Journal Articles
- Mycobacterium tuberculosis PE_PGRS45 (Rv2615c) Promotes Recombinant Mycobacteria Intracellular Survival via Regulation of Innate Immunity, and Inhibition of Cell Apoptosis
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Tao Xu , Chutong Wang , Minying Li , Jing Wei , Zixuan He , Zhongqing Qian , Xiaojing Wang , Hongtao Wang
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J. Microbiol. 2024;62(1):49-62. Published online February 9, 2024
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DOI: https://doi.org/10.1007/s12275-023-00101-0
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Abstract
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Tuberculosis (TB), a bacterial infectious disease caused by Mycobacterium tuberculosis (M. tuberculosis), is a significant
global public health problem. Mycobacterium tuberculosis expresses a unique family of PE_PGRS proteins that have been
implicated in pathogenesis. Despite numerous studies, the functions of most PE_PGRS proteins in the pathogenesis of
mycobacterium infections remain unclear. PE_PGRS45 (Rv2615c) is only found in pathogenic mycobacteria. In this study,
we successfully constructed a recombinant Mycobacterium smegmatis (M. smegmatis) strain which heterologously expresses
the PE_PGRS45 protein. We found that overexpression of this cell wall-associated protein enhanced bacterial viability under
stress in vitro and cell survival in macrophages. MS_PE_PGRS45 decreased the secretion of pro-inflammatory cytokines such
as IL-1β, IL-6, IL-12p40, and TNF-α. We also found that MS_PE_PGRS45 increased the expression of the anti-inflammatory
cytokine IL-10 and altered macrophage-mediated immune responses. Furthermore, PE_PGRS45 enhanced the survival rate
of M. smegmatis in macrophages by inhibiting cell apoptosis. Collectively, our findings show that PE_PGRS45 is a virulent
factor actively involved in the interaction with the host macrophage.
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- Evolution of the PE_PGRS Proteins of Mycobacteria: Are All Equal or Are Some More Equal than Others?
Bei Chen, Belmin Bajramović, Bastienne Vriesendorp, Herman Pieter Spaink
Biology.2025; 14(3): 247. CrossRef - Recent advances in research on Mycobacterium tuberculosis virulence factors and their role in pathogenesis
Ming-Rui Sun, Jia-Yin Xing, Xiao-Tian Li, Ren Fang, Yang Zhang, Zhao-Li Li, Ning-Ning Song
Journal of Microbiology, Immunology and Infection.2025;[Epub] CrossRef - Rv2741 Promotes Mycobacterium Survival by Modulating Macrophage Function via the IL-1α-MAPK Axis
Xintong He, Yonglin He, Xichuan Deng, Nan Lu, Anlong Li, Sijia Gao, Shiyan He, Yuran Wang, Nanzhe Fu, Zijie Wang, Yuxin Nie, Lei Xu
ACS Infectious Diseases.2025; 11(3): 676. CrossRef
- Adaptation of Pseudomonas helmanticensis to fat hydrolysates and SDS: fatty acid response and aggregate formation
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Ilya N. Zubkov , Anatoly P. Nepomnyshchiy , Vadim D. Kondratyev , Pavel N. Sorokoumov , Konstantin V. Sivak , Edward S. Ramsay , Sergey M. Shishlyannikov
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J. Microbiol. 2021;59(12):1104-1111. Published online October 26, 2021
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DOI: https://doi.org/10.1007/s12275-021-1214-5
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55
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Abstract
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An essential part of designing any biotechnological process is
examination of the physiological state of producer cells in
different phases of cultivation. The main marker of a bacterial
cell’s state is its fatty acid (FA) profile, reflecting membrane
lipid composition. Consideration of FA composition
enables assessment of bacterial responses to cultivation conditions
and helps biotechnologists understand the most significant
factors impacting cellular metabolism. In this work,
soil SDS-degrading Pseudomonas helmanticensis was studied
at the fatty acid profile level, including analysis of rearrangement
between planktonic and aggregated forms. The set of
substrates included fat hydrolysates, SDS, and their mixtures
with glucose. Such media are useful in bioplastic production
since they can help incrementally lower overall costs. Conventional
gas chromatography-mass spectrometry was used
for FA analysis. Acridine orange-stained aggregates were observed
by epifluorescence microscopy. The bacterium was
shown to change fatty acid composition in the presence of
hydrolyzed fats or SDS. These changes seem to be driven by
the depletion of metabolizable substrates in the culture medium.
Cell aggregation has also been found to be a defense
strategy, particularly with anionic surfactant (SDS) exposure.
It was shown that simple fluidity indices (such as saturated/
unsaturated FA ratios) do not always sufficiently characterize
a cell's physiological state, and morphological examination
is essential in cases where complex carbon sources are used.
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- Effect of different diet composition on the fat profile of two different black soldier fly larvae populations
M. Tognocchi, L. Abenaim, C. Adamaki-Sotiraki, G.C. Athanassiou, I.C. Rumbos, M. Mele, B. Conti, G. Conte
animal.2024; 18(7): 101205. CrossRef - Earth to Mars: A Protocol for Characterizing Permafrost in the Context of Climate Change as an Analog for Extraplanetary Exploration
Kimberley R. Miner, Joseph Razzell Hollis, Charles E. Miller, Kyle Uckert, Thomas A. Douglas, Emily Cardarelli, Rachel Mackelprang
Astrobiology.2023; 23(9): 1006. CrossRef - Preparation of polyhydroxyalkanoates using Pseudomonas helmanticensis in non-sterile media containing glycerol and sodium dodecyl sulfate
I. N. Zubkov, Yu. S. Bukin, P. N. Sorokoumov, S. M. Shishlyannikov
Proceedings of Universities. Applied Chemistry and Biotechnology.2022; 12(3): 479. CrossRef
- The small RNA RsaF regulates the expression of secreted virulence factors in Staphylococcus aureus Newman
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Niralee Patel , Mrinalini Nair
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J. Microbiol. 2021;59(10):920-930. Published online September 23, 2021
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DOI: https://doi.org/10.1007/s12275-021-1205-6
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Abstract
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The pathogenesis of Staphylococcus aureus, from local infections
to systemic dissemination, is mediated by a battery
of virulence factors that are regulated by intricate mechanisms,
which include regulatory proteins and small RNAs
(sRNAs) as key regulatory molecules. We have investigated
the involvement of sRNA RsaF, in the regulation of pathogenicity
genes hyaluronate lyase (hysA) and serine proteaselike
protein D (splD), by employing S. aureus strains with disruption
and overexpression of rsaF. Staphylococcus aureus
strain with disruption of rsaF exhibited marked down-regulation
of hysA transcripts by 0.2 to 0.0002 fold, and hyaluronate
lyase activity by 0.2–0.1 fold, as well as increased biofilm
formation, during growth from log phase to stationery
phase. These mutants also displayed down-regulation of splD
transcripts by 0.8 to 0.005 fold, and reduced activity of multiple
proteases by zymography. Conversely, overexpression of
rsaF resulted in a 2- to 4- fold increase in hysA mRNA levels
and hyaluronidase activity. Both hysA and splD mRNAs demonstrated
an increased stability in RsaF+ strains. In silico
RNA-RNA interaction indicated a direct base pairing of RsaF
with hysA and splD mRNAs, which was established in electrophoretic
mobility shift assays. The findings demonstrate
a positive regulatory role for small RNA RsaF in the expression
of the virulence factors, HysA and SplD.
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- Rational Design of High-Efficiency Synthetic Small Regulatory RNAs and Their Application in Robust Genetic Circuit Performance Through Tight Control of Leaky Gene Expression
Jun Ren, Nuong Thi Nong, Phuong N. Lam Vo, Hyang-Mi Lee, Dokyun Na
ACS Synthetic Biology.2024; 13(10): 3256. CrossRef - A comprehensive review on microbial hyaluronan-degrading enzymes: from virulence factors to biotechnological tools
Jia-Yu Jiang, Dai Xue, Jin-Song Gong, Qin-Xin Zheng, Yue-Sheng Zhang, Chang Su, Zheng-Hong Xu, Jin-Song Shi
Bioresources and Bioprocessing.2024;[Epub] CrossRef - A Regulatory sRNA rli41 is Implicated in Cell Adhesion, Invasion and Pathogenicity in Listeria monocytogenes
L. X. Wang, C. H. Ji, C. C. Ning, Y. C. Liu, Z. Y. Li, Y. Q. Sun, X. Z. Xia, X. P. Cai, Q. L. Meng, J. Qiao
Applied Biochemistry and Microbiology.2022; 58(S1): S47. CrossRef - A Review of Biofilm Formation of Staphylococcus aureus and Its Regulation Mechanism
Qi Peng, Xiaohua Tang, Wanyang Dong, Ning Sun, Wenchang Yuan
Antibiotics.2022; 12(1): 12. CrossRef - Thirty Years of sRNA-Mediated Regulation in Staphylococcus aureus: From Initial Discoveries to In Vivo Biological Implications
Guillaume Menard, Chloé Silard, Marie Suriray, Astrid Rouillon, Yoann Augagneur
International Journal of Molecular Sciences.2022; 23(13): 7346. CrossRef
- The inner membrane protein LapB is required for adaptation to cold stress in an LpxC-independent manner
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Han Byeol Lee , Si Hyoung Park , Chang-Ro Lee
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J. Microbiol. 2021;59(7):666-674. Published online May 15, 2021
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DOI: https://doi.org/10.1007/s12275-021-1130-8
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Abstract
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The inner membrane protein lipopolysaccharide assembly
protein B (LapB) is an adaptor protein that activates the proteolysis
of LpxC by an essential inner membrane metalloprotease,
FtsH, leading to a decrease in the level of lipopolysaccharide
in the membrane. In this study, we revealed the
mechanism by which the essential inner membrane protein
YejM regulates LapB and analyzed the role of the transmembrane
domain of LapB in Escherichia coli. The transmembrane
domain of YejM genetically and physically interacted with
LapB and inhibited its function, which led to the accumulation
of LpxC. The transmembrane domain of LapB was indispensable
for both its physical interaction with YejM and
its regulation of LpxC proteolysis. Notably, we found that the
lapB mutant exhibited strong cold sensitivity and this phenotype
was not associated with increased accumulation of LpxC.
The transmembrane domain of LapB was also required for
its role in adaptation to cold stress. Taken together, these
results
showed that LapB plays an important role in both
the regulation of LpxC level, which is controlled by its interaction
with the transmembrane domain of YejM, and adaptation
to cold stress, which is independent of LpxC.
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Citations
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PhoPQ-mediated lipopolysaccharide modification governs intrinsic resistance to tetracycline and glycylcycline antibiotics in
Escherichia coli
Byoung Jun Choi, Umji Choi, Dae-Beom Ryu, Chang-Ro Lee, Mehrad Hamidian, You-Hee Cho
mSystems.2024;[Epub] CrossRef -
Lytic transglycosylase repertoire diversity enables intrinsic antibiotic resistance and daughter cell separation in
Escherichia coli
under acidic stress
Ji Eun Son, Si Hyoung Park, Umji Choi, Chang-Ro Lee, Laurent Poirel
Antimicrobial Agents and Chemotherapy.2024;[Epub] CrossRef - Trans-cinnamaldehyde inhibits Escherichia coli growth by regulating lipopolysaccharide accumulation
Huanling Xing, Xiaomin Liu, Jianhao Lin, Mingfei Sun, Junyi Huang, Xinghai Li, Yanqun Li, Shining Guo, Fang Zhou, Hong Wu
Food Bioscience.2024; 61: 104559. CrossRef - Coordinated and Distinct Roles of Peptidoglycan Carboxypeptidases DacC and DacA in Cell Growth and Shape Maintenance under Stress Conditions
Umji Choi, Si Hyoung Park, Han Byeol Lee, Ji Eun Son, Chang-Ro Lee, Cristina Solano
Microbiology Spectrum.2023;[Epub] CrossRef - NoiD, a DedA membrane protein required for homeostasis maintaining of Rhizobium leguminosarum biovar viciae during symbiosis with Pisum sativum
Xiaofang Li, Jiaming Xu, Yajuan Wei, Zirui Chen
Symbiosis.2022; 86(1): 81. CrossRef - Conserved Tandem Arginines for PbgA/YejM Allow Salmonella Typhimurium To Regulate LpxC and Control Lipopolysaccharide Biogenesis during Infection
Nicole P. Giordano, Joshua A. Mettlach, Zachary D. Dalebroux, Manuela Raffatellu
Infection and Immunity.2022;[Epub] CrossRef - Divergent Effects of Peptidoglycan Carboxypeptidase DacA on Intrinsic β-Lactam and Vancomycin Resistance
Si Hyoung Park, Umji Choi, Su-Hyun Ryu, Han Byeol Lee, Jin-Won Lee, Chang-Ro Lee, Krisztina M. Papp-Wallace
Microbiology Spectrum.2022;[Epub] CrossRef - Cryo-EM structure of transmembrane AAA+ protease FtsH in the ADP state
Wu Liu, Martien Schoonen, Tong Wang, Sean McSweeney, Qun Liu
Communications Biology.2022;[Epub] CrossRef - Checkpoints That Regulate Balanced Biosynthesis of Lipopolysaccharide and Its Essentiality in Escherichia coli
Gracjana Klein, Alicja Wieczorek, Martyna Szuster, Satish Raina
International Journal of Molecular Sciences.2021; 23(1): 189. CrossRef
- Autophagic elimination of Trypanosoma cruzi in the presence of metals
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Laís Pessanha de Carvalho , Edésio José Tenório de Melo
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J. Microbiol. 2019;57(10):918-926. Published online August 28, 2019
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DOI: https://doi.org/10.1007/s12275-019-9018-6
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49
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Abstract
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Trypanosoma cruzi is an obligate intracellular parasite transmitted
to vertebrate hosts by blood-sucking insects. Molecules
present in parasites and mammalian cells allow the recognition
and parasite internalization. Metallic ions play an essential
role in the establishment and maintenance of hostparasite
interaction. However, little is known about how parasites
handle with essential and nonessential metal quotas.
This study aimed to investigate the influence of metal ions
on the biological processes of T. cruzi infected cells. Infected
cells were incubated with ZnCl2, CdCl2, and HgCl2 for 12 h
and labeled with different specific dyes to investigate the cellular
events related to intracellular parasite death and elimination.
Infected host cells and parasite’s mitochondria underwent
functional and structural disorders, in addition to
parasite’s DNA condensation and pH decrease on host cells,
which led to parasite death. Further investigations suggested
that lysosomes were involved in pH decrease and the double
membrane of the endoplasmic reticulum formed vacuoles
surrounding damaged parasites, which indicate the occurrence
of autophagy for parasite elimination. In conclusion,
low concentrations of nonessential and essential metals cause
a series of damage to Trypanosoma cruzi organelles, leading
to its loss of viability, death, and elimination, with no removal
of the host cells.
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- The role of host autophagy in intracellular protozoan parasites diseases
Rafael Cardoso Maciel Costa Silva, Jhones Sousa Ribeiro, Thalita Santos de Moraes de Farias, Leonardo Holanda Travassos
Archives of Biochemistry and Biophysics.2024; 761: 110186. CrossRef - Personalized Prevention in Mercury-Induced Amyotrophic Lateral Sclerosis: A Case Report
Nicola Magnavita, Mario Sabatelli, Egeria Scoditti, Francesco Chirico
Applied Sciences.2020; 10(21): 7839. CrossRef - Essential and nonessential metal effects on extracellular Leishmania amazonensis in vitro
Laís Pessanha de Carvalho, Jana Held, Edésio José Tenório de Melo
Experimental Parasitology.2020; 209: 107826. CrossRef
- Vacuolar zinc transporter Zrc1 is required for detoxification of excess intracellular zinc in the human fungal pathogen Cryptococcus neoformans
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Minsu Cho , Guanggan Hu , Mélissa Caza , Linda C. Horianopoulos , James W. Kronstad , Won Hee Jung
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J. Microbiol. 2018;56(1):65-71. Published online January 4, 2018
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DOI: https://doi.org/10.1007/s12275-018-7475-y
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51
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Abstract
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Zinc is an important transition metal in all living organisms
and is required for numerous biological processes. However,
excess zinc can also be toxic to cells and cause cellular stress.
In the model fungus Saccharomyces cerevisiae, a vacuolar zinc
transporter, Zrc1, plays important roles in the storage and
detoxification of excess intracellular zinc to protect the cell.
In this study, we identified an ortholog of the S. cerevisiae
ZRC1 gene in the human fungal pathogen Cryptococcus neoformans.
Zrc1 was localized in the vacuolar membrane in C.
neoformans, and a mutant lacking ZRC1 showed significant
growth defects under high-zinc conditions. These results suggested
a role for Zrc1 in zinc detoxification. However, contrary
to our expectation, the expression of Zrc1 was induced
in cells grown in zinc-limited conditions and decreased upon
the addition of zinc. These expression patterns were similar
to those of Zip1, the high-affinity zinc transporter in the plasma
membrane of C. neoformans. Furthermore, we used the
zrc1 mutant in a murine model of cryptococcosis to examine
whether a mammalian host could inhibit the survival of C.
neoformans using zinc toxicity. We found that the mutant
showed no difference in virulence compared with the wildtype
strain. This result suggests that Zrc1-mediated zinc detoxification
is not required for the virulence of C. neoformans,
and imply that zinc toxicity may not be an important aspect
of the host immune response to the fungus.
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Citations
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- CDF family of zinc transporters ZRC-1, MSC-2, and ZRG-17 are involved in survival at high zinc conditions, vegetative development, and cellulase utilization in Neurospora crassa
Serena Ngiimei D, Ranjan Tamuli
Journal of Biosciences.2024;[Epub] CrossRef - “We've got to get out”—Strategies of human pathogenic fungi to escape from phagocytes
Johannes Sonnberger, Lydia Kasper, Theresa Lange, Sascha Brunke, Bernhard Hube
Molecular Microbiology.2024; 121(3): 341. CrossRef - Zinc Starvation Induces Cell Wall Remodeling and Activates the Antioxidant Defense System in Fonsecaea pedrosoi
Tayná Aparecida de Oliveira Santos, Lucas Weba Soares, Lucas Nojosa Oliveira, Dayane Moraes, Millena Silva Mendes, Célia Maria de Almeida Soares, Alexandre Melo Bailão, Mirelle Garcia Silva Bailão
Journal of Fungi.2024; 10(2): 118. CrossRef -
Characterization and functional analysis of zinc trafficking in the human fungal pathogen
Candida parapsilosis
Tamás Takács, Mihály Tibor Németh, Flóra Bohner, Csaba Vágvölgyi, Ferenc Jankovics, Duncan Wilson, Attila Gácser
Open Biology.2022;[Epub] CrossRef - Fungal–Metal Interactions: A Review of Toxicity and Homeostasis
Janelle R. Robinson, Omoanghe S. Isikhuemhen, Felicia N. Anike
Journal of Fungi.2021; 7(3): 225. CrossRef - Zinc at the Host–Fungus Interface: How to Uptake the Metal?
Lucas Weba Soares, Alexandre Melo Bailão, Célia Maria de Almeida Soares, Mirelle Garcia Silva Bailão
Journal of Fungi.2020; 6(4): 305. CrossRef - Transcription factors and transporters in zinc homeostasis: lessons learned from fungi
David J. Eide
Critical Reviews in Biochemistry and Molecular Biology.2020; 55(1): 88. CrossRef - RNase G controls tpiA mRNA abundance in response to oxygen availability in Escherichia coli
Jaejin Lee, Dong-Ho Lee, Che Ok Jeon, Kangseok Lee
Journal of Microbiology.2019; 57(10): 910. CrossRef - The coordinated action of RNase III and RNase G controls enolase expression in response to oxygen availability in Escherichia coli
Minho Lee, Minju Joo, Minji Sim, Se-Hoon Sim, Hyun-Lee Kim, Jaejin Lee, Minkyung Ryu, Ji-Hyun Yeom, Yoonsoo Hahn, Nam-Chul Ha, Jang-Cheon Cho, Kangseok Lee
Scientific Reports.2019;[Epub] CrossRef - TheAspergillus fumigatustranscription factor AceA is involved not only in Cu but also in Zn detoxification through regulating transporters CrpA and ZrcA
Zhendong Cai, Wenlong Du, Zheng Zhang, Luyu Guan, Qiuqiong Zeng, Yanfei Chai, Chuanchao Dai, Ling Lu
Cellular Microbiology.2018; 20(10): e12864. CrossRef - Biphasic zinc compartmentalisation in a human fungal pathogen
Aaron C. Crawford, Laura E. Lehtovirta-Morley, Omran Alamir, Maria J. Niemiec, Bader Alawfi, Mohammad Alsarraf, Volha Skrahina, Anna C. B. P. Costa, Andrew Anderson, Sujan Yellagunda, Elizabeth R. Ballou, Bernhard Hube, Constantin F. Urban, Duncan Wilson,
PLOS Pathogens.2018; 14(5): e1007013. CrossRef
- Metabolism-mediated induction of zinc tolerance in Brassica rapa by Burkholderia cepacia CS2-1
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Sang-Mo Kang , Raheem Shahzad , Saqib Bilal , Abdul Latif Khan , Young-Hyun You , Won-Hee Lee , Hee-La Ryu , Ko-Eun Lee , In-Jung Lee
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J. Microbiol. 2017;55(12):955-965. Published online December 7, 2017
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DOI: https://doi.org/10.1007/s12275-017-7305-7
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55
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Abstract
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Brassica rapa (Chinese cabbage) is an essential component
of traditional Korean food. However, the crop is often subject
to zinc (Zn+) toxicity from contaminated irrigation water,
which, as a result, compromises plant growth and production,
as well as the health of human consumers. The present study
investigated the bioaccumulation of Zn+ by Burkholderia cepacia
CS2-1 and its effect on the heavy metal tolerance of
Chinese cabbage. Strain CS2-1 was identified and characterized
on the basis of 16S rRNA sequences and phylogenetic
analysis. The strain actively produced indole-3-acetic acid
(3.08 ± 0.21 μg/ml) and was also able to produce siderophore,
solubilize minerals, and tolerate various concentrations of Zn+.
The heavy metal tolerance of B. rapa plants was enhanced
by CS2-1 inoculation, as indicated by growth attributes, Zn+
uptake, amino acid synthesis, antioxidant levels, and endogenous
hormone (ABA and SA) synthesis. Without inoculation,
the application of Zn+ negatively affected the growth and
physiology of B. rapa plants. However, CS2-1 inoculation
improved plant growth, lowered Zn+ uptake, altered both
amino acid regulation and levels of flavonoids and phenolics,
and significantly decreased levels of superoxide dismutase,
endogenous abscisic acid, and salicylic acid. These findings
indicate that B. cepacia CS2-1 is suitable for bioremediation
against Zn+-induced oxidative stress.
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- Assessing the health of climate-sensitive trees in a subalpine ecosystem through microbial community dynamics
Bo Ram Kang, Soo Bin Kim, Jin-Kyung Hong, Seok Hyun Ahn, Jinwon Kim, Nayeon Lee, Tae Kwon Lee
Science of The Total Environment.2024; 957: 177724. CrossRef - Exploring the Phosphate Solubilising Rhizobacteria isolated from Wild Musa Rhizosphere and their Efficacy on Growth Promotion of Phaseolus vulgaris
Mum Tatung, Chitta Ranjan Deb
Journal of Experimental Biology and Agricultural Sciences.2024; 12(5): 742. CrossRef - Remediation of benzo[a]pyrene contaminated soils by moderate chemical oxidation coupled with microbial degradation
Bin Chen, Jiang Xu, Huijie Lu, Lizhong Zhu
Science of The Total Environment.2023; 871: 161801. CrossRef - Assessing the Involvement of Selected Phenotypes of Pseudomonas simiae PICF7 in Olive Root Colonization and Biological Control of Verticillium dahliae
Nuria Montes-Osuna, Carmen Gómez-Lama Cabanás, Antonio Valverde-Corredor, Roeland L. Berendsen, Pilar Prieto, Jesús Mercado-Blanco
Plants.2021; 10(2): 412. CrossRef - Ameliorative effect of indole-3-acetic acid- and siderophore-producing Leclercia adecarboxylata MO1 on cucumber plants under zinc stress
Sang-Mo Kang, Raheem Shahzad, Muhammad Aaqil Khan, Zuhair Hasnain, Ko-Eun Lee, Hee-Soon Park, Lee-Rang Kim, In-Jung Lee
Journal of Plant Interactions.2021; 16(1): 30. CrossRef - Cadmium stress triggers significant metabolic reprogramming in Enterococcus faecium CX 2–6
Xin Cheng, Bowen Yang, Jinfang Zheng, Hongyu Wei, Xuehuan Feng, Yanbin Yin
Computational and Structural Biotechnology Journal.2021; 19: 5678. CrossRef - Complete Genome Sequence of Pseudomonas psychrotolerans CS51, a Plant Growth-Promoting Bacterium, Under Heavy Metal Stress Conditions
Sang-Mo Kang, Sajjad Asaf, Abdul Latif Khan, Lubna, Adil Khan, Bong-Gyu Mun, Muhammad Aaqil Khan, Humaira Gul, In-Jung Lee
Microorganisms.2020; 8(3): 382. CrossRef - The plant-growth promoting bacteria promote cadmium uptake by inducing a hormonal crosstalk and lateral root formation in a hyperaccumulator plant Sedum alfredii
Yingjie Wu, Luyao Ma, Qizhen Liu, Mette Vestergård, Olivera Topalovic, Qiong Wang, Qiyao Zhou, Lukuan Huang, Xiaoe Yang, Ying Feng
Journal of Hazardous Materials.2020; 395: 122661. CrossRef - Effect of Ammonia and Indole-3-acetic Acid Producing Endophytic Klebsiella pneumoniae YNA12 as a Bio-Herbicide for Weed Inhibition: Special Reference with Evening Primroses
Sang-Mo Kang, Saqib Bilal, Raheem Shahzad, Yu-Na Kim, Chang-Wook Park, Ko-Eun Lee, Jeong-Ran Lee, In-Jung Lee
Plants.2020; 9(6): 761. CrossRef - Potential role of plant growth-promoting bacteria in Miscanthus x giganteus phytotechnology applied to the trace elements contaminated soils
Valentina Pidlisnyuk, Aigerim Mamirova, Kumar Pranaw, Pavlo Y. Shapoval, Josef Trögl, Asil Nurzhanova
International Biodeterioration & Biodegradation.2020; 155: 105103. CrossRef - Phytohormones enabled endophytic Penicillium funiculosum LHL06 protects Glycine max L. from synergistic toxicity of heavy metals by hormonal and stress-responsive proteins modulation
Saqib Bilal, Raheem Shahzad, Abdul Latif Khan, Ahmed Al-Harrasi, Chang Kil Kim, In-Jung Lee
Journal of Hazardous Materials.2019; 379: 120824. CrossRef - Amelioration of heavy metal stress by endophytic Bacillus amyloliquefaciens RWL-1 in rice by regulating metabolic changes: potential for bacterial bioremediation
Raheem Shahzad, Saqib Bilal, Muhammad Imran, Abdul Latif Khan, Areej Ahmed Alosaimi, Hussah Abdullah Al-Shwyeh, Hanan Almahasheer, Suriya Rehman, In-Jung Lee
Biochemical Journal.2019; 476(21): 3385. CrossRef
Research Support, Non-U.S. Gov'ts
- Negative regulation of the vacuole-mediated resistance to K+ stress by a novel C2H2 zinc finger transcription factor encoded by aslA in Aspergillus nidulans
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Dong Soo Park , Yeong Man Yu , Yong Jin Kim , Pil Jae Maeng
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J. Microbiol. 2015;53(2):100-110. Published online January 28, 2015
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DOI: https://doi.org/10.1007/s12275-015-4701-8
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58
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Abstract
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In fungi and plants, vacuoles function as a storage and sequestration
vessel for a wide variety of ions and are responsible
for cytosolic ion homeostasis and responses to ionic
shock. In the filamentous fungus Aspergillus nidulans, however,
little is known about the molecular genetic mechanisms
of vacuolar biogenesis and function. In the present study,
we analyzed the function of the aslA gene (AN5583) encoding
a novel C2H2-type zinc finger transcription factor (TF)
in relation to K+ stress resistance, vacuolar morphology, and
vacuolar transporters. The mutant lacking aslA showed increased
mycelial growth and decreased branching at high
K+ concentrations. Deletion of aslA also caused elevated K+
stress-inducible expression of the genes, nhxA (AN2288),
vnxA (AN6986), and vcxA (AN0471), encoding putative endosomal
and vacuolar cation/H+ exchangers, as well as cpyA
and vpsA genes encoding the proteins involved in vacuolar
biogenesis. Interestingly, vacuolar fragmentation induced by
K+ stress was alleviated by aslA deletion, resulting in persistence
of unfragmented vacuoles. In the presence of bafilomycin,
an inhibitor of vacuolar H+-ATPase, the mutant phenotype
was suppressed in terms of growth rates and vacuolar
morphology. These results together suggest that the C2H2-
type zinc finger TF AslA attenuates the K+ stress-inducible
expression of the genes encoding the ion pumps involved in
vacuolar sequestration of K+ ions powered by vacuolar H+-
ATPase, as well as the proteins that function in vacuolar
biogenesis.
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- The pleiotropic phenotype of FlbA of Aspergillus niger is explained in part by the activity of seven of its downstream-regulated transcription factors
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- Effect of Zinc on Growth Performance, Gut Morphometry, and Cecal Microbial Community in Broilers Challenged with Salmonella enterica serovar Typhimurium
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Yuxin Shao , Zhao Lei , Jianmin Yuan , Ying Yang , Yuming Guo , Bingkun Zhang
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J. Microbiol. 2014;52(12):1002-1011. Published online November 29, 2014
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DOI: https://doi.org/10.1007/s12275-014-4347-y
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Abstract
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To evaluate the effects of supplemental zinc on growth performance,
gut morphometry, and the cecal microbial community
in broilers challenged with Salmonella typhimurium,
180, 1-day-old male Cobb 500 broiler chicks were randomly
assigned to 3 treatments with ten replicates for a 42 day experiment.
The 3 treatments were: unchallenged, S. typhimurium-
challenged, and S. typhimurium-challenged with 120
mg/kg of zinc supplementation in the diet. Salmonella infection
caused a reduction in body-weight gain and feed intake,
disrupted the intestinal structure by decreasing the
villus-height/crypt-depth ratio of the ileum and increasing
the apoptotic index of ileal epithelial cells. Moreover, the
cecal microbial community was altered by Salmonella infection,
as demonstrated by a reduced number of Lactobacillus
and total bacteria. Dietary zinc supplementation improved
growth performance by increasing the body-weight gain
and feed intake in the challenged broilers. In addition, zinc
repaired intestinal injury by reducing the apoptotic index of
ileal epithelial cells, enhancing villus height and the villusheight/
crypt-depth ratio of the ileum, and the proliferation
index of ileal epithelial cells. Finally, zinc regulated the cecal
microbial community by increasing the number of total bacteria
and beneficial Lactobacillus bacteria, and reducing the
number of Salmonella. The results indicated that dietary
zinc supplementation improved growth performance, intestinal
morphology, and intestinal microbiota in S. typhimurium-
challenged broilers.
-
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- Potentiation of Bacterial Killing Activity of Zinc Chloride by Pyrrolidine Dithiocarbamate
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Eun-Kyoung Choi , Hye-Hyang Lee , Mi-Sun Kang , Byung-Gook Kim , Hoi-Soon Lim , Seon-Mi Kim , In-Chol Kang
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J. Microbiol. 2010;48(1):40-43. Published online March 11, 2010
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DOI: https://doi.org/10.1007/s12275-009-0049-2
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Abstract
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Zinc has antimicrobial activity and zinc salts including zinc chloride (ZnCl2) have been used for the control of oral malodor. In this study, we hypothesized that pyrrolidine dithiocarbamate (PDTC), a zinc ionophore, may enhance antimicrobial efficacy of ZnCl2. The bactericidal effectiveness of ZnCl2 alone (0.5-8 mM) or in
combination with PDTC (1 or 10 μM) was evaluated by in vitro short (1 h) time-killing assays against Fusobacterium nucleatum and Porphyromonas gingivalis. Only a slight viability decrease was observed with ZnCl2 or PDTC alone after 1-h incubation. By contrast, combination of ZnCl2 and PDTC could achieve a more than 100-fold viability reduction compared with ZnCl2 or PDTC alone in F. nucleatum and P. gingivalis. Therefore, PDTC greatly enhanced the bactericidal activity of ZnCl2 against the oral malodor-producing bacteria. These results suggest that use of PDTC may be useful for enhancing bactericidal activity of antimalodor regimens of zinc salts.
- Bacterial Diversity at Different Depths in Lead-Zinc Mine Tailings as Revealed by 16S rRNA Gene Libraries
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Han-Bo Zhang , Wen Shi , Ming-Xia Yang , Tao Sha , Zhi-Wei Zhao
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J. Microbiol. 2007;45(6):479-484.
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DOI: https://doi.org/2648 [pii]
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Abstract
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Bacterial communities at 10 cm, 100 cm, and 200 cm depths in a 100-year-old lead-zinc tailing heap were evaluated by constructing 16S rRNA gene libraries. In total, 98 operational taxonomic units (OTUs) were identified from 193 clones at a 3% sequence difference level. The OTU number and species richness decreased with the depth. Species composition was significantly different between the three libraries. Fifty-seven percent of the examined clones were Acidobacteria and 27% belonged to Proteobacteria. Other sequences included Chloroflexi, Firmicutes, Chlamydiae, Actinobacteria, Gemmatimonadetes, Nitrospira, and three unclassified OTUs. Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Firmicutes, and Actinobacteria were mainly distributed in the rhizosphere of naturally colonizing plants; however, Deltaproteobacteria, Acidobacteria, and Chloroflexi tended to inhabit the deeper tailings (below the 100 cm-depth).
- Effect of Zinc and Calcium on the Intracelularly uptake of Cadimium and growth of Escherichia coli
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Hong, Hyo Bong , Brown, Lewis R. , Kim, Jong Kyu
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J. Microbiol. 1995;33(4):302-306.
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Abstract
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E. coli was tested for their ability to uptake cadmium intracellularly, and the effect of zinc and calcium on cadmium toxicity to E. coli was observed. In addition, the effect of zinc and calcium on the uptake of cadimium was also studied. This study showed that living E. coli cells took up more cadmium than the dead cells. E. coli in the log phase uptake cadimiumm more actively than E. coli in the stationary phase. These results suggested that there may be metabolic reactions or compounds which encourage the uptake of cadimium. This study also showed that cadimium was sequestered by cell components of which molecular weight is about 30,000. Adding of zinc and calcium chloride reduced cadmium toxicity in E. coli and encouraged intracellular uptake by E coli. However adding of heavy metal solutions helped the microorganisms to adsorb more cadmium. Extremely high or low concentrations of zinc, however, did not affect cell viability.