- Description of Luteibacter aegosomatis sp. nov., Luteibacter aegosomaticola sp. nov., and Luteibacter aegosomatissinici sp. nov. isolated from the Intestines of Aegosoma sinicum Larvae
-
Hae-In Joe , Jee-Won Choi , June-Young Lee , Hojun Sung , Su-Won Jeong , Yun-Seok Jeong , Jae-Yun Lee , Jin-Woo Bae
-
J. Microbiol. 2023;61(6):603-613. Published online May 5, 2023
-
DOI: https://doi.org/10.1007/s12275-023-00051-7
-
-
96
View
-
0
Download
-
3
Web of Science
-
2
Crossref
-
 Abstract
-
Three novel bacterial strains, 321T,
335T,
and 353T,
were isolated from the intestines of Aegosoma sinicum larvae collected
from Paju-Si, South Korea. The strains were Gram-negative, obligate aerobe and had rod-shaped cells with a single flagellum.
The three strains belonged to the genus Luteibacter in the family Rhodanobacteraceae and shared < 99.2% similarity
in their 16S rRNA gene sequence and < 83.56% similarity in thier whole genome sequence. Strains 321T,
335T,
and 353T
formed a monophyletic clade with Luteibacter yeojuensis KACC 11405T,
L. anthropi KACC 17855T,
and L. rhizovicinus
KACC 12830T,
with sequence similarities of 98.77–98.91%, 98.44–98.58%, and 97.88–98.02%, respectively. Further
genomic analyses, including the construction of the Up-to-date Bacterial Core Gene (UBCG) tree and assessment of other
genome-related indices, indicated that these strains were novel species belonging to the genus Luteibacter. All three strains
contained ubiquinone Q8 as their major isoprenoid quinone and iso-C15:0 and summed feature 9 (
C16:0 10-methyl and/or
iso-C17:1 ω9c) as their major cellular fatty acids. Phosphatidylethanolamine and diphosphatidylglycerol were the major polar
lipids in all the strains. The genomic DNA G + C contents of strains 321T,
335T,
and 353T
were 66.0, 64.5, and 64.5 mol%,
respectively. Based on multiphasic classification, strains 321T,
335T,
and 353T
were classified into the genus Luteibacter
as the type strains of novel species, for which the names Luteibacter aegosomatis sp. nov., Luteibacter aegosomaticola sp.
nov., and Luteibacter aegosomatissinici sp. nov. are proposed, respectively.
-
Citations
Citations to this article as recorded by  - Luteibacter sahnii sp. nov., A Novel Yellow-Colored Xanthomonadin Pigment Producing Probiotic Bacterium from Healthy Rice Seed Microbiome
Gagandeep Jaiswal, Rekha Rana, Praveen Kumar Nayak, Rekha Chouhan, Sumit G. Gandhi, Hitendra K. Patel, Prabhu B. Patil
Current Microbiology.2024;[Epub] CrossRef - Validation List no. 215. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef
- Description of Deefgea piscis sp. nov., and Deefgea tanakiae sp. nov., isolated from the gut of Korean indigenous fish
-
Do-Hun Gim , So-Yeon Lee , Jeong Eun Han , Jae-Yun Lee , Seo Min Kang , Jin-Woo Bae
-
J. Microbiol. 2022;60(11):1061-1069. Published online September 1, 2022
-
DOI: https://doi.org/10.1007/s12275-022-2250-5
-
-
92
View
-
0
Download
-
5
Web of Science
-
6
Crossref
-
Abstract
-
Three novel strains, (D17T, D13, and D25T) isolated from the
gut of the Korean dark sleeper (Odontobutis platycephala),
Kumgang fat minnow (Rhynchocypris kumgangensis), and
the Korean oily bitterling (Tanakia koreensis) were identified
as two novel species. Strains D17T and D13 showed the highest
similarities in 16S rRNA gene and complete genome sequences
to Deefgea rivuli WB 3.4-79T (98.0% and 97.9%, respectively,
of 16S rRNA gene sequence similarity, 77.8% and 77.7%, respectively,
of orthologous average nucleotide identity, Ortho-
ANI, and 21.9% and 21.9%, respectively, of digital DNA-DNA
hybridization, dDDH). Strain D17T showed the highest similarities
in 16S rRNA gene and complete genome sequences to
D13 (99.9% of 16S rRNA gene sequence similarity, 91.8% of
OrthoANI, and 45.1% of dDDH); therefore, strains D17T and
D13 were assigned as the same species. Strain D25T showed the
highest similarities in 16S rRNA gene and complete genome
sequences to D. chitinilytica Nsw-4T (98.2% of 16S rRNA gene
sequence similarity, 82.4% of OrthoANI, and 25.1% of dDDH).
Strains D17T and D13 were Gram-stain-negative, facultative
anaerobes, rod-shaped, non-motile, and non-flagellated. Strain
D25T was Gram-stain-negative, facultative anaerobe, rodshaped,
and motile by a single polar flagellum. These strains
had C16:0 and summed feature 3 (C16:1 ω7c and/or C16:1 ω6c) as
the major cellular fatty acids and possessed Q-8 as a major
respiratory ubiquinone. All three strains contained phosphatidylethanolamine
and phosphatidylglycerol as the major polar
lipids. Based on polyphasic taxonomic data, strains D17T, D13,
and D25T represent two novel species of the genus Deefgea.
We propose the name Deefgea piscis sp. nov. for strains D17T
(= KCTC 82958T = JCM 34941T) and D13 (= KCTC 92368),
and Deefgea tanakiae sp. nov. for strain D25T (= KCTC 82959T
= JCM 34942T).
-
Citations
Citations to this article as recorded by - Systematic Literature Review Identifying Core Genera in the Gut Microbiome of Rainbow Trout (Oncorhynchus mykiss) and Species‐level Microbial Community Analysis Using Long‐Read Amplicon Sequencing
Mio Takeuchi, Kazuhiro Sugahara
Aquaculture, Fish and Fisheries.2025;[Epub] CrossRef -
Fecal metagenomic and metabolomic analyses reveal non-invasive biomarkers of
Flavobacterium psychrophilum
infection in ayu (
Plecoglossus altivelis
)
Mio Takeuchi, Erina Fujiwara-Nagata, Kyohei Kuroda, Kenji Sakata, Takashi Narihiro, Jun Kikuchi, Katherine McMahon
mSphere.2024;[Epub] CrossRef - Congregibacter variabilis sp. nov. and Congregibacter brevis sp. nov. Within the OM60/NOR5 Clade, Isolated from Seawater, and Emended Description of the Genus Congregibacter
Hyeonsu Tak, Miri S. Park, Hyerim Cho, Yeonjung Lim, Jang-Cheon Cho
Journal of Microbiology.2024; 62(9): 739. CrossRef - An update on novel taxa and revised taxonomic status of bacteria isolated from aquatic host species described in 2022–2023
Claire R. Burbick, Sara D. Lawhon, Brittany Bukouras, Giovanna Lazzerini, Erik Munson, Romney M. Humphries
Journal of Clinical Microbiology.2024;[Epub] CrossRef - Validation List no. 212. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef - Functional conservation of specialized ribosomes bearing genome-encoded variant rRNAs in Vibrio species
Younkyung Choi, Eunkyoung Shin, Minho Lee, Ji-Hyun Yeom, Kangseok Lee, Bashir Sajo Mienda
PLOS ONE.2023; 18(12): e0289072. CrossRef
- Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead)
-
Seomin Kang , Jae-Yun Lee , Jeong Eun Han , Yun-Seok Jeong , Do-Hun Gim , Jin-Woo Bae
-
J. Microbiol. 2022;60(9):890-898. Published online June 22, 2022
-
DOI: https://doi.org/10.1007/s12275-022-2075-2
-
-
99
View
-
0
Download
-
9
Web of Science
-
9
Crossref
-
Abstract
-
Two novel bacterial strains, KSM-R2A25T and KSM-R2A30T,
were isolated from intestines of Cyclina sinensis (corb shell)
and Channa argus (northern snakehead), respectively. Both
specimens were collected in Korea. The strains were Gramstain-
negative, non-motile, and strictly aerobic. According
to phylogenetic analyses based on 16S rRNA gene sequences,
strains belonged to the genus Flavobacterium within the family
Flavobacteriaceae. 16S rRNA gene sequences of strains KSMR2A25T
and KSM-R2A30T were closely related to Flavobacterium
cucumis DSM 18830T and Flavobacterium aquaticum
JC164T with sequence similarities of 97.77% and 98.54%, respectively.
Further genomic analyses including reconstruction
of the UBCG tree and overall genome-related indices suggested
them as novel species of the genus Flavobacterium.
Both strains contained menaquinone with six isoprene units
(MK-6) as a major isoprenoid quinone and iso-C15:1 G, iso-
C15:0, and iso-C16:0 as major cellular fatty acids. The major polar
lipid in both strains was phosphatidylethanolamine. The
genomic G + C contents of strains KSM-R2A25T and KSMR2A30T
were 31.7 and 31.9%, respectively. Based on the polyphasic
taxonomic study presented here, strains KSM-R2A25T
and KSM-R2A30T represent novel species of the genus Flavobacterium,
for which the names Flavobacterium cyclinae sp.
nov and Flavobacterium channae sp. nov are proposed. The
type strains of F. cyclinae sp. nov and F. channae sp. nov
are KSM-R2A25T (= KCTC 82978T = JCM 34997T) and KSMR2A30T
(= KCTC 82979T = JCM 34998T), respectively.
-
Citations
Citations to this article as recorded by - Flavobacterium rivulicola sp. nov., Isolated from a Freshwater Stream
Sumin Kim, Miri S. Park, Ilnam Kang, Jang-Cheon Cho
Current Microbiology.2024;[Epub] CrossRef - Comprehensive genome analysis of five novel flavobacteria: Flavobacterium piscisymbiosum sp. nov., Flavobacterium pisciphilum sp. nov., Flavobacterium flavipigmentatum sp. nov., Flavobacterium lipolyticum sp. nov. and Flavobacterium cupriresistens sp. nov
Izzet Burcin Saticioglu, Hilal Ay, Soner Altun, Nihed Ajmi, Enes Said Gunduz, Huban Gocmen, Muhammed Duman
Systematic and Applied Microbiology.2024; 47(4): 126518. CrossRef - The first report of submandibular lymph node infection with Flavobacterium ceti in a horse and its complete genome sequence
Seung-Ho Ryu, Beomsoon Jang, Byung-Sun Kim, Kun Taek Park
Microbial Pathogenesis.2024; 197: 107096. CrossRef - Rhodobacteraceae are Prevalent and Ecologically Crucial Bacterial Members in Marine Biofloc Aquaculture
Meora Rajeev, Jang-Cheon Cho
Journal of Microbiology.2024; 62(11): 985. CrossRef - Congregibacter variabilis sp. nov. and Congregibacter brevis sp. nov. Within the OM60/NOR5 Clade, Isolated from Seawater, and Emended Description of the Genus Congregibacter
Hyeonsu Tak, Miri S. Park, Hyerim Cho, Yeonjung Lim, Jang-Cheon Cho
Journal of Microbiology.2024; 62(9): 739. CrossRef - An update on novel taxa and revised taxonomic status of bacteria isolated from aquatic host species described in 2022–2023
Claire R. Burbick, Sara D. Lawhon, Brittany Bukouras, Giovanna Lazzerini, Erik Munson, Romney M. Humphries
Journal of Clinical Microbiology.2024;[Epub] CrossRef - Transcriptomic insights into the immune response of the intestine to Aeromonas veronii infection in northern snakehead (Channa argus)
Peng Sun, Di Zhang, Na Li, Xiao-Fei Li, Yi-Han Ma, Hui Li, Ye Tian, Tao Wang, Shahrood Ahmed Siddiquid, Wu-wen Sun, Lei Zhang, Xiao-Feng Shan, Chun-Feng Wang, Ai-Dong Qian, Dong-Xing Zhang
Ecotoxicology and Environmental Safety.2023; 255: 114825. CrossRef - Ten Novel Species Belonging to the Genus Flavobacterium, Isolated from Freshwater Environments: F. praedii sp. nov., F. marginilacus sp. nov., F. aestivum sp. nov., F. flavigenum sp. nov., F. luteolum sp. nov., F. gelatinilyticum sp. nov., F. aquiphilum s
Hyunyoung Jo, Miri S. Park, Yeonjung Lim, Ilnam Kang, Jang-Cheon Cho
Journal of Microbiology.2023; 61(5): 495. CrossRef - Validation List no. 209. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2023;[Epub] CrossRef
- Description of Polaribacter batillariae sp. nov., Polaribacter cellanae sp. nov., and Polaribacter pectinis sp. nov., novel bacteria isolated from the gut of three types of South Korean shellfish
-
Su-Won Jeong , Jeong Eun Han , June-Young Lee , Ji-Ho Yoo , Do-Yeon Kim , In Chul Jeong , Jee-Won Choi , Yun-Seok Jeong , Jae-Yun Lee , So-Yeon Lee , Euon Jung Tak , Hojun Sung , Hyun Sik Kim , Pil Soo Kim , Dong-Wook Hyun , Jin-Woo Bae
-
J. Microbiol. 2022;60(6):576-584. Published online April 18, 2022
-
DOI: https://doi.org/10.1007/s12275-022-1604-3
-
-
88
View
-
0
Download
-
7
Web of Science
-
7
Crossref
-
Abstract
-
Three aerobic, Gram-negative, and rod-shaped bacterial strains,
designated strains G4M1T, SM13T, and L12M9T, were isolated
from the gut of Batillaria multiformis, Cellana toreuma, and
Patinopecten yessoensis collected from the Yellow Sea in South
Korea. All the strains grew optimally at 25°C, in the presence
of 2% (w/v) NaCl, and at pH 7. These three strains, which
belonged to the genus Polaribacter in the family Flavobacteriaceae,
shared < 98.8% in 16S rRNA gene sequence and < 86.68%
in whole-genome sequence with each other. Compared with
the type strains of Polaribacter, isolates showed the highest
sequence similarity to P. haliotis KCTC 52418T (< 98.68%),
followed by P. litorisediminis KCTC 52500T (< 98.13%). All
the strains contained MK-6 as their predominant menaquinone
and iso-C15:0 as their major fatty acid. Moreover, all the
strains had phosphatidylethanolamine as their polar lipid
component. In addition, strain G4M1T had two unidentified
lipids and three unidentified aminolipids, strain SM13T had
three unidentified lipids and three unidentified aminolipids,
and strain L12M9T had three unidentified lipids and one unidentified
aminolipid. The DNA G + C contents of strains
G4M1T, SM13T, and L12M9T were 31.0, 30.4, and 29.7 mol%,
respectively. Based on phenotypic, phylogenetic, chemotaxonomic,
and genotypic findings, strains G4M1T (= KCTC 82388T
= DSM 112372T), SM13T (= KCTC 82389T = DSM 112373T),
and L12M9T (= KCTC 62751T = DSM 112374T) were classified
into the genus Polaribacter as the type strains of novel
species, for which the names Polaribacter batillariae sp. nov.,
Polaribacter cellanae sp. nov., and Polaribacter pectinis sp.
nov., respectively, have been proposed.
-
Citations
Citations to this article as recorded by - Polaribacter uvawellassae sp. nov., a Member of the Family Flavobacteriaceae Isolated from Mud Crab (Scylla serrata)
W. M. Lakshani Anuradha Wanasinghe, Wang Xin, Yuan Siliang, Dongru Qiu
Current Microbiology.2025;[Epub] CrossRef - Unique skin microbiome: insights to understanding bacterial symbionts in octopuses
Chelsea O. Bennice, Lauren E. Krausfeldt, W. Randy Brooks, Jose V. Lopez
Frontiers in Marine Science.2024;[Epub] CrossRef - An update on novel taxa and revised taxonomic status of bacteria isolated from aquatic host species described in 2022–2023
Claire R. Burbick, Sara D. Lawhon, Brittany Bukouras, Giovanna Lazzerini, Erik Munson, Romney M. Humphries
Journal of Clinical Microbiology.2024;[Epub] CrossRef -
Polaribacter ponticola sp. nov., isolated from seawater, reclassification of Polaribacter undariae as a later heterotypic synonym of Polaribacter sejongensis, and emended description of Polaribacter sejongensis Kim et al. 2013
Ju Hye Baek, Mahrukh Butt, Dong Min Han, Jeong Min Kim, Seohui Choi, Che Ok Jeon
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Rhodobacteraceae are Prevalent and Ecologically Crucial Bacterial Members in Marine Biofloc Aquaculture
Meora Rajeev, Jang-Cheon Cho
Journal of Microbiology.2024; 62(11): 985. CrossRef - Validation List no. 207. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, George Garrity
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Nocardioides palaemonis sp. nov. and Tessaracoccus palaemonis sp. nov., isolated from the gastrointestinal tract of lake prawn
Do-Yeon Kim, In-Chul Jeong, So-Yeon Lee, Yun-Seok Jeong, Jeong Eun Han, Euon Jung Tak, June-Young Lee, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef
- Description of Ornithinimicrobium ciconiae sp. nov., and Ornithinimicrobium avium sp. nov., isolated from the faeces of the endangered and near-threatened birds
-
So-Yeon Lee , Hojun Sung , Pil Soo Kim , Hyun Sik Kim , Jae-Yun Lee , June-Young Lee , Yun-Seok Jeong , Euon Jung Tak , Jeong Eun Han , Dong-Wook Hyun , Jin-Woo Bae
-
J. Microbiol. 2021;59(11):978-987. Published online September 27, 2021
-
DOI: https://doi.org/10.1007/s12275-021-1323-1
-
-
77
View
-
0
Download
-
6
Web of Science
-
7
Crossref
-
Abstract
-
Phenotypic and genomic analyses were performed to characterize
two novel species, H23M54T and AMA3305T, isolated
from the faeces of the Oriental stork (Ciconia boyciana) and
the cinereous vulture (Aegypius monachus), respectively. Strains
H23M54T and AMA3305T showed the highest similarities of
16S rRNA gene sequences and complete genome sequences
with Ornithinimicrobium cavernae CFH 30183T (98.5% of 16S
rRNA gene sequence similarity and 82.1% of average nucleotide
identity, ANI) and O. pekingense DSM 21552T (98.5% of
16S rRNA gene sequence similarity and 82.3% of ANI), respectively.
Both strains were Gram-stain-positive, obligate aerobes,
non-motile, non-spore-forming, and coccoid- and rodshaped.
Strain H23M54T grew optimally at 25–30°C and pH
8.0 and in the presence of 1.5–2% (wt/vol) NaCl, while strain
AMA3305T grew optimally at 30°C and pH 7.0 and in the presence
of 1–3% (wt/vol) NaCl. Both strains had iso-C15:0, iso-
C16:0, and summed feature 9 (iso-C17:1 ω9c and/or C16:0 10-
methyl) as major cellular fatty acids. MK-8 (H4) was identified
as the primary respiratory quinone in both strains. Strains
H23M54T and AMA3305T possessed diphosphatidylglycerol
and phosphatidylglycerol as major polar lipids. Moreover,
strains H23M54T and AMA3305T commonly contained ribose
and glucose as major sugars and L-ornithine, L-alanine,
glycine, and aspartic acid as major amino acids. The polyphasic
taxonomic data indicate that strains H23M54T and AMA3305T
represent novel species of the genus Ornithinimicrobium. We
propose the names Ornithinimicrobium ciconiae sp. nov. and
Ornithinimicrobium avium sp. nov. for strains H23M54T (= KCTC 49151T = JCM 33221T) and AMA3305T (= KCTC
49180T = JCM 32873T), respectively.
-
Citations
Citations to this article as recorded by - Molecular insight and antimicrobial potential of Actinomycetota isolated from Tanzania’s seagrass sediments
Lucy Dalusi Mbusi, Sylvester Leonard Lyantagaye, Thomas Jacob Lyimo
Biologia.2024; 80(1): 163. CrossRef - Bacterial community of ticks (Acari: Ixodidae) and mammals from Arauca, Colombian Orinoquia
Paula A. Ossa-López, Héctor E. Ramírez-Chaves, María Elena Álvarez López, Gabriel Jaime Castaño Villa, Fredy A. Rivera-Páez
International Journal for Parasitology: Parasites and Wildlife.2024; 24: 100943. CrossRef - Morphological and genomic characteristics of two novel actinomycetes, Ornithinimicrobium sufpigmenti sp. nov. and Ornithinimicrobium faecis sp. nov. isolated from bat faeces (Rousettus leschenaultia and Taphozous perforates)
Yuyuan Huang, Suping Zhang, Yuanmeihui Tao, Jing Yang, Shan Lu, Dong Jin, Ji Pu, Wenbo Luo, Han Zheng, Liyun Liu, Jia-fu Jiang, Jianguo Xu
Frontiers in Cellular and Infection Microbiology.2023;[Epub] CrossRef - Description of Ornithinimicrobium cryptoxanthini sp. nov., a Novel Actinomycete Producing β-cryptoxanthin Isolated from the Tongtian River Sediments
Yuyuan Huang, Yifan Jiao, Sihui Zhang, Yuanmeihui Tao, Suping Zhang, Dong Jin, Ji Pu, Liyun Liu, Jing Yang, Shan Lu
Journal of Microbiology.2023; 61(4): 379. CrossRef - An update on novel taxa and revised taxonomic status of bacteria isolated from non-domestic animals described in 2022
Claire R. Burbick, Sara D. Lawhon, Erik Munson, Elizabeth Thelen, Amanda Zapp, Anastasia Wilson, Romney M. Humphries
Journal of Clinical Microbiology.2023;[Epub] CrossRef - Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Lysobacter ciconiae sp. nov., and Lysobacter avium sp. nov., isolated from the faeces of an Oriental stork
So-Yeon Lee, Pil Soo Kim, Hojun Sung, Dong-Wook Hyun, Jin-Woo Bae
Journal of Microbiology.2022; 60(5): 469. CrossRef
- Pathogenomics of Streptococcus ilei sp. nov., a newly identified pathogen ubiquitous in human microbiome
-
Dong-Wook Hyun , Jae-Yun Lee , Min-Soo Kim , Na-Ri Shin , Tae Woong Whon , Kyung Hyun Kim , Pil Soo Kim , Euon Jung Tak , Mi-Ja Jung , June Young Lee , Hyun Sik Kim , Woorim Kang , Hojun Sung , Che Ok Jeon , Jin-Woo Bae
-
J. Microbiol. 2021;59(8):793-806.
-
DOI: https://doi.org/10.1007/s12275-021-1165-x
-
-
70
View
-
0
Download
-
9
Web of Science
-
9
Crossref
-
Abstract
-
Viridans group streptococci are a serious health concern because
most of these bacteria cause life-threatening infections,
especially in immunocompromised and hospitalized individuals.
We focused on two alpha-hemolytic Streptococcus
strains (I-G2 and I-P16) newly isolated from an ileostomy
effluent of a colorectal cancer patient. We examined their pathogenic
potential by investigating their prevalence in human
and assessing their pathogenicity in a mouse model. We also
predicted their virulence factors and pathogenic features by
using comparative genomic analysis and in vitro tests. Using
polyphasic and systematic approaches, we identified the isolates
as belonging to a novel Streptococcus species and designated
it as Streptococcus ilei. Metagenomic survey based on
taxonomic assignment of datasets from the Human Microbiome
Project revealed that S. ilei is present in most human
population and at various body sites but is especially abundant
in the oral cavity. Intraperitoneal injection of S. ilei was
lethal to otherwise healthy C57BL/6J mice. Pathogenomics
and in vitro assays revealed that S. ilei possesses a unique set
of virulence factors. In agreement with the in vivo and in vitro
data, which indicated that S. ilei strain I-G2 is more pathogenic
than strain I-P16, only the former displayed the streptococcal
group A antigen. We here newly identified S. ilei sp.
nov., and described its prevalence in human, virulence factors,
and pathogenicity. This will help to prevent S. ilei strain
misidentification in the future, and improve the understanding
and management of streptococcal infections.
-
Citations
Citations to this article as recorded by - Microbiota analysis of perimenopausal women experiencing recurrent vaginitis in conjunction with urinary tract infection
Yingying Bi, Yuezhu Wang, Wu Li, Yuhang Chen, Jinlong Qin, Huajun Zheng
BMC Microbiology.2025;[Epub] CrossRef - Characterization of blood microbial population in beef calves with clinical signs of sepsis using 16S rRNA gene sequencing
Giuliano Borriello, Flaminia Valentini, Sara Ferrini, Giorgia Di Muro, Giulia Cagnotti, Elena Grego, Angela Maria Catania, Maria Cristina Stella, Ugo Ala, Patrizia Nebbia, Antonio D’Angelo, Claudio Bellino, Ulrike Gertrud Munderloh
PLOS One.2025; 20(5): e0324469. CrossRef -
Molecular characterization of a novel putative pathogen,
Streptococcus nakanoensis
sp. nov., isolated from sputum culture
Takeaki Wajima, Takashi Sugawara, Emi Tanaka, Kei-ichi Uchiya, Justin R. Kaspar
Microbiology Spectrum.2024;[Epub] CrossRef -
Streptococcus raffinosi sp. nov., isolated from human breast milk samples
Ha Viet Nguyen, Anh Thi Van Trinh, Linh Nguyen Hai Bui, Anh Thi Lan Hoang, Quyen Thi Le Tran, Trung Thanh Trinh
International Journal of Systematic and Evolutionary Microbiology
.2024;[Epub] CrossRef - Description of Streptococcus dentalis sp. nov., Streptococcus gingivalis sp. nov., and Streptococcus lingualis sp. nov., Isolated from Human Oral Cavities
Beom-Jin Goo, Young-Sik Choi, Do-Hun Gim, Su-Won Jeong, Jee-Won Choi, Hojun Sung, Jae-Yun Lee, Jin-Woo Bae
Journal of Microbiology.2024; 62(11): 973. CrossRef - Valid and accepted novel bacterial taxa derived from human clinical specimens and taxonomic revisions published in 2022
Erik Munson, Arianna Carella, Karen C. Carroll, Romney M. Humphries
Journal of Clinical Microbiology.2023;[Epub] CrossRef - Valid publication of new names and new combinations effectively published outside the IJSEM. Validation List no. 203
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Modulation of gut microbiota and fecal metabolites by corn silk among high-fat diet-induced hypercholesterolemia mice
Lin Ding, Shan Ren, Yaoxin Song, Chuangang Zang, Yuchao Liu, Hao Guo, Wenqing Yang, Hong Guan, Jicheng Liu
Frontiers in Nutrition.2022;[Epub] CrossRef - Reclassification of Streptococcus ilei as a later heterotypic synonym of Streptococcus koreensis based on whole-genome sequence analysis
Sanjeet Kumar, Kanika Bansal, Santosh Kumar Sethi
Archives of Microbiology.2022;[Epub] CrossRef
- Description of Nocardioides piscis sp. nov., Sphingomonas piscis sp. nov. and Sphingomonas sinipercae sp. nov., isolated from the intestine of fish species Odontobutis interrupta (Korean spotted sleeper) and Siniperca scherzeri (leopard mandarin fish)
-
Dong-Wook Hyun , Yun-Seok Jeong , Jae-Yun Lee , Hojun Sung , So-Yeon Lee , Jee-Won Choi , Hyun Sik Kim , Pil Soo Kim , Jin-Woo Bae
-
J. Microbiol. 2021;59(6):552-562. Published online April 20, 2021
-
DOI: https://doi.org/10.1007/s12275-021-1036-5
-
-
69
View
-
0
Download
-
11
Web of Science
-
13
Crossref
-
Abstract
-
A polyphasic taxonomic approach was used to characterize
three novel bacterial strains, designated as HDW12AT, HDW-
15BT, and HDW15CT, isolated from the intestine of fish species
Odontobutis interrupta or Siniperca scherzeri. All isolates
were obligate aerobic, non-motile bacteria, and grew optimally
at 30°C. Phylogenetic analysis based on 16S rRNA sequences
revealed that strain HDW12AT was a member of the genus
Nocardioides, and closely related to Nocardioides allogilvus
CFH 30205T (98.9% sequence identities). Furthermore, strains
HDW15BT and HDW15CT were members of the genus Sphingomonas,
and closely related to Sphingomonas lutea JS5T and
Sphingomonas sediminicola Dae 20T (97.1% and 97.9% sequence
identities), respectively. Strain HDW12AT contained
MK-8 (H4), and strains HDW15BT and HDW15CT contained
Q-10 as the respiratory quinone. Major polar lipid components
of strain HDW12AT were diphosphatidylglycerol, phosphatidylglycerol,
and phosphatidylinositol, and those of strains
HDW15BT and HDW15CT were sphingoglycolipid, diphosphatidylglycerol,
phosphatidylglycerol, phosphatidylethanolamine,
and phosphatidylcholine. The G + C content of strains
HDW12AT, HDW15BT, and HDW15CT were 69.7, 63.3, and
65.5%, respectively. The results of phylogenetic, phenotypic,
chemotaxonomic, and genotypic analyses suggest that strain
HDW12AT represents a novel species within the genus Nocardioides,
and strains HDW15BT and HDW15CT represent
two novel species within the genus Sphingomonas. We propose
the names Nocardioides piscis for strain HDW12AT (= KACC
21336T = KCTC 49321T = JCM 33670T), Sphingomonas piscis
for strain HDW15BT (= KACC 21341T = KCTC 72588T = JCM
33738T), and Sphingomonas sinipercae for strain HDW15CT
(= KACC 21342T = KCTC 72589T = JCM 33739T).
-
Citations
Citations to this article as recorded by - Description of Streptococcus dentalis sp. nov., Streptococcus gingivalis sp. nov., and Streptococcus lingualis sp. nov., Isolated from Human Oral Cavities
Beom-Jin Goo, Young-Sik Choi, Do-Hun Gim, Su-Won Jeong, Jee-Won Choi, Hojun Sung, Jae-Yun Lee, Jin-Woo Bae
Journal of Microbiology.2024; 62(11): 973. CrossRef - Sphingomonas flavescens sp. nov., isolated from soil
Hyosun Lee, Dhiraj Kumar Chaudhary, Dong-Uk Kim
Archives of Microbiology.2024;[Epub] CrossRef - Nocardioides limicola sp. nov., an alkaliphilic alkane degrading bacterium isolated from oilfield alkali-saline soil
Lin Zhu, Biyue Yang, Wenjun Guo, Xinyu Hu, Shenkui Liu, Xiang Xiao, Wei Wei
Antonie van Leeuwenhoek.2024;[Epub] CrossRef - An update on novel taxa and revised taxonomic status of bacteria isolated from aquatic host species described in 2022–2023
Claire R. Burbick, Sara D. Lawhon, Brittany Bukouras, Giovanna Lazzerini, Erik Munson, Romney M. Humphries
Journal of Clinical Microbiology.2024;[Epub] CrossRef - The probiotic roles of Lactiplantibacillus plantarum E2 as a dietary supplement in growth promotion and disease resistance of juvenile large yellow croaker (Larimichthys crocea)
Ruizhe Liu, Shan Wang, Dongliang Huang, Yulu Huang, Tianliang He, Xinhua Chen
Aquaculture.2024; 578: 740082. CrossRef - Phylogeny, phenotypic characteristics and pathogenicity of Sphingomonas sp. and Erwinia persicina as bacterial causal agents of lettuce diseases in southwest of Iran
Vahid Keshavarz-Tohid, Somayeh Ebrahimi
Physiological and Molecular Plant Pathology.2023; 127: 102124. CrossRef - Description and genomic characterization of Nocardioides bruguierae sp. nov., isolated from Bruguiera gymnorhiza
Xiaohui Chen, Zhouqing Zheng, Feina Li, Xiao Ma, Feng Chen, Mingsheng Chen, Li Tuo
Systematic and Applied Microbiology.2023; 46(2): 126391. CrossRef -
Parasphingorhabdus cellanae sp. nov., isolated from the gut of a Korean limpet, Cellana toreuma
Ji-Ho Yoo, Jeong Eun Han, June-Young Lee, Su-Won Jeong, Yun-Seok Jeong, Jae-Yun Lee, So-Yeon Lee, Hojun Sung, Euon Jung Tak, Hyun Sik Kim, Pil Soo Kim, Jee-Won Choi, Do-Yeon Kim, In Chul Jeong, Do-Hun Gim, Seo Min Kang, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Nocardioides palaemonis sp. nov. and Tessaracoccus palaemonis sp. nov., isolated from the gastrointestinal tract of lake prawn
Do-Yeon Kim, In-Chul Jeong, So-Yeon Lee, Yun-Seok Jeong, Jeong Eun Han, Euon Jung Tak, June-Young Lee, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef - Intergenerational Transfer of Persistent Bacterial Communities in Female Nile Tilapia
Yousri Abdelhafiz, Jorge M. O. Fernandes, Claudio Donati, Massimo Pindo, Viswanath Kiron
Frontiers in Microbiology.2022;[Epub] CrossRef - Valid publication of new names and new combinations effectively published outside the IJSEM. Validation List no. 203
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology
.2022;[Epub] CrossRef -
Anaerostipes hominis sp. nov., a novel butyrate-producing bacteria isolated from faeces of a patient with Crohn's disease
Jae-Yun Lee, Woorim Kang, Na-Ri Shin, Dong-Wook Hyun, Pil Soo Kim, Hyun Sik Kim, June-Young Lee, Euon Jung Tak, Hojun Sung, Jin-Woo Bae
International Journal of Systematic and Evolutionary Microbiology
.2021;[Epub] CrossRef - Pathogenomics of Streptococcus ilei sp. nov., a newly identified pathogen ubiquitous in human microbiome
Dong-Wook Hyun, Jae-Yun Lee, Min-Soo Kim, Na-Ri Shin, Tae Woong Whon, Kyung Hyun Kim, Pil Soo Kim, Euon Jung Tak, Mi-Ja Jung, June Young Lee, Hyun Sik Kim, Woorim Kang, Hojun Sung, Che Ok Jeon, Jin-Woo Bae
Journal of Microbiology.2021; 59(8): 792. CrossRef
|
MSK
