- Jejubacter calystegiae gen. nov., sp. nov., moderately halophilic, a new member of the family Enterobacteriaceae, isolated from beach morning glory
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Lingmin Jiang , Dexin Wang , Jung-Sook Lee , Dae-Hyuk Kim , Jae Cheol Jeong , Cha Young Kim , Suk Weon Kim , Jiyoung Lee
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J. Microbiol. 2020;58(5):357-366. Published online March 27, 2020
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DOI: https://doi.org/10.1007/s12275-020-9294-1
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 Abstract
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Strain KSNA2T, a Gram-negative, moderately halophilic, facultatively
anaerobic, motile, rod-shaped bacterium, was isolated
from the surface-sterilized stem tissue of a beach morning
glory (Calystegia soldanella) plant in Chuja Island, Jejudo,
Republic of Korea. Phylogenetic analysis based on 16S
rRNA gene and whole-genome sequences revealed that strain
KSNA2T formed a distinct lineage within the family Enterobacteriaceae,
with the highest 16S rRNA gene sequence similarity
to Izhakiella australiensis KCTC 72143T (96.2%) and
Izhakiella capsodis KCTC 72142T (96.0%), exhibited 95.5–
95.9% similarity to other genera in the family Enterobacteriaceae
and Erwiniaceae. Conserved signature indels analysis
elucidated that strain KSNA2T was delimited into family
Enterobacteriaceae. KSNA2T genome comprises a circular
chromosome of 5,182,800 bp with 56.1% G + C content. Digital
DNA-DNA relatedness levels between strain KSNA2T
and 18 closely related species were 19.3 to 21.1%. Average
nucleotide identity values were between 72.0 and 76.7%.
Growth of strain KSNA2T was observed at 4 to 45°C (optimum,
25°C) and pH 5.0 to 12.0 (optimum, pH 7.0) in the
presence of 0 to 11% (w/v) NaCl (optimum, 0–7%). The major
cellular fatty acids (> 10%) were C16:0 followed by summed
feature 8 (C18:1 ω7c and/or C18:1 ω6c), summed feature
3 (C16:1 ω7c and/or C16:1 ω6c), C17:0 cyclo, and C14:0. The major
isoprenoid quinone was ubiquinone-8 (Q-8). With combined
phylogenetic, genomic, phenotypic, and chemotaxonomic
features, strain KSNA2T represents a novel species of
a new genus in the family Enterobacteriaceae, for which the
name Jejubacter calystegiae gen. nov., sp. nov. is proposed.
The type strain is KSNA2T (= KCTC 72234T = CCTCC AB
2019098T).
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Citations
Citations to this article as recorded by  - Pseudoxanthomonas sp. JBR18, a halotolerant endophytic bacterium, improves the salt tolerance of Arabidopsis seedlings
Yuxin Peng, Lingmin Jiang, Doeun Jeon, Donghyun Cho, Youngmin Kim, Cha Young Kim, Ju Huck Lee, Jiyoung Lee
Plant Physiology and Biochemistry.2024; 207: 108415. CrossRef - Two microbes assisting Miscanthus floridulus in remediating multi-metal(loid)s-contaminated soil
Yunhua Xiao, Jingjing Ma, Rui Chen, Sha Xiang, Bo Yang, Liang Chen, Jun Fang, Shuming Liu
Environmental Science and Pollution Research.2024; 31(20): 28922. CrossRef - Improving plant salt tolerance through Algoriphagus halophytocola sp. nov., isolated from the halophyte Salicornia europaea
Yuxin Peng, Dong Hyun Cho, Zalfa Humaira, Yu Lim Park, Ki Hyun Kim, Cha Young Kim, Jiyoung Lee
Frontiers in Microbiology.2024;[Epub] CrossRef - Detection of human pathogenic bacteria in rectal DNA samples from Zalophus californianus in the Gulf of California, Mexico
Francesco Cicala, David Ramírez-Delgado, Ricardo Gómez-Reyes, Marcel Martínez-Porchas, Jorge Rojas-Vargas, Liliana Pardo-López, Alexei F. Licea-Navarro
Scientific Reports.2022;[Epub] CrossRef - Genome Insights into the Novel Species Jejubacter calystegiae, a Plant Growth-Promoting Bacterium in Saline Conditions
Ling Min Jiang, Yong Jae Lee, Ho Le Han, Myoung Hui Lee, Jae Cheol Jeong, Cha Young Kim, Suk Weon Kim, Ji Young Lee
Diversity.2021; 13(1): 24. CrossRef -
Pedobacter endophyticus sp. nov., an endophytic bacterium isolated from Carex pumila
Yuxin Peng, Lingmin Jiang, Jiyoon Seo, Zhun Li, Hanna Choe, Jae Cheol Jeong, Suk Weon Kim, Young-Min Kim, Cha Young Kim, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
The Changing Face of the Family
Enterobacteriaceae
(Order: “
Enterobacterales
”): New Members, Taxonomic Issues, Geographic Expansion, and New Diseases and Disease Syndromes
J. Michael Janda, Sharon L. Abbott
Clinical Microbiology Reviews.2021;[Epub] CrossRef
- Saccharibacillus brassicae sp. nov., an endophytic bacterium isolated from kimchi cabbage (Brassica rapa subsp. pekinensis) seeds
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Lingmin Jiang , Chan Ju Lim , Song-Gun Kim , Jae Cheol Jeong , Cha Young Kim , Dae-Hyuk Kim , Suk Weon Kim , Jiyoung Lee
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J. Microbiol. 2020;58(1):24-29. Published online November 25, 2019
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DOI: https://doi.org/10.1007/s12275-020-9346-6
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65
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11
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Abstract
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Strain ATSA2T was isolated from surface-sterilized kimchi
cabbage (Brassica rapa subsp. pekinensis) seeds and represents
a novel bacterium based on the polyphasic taxonomic
approach. A phylogenetic analysis based on 16S rRNA gene
sequences showed that strain ATSA2T formed a lineage within
genus Saccharibacillus and was most closely to Saccharibacillus
deserti WLG055T (98.1%) and Saccharibacillus qingshengii
H6T (97.9%). The whole-genome of ATSA2T comprised
a 5,619,468 bp of circular chromosome with 58.4% G + C
content. The DNA-DNA relatedness values between strain
ATSA2T and its closely related type strains S. deserti WLJ055T
and S. qingshengii H6T were 26.0% and 24.0%, respectively.
Multiple gene clusters associated with plant growth promotion
activities (stress response, nitrogen and phosphorus metabolism,
and auxin biosynthesis) were annotated in the
genome. Strain ATSA2T was Gram-positive, endospore-forming,
facultatively anaerobic, and rod-shaped. It grew at
15–37°C (optimum 25°C), pH 6.0–10.0 (optimum pH 8.0),
and in the presence of 0–5% (w/v) NaCl (optimum 1%). The
major cellular fatty acids (> 10%) of strain ATSA2T were anteiso-
C15:0 and C16:0. MK-7 was the major isoprenoid quinone.
The major polar lipids present were diphosphatidylglycerol,
phosphatidylglycerol, and three unknown glycolipids. Based
on its phylogenetic, genomic, phenotypic, and chemotaxonomic
features, strain ATSA2T is proposed to represent a
novel species of genus Saccharibacillus, for which the name is
Saccharibacillus brassicae sp. nov. The type strain is ATSA2T
(KCTC 43072T = CCTCC AB 2019223T).
-
Citations
Citations to this article as recorded by - Improving plant salt tolerance through Algoriphagus halophytocola sp. nov., isolated from the halophyte Salicornia europaea
Yuxin Peng, Dong Hyun Cho, Zalfa Humaira, Yu Lim Park, Ki Hyun Kim, Cha Young Kim, Jiyoung Lee
Frontiers in Microbiology.2024;[Epub] CrossRef - Dasania phycosphaerae sp. nov., isolated from phytoplankton sample from the south coast of the Republic of Korea
Yue Jiang, Yong Guan, Sungmo Kang, Mi-Kyung Lee, Ki-Hyun Kim, Zhun Li
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Genome insights into the plant growth-promoting bacterium Saccharibacillus brassicae ATSA2T
Lingmin Jiang, Jiyoon Seo, Yuxin Peng, Doeun Jeon, Soon Ju Park, Cha Young Kim, Pyoung Il Kim, Chul Hong Kim, Ju Huck Lee, Jiyoung Lee
AMB Express.2023;[Epub] CrossRef - Emticicia fluvialis sp. nov., a potential hormone-degrading bacterium isolated from Nakdong River, Republic of Korea
Hyun-Sun Baek, Yong Guan, Min-Ju Kim, Yue Jiang, Mi-Kyung Lee, Ki-Hyun Kim, Jaeyoon Lee, Yuna Shin, Yoon-Ho Kang, Zhun Li
Antonie van Leeuwenhoek.2023; 116(12): 1317. CrossRef - Identification and genomic analysis of Pseudosulfitobacter koreense sp. nov. isolated from toxin-producing dinoflagellate Alexandrium pacificum
Yue Jiang, Zhun Li
Archives of Microbiology.2023;[Epub] CrossRef -
Gymnodinialimonas phycosphaerae sp. nov., a phycosphere bacterium isolated from Karlodinium veneficum
Yuxin Peng, Lingmin Jiang, Yue Jiang, Jiyoon Seo, Doeun Jeon, Young-Min Kim, Zhun Li, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef -
Flavobacterium endoglycinae sp. nov., an endophytic bacterium isolated from soybean (Glycine max L. cv. Gwangan) stems
Jiyoon Seo, Yuxin Peng, Lingmin Jiang, Sang-Beom Lee, Rae-Dong Jeong, Soon Ju Park, Cha Young Kim, Man-Soo Choi, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Gymnodinialimonas ceratoperidinii gen. nov., sp. nov., isolated from rare marine dinoflagellate Ceratoperidinium margalefii
Yue Jiang, Yuxin Peng, Hyeon Ho Shin, Hyun Jung Kim, Ki-Hyun Kim, Lingmin Jiang, Jiyoung Lee, Zhun Li
Archives of Microbiology.2022;[Epub] CrossRef -
Flagellatimonas centrodinii gen. nov., sp. nov., a novel member of the family Nevskiaceae isolated from toxin-producing dinoflagellate Centrodinium punctatum
Yue Jiang, Lingmin Jiang, Yuxin Peng, Ki-Hyun Kim, Hyeon Ho Shin, Young-Min Kim, Jiyoung Lee, Zhun Li
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Pedobacter endophyticus sp. nov., an endophytic bacterium isolated from Carex pumila
Yuxin Peng, Lingmin Jiang, Jiyoon Seo, Zhun Li, Hanna Choe, Jae Cheol Jeong, Suk Weon Kim, Young-Min Kim, Cha Young Kim, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Neobacillus endophyticus sp. nov., an endophytic bacterium isolated from Selaginella involvens roots
Lingmin Jiang, Myoung Hui Lee, Jae Cheol Jeong, Dae-Hyuk Kim, Cha Young Kim, Suk Weon Kim, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2019;[Epub] CrossRef
- Cohnella abietis sp. nov., isolated from Korean fir (Abies koreana) rhizospheric soil of Halla mountain
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Lingmin Jiang , Sophea Pheng , Keun Chul Lee , Se Won Kang , Jae Cheol Jeong , Cha Young Kim , Hyeong Cheol Park , Dae-Hyuk Kim , Suk Weon Kim , Song-Gun Kim , Jiyoung Lee
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J. Microbiol. 2019;57(11):953-958. Published online August 28, 2019
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DOI: https://doi.org/10.1007/s12275-019-9136-1
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69
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12
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Abstract
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A strictly aerobic, motile, endospore-forming, rod-shaped
bacterium, designated HS21T, was isolated from rhizospheric
soil of the Korean fir tree (Abies koreana) from Halla mountain
on Jeju island, Korea. Growth of strain HS21T was observed
at pH 6.0–8.0 (optimum: pH 7.0), 0–2% (w/v) NaCl
and 4–30°C (optimum: 25°C). A comparative analysis of 16S
rRNA gene sequences showed that strain HS21T was most
closely related to Cohnella luojiensis HY-22RT (97.6%), followed
by C. lupini RLAHU4BT (97.4%) and C. collisoli NKM-
5T (97.2%). The genome of strain HS21T comprised a circular
chromosome of 7,059,027 bp with 44.8% G + C content. The
DNA-DNA relatedness values between strain HS21T and C.
luojiensis HY-22RT and C. lupini RLAHU4BT were 18.1% and
13.8%, respectively. The major cellular fatty acids (> 5%) of
the isolate were anteiso-C15:0, iso-C16:0, C16:0, and iso-C15:0. The
polar lipids present were diphosphatidylglycerol, phosphatidylglycerol,
phosphatidylethanolamine, lysylphosphatidylglycerol,
and three unidentified aminophospholipids. Based
on its phenotypic, phylogenetic, genomic, and chemotaxonomic
properties, strain HS21T represents a novel species of
the genus Cohnella, for which the name Cohnella abietis sp.
nov. is proposed. The type strain is HS21T (= KCTC 43028T
= CCTCC AB 2019010T).
-
Citations
Citations to this article as recorded by -
Flavobacterium capsici sp. nov., isolated from the rhizospheric soils of bell pepper (Capsicum annuum L.)
Dong Hyun Cho, Yuxin Peng, Zalfa Humaira, Yu Lim Park, Hyun Jung Kim, Rae-Dong Jeong, Cha Young Kim, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Description and genomic characterization of Cohnella caldifontis sp. nov., isolated from hot springs in Yunnan province, south-west China
Ming-Xian Xiang, Cui-Ping Miao, Dian-Yan Zhang, Juan Wang, Yi-Qing Li, Min Yin, ShuKun Tang
Antonie van Leeuwenhoek.2024;[Epub] CrossRef -
Deeply branching
Bacillota
species exhibit atypical Gram-negative staining
Jessica K. Choi, Saroj Poudel, Nathan Yee, Jennifer L. Goff, Beile Gao
Microbiology Spectrum.2024;[Epub] CrossRef - Sphingomonas abietis sp. nov., an Endophytic Bacterium Isolated from Korean Fir
Lingmin Jiang, Hanna Choe, Yuxin Peng, Doeun Jeon, Donghyun Cho, Yue Jiang, Ju Huck Lee, Cha Young Kim, Jiyoung Lee
Journal of Microbiology and Biotechnology.2023; 33(10): 1292. CrossRef - Pan-Genome Analyses of the Genus Cohnella and Proposal of the Novel Species Cohnella silvisoli sp. nov., Isolated from Forest Soil
Chunling Wang, Lutian Mao, Gegen Bao, Honghui Zhu
Microorganisms.2023; 11(11): 2726. CrossRef -
Flavobacterium litorale sp. nov., isolated from red alga
Neak Muhammad, Ho Le Han, Yong-Jae Lee, Jaeho Ko, Tra T. H. Nguyen, Song-Gun Kim
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Cohnella herbarum sp. nov., isolated from wild grass fermentation broth
Miyoung Won, Shin Ae Lee, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Vibrio ostreae sp. nov., a novel gut bacterium isolated from a Yellow Sea oyster
Neak Muhammad, Tra T.H. Nguyen, Yong-Jae Lee, Jaeho Ko, Forbes Avila, Song-Gun Kim
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Isolation of Saccharibacillus WB17 strain from wheat bran phyllosphere and genomic insight into the cellulolytic and hemicellulolytic complex of the Saccharibacillus genus
Ludovic Besaury, Mathilde Bocquart, Caroline Rémond
Brazilian Journal of Microbiology.2022; 53(4): 1829. CrossRef -
Cohnella terricola sp. nov., isolated from soil
Jiyoun Kim, Geeta Chhetri, Inhyup Kim, Minchung Kang, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Pedobacter endophyticus sp. nov., an endophytic bacterium isolated from Carex pumila
Yuxin Peng, Lingmin Jiang, Jiyoon Seo, Zhun Li, Hanna Choe, Jae Cheol Jeong, Suk Weon Kim, Young-Min Kim, Cha Young Kim, Jiyoung Lee
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef -
Cohnella fermenti sp. nov., isolated from a fermentation process
Shih-Yao Lin, Wen-Ming Chen, Asif Hameed, Guan-Hua Huang, Mei-Hua Hung, Chiu-Chung Young
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(4): 2602. CrossRef
- MINIREVIEW] Toxin-producing Cyanobacteria in Freshwater: A Review of the Problems, Impact on Drinking Water Safety, and Efforts for Protecting Public Health
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Melissa Y. Cheung , Song Liang , Jiyoung Lee
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J. Microbiol. 2013;51(1):1-10. Published online March 2, 2013
-
DOI: https://doi.org/10.1007/s12275-013-2549-3
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Abstract
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Cyanobacteria have adapted to survive in a variety of environments and have been found globally. Toxin-producing cyanobacterial harmful algal blooms (CHABs) have been increasing in frequency worldwide and pose a threat to drinking and recreational water. In this study, the prevalence, impact of CHABs and mitigation efforts were reviewed, focusing on the Lake Erie region and Ohio’s inland lakes that have been impacted heavily as an example so that the findings can be transferrable to other parts of the world that face the similar problems due to the CHABs in their freshwater environments. This paper provides a basic introduction to CHABs and their toxins as well as an overview of public health implications including exposure routes, health effects, and drinking water issues, algal bloom advisory practices in Ohio, toxin measurements results in Ohio public water supplies, and mitigation efforts.
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