nagendra Thakur
Polar Science.2024; 40: 101034. CrossRef
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Jacopo Aguzzi, Javier Cuadros, Lewis Dartnell, Corrado Costa, Simona Violino, Loredana Canfora, Roberto Danovaro, Nathan Jack Robinson, Donato Giovannelli, Sascha Flögel, Sergio Stefanni, Damianos Chatzievangelou, Simone Marini, Giacomo Picardi, Bernard F
Life.2024; 14(6): 676. CrossRef
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Liang Shen, Yongqin Liu, Liangzhong Chen, Tingting Lei, Ping Ren, Mukan Ji, Weizhi Song, Hao Lin, Wei Su, Sheng Wang, Marianne Rooman, Fabrizio Pucci
The ISME Journal.2024;[Epub] CrossRef
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Liang Shen, Jiayu Hu, Luyao Zhang, Zirui Wu, Liangzhong Chen, Namita Paudel Adhikari, Mukan Ji, Shaoxing Chen, Fang Peng, Yongqin Liu
BMC Biology.2024;[Epub] CrossRef
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Liangzhong Chen, Tao Hong, Zirui Wu, Weizhi Song, Shaoxing X. Chen, Yongqin Liu, Liang Shen
BMC Genomics.2023;[Epub] CrossRef
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Sif Marie Holmberg, Niels O. G. Jørgensen
Polar Biology.2023; 46(5): 381. CrossRef
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Ate H Jaarsma, Katie Sipes, Athanasios Zervas, Francisco Campuzano Jiménez, Lea Ellegaard-Jensen, Mariane S Thøgersen, Peter Stougaard, Liane G Benning, Martyn Tranter, Alexandre M Anesio
FEMS Microbiology Ecology.2023;[Epub] CrossRef
Snow Surface Microbial Diversity at the Detection Limit within the Vicinity of the Concordia Station, Antarctica
Alessandro Napoli, Claudia Coleine, Nikea Ulrich, Ralf Moeller, Daniela Billi, Laura Selbmann
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[Erratum] A split face study on the effect of an anti-acne product containing fermentation products of Enterococcus faecalis CBT SL-5 on skin microbiome modification and acne improvement: Hye Sung Han , Sun Hye Shin , Bo-Yun Choi , Nayeon Koo , Sanghyun Lim , Dooheon Son , Myung Jun Chung , Kui Young Park , Woo Jun Sul; J. Microbiol. 2022;60(7):766-766.; DOI: https://doi.org/10.1007/s12275-022-1682-2

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Skin Microbiome and Acne: Microbial Imbalances and Impact – Interview with Three Key Opinion Leaders
Brigitte Scott
EMJ Dermatology.2024; : 83. CrossRef

A split face study on the effect of an anti-acne product containing fermentation products of Enterococcus faecalis CBT SL-5 on skin microbiome modification and acne improvement: Hye Sung Han , Sun Hye Shin , Bo-Yun Choi , Nayeon Koo , Sanghyun Lim , Dooheon Son , Myung Jun Chung , Kui Young Park , Woo Jun Sul; J. Microbiol. 2022;60(5):488-495. Published online March 14, 2022; DOI: https://doi.org/10.1007/s12275-022-1520-6

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Abstract

Antibiotic-resistant Cutibacterium acnes and dysbiosis of the skin microbiome are of increasing concern in acne treatment. Enterococcus faecalis, a widely used probiotic, has shown benefits for acne treatment by exerting antimicrobial activity against C. acnes. Therefore, this study aimed to investigate the efficacy and safety of an E. faecalis CBT SL-5-extract-containing lotion in patients with mild-to-moderate acne. Twenty patients were enrolled in this randomized, placebo-controlled, split-face comparative study. Patients were treated with E. faecalis lotion on one side of the face and a vehicle lotion on the other side for 4 weeks. The efficacy outcome measures included improvement in the investigators’ assessment of acne severity, patient satisfaction, changes in skin parameters and diversity of the skin microbiome. The investigators’ assessment score was significantly improved on the test side compared to the control side, after 2 weeks (p = 0.009) and 6 weeks (p < 0.0005). However, TEWL and skin hydration were not significantly different between the two groups. The phylogenetic diversity of the skin microbiota decreased over time in the skin samples of test side. In conclusion, E. faecalis CBT SL-5 extract can be a feasible and well-tolerated option for improving acne severity and skin microbiome dysbiosis in mild-to-moderate acne patients.

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Zhanhong Li, Peihui Li, Yu Xu, Changqing Yan, Xiufen Ma, Huiying Wang, Hong Cheng, Jing Zeng, Ting Li, Xinxian Li, Jia Zhou, Jie Zhang, Jianfeng Zhou, Rongya Yang, Yan Wu, Li Li, Wei Lai, Jiangyun Zhao, Zhe Liu, Qiong Meng
Journal of Cosmetic Dermatology.2025;[Epub] CrossRef
Efficacy of Probiotic Supplements and Topical Applications in the Treatment of Acne: A Scoping Review of Current Results
Ida Ayu Manik Partha Sutema, Irma Latarissa, I Gusti Ayu Rai Widowati, Cynthia Retna Sartika, Ni Wayan Eka Ciptasari, Keri Lestari
Journal of Experimental Pharmacology.2025; Volume 17: 1. CrossRef
Acne vulgaris: advances in pathogenesis and prevention strategies
Weiping Xu, Jiahui Xu, Dandan Huang, Chen Wang, Jiajia Song, Xiaoyong Chen, Huayi Suo
European Journal of Clinical Microbiology & Infectious Diseases.2025; 44(3): 515. CrossRef
Analysis of global trends and hotspots of skin microbiome in acne: a bibliometric perspective
Lanfang Zhang, Yuan Cai, Lin Li, Jie Hu, Changsha Jia, Xu Kuang, Yi Zhou, Zhiai Lan, Chunyan Liu, Feng Jiang, Nana Sun, Ni Zeng
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Aleena Boby, Grace Lee, Nicole Natarelli, Lilia Correa
Archives of Dermatological Research.2024;[Epub] CrossRef
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Ju Hee Han, Hei Sung Kim
Journal of Microbiology.2024; 62(3): 181. CrossRef
The updates and implications of cutaneous microbiota in acne
Cong Huang, Fan Zhuo, Baoquan Han, Wenting Li, Bin Jiang, Kaoyuan Zhang, Xingling Jian, Zhenzhen Chen, Hui Li, Haiyan Huang, Xia Dou, Bo Yu
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Sara Sá, Ruben Fernandes, Álvaro Gestoso, José Mário Macedo, Daniela Martins-Mendes, Ana Cláudia Pereira, Pilar Baylina
Applied Sciences.2023; 13(21): 12086. CrossRef

Inferences in microbial structural signatures of acne microbiome and mycobiome: Jubin Kim , Taehun Park , Hye-Jin Kim , Susun An , Woo Jun Sul; J. Microbiol. 2021;59(4):369-375. Published online February 10, 2021; DOI: https://doi.org/10.1007/s12275-021-0647-1

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Abstract

Acne vulgaris, commonly known as acne, is the most common skin disorder and a multifactorial disease of the sebaceous gland. Although the pathophysiology of acne is still unclear, bacterial and fungal factors are known to be involved in. This study aimed to investigate whether the microbiomes and mycobiomes of acne patients are distinct from those of healthy subjects and to identify the structural signatures of microbiomes related to acne vulgaris. A total of 33 Korean female subjects were recruited (Acne group, n = 17; Healthy group, n = 16), and microbiome samples were collected swabbing the forehead and right cheek. To characterize the fungal and bacterial communities, 16S rRNA V4–V5 and ITS1 region, respectively, were sequenced and analysed using Qiime2. There were no significant differences in alpha and beta diversities of microbiomes between the Acne and Healthy groups. In comparison with the ratio of Cutibacterium to Staphylococcus, the acne patients had higher abundance of Staphylococcus compared to Cutibacterium than the healthy individuals. In network analysis with the dominant microorganism amplicon sequence variants (ASV) (Cutibacterium, Staphylococcus, Malassezia globosa, and Malassezia restricta) Cutibacterium acnes was identified to have hostile interactions with Staphylococcus and Malassezia globosa. Accordingly, this
results
suggest an insight into the differences in the skin microbiome and mycobiome between acne patients and healthy controls and provide possible microorganism candidates that modulate the microbiomes associated to acne vulgaris.

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Andrew Awad, Britt Christensen, Jonathan P Segal, Gayle Ross
Frontline Gastroenterology.2025; 16(2): 166. CrossRef
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Yu Chen, Lixia Peng, Yueying Li, Yusheng Peng, Siqi Dai, Kai Han, Jinge Xin
Frontiers in Cellular and Infection Microbiology.2025;[Epub] CrossRef
Interações entre malassezia restricta e o micobioma humano: uma perspectiva abrangente
Maria Vitória Cavalheiro Berlofa, Ana Carolina de Oliveira Ramos Siqueira, Yara Natércia Lima Faustino de Maria, Rafaela de Campos Oliveira, Paulo Salarrola Takao, Ana Clara da Silva, Milena Coutinho Natucci, Fabiano Bezerra Menegidio, Daniela Leite Jabes
Revista Científica Multidisciplinar Núcleo do Conhecimento.2024; : 21. CrossRef
Guidelines of care for the management of acne vulgaris
Rachel V. Reynolds, Howa Yeung, Carol E. Cheng, Fran Cook-Bolden, Seemal R. Desai, Kelly M. Druby, Esther E. Freeman, Jonette E. Keri, Linda F. Stein Gold, Jerry K.L. Tan, Megha M. Tollefson, Jonathan S. Weiss, Peggy A. Wu, Andrea L. Zaenglein, Jung Min H
Journal of the American Academy of Dermatology.2024; 90(5): 1006.e1. CrossRef
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Lene Bay, Gregor Borut Jemec, Hans Christian Ring
APMIS.2024; 132(12): 974. CrossRef
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Journal of Inflammation Research.2024; Volume 17: 1057. CrossRef
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Zainab Qaizar, Raffaella de Salvo, Gregor Bieri, Katrin Unbereit, Shannon Montgomery, Erwan Peltier
Cosmetics.2024; 11(6): 213. CrossRef
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Zitao Guo, Yuliang Yang, Qianjie Wu, Meng Liu, Leyuan Zhou, Liang Zhang, Dake Dong
Frontiers in Microbiology.2023;[Epub] CrossRef
Distinct skin microbiome modulation following different topical acne treatments in mild acne vulgaris patients: A randomized, investigator‐blinded exploratory study
Chanidapa Wongtada, Pinidphon Prombutara, Pravit Asawanonda, Nopadon Noppakun, Chanat Kumtornrut, Tanittha Chatsuwan
Experimental Dermatology.2023; 32(6): 906. CrossRef
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Lang Sun, Qingqun Wang, Huan Wang, Jing Huang, Zheng Yu
Experimental Dermatology.2023; 32(12): 2102. CrossRef
Truncal acne following JAK inhibitor use in vitiligo with rare opportunistic fungal infections: Two case reports
Jee Yun Doh, Piyapat Rintarhat, Won Hee Jung, Hei Sung Kim
JAAD Case Reports.2023; 37: 123. CrossRef
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Skin Appendage Disorders.2022; 8(5): 376. CrossRef
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Journal of Clinical Medicine.2022; 11(13): 3660. CrossRef
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Yan-Ren Wang, Ting Zhu, Fan-Qi Kong, Yuan-Yuan Duan, Carlos Galzote, Zhe-Xue Quan, Jan Claesen, Laura Tipton
Microbiology Spectrum.2022;[Epub] CrossRef
A split face study on the effect of an anti-acne product containing fermentation products of Enterococcus faecalis CBT SL-5 on skin microbiome modification and acne improvement
Hye Sung Han, Sun Hye Shin, Bo-Yun Choi, Nayeon Koo, Sanghyun Lim, Dooheon Son, Myung Jun Chung, Kui Young Park, Woo Jun Sul
Journal of Microbiology.2022; 60(5): 488. CrossRef
Genome of Malassezia arunalokei and Its Distribution on Facial Skin
Yong-Joon Cho, Taeyune Kim, Daniel Croll, Minji Park, Donghyeun Kim, Hye Lim Keum, Woo Jun Sul, Won Hee Jung, Teresa R. O'Meara
Microbiology Spectrum.2022;[Epub] CrossRef
Features of the Skin Microbiota in Common Inflammatory Skin Diseases
Iva Ferček, Liborija Lugović-Mihić, Arjana Tambić-Andrašević, Diana Ćesić, Ana Gverić Grginić, Iva Bešlić, Marinka Mravak-Stipetić, Iva Mihatov-Štefanović, Ana-Marija Buntić, Rok Čivljak
Life.2021; 11(9): 962. CrossRef

Prokaryotic DNA methylation and its functional roles: Hoon Je Seong , Sang-Wook Han , Woo Jun Sul; J. Microbiol. 2021;59(3):242-248. Published online February 23, 2021; DOI: https://doi.org/10.1007/s12275-021-0674-y

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Abstract

DNA methylation is known as a universal mechanism of epigenetic regulation in all kingdoms of life. Particularly, given that prokaryotes lack key elements such as histones and nucleosomes that can structurally modify DNA, DNA methylation is considered a major epigenetic regulator in these organisms. However, because DNA methylation studies have focused primarily on eukaryotes, the mechanism of prokaryotic DNA methylation has been less studied than in eukaryotes. DNA methylation in prokaryotes plays an important role in regulating not only the host defense system, but also the cell cycle, gene expression, and virulence that can respond directly to the environment. Recent advances in sequencing techniques capable of detecting methylation signals have allowed for the characterization of prokaryotic genome-wide epigenetic regulation. In this review, we describe representative examples of cellular events regulated by DNA methylation in prokaryotes, from early studies to current applications.

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DNA methylome regulates virulence and metabolism in Pseudomonas syringae
Jiadai Huang, Fang Chen, Beifang Lu, Yue Sun, Youyue Li, Canfeng Hua, Xin Deng
eLife.2025;[Epub] CrossRef
DNA methylation confers epigenetic changes in cold-adapted microorganisms in response to cold stress
Xuying Bu, Xufeng Dou, Zhe Chen, Lan Liu, Yuxia Mei, Min Ren
Extremophiles.2025;[Epub] CrossRef
The soil microbial methylome: A tool to explore the role of epigenetic memory in driving soil abiotic legacy effects
Tom Sizmur, Alexey Larionov
Soil Biology and Biochemistry.2025; 202: 109712. CrossRef
Decoding the genome and epigenome of avian Escherichia coli strains by R10.4.1 nanopore sequencing
Jingyao Wang, Xudong Liu, Yanwen Shao, Runsheng Li, Surya Paudel
Frontiers in Veterinary Science.2025;[Epub] CrossRef
Erasing Methylation Marks on DNA by Plant-Specific DEMETER Family DNA Glycosylases
Praveen Rai, Poonam Kumari, Vineet Gaur
Journal of Plant Growth Regulation.2024;[Epub] CrossRef
Irreversible Inhibition of DNMT3A by an N‐Mustard Analog of S‐Adenosyl‐L–Methionine
Nichanun Sirasunthorn, Isabelle Roseto, Lindsay Pecor, Lindsay R. Comstock
ChemBioChem.2024;[Epub] CrossRef
Restriction modification systems in archaea: A panoramic outlook
Pallavi Gulati, Ashish Singh, Sandeep Patra, Shreyas Bhat, Anil Verma
Heliyon.2024; 10(8): e27382. CrossRef
BsuMI regulates DNA transformation in Bacillus subtilis besides the defense system and the constructed strain with BsuMI-absence is applicable as a universal transformation platform for wild-type Bacillus
Zhao Xingya, Fu Xiaoping, Zhen Jie, Yang Jun, Zheng Hongchen, Bai Wenqin, Song Hui
Microbial Cell Factories.2024;[Epub] CrossRef
Toward DNA-Based Recording of Biological Processes
Hyeri Jang, Sung Sun Yim
International Journal of Molecular Sciences.2024; 25(17): 9233. CrossRef
The complete genome sequence of unculturable Mycoplasma faucium obtained through clinical metagenomic next-generation sequencing
Artur J. Sabat, Tim Durfee, Schuyler Baldwin, Viktoria Akkerboom, Andreas Voss, Alexander W. Friedrich, Erik Bathoorn
Frontiers in Cellular and Infection Microbiology.2024;[Epub] CrossRef
Approaches for Benchmarking Single-Cell Gene Regulatory Network Methods
Karamveer, Yasin Uzun
Bioinformatics and Biology Insights.2024;[Epub] CrossRef
Widespread prevalence of a methylation-dependent switch to activate an essential DNA damage response in bacteria
Aditya Kamat, Ngat T. Tran, Mohak Sharda, Neha Sontakke, Tung B. K. Le, Anjana Badrinarayanan, Lotte Søgaard-Andersen
PLOS Biology.2024; 22(3): e3002540. CrossRef
Evaluation of the enzymatic properties of DNA (cytosine-5)-methyltransferase M.ApeKI from archaea in the presence of metal ions
Mao Hayashi, Yoshinari Wada, Akira Yamamura, Hideki Inoue, Naoya Yamashita, Shigetoshi Ichimura, Yasuhiro Iida
Bioscience, Biotechnology, and Biochemistry.2024; 88(10): 1155. CrossRef
Moving toward the Inclusion of Epigenomics in Bacterial Genome Evolution: Perspectives and Challenges
Iacopo Passeri, Francesca Vaccaro, Alessio Mengoni, Camilla Fagorzi
International Journal of Molecular Sciences.2024; 25(8): 4425. CrossRef
Bacmethy: A novel and convenient tool for investigating bacterial DNA methylation pattern and their transcriptional regulation effects
Ji‐Hong Liu, Yizhou Zhang, Ning Zhou, Jiale He, Jing Xu, Zhao Cai, Liang Yang, Yang Liu
iMeta.2024;[Epub] CrossRef
Unraveling host regulation of gut microbiota through the epigenome–microbiome axis
Michael L. Pepke, Søren B. Hansen, Morten T. Limborg
Trends in Microbiology.2024; 32(12): 1229. CrossRef
Combined analysis of genome-wide DNA methylome and transcriptome reveals the first epigenetic-based antibiotic-resistance mechanism in Acinetobacter baumannii
Rosario Nicola Brancaccio, Veronica Folliero, Domenico Di Rosa, Federica Dell’Annunziata, Elena Alexandrova, Marharyta Smal, Giorgio Giurato, Giovanni Boccia, Vittorio Panetta, Rita Greco, Alessandro Weisz, Francesca Rizzo, Gianluigi Franci
Discover Bacteria.2024;[Epub] CrossRef
The evolutionary consequences of interactions between the epigenome, the genome and the environment
Pierre Baduel, Iris Sammarco, Rowan Barrett, Marta Coronado‐Zamora, Amélie Crespel, Bárbara Díez‐Rodríguez, Janay Fox, Dario Galanti, Josefa González, Alexander Jueterbock, Eric Wootton, Ewan Harney
Evolutionary Applications.2024;[Epub] CrossRef
Comparative Genomics of Pesticide-Degrading Enterococcus Symbionts of Spodoptera frugiperda (Lepidoptera: Noctuidae) Leads to the Identification of Two New Species and the Reappraisal of Insect-Associated Enterococcus Species
Ana Flávia Freitas Gomes, Luís Gustavo de Almeida, Fernando Luis Cônsoli
Microbial Ecology.2023; 86(4): 2583. CrossRef
Recent advances in phage defense systems and potential overcoming strategies
Xiaoming Yuan, Zhichao Huang, Zhenjun Zhu, Jumei Zhang, Qingping Wu, Liang Xue, Juan Wang, Yu Ding
Biotechnology Advances.2023; 65: 108152. CrossRef
Comprehensive insights into the metabolism characteristics of small RNA Qrr4 in Vibrio alginolyticus
Yanni Zhao, Ningning Zhou, Jiamin Ren, Wang Liu, Chuang Zhou, Xuefeng Chen, Jieyu Zhao, Juanjuan Cao, Jinfang Yang, Jie Han, Huan Liu
Applied Microbiology and Biotechnology.2023; 107(5-6): 1887. CrossRef
Growth condition-dependent differences in methylation imply transiently differentiated DNA methylation states in Escherichia coli
Georgia L Breckell, Olin K Silander, B. Andrews
G3.2023;[Epub] CrossRef
The DNA cytosine methylome revealed two methylation motifs in the upstream regions of genes related to morphological and physiological differentiation in Streptomyces coelicolor A(3)2 M145
Annalisa Pisciotta, Alessia Maria Sampino, Alessandro Presentato, Marco Galardini, Angel Manteca, Rosa Alduina
Scientific Reports.2023;[Epub] CrossRef
Characterisation of Type II DNA Methyltransferases of Metamycoplasma hominis
Lars Vogelgsang, Azlan Nisar, Sebastian Alexander Scharf, Anna Rommerskirchen, Dana Belick, Alexander Dilthey, Birgit Henrich
Microorganisms.2023; 11(6): 1591. CrossRef
The Restriction–Modification Systems of Clostridium carboxidivorans P7
Patrick Kottenhahn, Gabriele Philipps, Boyke Bunk, Cathrin Spröer, Stefan Jennewein
Microorganisms.2023; 11(12): 2962. CrossRef
Dual thermal ecotypes coexist within a nearly genetically identical population of the unicellular marine cyanobacteriumSynechococcus
Joshua D. Kling, Michael D. Lee, Nathan G. Walworth, Eric A. Webb, Jordan T. Coelho, Paul Wilburn, Stephanie I. Anderson, Qianqian Zhou, Chunguang Wang, Megan D. Phan, Feixue Fu, Colin T. Kremer, Elena Litchman, Tatiana A. Rynearson, David A. Hutchins
Proceedings of the National Academy of Sciences.2023;[Epub] CrossRef
Comparison of Yersinia enterocolitica DNA Methylation at Ambient and Host Temperatures
Dustin J. Van Hofwegen, Carolyn J. Hovde, Scott A. Minnich
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Suraj Joshi, Payel Ghosh, Sagar Barage, Bhakti Basu, Deepti D. Deobagkar
Microbiological Research.2022; 257: 126964. CrossRef
MuLan-Methyl—multiple transformer-based language models for accurate DNA methylation prediction
Wenhuan Zeng, Anupam Gautam, Daniel H Huson
GigaScience.2022;[Epub] CrossRef
Evolution of Complex Regulation for Cell-Cycle Control
Samuel H. A. von der Dunk, Berend Snel, Paulien Hogeweg, Laurence Hurst
Genome Biology and Evolution.2022;[Epub] CrossRef
Advanced biotechnology using methyltransferase and its applications in bacteria: a mini review
Jun Ren, Hyang-Mi Lee, JunHao Shen, Dokyun Na
Biotechnology Letters.2022; 44(1): 33. CrossRef
Phase-variable Type I methyltransferase M.NgoAV from Neisseria gonorrhoeae FA1090 regulates phasevarion expression and gonococcal phenotype
Monika Adamczyk-Poplawska, Pawel Bacal, Agnieszka Mrozek, Natalia Matczynska, Andrzej Piekarowicz, Agnieszka Kwiatek
Frontiers in Microbiology.2022;[Epub] CrossRef
DNA Methyltransferases: From Evolution to Clinical Applications
Victor M. Del Castillo Falconi, Karla Torres-Arciga, Genaro Matus-Ortega, José Díaz-Chávez, Luis A. Herrera
International Journal of Molecular Sciences.2022; 23(16): 8994. CrossRef
Analyzing Modern Biomolecules: The Revolution of Nucleic-Acid Sequencing – Review
Gabriel Dorado, Sergio Gálvez, Teresa E. Rosales, Víctor F. Vásquez, Pilar Hernández
Biomolecules.2021; 11(8): 1111. CrossRef
Omics-based microbiome analysis in microbial ecology: from sequences to information
Jang-Cheon Cho
Journal of Microbiology.2021; 59(3): 229. CrossRef
RecA gene genetic diversity and its regulatory element analysis: The case of Vibrio cholerae
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Antarctic tundra soil metagenome as useful natural resources of cold-active lignocelluolytic enzymes: Han Na Oh , Doyoung Park , Hoon Je Seong , Dockyu Kim , Woo Jun Sul; J. Microbiol. 2019;57(10):865-873. Published online September 30, 2019; DOI: https://doi.org/10.1007/s12275-019-9217-1

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Abstract

Lignocellulose composed of complex carbohydrates and aromatic heteropolymers is one of the principal materials for the production of renewable biofuels. Lignocellulose-degrading genes from cold-adapted bacteria have a potential to increase the productivity of biological treatment of lignocellulose biomass by providing a broad range of treatment temperatures. Antarctic soil metagenomes allow to access novel genes encoding for the cold-active lignocellulose-degrading enzymes, for biotechnological and industrial applications. Here, we investigated the metagenome targeting cold-adapted microbes in Antarctic organic matter-rich soil (KS 2-1) to mine lignolytic and celluloytic enzymes by performing single molecule, real-time metagenomic (SMRT) sequencing. In the assembled Antarctic metagenomic contigs with relative long reads, we found that 162 (1.42%) of total 11,436 genes were annotated as carbohydrate-active enzymes (CAZy). Actinobacteria, the dominant phylum in this soil’s metagenome, possessed most of candidates of lignocellulose catabolic genes like glycoside hydrolase families (GH13, GH26, and GH5) and auxiliary activity families (AA7 and AA3). The predicted lignocellulose degradation pathways in Antarctic soil metagenome showed synergistic role of various CAZyme harboring bacterial genera including Streptomyces, Streptosporangium, and Amycolatopsis. From phylogenetic relationships with cellular and environmental enzymes, several genes having potential for participating in overall lignocellulose degradation were also found. The results indicated the presence of lignocellulose-degrading bacteria in Antarctic tundra soil and the potential benefits of the lignocelluolytic enzymes as candidates for cold-active enzymes which will be used for the future biofuel-production industry.

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Cecal microbiome divergence of broiler chickens by sex and body weight: Kyu-Chan Lee , Dong Yong Kil , Woo Jun Sul; J. Microbiol. 2017;55(12):939-945. Published online December 7, 2017; DOI: https://doi.org/10.1007/s12275-017-7202-0

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Abstract

The divergence of gut bacterial community on broiler chickens has been reported as potentially possible keys to enhancing nutrient absorption, immune systems, and increasing poultry health and performance. Thus, we compared cecal bacterial communities and functional predictions by sex and body weight regarding the association between cecal microbiota and chicken growth performance. In this study, a total of 12 male and 12 female 1-day-old broiler chickens were raised for 35 days in 2 separate cages. Chickens were divided into 3 subgroups depending on body weight (low, medium, and high) by each sex. We compared chicken cecal microbiota compositions and its predictive functions by sex and body weight difference. We found that bacterial 16S rRNA genes were classified as 3 major phyla (Bacteroidetes, Firmicutes, and Proteobacteria), accounting for > 98% of the total bacterial community. The profiling of different bacterial taxa and predictive metagenome functions derived from 16S rRNA genes were performed over chicken sex and bodyweight. Male chickens were related to the enrichment of Bacteroides while female chickens were to the enrichment of Clostridium and Shigella. Male chickens with high body weight were associated with the enrichment of Faecalibacterium and Shuttleworthia. Carbohydrate and lipid metabolisms were suggested as candidate functions for weight gain in the males. This suggests that the variation of cecal bacterial communities and their functions by sex and body weight may be associated with the differences in the growth potentials of broiler chickens.

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Woo Jun Sul	1 Article
Host‑Associated Microbiome Woo Jun Sul J. Microbiol. 2024;62(3):135-136. Published online May 6, 2024 DOI: https://doi.org/10.1007/s12275-024-00135-y 136 View 7 Download

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