- Characterization of a Salmonella Enteritidis bacteriophage showing broad lytic activity against Gram-negative enteric bacteria
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Shukho Kim , Sung-Hun Kim , Marzia Rahman , Jungmin Kim
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J. Microbiol. 2018;56(12):917-925. Published online October 25, 2018
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DOI: https://doi.org/10.1007/s12275-018-8310-1
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In this study, we sought to isolate Salmonella Enteritidis-specific
lytic bacteriophages (phages), and we found a lytic phage
that could lyse not only S. Enteritidis but also other Gramnegative
foodborne pathogens. This lytic phage, SS3e, could
lyse almost all tested Salmonella enterica serovars as well as
other enteric pathogenic bacteria including Escherichia coli,
Shigella sonnei, Enterobacter cloacae, and Serratia marcescens.
This SS3e phage has an icosahedral head and a long tail, indicating
belong to the Siphoviridae. The genome was 40,793
base pairs, containing 58 theoretically determined open reading
frames (ORFs). Among the 58 ORFs, ORF49, and ORF25
showed high sequence similarity with tail spike protein and
lysozyme-like protein of Salmonella phage SE2, respectively,
which are critical proteins recognizing and lysing host bacteria.
Unlike SE2 phage whose host restricted to Salmonella
enterica serovars Enteritidis and Gallinarum, SS3e showed
broader host specificity against Gram-negative enteric bacteria;
thus, it could be a promising candidate for the phage
utilization against various Gram-negative bacterial infection
including foodborne pathogens.
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Citations
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Optimizing phage therapy for carbapenem-resistant
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Antimicrobial Agents and Chemotherapy.2025;[Epub] CrossRef - Therapeutic potential of novel phages with antibiotic combinations against ESBL-producing and carbapenem-resistant Escherichia Coli
Md Shamsuzzaman, Shukho Kim, Jungmin Kim
Journal of Global Antimicrobial Resistance.2025; 43: 86. CrossRef - In vitro, genomic characterization and pre-clinical evaluation of a new thermostable lytic Obolenskvirus phage formulated as a hydrogel against carbapenem-resistant Acinetobacter baumannii
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- Inverse PCR for subtyping of Acinetobacter baumannii carrying ISAba1
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Shukho Kim , Yun-Ju Park , Jungmin Kim
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J. Microbiol. 2016;54(5):376-380. Published online April 20, 2016
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DOI: https://doi.org/10.1007/s12275-016-6038-3
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344
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3
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Abstract
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Acinetobacter baumannii has been prevalent in nosocomial
infections, often causing outbreaks in intensive care units.
ISAba1 is an insertion sequence that has been identified only
in A. baumannii and its copy number varies among strains.
It has been reported that ISAba1 provides a promoter for
blaOXA-51-like, blaOXA-23-like, and blaampC, which are associated
with the resistance of A. baumannii to carbapenems and cephalosporins.
The main purpose of this study was to develop
a novel inverse PCR method capable of typing A. baumannii
strains. The method involves three major steps: cutting of genomic
DNA with a restriction enzyme, ligation, and PCR.
In the first step, bacterial genomic DNA was digested with
DpnI. In the second step, the digested genomic DNAs were
ligated to form intramolecular circular DNAs. In the last step,
the ligated circular DNAs were amplified by PCR with primers
specific for ISAba1 and the amplified PCR products
were electrophoresed. Twenty-two clinical isolates of A. baumannii
were used for the evaluation of the inverse PCR (iPCR)
typing method. Dendrogram analysis revealed two major clusters,
similar to pulsed-field gel electrophoresis (PFGE) results.
Three ISAba1-associated genes – blaampC, blaOXA-66-like, and
csuD – were amplified and detected in the clinical isolates.
This novel iPCR typing method is comparable to PFGE in its
ability to discriminate A. baumannii strains, and is a promising
molecular epidemiological tool for investigating A.
baumannii carrying ISAba1.
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Citations
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J. Microbiol. 2011;49(6):994-999. Published online December 28, 2011
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DOI: https://doi.org/10.1007/s12275-011-1512-4
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214
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Abstract
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Recently, lytic bacteriophages (phages) have been focused on treating bacterial infectious diseases. We investigated the protective efficacy of a novel Pseudomonas aeruginosa phage, PA1Ø, in normal and neutropenic mice. A lethal dose of P. aeruginosa PAO1 was administered via the intraperitoneal route and a single
dose of PA1Ø with different multiplicities of infection (MOI) was treated into infected mice. Immunocompetent mice infected with P. aeruginosa PAO1 were successfully protected by PA1Ø of 1 MOI, 10 MOI or 100 MOI with 80% to 100% survival rate. No viable bacteria were found in organ samples after 48 h of the phage treatment. Phage clearing patterns were different in the presence or absence of host bacteria but PA1Ø disappeared from all organs after 72 h except spleen in the presence of host bacteria. On the contrary, PA1Ø treatment could not protect neutropenic mice infected with P. aeruginosa PAO1 even though could extend their lives for a short time. In in vitro phage-neutrophil bactericidal test, a stronger bactericidal effect was observed in phage-neutrophil co-treatment than in phage single treatment without neutrophils, suggesting phage-neutrophil co-work is essential for the efficient killing of bacteria in the mouse model. In conclusion, PA1Ø can be possibly utilized in future phage therapy endeavors since it exhibited strong protective effects against virulent P. aeruginosa infection.
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Migma Dorji Tamang , Shukho Kim , Sung-Min Kim , Hyun-Hee Kong , Jungmin Kim
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J. Microbiol. 2011;49(5):841-846. Published online November 9, 2011
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DOI: https://doi.org/10.1007/s12275-011-1063-8
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190
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Abstract
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Acinetobacter baumannii is virtually avirulent for healthy people but maintains a high virulence among critically ill patients or immuno-compromised individuals. The ability of A. baumannii to adhere to cells and persist on surfaces as biofilms could be central to its pathogenicity. In the present study, we compared the virulence of the A. baumannii 1656-2 clinical strain, which is able to form a thick biofilm, with the virulence of the A. baumannii type strain (ATCC 19606T). Acanthamoeba castellanii, a single-celled organism, was used as the host model system to study the virulence of A. baumannii. Compared to A. baumannii ATCC 19606T, A. baumannii 1656-2 exhibited a higher ability to adhere and invade A. castellanii cells and had a higher killing rate of A. castellanii cells. Furthermore, co-incubation of the amoeba cells and the cell-free supernatant of A. baumannii resulted in the cell death of the amoebae. Heat inactivation or proteinase K treatment of the supernatant did not eliminate its cytotoxicity, suggesting heat stable non-protein factors are responsible for its cytotoxicity to A. castellanii cells. In conclusion, this study for the first time has revealed the capacity of the A. baumannii strain and/or its metabolic products to induce cytotoxicity in A. castellanii cells.
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Jungmin Kim , Shukho Kim , Hee Woo Lee , Sung Min Kim , Sung Yong Seol
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J. Microbiol. 2011;49(3):512-515. Published online June 30, 2011
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DOI: https://doi.org/10.1007/s12275-011-1221-z
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Abstract
PDF
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Multidrug-resistant clinical isolates of Providencia carrying blaPER-1 and blaVIM-2 were evaluated for the abilities to form biofilm and high biofilm forming capacity was demonstrated in them. Minimum biofilm inhibitory concentrations (MBICs), minimum biofilm eradication concentrations (MBECs), and minimum inhibitory concentrations (MICs) for imipenem and meropenem were also determined. In all tested strains, the MBICs were higher than the MICs for both drugs. Interestingly, the MBICs and the MBEC50 for meropenem were lower than those for imipenem in the isolates producing high amounts of biofilm, suggesting that meropenem is superior to imipenem in the growth inhibition and eradication of biofilm forming Providencia strains.
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Shukho Kim , Mi Jin Kim , Hee Young Kang , Sung Yong Seol , Dong Taek Cho , Jungmin Kim
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DOI: https://doi.org/10.1007/s12275-010-0299-z
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248
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21
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Abstract
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This study introduces a simple colorimetric method which can measure the antimicrobial susceptibility of bacteria in biofilms using trimethyl tetrazolium chloride (TTC) as an indicator of viable bacteria. The new method was utilized for the evaluation of antibiotic susceptibility of Escherichia coli, Klebsiella pneumoniae, and Staphylococcus aureus biofilms.
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Sung Hun Kim , Shukho Kim , Sung Guen Chun , Mi-Sun Park , Jeong Hyun Park , Bok-Kwon Lee
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DOI: https://doi.org/10.1007/s12275-007-0197-1
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228
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14
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Abstract
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We analyzed 66 Salmonella Enteritidis isolates in 2002. Thirty isolates were obtained from human patients with diarrhea, and 36 were obtained from chickens. A total of ten phage types (PT) were identified in the human and chicken isolates. PT1 and PT21 were the predominant PTs in both the human (20% and 13%) and chicken (17% and 47%) isolates. Twelve pulsotypes were generated by PFGE and divided into two major groups. Most of the PFGE types were categorized into cluster group 1. Eighteen chicken isolates in cluster group 1 showed high-level genetic association (>95%) with 22 other human isolates. Additionally, six chicken
isolates from cluster group 2 showed fairly high-level genetic association (>95%) with the other seven human isolates. The highest levels of genetic association in humans and chickens were seen with A5-PT21 (11 isolates), A2-PT1 (7 isolates), and B1-PT4 (6 isolates). The Pulsed-Field Gel Electrophoresis (PFGE) and phage typing provided conclusive evidence that human Salmonella infections are attributable to the consumption of contaminated chicken.
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- Genomic Relationship of Salmonella enterica Serovar Typhimurium DT104 Isolates from Korea and the United States
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Shukho Kim , Sung Guen Chun , Ok Young Lim , Mi Sun Park , Yeon Ho Kang , Yong Ho Park , Bok Kwon Lee
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J. Microbiol. 2004;42(1):14-19.
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DOI: https://doi.org/2007 [pii]
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Abstract
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Salmonella enterica serovar Typhimurium DT104 (Salmonella Typhimurium DT104 or DT104) hasbeen emerging as a common pathogen for human in Korea since 1997. In order to compare the genomic relationship and to search for the dominant strains in Korea, we conducted pulsed-field gel electrophoresis (PFGE) and IS200 fingerprinting of 25 epidemiological unrelated isolates from human and animals from Korea and cattle from America. Two Salmonella Typhimurium DT104 isolates from human in Korea and all 8 isolates from American cattle had indistinguishable patterns from the PFGE and IS200 fingerprinting but multidrug-resistant Salmonella Typhimurium isolates, including DT104, from Korean animals had diverse genetic patterns. The data suggest that a dominant DT104 strain might have circulated between Korean and American cattle and that it had a high level of clonality.
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