- Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
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Young Joon Oh , Joon Yong Kim , Seul Ki Lim , Min-Sung Kwon , Hak-Jong Choi
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J. Microbiol. 2021;59(5):460-466. Published online April 28, 2021
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DOI: https://doi.org/10.1007/s12275-021-0513-1
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 Abstract
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To date, all species in the genus Salicibibacter have been isolated
in Korean commercial kimchi. We aimed to describe
the taxonomic characteristics of two strains, NKC5-3T and
NKC21-4T, isolated from commercial kimchi collected from
various regions in the Republic of Korea. Cells of these strains
were rod-shaped, Gram-positive, aerobic, oxidase- and catalase-
positive, non-motile, halophilic, and alkalitolerant. Both
strains, unlike other species of the genus Salicibibacter, could
not grow without NaCl. Strains NKC5-3T and NKC21-4T
could tolerate up to 25.0% (w/v) NaCl (optimum 10%) and
grow at pH 7.0–10.0 (optimum 8.5) and 8.0–9.0 (optimum
8.5), respectively; they showed 97.1% 16S rRNA gene sequence
similarity to each other and were most closely related
to S. kimchii NKC1-1T (97.0% and 96.8% similarity, respectively).
The genome of strain NKC5-3T was nearly 4.6 Mb in
size, with 4,456 protein-coding sequences (CDSs), whereas
NKC21-4T genome was nearly 3.9 Mb in size, with 3,717 CDSs.
OrthoANI values between the novel strains and S. kimchii
NKC1-1T were far lower than the species demarcation threshold.
NKC5-3T and NKC21-4T clustered together to form
branches that were distinct from the other Salicibibacter species.
The major fatty acids in these strains were anteiso-C15:0
and anteiso-C17:0, and the predominant menaquinone was
menaquinone-7. The polar lipids of NKC5-3T included diphosphatidylglycerol
(DPG), phosphatidylglycerol (PG), and
five unidentified phospholipids (PL), and those of NKC21-4T
included DPG, PG, seven unidentified PLs, and an unidentified
lipid. Both isolates had DPG, which is the first case in
the genus Salicibibacter. The genomic G + C content of strains
NKC5-3T and NKC21-4T was 44.7 and 44.9 mol%, respectively.
Based on phenotypic, genomic, phylogenetic, and chemotaxonomic
analyses, strains NKC5-3T (= KACC 22040T
= DSM 111417T) and NKC21-4T (= KACC 22041T = DSM
111418T) represent two novel species of the genus Salicibibacter,
for which the names Salicibibacter cibarius sp. nov.
and Salicibibacter cibi sp. nov. are proposed.
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Citations
Citations to this article as recorded by  - Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef
- Lentibacillus cibarius sp. nov., isolated from kimchi, a Korean fermented food
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Young Joon Oh , Joon Yong Kim , Hee Eun Jo , Hyo Kyeong Park , Seul Ki Lim , Min-Sung Kwon , Hak-Jong Choi
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J. Microbiol. 2020;58(5):387-394. Published online April 11, 2020
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DOI: https://doi.org/10.1007/s12275-020-9507-7
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Abstract
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Two bacterial strains designated NKC220-2T and NKC851-2
were isolated from commercial kimchi from different areas
in Korea. The strains were Gram-positive, aerobic, oxidaseand
catalase-positive, rod-shaped, spore-forming, non-motile,
and halophilic bacteria. Both strains grew without NaCl,
unlike type species in the genus Lentibacillus. The optimal
pH for growth was 8.0, higher than that of the type species
in the genus Lentibacillus, although growth was observed at
pH 5.5–9.0. 16S rRNA gene sequence-based phylogenetic analysis
indicated that the two strains (99.3–99.9% similarity)
are grouped within the genus Lentibacillus and most closely
related to Lentibacillus juripiscarius IS40-3T (97.4–97.6% similarity)
isolated from fish sauce in Thailand. OrthoANI value
between two novel strains and Lentibacillus lipolyticus SSKP1-
9T (79.5–79.6% similarity) was far lower than the species demarcation
threshold. Comparative genomic analysis displayed
differences between the two strains as well as among other
strains belonging to Lentibacillus. Furthermore, each isolate
had strain-specific groups of orthologous genes based on pangenome
analysis. Genomic G + C contents of strains NKC-
220-2T and NKC851-2 were 41.9 and 42.2 mol%, respectively.
The strains contained meso-diaminopimelic acid in their
cell walls, and the major menaquinone was menaquinone-7.
Phosphatidylglycerol, diphosphatidylglycerol, and an unidentified
glycolipid, aminophospholipid, and phospholipid were
the major polar lipid components of both strains. The major
cellular fatty acids of the strains were anteiso-C15:0 and anteiso-
C17:0. Based on phenotypic, genomic, phylogenetic, and
chemotaxonomic features, strains NKC220-2T and NKC851-2
represent novel species of the genus Lentibacillus, for which
the name Lentibacillus cibarius sp. nov. is proposed. The type
strain is NKC220-2T (= KACC 21232T = JCM 33390T).
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Citations
Citations to this article as recorded by - Identification of Roseomonas xinghualingensis sp. nov. isolated from hospital air
Zhiming Kang, Wenjing Lei, Ji Pu, Lijun Zhao, Guowen Min, Yufeng Liu, Wenjuan Chang, Yuqian Gao, Kui Dong, Bin Sun
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Detection of the Microbial Composition of Some Commercial Fermented Liquid Products via Metagenomic Analysis
Cansu Çelik Doğan, Hafize Tuğba Yüksel Dolgun, Serkan İkiz, Şükrü Kırkan, Uğur Parın
Foods.2023; 12(19): 3538. CrossRef -
Lentibacillus daqui sp. nov., isolated from high-temperature Daqu, a starter for production of Chinese Jiang-flavour Baijiu
Yuan Liang, Zhen-Ming Lu, Wei Shi, Lin-Huan Wu, Li-Juan Chai, Xiao-Juan Zhang, Su-Yi Zhang, Song-Tao Wang, Cai-Hong Shen, Zheng-Hong Xu
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Occurrence of biogenic amines and their correlation with bacterial communities in the Ivorian traditional fermented fish adjuevan during the storage
Marina Ghislaine Abré, Clémentine Amenan Kouakou-Kouamé, Florent Kouadio N’guessan, Corinne Teyssier, Didier Montet
Folia Microbiologica.2023; 68(2): 257. CrossRef - Description of Corynebacterium poyangense sp. nov., isolated from the feces of the greater white-fronted geese (Anser albifrons)
Qian Liu, Guoying Fan, Kui Wu, Xiangning Bai, Xi Yang, Wentao Song, Shengen Chen, Yanwen Xiong, Haiying Chen
Journal of Microbiology.2022; 60(7): 668. CrossRef -
Parasphingorhabdus cellanae sp. nov., isolated from the gut of a Korean limpet, Cellana toreuma
Ji-Ho Yoo, Jeong Eun Han, June-Young Lee, Su-Won Jeong, Yun-Seok Jeong, Jae-Yun Lee, So-Yeon Lee, Hojun Sung, Euon Jung Tak, Hyun Sik Kim, Pil Soo Kim, Jee-Won Choi, Do-Yeon Kim, In Chul Jeong, Do-Hun Gim, Seo Min Kang, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov.
Wentao Zhu, Juan Zhou, Shan Lu, Jing Yang, Xin-He Lai, Dong Jin, Ji Pu, Yuyuan Huang, Liyun Liu, Zhenjun Li, Jianguo Xu
Journal of Microbiology.2022; 60(2): 137. CrossRef - The Methods of Digging for “Gold” within the Salt: Characterization of Halophilic Prokaryotes and Identification of Their Valuable Biological Products Using Sequencing and Genome Mining Tools
Jakub Lach, Paulina Jęcz, Dominik Strapagiel, Agnieszka Matera-Witkiewicz, Paweł Stączek
Genes.2021; 12(11): 1756. CrossRef - Lentibacillus saliphilus. sp. nov., a moderately halophilic bacterium isolated from a saltern in Korea
Yun Wang, Gang-Qiang Jiang, Hong-Ping Lin, Peng Sun, Hong-Yan Zhang, Dong-Mei Lu, Li-Yun Wang, Chang-Jin Kim, Shu-Kun Tang
Archives of Microbiology.2021; 203(2): 621. CrossRef - Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
Young Joon Oh, Joon Yong Kim, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2021; 59(5): 460. CrossRef - Flaviflexus ciconiae sp. nov., isolated from the faeces of the oriental stork, Ciconia boyciana
Jae-Yun Lee, Woorim Kang, Pil Soo Kim, So-Yeon Lee, Na-Ri Shin, Hojun Sung, June-Young Lee, Ji-Hyun Yun, Yun-Seok Jeong, Jeong Eun Han, Mi-Ja Jung, Dong-Wook Hyun, Hyun Sik Kim, Euon Jung Tak, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology.2020; 70(10): 5439. CrossRef - List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef
- Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi
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Young Joon Oh , Joon Yong Kim , Hyo Kyeong Park , Ja-Young Jang , Seul Ki Lim , Min-Sung Kwon , Hak-Jong Choi
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J. Microbiol. 2019;57(11):997-1002. Published online October 28, 2019
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DOI: https://doi.org/10.1007/s12275-019-9421-z
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94
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2
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3
Crossref
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Abstract
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A Gram-stain-positive, rod-shaped, alkalitolerant, and halophilic
bacterium–designated as strain NKC3-5T–was isolated
from kimchi that was collected from the Geumsan area
in the Republic of Korea. Cells of isolated strain NKC3-5T
were 0.5–0.7μm wide and 1.4–2.8 μm long. The strain
NKC3-5T could grow at up to 20.0% (w/v) NaCl (optimum
10%), pH 6.5–10.0 (optimum pH 9.0), and 25–40°C (optimum
35°C). The cells were able to reduce nitrate under aerobic
conditions, which is the first report in the genus Salicibibacter.
The genome size and genomic G + C content of
strain NKC3-5T were 3,754,174 bp and 45.9 mol%, respectively;
it contained 3,630 coding sequences, 16S rRNA genes
(six 16S, five 5S, and five 23S), and 59 tRNA genes. Phylogenetic
analysis based on 16S rRNA showed that strain NKC-
3-5T clustered with bacterium Salicibibacter kimchii NKC1-1T,
with a similarity of 96.2–97.6%, but formed a distinct branch
with other published species of the family Bacillaceae. In addition,
OrthoANI value between strain NKC3-5T and Salicibibacter
kimchii NKC1-1T was far lower than the species demarcation
threshold. Using functional genome annotation,
the result found that carbohydrate, amino acid, and vitamin
metabolism related genes were highly distributed in the genome
of strain NKC3-5T. Comparative genomic analysis revealed
that strain NKC3-5T had 716 pan-genome orthologous
groups (POGs), dominated with carbohydrate metabolism.
Phylogenomic analysis based on the concatenated core
POGs revealed that strain NKC3-5T was closely related to
Salicibibacter kimchii. The predominant polar lipids were
phosphatidylglycerol and two unidentified lipids. Anteiso-
C15:0, iso-C17:0, anteiso-C17:0, and iso-C15:0 were the major cellular
fatty acids, and menaquinone-7 was the major isoprenoid
quinone present in strain NKC3-5T. Cell wall peptidoglycan
analysis of strain NKC3-5T showed that meso-diaminopimelic
acid was the diagnostic diamino acid. The phenotypic,
genomic, phylogenetic, and chemotaxonomic properties
reveal that the strain represents a novel species of
the genus Salicibibacter, for which the name Salicibibacter
halophilus sp. nov. is proposed, with the type strain NKC3-5T
(= KACC 21230T = JCM 33437T).
-
Citations
Citations to this article as recorded by - Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
Young Joon Oh, Joon Yong Kim, Seul Ki Lim, Min-Sung Kwon, Hak-Jong Choi
Journal of Microbiology.2021; 59(5): 460. CrossRef - The Methods of Digging for “Gold” within the Salt: Characterization of Halophilic Prokaryotes and Identification of Their Valuable Biological Products Using Sequencing and Genome Mining Tools
Jakub Lach, Paulina Jęcz, Dominik Strapagiel, Agnieszka Matera-Witkiewicz, Paweł Stączek
Genes.2021; 12(11): 1756. CrossRef - List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef
- Rotavirus-mediated alteration of gut microbiota and its correlation with physiological characteristics in neonatal calves
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Ja-Young Jang , Suhee Kim , Min-Sung Kwon , Jieun Lee , Do-Hyeon Yu , Ru-Hui Song , Hak-Jong Choi , Jinho Park
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J. Microbiol. 2019;57(2):113-121. Published online November 19, 2018
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DOI: https://doi.org/10.1007/s12275-019-8549-1
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68
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32
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Abstract
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Diarrhea is a fatal disease to neonatal calves, and rotavirus is
the main pathogen associated with neonatal calf diarrhea.
Although previous studies have reported that the gut microbiota
is changed in calves during diarrhea, less is known
about whether rotavirus infection alters the structure of the
gut microbiota. Here, we characterized fecal microbial communities
and identified possible relationships between the
gut microbiota profiles and physiological parameters. Five
fecal specimens of rotavirus-infected calves from 1 to 30 days
after birth and five fecal specimens of age-matched healthy
calves were used for the microbial community analysis using
the Illumina MiSeq sequencer. Rotavirus infection was
associated with reduced rotavirus infection significantly reduced
the richness and diversity of the bacterial community.
Weighted unique fraction metric analysis exhibited significant
differences in community membership and structure between
healthy and rotavirus-infected calves. Based on relative abundance
analysis and linear discriminant analysis effect size, we
found that the representative genera from Lactobacillus, Subdoligranulum,
Blautia, and Bacteroides were closely related to
healthy calves, while the genera Escherichia and Clostridium
were closely affiliated to rotavirus-infected calves. Furthermore,
canonical correlation analysis and Pearson correlation
coefficient results revealed that the increased relative abundances
of Lactobacillus, Subdoligranulum, and Bacteroides
were correlated with normal levels of physiological characteristics
such as white blood cells, blood urea nitrogen, serum
amyloid protein A, and glucose concentration in serum. These
results
suggest that rotavirus infection alters the structure
of the gut microbiota, correlating changes in physiological
-
Citations
Citations to this article as recorded by - Detection of drug resistance in Escherichia coli from calves with diarrhea in the Tongliao region: an analysis of multidrug-resistant strains
Zi Wang, Miao Sun, Shuang Guo, Yongqiang Wang, Linghao Meng, Jinchuan Shi, Chao Geng, Dongxu Han, Xiaomeng Fu, Jiangdong Xue, Hongxia Ma, Kai Liu
Frontiers in Veterinary Science.2024;[Epub] CrossRef - Neonatal Calf Diarrhea and Gastrointestinal Microbiota: Etiologic Agents and Microbiota Manipulation for Treatment and Prevention of Diarrhea
Emma Jessop, Lynna Li, David L. Renaud, Adronie Verbrugghe, Jennifer Macnicol, Lisa Gamsjäger, Diego E. Gomez
Veterinary Sciences.2024; 11(3): 108. CrossRef - Dynamic Analysis of Stool Microbiota of Simmental Calves and Effects of Diarrhea on Their Gut Microbiota
Qianxun Wang, Mula Na, Shiyu Jia, Miao Sun, Song Gao, Shiwei Pan, Wu Dong, Yang Song, Jingfeng Yang
Biology.2024; 13(7): 520. CrossRef - Impact of Limosilactobacillus fermentum probiotic treatment on gut microbiota composition in sahiwal calves with rotavirus diarrhea: A 16S metagenomic analysis study”
Nadeem Murtaza, Muhammad Nawaz, Tahir Yaqub, Asim Khalid Mehmood
BMC Microbiology.2024;[Epub] CrossRef - Alterations of microbiota and metabolites in the feces of calves with diarrhea associated with rotavirus and coronavirus infections
Shengwei Cui, Shihui Guo, Qingmei Zhao, Yong Li, Yun Ma, Yongtao Yu
Frontiers in Microbiology.2023;[Epub] CrossRef - Neonatal Calf Diarrhea Is Associated with Decreased Bacterial Diversity and Altered Gut Microbiome Profiles
Wei Li, Xin Yi, Baoyun Wu, Xiang Li, Boping Ye, Ziqi Deng, Runa A, Sanlong Hu, Dongdong Li, Hao Wu, Zhenming Zhou
Fermentation.2023; 9(9): 827. CrossRef - Colonization and development of the gut microbiome in calves
Yufeng Du, Ya Gao, Mingyang Hu, Jinxiu Hou, Linhai Yang, Xianghuang Wang, Wenjuan Du, Jianxin Liu, Qingbiao Xu
Journal of Animal Science and Biotechnology.2023;[Epub] CrossRef -
Intestinal mucin-type
O
-glycans: the major players in the host-bacteria-rotavirus interactions
S.A. Raev, J.O. Amimo, L.J. Saif, A.N. Vlasova
Gut Microbes.2023;[Epub] CrossRef - Modulating gastrointestinal microbiota to alleviate diarrhea in calves
Wenjuan Du, Xianghuang Wang, Mingyang Hu, Jinxiu Hou, Yufeng Du, Wenjin Si, Linhai Yang, Le Xu, Qingbiao Xu
Frontiers in Microbiology.2023;[Epub] CrossRef - Pharmacotherapeutic justification of the hypertonic saline solution usage for the treatment of calves with diarrhea
V. Shaganenko, N. Kozii, R. Shaganenko, N. Avramenko, I. Rublenko, A. Yemelyanenko, O. Poroshynska
Naukovij vìsnik veterinarnoï medicini.2023; (2 (184)): 192. CrossRef - Analysis of Fecal Microbial Changes in Young Calves Following Bovine Rotavirus Infection
Seon-Ho Kim, Youyoung Choi, Michelle A. Miguel, Shin-Ja Lee, Sung-Sill Lee, Sang-Suk Lee
Veterinary Sciences.2023; 10(8): 496. CrossRef - Host innate immune responses and microbiome profile of neonatal calves challenged with Cryptosporidium parvum and the effect of bovine colostrum supplementation
Lisa Gamsjäger, Karina M. Cirone, Steffany Schluessel, Mackenzie Campsall, Aydin Herik, Priyoshi Lahiri, Daniel Young, Antoine Dufour, Panagiotis Sapountzis, Saria Otani, Diego E. Gomez, M. Claire Windeyer, Eduardo R. Cobo
Frontiers in Cellular and Infection Microbiology.2023;[Epub] CrossRef - Microbiota do not restrict rotavirus infection of colon
Arash Hellysaz, Johan Nordgren, Magdalena Neijd, Magalí Martí, Lennart Svensson, Marie Hagbom, Stacey Schultz-Cherry
Journal of Virology.2023;[Epub] CrossRef - Therapeutic Approach Targeting Gut Microbiome in Gastrointestinal Infectious Diseases
Ziying Han, Yiyang Min, Ke Pang, Dong Wu
International Journal of Molecular Sciences.2023; 24(21): 15654. CrossRef - Integrated 16S rDNA Gene Sequencing and Untargeted Metabolomics Analyses to Investigate the Gut Microbial Composition and Plasma Metabolic Phenotype in Calves With Dampness-Heat Diarrhea
Zunxiang Yan, Kang Zhang, Kai Zhang, Guibo Wang, Lei Wang, Jingyan Zhang, Zhengying Qiu, Zhiting Guo, Xiaoping Song, Jianxi Li
Frontiers in Veterinary Science.2022;[Epub] CrossRef - IHNV Infection Induces Strong Mucosal Immunity and Changes of Microbiota in Trout Intestine
Zhenyu Huang, Mengting Zhan, Gaofeng Cheng, Ruiqi Lin, Xue Zhai, Haiou Zheng, Qingchao Wang, Yongyao Yu, Zhen Xu
Viruses.2022; 14(8): 1838. CrossRef - Effects of Anemoside B4 on Diarrhea Incidence, Serum Indices, and Fecal Microbial of Suckling Calves
Meng Lu, Fengming Hu, Yanliang Bi, Tao Ma, Qiyu Diao, Linshu Jiang, Yan Tu
Frontiers in Veterinary Science.2022;[Epub] CrossRef - Gut microbiome alterations in ICU patients with enteral nutrition-related diarrhea
Weiwei Ni, Xinwei Jiao, Huihuang Zou, Mengjuan Jing, Ming Xia, Shichao Zhu, Liming Li
Frontiers in Microbiology.2022;[Epub] CrossRef - Fecal microbiota dynamics and its relationship to diarrhea and health in dairy calves
Hongwei Chen, Yalu Liu, Kailang Huang, Bin Yang, Yuanyuan Zhang, Zhongtang Yu, Jiakun Wang
Journal of Animal Science and Biotechnology.2022;[Epub] CrossRef - Efficacy of Microencapsulated Probiotic as Adjunct Therapy on Resolution of Diarrhea, Copper-Zinc Homeostasis, Immunoglobulins, and Inflammatory Markers in Serum of Spontaneous Rotavirus-Infected Diarrhoetic Calves
Jitendra Singh Gandhar, Ujjwal Kumar De, Anju Kala, Yashpal Singh Malik, Supriya Yadav, Babul Rudra Paul, Shivendra Kumar Dixit, Shubhankar Sircar, Pallab Chaudhary, Manas Kumar Patra, Gyanendra Kumar Gaur
Probiotics and Antimicrobial Proteins.2022; 14(6): 1054. CrossRef - Interaction with mammalian enteric viruses alters outer membrane vesicle production and content by commensal bacteria
Chanel A. Mosby, Sutonuka Bhar, Matthew B. Phillips, Mariola J. Edelmann, Melissa K. Jones
Journal of Extracellular Vesicles.2022;[Epub] CrossRef - Alteration of the gut microbiota in post-weaned calves following
recovery from bovine coronavirus-mediated diarrhea
Min-Sung Kwon, Hee Eun Jo, Jieun Lee, Kyoung-Seong Choi, Dohyeon Yu, Yeon-su Oh, Jinho Park, Hak-Jong Choi
Journal of Animal Science and Technology.2021; 63(1): 125. CrossRef - Single-cell sequencing of rotavirus-infected intestinal epithelium reveals cell-type specific epithelial repair and tuft cell infection
Carolyn Bomidi, Matthew Robertson, Cristian Coarfa, Mary K. Estes, Sarah E. Blutt
Proceedings of the National Academy of Sciences.2021;[Epub] CrossRef - Spontaneous remission of infantile spasms following rotavirus gastroenteritis
Xiang-Dong Zeng, Wen-Guang Hu
Neurological Sciences.2021; 42(1): 253. CrossRef - Effect of a Multispecies Probiotic Mixture on the Growth and Incidence of Diarrhea, Immune Function, and Fecal Microbiota of Pre-weaning Dairy Calves
Yanyan Wu, Lili Wang, Ruiqing Luo, Hongli Chen, Cunxi Nie, Junli Niu, Cheng Chen, Yongping Xu, Xiaoyu Li, Wenjun Zhang
Frontiers in Microbiology.2021;[Epub] CrossRef - Differences in the fecal microbiota of dairy calves reared with differing sources of milk and levels of maternal contact
Annabelle Beaver, Charisse Petersen, Daniel M. Weary, B. Brett Finlay, Marina A.G. von Keyserlingk
JDS Communications.2021; 2(4): 200. CrossRef - Short communication: Comparison of the fecal bacterial communities in diarrheic and nondiarrheic dairy calves from multiple farms in southeastern Pennsylvania
Meagan Hennessy, Nagaraju Indugu, Bonnie Vecchiarelli, Laurel Redding, Joseph Bender, Christa Pappalardo, Miranda Leibstein, John Toth, Darko Stefanovski, Ananya Katepalli, Satvik Garapati, Dipti Pitta
Journal of Dairy Science.2021; 104(6): 7225. CrossRef - Detection of Infectious Agents Causing Neonatal Calf Diarrhea on Two Large Dairy Farms in Yangxin County, Shandong Province, China
Xiaojuan Wei, Weiwei Wang, Zhen Dong, Fusheng Cheng, Xuzheng Zhou, Bing Li, Jiyu Zhang
Frontiers in Veterinary Science.2021;[Epub] CrossRef - Intestinal Microbiota—A Promising Target for Antiviral Therapy?
Mengling Yang, Yang Yang, Qingnan He, Ping Zhu, Mengqi Liu, Jiahao Xu, Mingyi Zhao
Frontiers in Immunology.2021;[Epub] CrossRef - The Interaction Between Viruses and Intestinal Microbiota: A Review
Zhiming Lv, Dongwei Xiong, Jichao Shi, Miao Long, Zeliang Chen
Current Microbiology.2021; 78(10): 3597. CrossRef - Effect of Heat-Inactivated Compound Probiotics on Growth Performance, Plasma Biochemical Indices, and Cecal Microbiome in Yellow-Feathered Broilers
Cui Zhu, Li Gong, Kaiyong Huang, Fangjun Li, Diqing Tong, Huihua Zhang
Frontiers in Microbiology.2020;[Epub] CrossRef - The Commensal Microbiota and Viral Infection: A Comprehensive Review
Na Li, Wen-Tao Ma, Ming Pang, Qin-Lei Fan, Jin-Lian Hua
Frontiers in Immunology.2019;[Epub] CrossRef
- Virgibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi
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Young Joon Oh , Ja-Young Jang , Seul Ki Lim , Min-Sung Kwon , Jieun Lee , NamHee Kim , Mi-Young Shin , Hyo Kyeong Park , Myung-Ji Seo , Hak-Jong Choi
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J. Microbiol. 2017;55(12):933-938. Published online December 7, 2017
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DOI: https://doi.org/10.1007/s12275-017-7386-3
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76
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Abstract
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A Gram-stain-positive, halophilic, rod-shaped, non-motile,
spore forming bacterium, strain NKC1-2T, was isolated from
kimchi, a Korean fermented food. Comparative analysis based
on 16S rRNA gene sequence demonstrated that the isolated
strain was a species of the genus Virgibacillus. Strain NKC1-
2T exhibited high level of 16S rRNA gene sequence similarity
with the type strains of Virgibacillus xinjiangensis SL6-1T
(96.9%), V. sediminis YIM kkny3T (96.8%), and V. salarius
SA-Vb1T (96.7%). The isolate grew at pH 6.5–10.0 (optimum,
pH 8.5–9.0), 0.0–25.0% (w/v) NaCl (optimum, 10–15% NaCl),
and 15–50°C (optimum, 37°C). The major menaquinone in
the strain was menaquinone-7, and the main peptidoglycan
of the strain was meso-diaminopimelic acid. The predominant
fatty acids of the strain were iso-C14:0, anteisio-C15:0, iso-
C15:0, and iso-C16:0 (other components were < 10.0%). The
polar lipids consisted of diphosphatidylglycerol and phosphatidylglycerol.
The genomic DNA G + C content of NKC1-2T
was 42.5 mol%. On the basis of these findings, strain NKC1-
2T is proposed as a novel species in the genus Virgibacillus,
for which the name Virgibacillus kimchii sp. nov. is proposed
(=KACC 19404T =JCM 32284T). The type strain of Virgibacillus
kimchii is NKC1-2T.
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Citations
Citations to this article as recorded by - Virgibacillus saliphilus sp. nov. and Virgibacillus salidurans sp. nov., isolated from kimchi
Young Joon Oh, Joon Yong Kim, Min-Sung Kwon, Sulhee Lee, Sang-Pil Choi, Hak-Jong Choi
Journal of Microbiology.2025; 63(1): e:2501001. CrossRef - Bioprospecting for moderately halophilic eubacteria for potential biotechnological applications from Sambhar Lake, Rajasthan, India
Saloni Singh, Ayushi Goyal, Kakoli Dutt
The Applied Biology & Chemistry Journal.2024; : 12. CrossRef - Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
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- Gracilibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi§
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Young Joon Oh , Hae-Won Lee , Seul Ki Lim , Min-Sung Kwon , Jieun Lee , Ja-Young Jang , Hae Woong Park , Young-Do Nam , Myung-Ji Seo , Hak-Jong Choi
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J. Microbiol. 2016;54(9):588-593. Published online August 31, 2016
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DOI: https://doi.org/10.1007/s12275-016-6349-4
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Abstract
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A novel halophilic bacterium, strain K7T, was isolated from
kimchi, a traditional Korean fermented food. The strain is
Gram-positive, motile, and produces terminal endospores.
The isolate is facultative aerobic and grows at salinities of
0.0–25.0% (w/v) NaCl (optimum 10–15% NaCl), pH 5.5–8.5
(optimum pH 7.0–7.5), and 15–42°C (optimum 37°C). The
predominant isoprenoid quinone in the strain is menaquinone-
7 and the peptidoglycan of the strain is meso-diaminopimelic
acid. The major fatty acids of the strain are anteisio-
C15:0, iso-C15:0, and, C16:0 (other components were < 10.0%),
while the major polar lipids are diphosphatidylglycerol, phosphatidylglycerol,
phosphatidylcholine, and three unidentified
lipids. A phylogenetic analysis of 16S rRNA gene sequence
similarity showed that the isolated strain was a cluster of the
genus Gracilibacillus. High levels of gene sequence similarity
were observed between strain K7T and Gracilibacillus orientalis
XH-63T (96.5%), and between the present strain and
Gracilibacillus xinjiangensis (96.5%). The DNA G+C content
of this strain is 37.7 mol%. Based on these findings, strain
K7T is proposed as a novel species: Gracilibacillus kimchii sp.
nov. The type strain is K7T (KACC 18669T; JCM 31344T).
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Citations
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Antonie van Leeuwenhoek.2020; 113(7): 1049. CrossRef - Lentibacillus cibarius sp. nov., isolated from kimchi, a Korean fermented food
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Journal of Microbiology.2020; 58(5): 387. CrossRef - Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi
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