Skip Navigation
Skip to contents

Journal of Microbiology : Journal of Microbiology

OPEN ACCESS
SEARCH
Search
Advanced Search
mobile menu button

Search

Page Path
HOME > Search
60 "omics"
Filter
Filter
Article category
Keywords
More +
Publication year
More +
Authors
More +
Funded articles
Full article
Multi-omics to evaluate the protective mechanisms during Akkermansia muciniphila treatment of Candida albicans colonization and subsequent infection
Qiulin Luo, Huan Zhang, Youming Pu, Yingpu Wei, Jiangkun Yu, Xiaoshen Wang, Qin Cai, Ying Hu, Wenli Yuan
J. Microbiol. 2025;63(8):e2502007.   Published online August 31, 2025
DOI: https://doi.org/10.71150/jm.2502007
  • 1,818 View
  • 55 Download
AbstractAbstract PDFSupplementary Material

Akkermansia muciniphila (AKK, A. muciniphila) fortifies the intestinal barrier, inhibits the colonization of pathogenic bacteria, and protects the host’s health. Nevertheless, the existing literature offers inadequate evidence to ascertain whether A. muciniphila can effectively treat Candida albicans (C. albicans) infections in vitro, and the underlying mechanisms remain ambiguous. This study, animal models were established through gavage with clinical isolates of C. albicans to induce gastrointestinal tract colonization and subsequent translocation infection. The models were subsequently administered A. muciniphila. We examined the analysis of 16S rRNA gene sequencing, metabolomics of colonic contents, and transcriptomics of colonic tissue. The intestinal barrier, inflammatory responses, and immune cell infiltration are analyzed. This study revealed that A. muciniphila markedly mitigated C. albicans translocation infection and modified the intestinal microbial community structure and metabolic attributes in model mice. After administering A. muciniphila to the translocation infection group, there was a notable increase in the prevalence of bacteria that produce short-chain fatty acids, including Eubacterium_F. Moreover, there was a significant increase in the levels of specific pathogens, including Faecalibaculum, Turicibacter, and Turicimonas. The study demonstrated that A. muciniphila treatment can improve the composition of intestinal microbiota and metabolites, augment the tight junctions of colonic tissue and diminish systemic inflammatory response. This presents an innovative therapeutic approach for the potential treatment of intestinal C. albicans infection using A. muciniphila.

Journal Articles
Rhodobacteraceae are Prevalent and Ecologically Crucial Bacterial Members in Marine Biofloc Aquaculture
Meora Rajeev, Jang-Cheon Cho
J. Microbiol. 2024;62(11):985-997.   Published online November 15, 2024
DOI: https://doi.org/10.1007/s12275-024-00187-0
  • 503 View
  • 7 Download
  • 12 Web of Science
  • 9 Crossref
AbstractAbstract PDF
Bioflocs are microbial aggregates primarily composed of heterotrophic bacteria that play essential ecological roles in maintaining animal health, gut microbiota, and water quality in biofloc aquaculture systems. Despite the global adoption of biofloc aquaculture for shrimp and fish cultivation, our understanding of biofloc microbiota-particularly the dominant bacterial members and their ecological functions-remains limited. In this study, we employed integrated metataxonomic and metagenomic approaches to demonstrate that the family Rhodobacteraceae of Alphaproteobacteria consistently dominates the biofloc microbiota and plays essential ecological roles. We first analyzed a comprehensive metataxonomic dataset consisting of 200 16S rRNA gene amplicons collected across three Asian countries: South Korea, China, and Vietnam. Taxonomic investigation identified Rhodobacteraceae as the dominant and consistent bacterial members across the datasets. The predominance of this taxon was further validated through metagenomics approaches, including read taxonomy and read recruitment analyses. To explore the ecological roles of Rhodobacteraceae, we applied genome-centric metagenomics, reconstructing 45 metagenome-assembled genomes. Functional annotation of these genomes revealed that dominant Rhodobacteraceae genera, such as Marivita, Ruegeria, Dinoroseobacter, and Aliiroseovarius, are involved in vital ecological processes, including complex carbohydrate degradation, aerobic denitrification, assimilatory nitrate reduction, ammonium assimilation, and sulfur oxidation. Overall, our study reveals that the common practice of carbohydrate addition in biofloc aquaculture systems fosters the growth of specific heterotrophic bacterial communities, particularly Rhodobacteraceae. These bacteria contribute to maintaining water quality by removing toxic nitrogen and sulfur compounds and enhance animal health by colonizing gut microbiota and exerting probiotic effects.

Citations

Citations to this article as recorded by  
  • Ecological disposal of bauxite tailings and red mud: A sustainable strategy for bauxite industrial waste reuse
    Xusheng Jiang, Xuehong Zhang, Xijun Liu, Hui Qiu, Mengting Lin, Guo Yu, Shouhui Zhang, Jie Liu
    Resources, Conservation and Recycling.2025; 218: 108259.     CrossRef
  • Variation of Microorganisms and Water Quality, and Their Impacts on the Production of Penaeus vannamei in Small-Scale Greenhouse Ponds
    Siyu Wu, Haochang Su, Lei Su, Yucheng Cao, Guoliang Wen, Yu Xu, Bin Shen, Shanshan Wu, Yuting Su, Xiaojuan Hu
    Microorganisms.2025; 13(3): 546.     CrossRef
  • Effect of hydraulic retention time of sponge-based trickling filter for shrimp culture recirculating tank
    Penpicha Satanwat, Mami Nagai, Tharin Boonprasertsakul, Akihiro Nagano, Tsutomu Okubo, Nur Adlin, Takahiro Watari, Masashi Hatamoto, Takashi Yamaguchi, Sitthakarn Sitthi, Wiboonluk Pungrasmi, Rapeepun Vanichviriyakit, Sorawit Powtongsook
    Process Safety and Environmental Protection.2025; 198: 107154.     CrossRef
  • Divergence patterns of bacterial communities between larviculture systems of two Penaeus vannamei strains with distinct culture traits
    Heng Chen, Fengdie Zhang, Junqi Yu, Rudan Chen, Demin Zhang, Chen Chen, Kai Wang
    Aquaculture.2025; 606: 742572.     CrossRef
  • Influence of Polyester and Denim Microfibers on the Treatment and Formation of Aerobic Granules in Sequencing Batch Reactors
    Victoria Okhade Onyedibe, Hassan Waseem, Hussain Aqeel, Steven N. Liss, Kimberley A. Gilbride, Roxana Sühring, Rania Hamza
    Processes.2025; 13(7): 2272.     CrossRef
  • Where Have You Been? Backtracking Microplastic to Its Source Using the Biomolecular Composition of the Ecocorona
    Amanda L. Dawson, Utpal Bose, Sophia Escobar-Correas, Kuok Yap, David J. Craik, Cassandra L. Pegg
    Environmental Science & Technology.2025; 59(41): 22227.     CrossRef
  • Effects of butyric acid on the inhibition of Vibrio parahaemolyticus and its impacts on growth performance, intestinal microbiota, and water microbiota in Litopenaeus vannamei
    Minghan Yin, Zhangyi Zheng, Ruiyan Xing, Lefei Jiao, Moussa Gouife, Tinghong Ming, Fei Kong, Shuang Qiu, Jiajie Xu
    Aquaculture Reports.2025; 45: 103078.     CrossRef
  • Evaluating the potential of Rhodopseudomonas faecalis PA2 as a probiotic and biofloc supplement for Nile tilapia (Oreochromis niloticus)
    Wipavee Thaimuangphol, Ranumas Sukkum, Zhongliang Wang, Chewapat Saejung
    Aquaculture Reports.2025; 45: 103201.     CrossRef
  • Valorization of Invasive Aquatic Weed (Eichhornia crassipes) Into a Sustainable Carbon Source in GIFT‐Based Biofloc Systems
    Megha Lovejan, K. M. Mujeeb Rahiman, C. G. Joshy, R. Vipina, Remy Ntakirutimana, Jianguang Qin
    Aquaculture Nutrition.2025;[Epub]     CrossRef
Genomic Characterization and Comparative Analysis of Streptococcus zhangguiae sp. nov. Isolated from the Respiratory Tract of Marmota Himalayana
Caixin Yang, Jiajia Ma, Huimin Zhou, Jing Yang, Ji Pu, Shan Lu, Dong Jin, Liyun Liu, Kui Dong, Jianguo Xu
J. Microbiol. 2024;62(11):951-963.   Published online November 4, 2024
DOI: https://doi.org/10.1007/s12275-024-00177-2
  • 351 View
  • 7 Download
AbstractAbstract PDF
Two Gram-stain-positive, oxidase-negative, non-motile, facultative anaerobic, α-hemolytic, coccus-shaped bacteria (zg-86T and zg-70) were isolated from the respiratory tracts of marmots (Marmota Himalayana) on the Qinghai-Tibet Plateau of China. Phylogenetic analysis of the 16S rRNA gene and 545 core genes revealed that these two strains belong to the Streptococcus genus. These strains were most closely related to Streptococcus respiraculi HTS25T, Streptococcus cuniculi CCUG 65085T, and Streptococcus marmotae HTS5T. The average nucleotide identity (ANI) and digital DNA‒DNA hybridization (dDDH) were below the threshold for species delineation. The predominant cellular fatty acids (CFAs) in this novel species were C16:0, C18:0, and C18:1ω9c, whereas the primary polar lipids were phosphatidylglycerol (PG), phosphatidylethanolamine (PE) and an unknown phosphoglycolipid (PGL). The optimal growth conditions for the strains were 37 °C, pH 7.0, and 0.5% (w/v) NaCl on brain-heart infusion (BHI) agar supplemented with 5% defibrinated sheep blood. Comparative genomics analyses revealed the potential pathogenicity of strain zg-86T through comparisons with suis subclade strains in terms of virulence factors, pathogen-host interactions (PHIs) and mobile genetic factors (MGEs). Based on the phenotypic characteristics and phylogenetic analyses, we propose that these two isolates represent novel species in the genus Streptococcus, for which the names Streptococcus zhangguiae sp. nov. (the type strain zg-86T=GDMCC 1.1758T=JCM 34273T) is proposed.
Review
Extensive Genomic Rearrangement of Catalase-Less Cyanobloom-Forming Microcystis aeruginosa in Freshwater Ecosystems
Minkyung Kim, Jaejoon Jung, Wonjae Kim, Yerim Park, Che Ok Jeon, Woojun Park
J. Microbiol. 2024;62(11):933-950.   Published online October 8, 2024
DOI: https://doi.org/10.1007/s12275-024-00172-7
  • 539 View
  • 11 Download
  • 4 Web of Science
  • 4 Crossref
AbstractAbstract PDF
Many of the world's freshwater ecosystems suffer from cyanobacteria-mediated blooms and their toxins. However, a mechanistic understanding of why and how Microcystis aeruginosa dominates over other freshwater cyanobacteria during warmer summers is lacking. This paper utilizes comparative genomics with other cyanobacteria and literature reviews to predict the gene functions and genomic architectures of M. aeruginosa based on complete genomes. The primary aim is to understand this species' survival and competitive strategies in warmer freshwater environments. M. aeruginosa strains exhibiting a high proportion of insertion sequences (~ 11%) possess genomic structures with low synteny across different strains. This indicates the occurrence of extensive genomic rearrangements and the presence of many possible diverse genotypes that result in greater population heterogeneities than those in other cyanobacteria in order to increase survivability during rapidly changing and threatening environmental challenges. Catalase-less M. aeruginosa strains are even vulnerable to low light intensity in freshwater environments with strong ultraviolet radiation. However, they can continuously grow with the help of various defense genes (e.g., egtBD, cruA, and mysABCD) and associated bacteria. The strong defense strategies against biological threats (e.g., antagonistic bacteria, protozoa, and cyanophages) are attributed to dense exopolysaccharide (EPS)-mediated aggregate formation with efficient buoyancy and the secondary metabolites of M. aeruginosa cells. Our review with extensive genome analysis suggests that the ecological vulnerability of M. aeruginosa cells can be overcome by diverse genotypes, secondary defense metabolites, reinforced EPS, and associated bacteria.

Citations

Citations to this article as recorded by  
  • Rapid and selective disruption of photosystem I in toxic cyanobacteria protects aquatic ecosystem health
    Wonjae Kim, Yerim Park, Yongjun Son, Nayeon Yoo, Eui-Hwan Chung, Woojun Park
    Journal of Hazardous Materials.2026; 501: 140736.     CrossRef
  • Cyanophage Infections in a Sponge Intracellular Cyanobacterial Symbiont
    Tzipora Peretz, Esther Cattan‐Tsaushu, Chiara Conti, Benyamin Rosental, Laura Steindler, Sarit Avrani
    Environmental Microbiology.2025;[Epub]     CrossRef
  • Public goods-mediated bacterial interplay in aquatic ecosystems
    Yerim Park, Wonjae Kim, Jihye Bae, Woojun Park
    Water Research.2025; 287: 124310.     CrossRef
  • Horizontal Gene Transfer and Recombination in Cyanobacteriota
    Devaki Bhaya, Gabriel Birzu, Eduardo P.C. Rocha
    Annual Review of Microbiology .2025; 79(1): 685.     CrossRef
Journal Articles
Saxibacter everestensis gen. nov., sp. nov., A Novel Member of the Family Brevibacteriaceae, Isolated from the North Slope of Mount Everest
Mao Tian, Shiyu Wu, Wei Zhang, Gaosen Zhang, Xue Yu, Yujie Wu, Puchao Jia, Binglin Zhang, Tuo Chen, Guangxiu Liu
J. Microbiol. 2024;62(4):277-284.   Published online March 6, 2024
DOI: https://doi.org/10.1007/s12275-024-00108-1
  • 454 View
  • 13 Download
AbstractAbstract PDF
We isolated and analyzed a novel, Gram-stain-positive, aerobic, rod-shaped, non-motile actinobacterium, designated as strain ZFBP1038(T), from rock sampled on the north slope of Mount Everest. The growth requirements of this strain were 10-37 °C, pH 4-10, and 0-6% (w/v) NaCl. The sole respiratory quinone was MK-9, and the major fatty acids were anteiso-C(15:0) and iso-C(17:0). Peptidoglycan containing meso-diaminopimelic acid, ribose, and glucose were the major cell wall sugars, while polar lipids included diphosphatidyl glycerol, phosphatidyl glycerol, an unidentified phospholipid, and an unidentified glycolipid. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain ZFBP1038(T) has the highest similarity with Spelaeicoccus albus DSM 26341( T) (96.02%). ZFBP1038(T) formed a distinct monophyletic clade within the family Brevibacteriaceae and was distantly related to the genus Spelaeicoccus. The G + C content of strain ZFBP1038(T) was 63.65 mol% and the genome size was 4.05 Mb. Digital DNA-DNA hybridization, average nucleotide identity, and average amino acid identity values between the genomes of strain ZFBP1038(T) and representative reference strains were 19.3-25.2, 68.0-71.0, and 52.8-60.1%, respectively. Phylogenetic, phenotypic, and chemotaxonomic characteristics as well as comparative genome analyses suggested that strain ZFBP1038(T) represents a novel species of a new genus, for which the name Saxibacter gen. nov., sp. nov. was assigned with the type strain Saxibacter everestensis ZFBP1038(T) (= EE 014( T) = GDMCC 1.3024( T) = JCM 35335( T)).
Impact of Elevational Gradients and Chemical Parameters on Changes in Soil Bacterial Diversity Under Semiarid Mountain Region
Salman Khan , Chun Han , Awais Iqbal , Chao Guan , Changming Zhao
J. Microbiol. 2023;61(10):903-915.   Published online November 23, 2023
DOI: https://doi.org/10.1007/s12275-023-00085-x
  • 295 View
  • 0 Download
  • 1 Web of Science
  • 1 Crossref
AbstractAbstract PDF
Elevation gradients, often regarded as “natural experiments or laboratories”, can be used to study changes in the distribution of microbial diversity related to changes in environmental conditions that typically occur over small geographical scales. We obtained bacterial sequences using MiSeq sequencing and clustered them into operational taxonomic units (OTUs). The total number of reads obtained by the bacterial 16S rRNA sequencing analysis was 1,090,555, with an average of approximately 45,439 reads per sample collected from various elevations. The current study observed inconsistent bacterial diversity patterns in samples from the lowest to highest elevations. 983 OTUs were found common among all the elevations. The most unique OTUs were found in the soil sample from elevation_2, followed by elevation_1. Soil sample collected at elevation_6 had the least unique OTUs. Actinobacteria, Protobacteria, Chloroflexi were found most abundant bacterial phyla in current study. Ammonium nitrogen ( NH4 +-N), and total phosphate (TP) are the main factors influencing bacterial diversity at elevations_ 1. pH was the main factor influencing the bacterial diversity at elevations_2, elevation_3 and elevation_4. Our results provide new visions on forming and maintaining soil microbial diversity along an elevational gradient and have implications for microbial responses to environmental change in semiarid mountain ecosystems.

Citations

Citations to this article as recorded by  
  • Distribution patterns of herbaceous rhizosphere bacterial and fungal diversities and their influencing factors along the elevational gradient in mountain ecosystems
    Yuhang Wang, Kaiyang Qiu, Wangsuo Liu, Yanju Guo, Yi Yang, Jianping Li, Hongmei Wang, Jingjing Zhang, Panxing He, Yingzhong Xie
    Applied Soil Ecology.2026; 217: 106573.     CrossRef
Quantitative Analysis of RNA Polymerase Slippages for Production of P3N‑PIPO Trans‑frame Fusion Proteins in Potyvirids
Dongjin Choi , Yoonsoo Hahn
J. Microbiol. 2023;61(10):917-927.   Published online October 16, 2023
DOI: https://doi.org/10.1007/s12275-023-00083-z
  • 391 View
  • 1 Download
  • 6 Web of Science
  • 6 Crossref
AbstractAbstract PDF
Potyvirids, members of the family Potyviridae, produce the P3N-PIPO protein, which is crucial for the cell-to-cell transport of viral genomic RNAs. The production of P3N-PIPO requires an adenine (A) insertion caused by RNA polymerase slippage at a conserved GAA AAA A ( GA6) sequence preceding the PIPO open reading frame. Presently, the slippage rate of RNA polymerase has been estimated in only a few potyvirids, ranging from 0.8 to 2.1%. In this study, we analyzed publicly available plant RNA-seq data and identified 19 genome contigs from 13 distinct potyvirids. We further investigated the RNA polymerase slippage rates at the GA6 motif. Our analysis revealed that the frequency of the A insertion variant ranges from 0.53 to 4.07% in 11 potyviruses (genus Potyvirus). For the two macluraviruses (genus Macluravirus), the frequency of the A insertion variant was found to be 0.72% and 10.96% respectively. Notably, the estimated RNA polymerase slippage rates for 12 out of the 13 investigated potyvirids were reported for the first time in this study. Our findings underscore the value of plant RNA-seq data for quantitative analysis of potyvirid genome variants, specifically at the GA6 slippage site, and contribute to a more comprehensive understanding of the RNA polymerase slippage phenomenon in potyvirids.

Citations

Citations to this article as recorded by  
  • Discovery of novel tepovirus genomes with a nucleic acid-binding protein homolog by systematic analysis of plant transcriptome data
    Dongjin Choi, Hyerin Park, Seungwoo Baek, Myeung Seok Choi, Sylvain Legay, Gea Guerriero, Jean-François Hausman, Yoonsoo Hahn
    Acta Virologica.2025;[Epub]     CrossRef
  • Expanding the diversity of Celavirus, the most divergent genus in the family Potyviridae
    Myeung Seok Choi, Yoonsoo Hahn
    Virus Genes.2025; 61(6): 758.     CrossRef
  • Expansion of the genus Bevemovirus: Novel genome discovery and evidence for virus–host co-segregation
    Seungwoo Baek, Yoonsoo Hahn, Sung Chul Lee
    Gene.2025; 962: 149573.     CrossRef
  • Annexin D1 promotes potyvirus infection through interaction with nuclear inclusion protein b and Ca2+-dependent phosphorylation
    De-Jie Cheng, Xin-Yang Chen, Carlos Kwesi Tettey, Song-Yu Jiang, Jun Jiang, Cheng-Wu Zou, Hai-Tao Cui, Yan-Ping Tian, Xiang-Dong Li
    Plant Physiology.2025;[Epub]     CrossRef
  • Potyviral Helper-Component Protease: Multifaced Functions and Interactions with Host Proteins
    Veronika Hýsková, Kateřina Bělonožníková, Josef Chmelík, Hana Hoffmeisterová, Noemi Čeřovská, Tomáš Moravec, Helena Ryšlavá
    Plants.2024; 13(9): 1236.     CrossRef
  • Reconceptualizing transcriptional slippage in plant RNA viruses
    Adrian A. Valli, María Luisa Domingo-Calap, Alfonso González de Prádena, Juan Antonio García, Hongguang Cui, Cécile Desbiez, Juan José López-Moya, Shou-Wei Ding, Andrew Firth
    mBio.2024;[Epub]     CrossRef
Development of a Novel D‑Lactic Acid Production Platform Based on Lactobacillus saerimneri TBRC 5746
Kitisak Sansatchanon , Pipat Sudying , Peerada Promdonkoy , Yutthana Kingcha , Wonnop Visessanguan , Sutipa Tanapongpipat , Weerawat Runguphan , Kanokarn Kocharin
J. Microbiol. 2023;61(9):853-863.   Published online September 14, 2023
DOI: https://doi.org/10.1007/s12275-023-00077-x
  • 464 View
  • 0 Download
  • 6 Web of Science
  • 6 Crossref
AbstractAbstract PDF
D-Lactic acid is a chiral, three-carbon organic acid, that bolsters the thermostability of polylactic acid. In this study, we developed a microbial production platform for the high-titer production of D-lactic acid. We screened 600 isolates of lactic acid bacteria (LAB) and identified twelve strains that exclusively produced D-lactic acid in high titers. Of these strains, Lactobacillus saerimneri TBRC 5746 was selected for further development because of its homofermentative metabolism. We investigated the effects of high temperature and the use of cheap, renewable carbon sources on lactic acid production and observed a titer of 99.4 g/L and a yield of 0.90 g/g glucose (90% of the theoretical yield). However, we also observed L-lactic acid production, which reduced the product’s optical purity. We then used CRISPR/dCas9-assisted transcriptional repression to repress the two Lldh genes in the genome of L. saerimneri TBRC 5746, resulting in a 38% increase in D-lactic acid production and an improvement in optical purity. This is the first demonstration of CRISPR/dCas9-assisted transcriptional repression in this microbial host and represents progress toward efficient microbial production of D-lactic acid.

Citations

Citations to this article as recorded by  
  • Converting a D-/L lactic acid bacteria to its d-type counterpart via a combined chemical mutagenesis and biosensor screening method, and its application in lignocellulosic biorefinery
    Xingwang Ma, Kang Yan, Yuwei Zhang, Xiaoyu Xie, Shujie Zou, Yuanyuan Sha, Rui Zhai, Zhaoxian Xu, Mingjie Jin
    Bioresource Technology.2025; 428: 132471.     CrossRef
  • LigiLactobacillus saerimneri M-11 as a Promising Mucosal Delivery Vector for Chickens: Genomic Insights and Discriminative Modulation of Dendritic Cell Activation
    Sunting Ma, Haoran Qin, Shuanglin Guo, Lei Zhang, Rong Chen, Wei Ouyang, Bin Xu, Zhenzhen Zhang, Qiyan Xiong, Xing Xie, Zhixin Feng
    Veterinary Sciences.2025; 12(12): 1204.     CrossRef
  • Industrial–scale production of various bio–commodities by engineered microbial cell factories: Strategies of engineering in microbial robustness
    Ju-Hyeong Jung, Vinoth Kumar Ponnusamy, Gopalakrishnan Kumar, Bartłomiej Igliński, Vinod Kumar, Grzegorz Piechota
    Chemical Engineering Journal.2024; 502: 157679.     CrossRef
  • Microbial Cell Factories: Biodiversity, Pathway Construction, Robustness, and Industrial Applicability
    Rida Chaudhary, Ali Nawaz, Mireille Fouillaud, Laurent Dufossé, Ikram ul Haq, Hamid Mukhtar
    Microbiology Research.2024; 15(1): 247.     CrossRef
  • Adaptive Evolution for the Efficient Production of High-Quality d-Lactic Acid Using Engineered Klebsiella pneumoniae
    Bo Jiang, Jiezheng Liu, Jingnan Wang, Guang Zhao, Zhe Zhao
    Microorganisms.2024; 12(6): 1167.     CrossRef
  • Enhancing D-lactic acid production from non-detoxified corn stover hydrolysate via innovative F127-IEA hydrogel-mediated immobilization of Lactobacillus bulgaricus T15
    Yuhan Zheng, Feiyang Sun, Siyi Liu, Gang Wang, Huan Chen, Yongxin Guo, Xiufeng Wang, Maia Lia Escobar Bonora, Sitong Zhang, Yanli Li, Guang Chen
    Frontiers in Microbiology.2024;[Epub]     CrossRef
Metformin Regulates Gut Microbiota Abundance to Suppress M2 Skewing of Macrophages and Colorectal Tumorigenesis in Mice
Linfeng Fan , Xiangfu Zeng , Guofeng Xu
J. Microbiol. 2023;61(1):109-120.   Published online January 26, 2023
DOI: https://doi.org/10.1007/s12275-022-00010-8
  • 373 View
  • 0 Download
  • 9 Web of Science
  • 6 Crossref
AbstractAbstract PDF
The correlation of imbalanced gut microbiota with the onset and progression of colorectal cancer (CRC) has become clear. This work investigates the effect of metformin on gut microbiota and genesis of CRC in mice. Human fecal samples were collected from healthy control (HC) donors and CRC patients. Compared to HC donors, CRC patients had reduced abundance of gut microbiota; however, they had increased abundance of detrimental Bacteroidetes. Mice were injected with azomethane (AOM) to induce colorectal tumorigenesis models. Treatment of CRC patients-sourced fecal microbiota promoted tumorigenesis, and it increased the expression of Ki67, β-catenin, COX-2, and Cyclin D1 in mouse colon tissues. Further treatment of metformin blocked the colorectal tumorigenesis in mice. Fecal microbiota from the metformin-treated mice was collected, which showed decreased Bacteroidetes abundance and suppressed AOM-induced colorectal tumorigenesis in mice as well. Moreover, the metformin- modified microbiota promoted the M1 macrophage-related markers IL-6 and iNOS but suppressed the M2 macrophage-related markers IL-4R and Arg1 in mouse colon tissues. In conclusion, this study suggests that metformin-mediated gut microbiota alteration suppresses macrophage M2 polarization to block colorectal tumorigenesis.

Citations

Citations to this article as recorded by  
  • Metformin alleviates colitis-associated colorectal cancer via inhibition of the TLR4/MyD88/NFκB/MAPK pathway and macrophage M2 polarization
    Xueying Lai, Bin Liu, Yu Wan, Ping Zhou, Wanjun Li, Wei Hu, Wei Gong
    International Immunopharmacology.2025; 144: 113683.     CrossRef
  • Metformin as an immunomodulatory agent in enhancing head and neck squamous cell carcinoma therapies
    Wenting Li, Nanshu Liu, Mingwei Chen, Dongjuan Liu, Sai Liu
    Biochimica et Biophysica Acta (BBA) - Reviews on Cancer.2025; 1880(2): 189262.     CrossRef
  • Intestinal dysbiosis and colorectal cancer
    Ziran Kang, Shanshan Jiang, Jing-Yuan Fang, Huimin Chen
    Chinese Medical Journal.2025; 138(11): 1266.     CrossRef
  • Metformin induces diarrhea in mice under over-eating conditions
    Kotomi Chikama, Hiroshi Takemroi, Momoka Mizoguchi, Saho Furukawa, Koutarou Terada, Masafumi Ito, Hirotsugu Hirano, Takanori Miura, Koichi Doi, Megumi Horiya, Takehiro Kato, Daisuke Yabe, Takashi Shibata
    Diabetology International.2025; 16(3): 568.     CrossRef
  • Clinical efficacy of metformin in familial adenomatous polyposis and the effect of intestinal flora
    Linxin Zhou, Linfu Zheng, Binbin Xu, Zhou Ye, Dazhou Li, Wen Wang
    Orphanet Journal of Rare Diseases.2024;[Epub]     CrossRef
  • An AMPK agonist suppresses the progress of colorectal cancer by regulating the polarization of TAM to M1 through inhibition of HIF-1α and mTOR signal pathway
    Yuanyuan Cao, Mingyi Wo, Chan Xu, Xianming Fei, Juan Jin, Zhiming Shan
    Journal of Cancer Research and Therapeutics.2023; 19(6): 1560.     CrossRef
Characteristic alterations of gut microbiota in uncontrolled gout
Asad ul-Haq , Kyung-Ann Lee , Hoonhee Seo , Sukyung Kim , Sujin Jo , Kyung Min Ko , Su-Jin Moon , Yun Sung Kim , Jung Ran Choi , Ho-Yeon Song , Hyun-Sook Kim
J. Microbiol. 2022;60(12):1178-1190.   Published online November 24, 2022
DOI: https://doi.org/10.1007/s12275-022-2416-1
  • 480 View
  • 3 Download
  • 16 Web of Science
  • 16 Crossref
AbstractAbstract PDF
Microbiome research has been on the rise recently for a more in-depth understanding of gout. Meanwhile, there is a need to understand the gut microbiome related to uric acid-lowering drug resistance. In this study, 16S rRNA gene-based microbiota analysis was performed for a total of 65 stool samples from 17 healthy controls and 48 febuxostat-treated gout patients (including 28 controlled subjects with decreased uric acid levels and 20 uncontrolled subjects with non-reduced uric acid levels). Alpha diversity of bacterial community decreased in the healthy control, controlled, and uncontrolled groups. In the case of beta diversity, the bacterial community was significantly different among groups (healthy control, controlled, and uncontrolled groups). Taxonomic biomarker analysis revealed the increased population of g-Bifidobacterium in healthy controls and g-Prevotella in uncontrolled patients. PCR further confirmed this result at the species level. Additionally, functional metagenomics predictions led to the exploration of various functional biomarkers, including purine metabolism. The results of this study can serve as a basis for developing potential new strategies for diagnosing and treating gout from microbiome prospects.

Citations

Citations to this article as recorded by  
  • Characteristics of skin microbiome associated with disease severity in systemic sclerosis
    Kyung-Ann Lee, Asad Ul-Haq, Hoonhee Seo, Sujin Jo, Sukyung Kim, Ho-Yeon Song, Hyun-Sook Kim
    Journal of Microbiology.2025; 63(1): e:2409018.     CrossRef
  • Habitual coarse grain intake, gut microbiota, and hyperuricemia in individuals with or at risk of metabolic syndrome: A post-hoc analysis
    Juan He, Yifei He, Junqi Li, Guoqing Ma, Yunfeng Li, Jiawen Xie, Chen He, Xinran Feng, Kaizhen Jia, Wei Li, Menghan Wang, Amei Tang, Tian Tian, Xia Liao, Weimin Li, Feng Yan, Ying Zhang, Xiaoxiao Cao, Yuelang Zhang, Nan Yang, Xin Liu, Qian Wang
    Nutrition, Metabolism and Cardiovascular Diseases.2025; 35(10): 104126.     CrossRef
  • Microbiome therapeutic PMC72 through reverse translational research in gout
    Mohammed Solayman Hossain, Hoonhee Seo, Kyung-Ann Lee, Asad ul-Haq, Sukyung Kim, Sujin Jo, Md Abdur Rahim, Hanieh Tajdozian, Fatemeh Ghorbanian, Youjin Yoon, Indrajeet Barman, Md Sarower Hossen Shuvo, Hyun-Sook Kim, Ho-Yeon Song
    Journal of Microbiology.2025; 63(5): e2501002.     CrossRef
  • Interpretive prediction of hyperuricemia and gout patients via machine learning analysis of human gut microbiome
    Jia-Wei Tang, Alfred Chin Yen Tay, Liang Wang
    BMC Microbiology.2025;[Epub]     CrossRef
  • Hyperuricemia and the gut microbiota: current research hotspots and future trends
    Jingjing Yang, Jing Chen, Dingxiang Li, Qin Wu, Yanan Zhang, Yujia Li, Yihui Deng
    Frontiers in Microbiology.2025;[Epub]     CrossRef
  • Different Prostatic Tissue Microbiomes between High- and Low-Grade Prostate Cancer Pathogenesis
    Jae Heon Kim, Hoonhee Seo, Sukyung Kim, Md Abdur Rahim, Sujin Jo, Indrajeet Barman, Hanieh Tajdozian, Faezeh Sarafraz, Ho-Yeon Song, Yun Seob Song
    International Journal of Molecular Sciences.2024; 25(16): 8943.     CrossRef
  • Reassessing Gout Management through the Lens of Gut Microbiota
    Jean Demarquoy, Oumaima Dehmej
    Applied Microbiology.2024; 4(2): 824.     CrossRef
  • Changes in gut microbiota structure and function in gout patients
    Feiyan Zhao, Zhixin Zhao, Dafu Man, Zhihong Sun, Ning Tie, Hongbin Li, Heping Zhang
    Food Bioscience.2023; 54: 102912.     CrossRef
  • Effect of a Novel Handheld Photobiomodulation Therapy Device in the Management of Chemoradiation Therapy-Induced Oral Mucositis in Head and Neck Cancer Patients: A Case Series Study
    In-Young Jo, Hyung-Kwon Byeon, Myung-Jin Ban, Jae-Hong Park, Sang-Cheol Lee, Yong Kyun Won, Yun-Su Eun, Jae-Yun Kim, Na-Gyeong Yang, Sul-Hee Lee, Pyeongan Lee, Nam-Hun Heo, Sujin Jo, Hoonhee Seo, Sukyung Kim, Ho-Yeon Song, Jung-Eun Kim
    Photonics.2023; 10(3): 241.     CrossRef
  • New drug targets for the treatment of gout arthritis: what’s new?
    Tiago H. Zaninelli, Geovana Martelossi-Cebinelli, Telma Saraiva-Santos, Sergio M. Borghi, Victor Fattori, Rubia Casagrande, Waldiceu A. Verri
    Expert Opinion on Therapeutic Targets.2023; 27(8): 679.     CrossRef
  • A dynamics association study of gut barrier and microbiota in hyperuricemia
    Qiulan Lv, Jun Zhou, Changyao Wang, Xiaomin Yang, Yafei Han, Quan Zhou, Ruyong Yao, Aihua Sui
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Biochemical Recurrence in Prostate Cancer Is Associated with the Composition of Lactobacillus: Microbiome Analysis of Prostatic Tissue
    Jae Heon Kim, Hoonhee Seo, Sukyung Kim, Asad Ul-Haq, Md Abdur Rahim, Sujin Jo, Ho-Yeon Song, Yun Seob Song
    International Journal of Molecular Sciences.2023; 24(13): 10423.     CrossRef
  • Remote effects of kidney drug transporter OAT1 on gut microbiome composition and urate homeostasis
    Vladimir S. Ermakov, Jeffry C. Granados, Sanjay K. Nigam
    JCI Insight.2023;[Epub]     CrossRef
  • Causal Relationship between Gut Microbiota and Gout: A Two-Sample Mendelian Randomization Study
    Mengna Wang, Jiayao Fan, Zhaohui Huang, Dan Zhou, Xue Wang
    Nutrients.2023; 15(19): 4260.     CrossRef
  • Emerging Urate-Lowering Drugs and Pharmacologic Treatment Strategies for Gout: A Narrative Review
    Robert Terkeltaub
    Drugs.2023; 83(16): 1501.     CrossRef
  • Characterization of Fecal Microbiomes of Osteoporotic Patients in Korea
    Asad Ul-Haq, Hoonhee Seo, Sujin Jo, Hyuna Park, Sukyung Kim, Youngkyoung Lee, Saebim Lee, Je Hoon Jeong, Ho‑Yeon Song
    Polish Journal of Microbiology.2022; 71(4): 601.     CrossRef
The efficacy of a 2,4-diaminoquinazoline compound as an intranasal vaccine adjuvant to protect against influenza A virus infection in vivo
Kyungseob Noh , Eun Ju Jeong , Timothy An , Jin Soo Shin , Hyejin Kim , Soo Bong Han , Meehyein Kim
J. Microbiol. 2022;60(5):550-559.   Published online April 18, 2022
DOI: https://doi.org/10.1007/s12275-022-1661-7
  • 475 View
  • 1 Download
  • 5 Web of Science
  • 6 Crossref
AbstractAbstract PDF
Adjuvants are substances added to vaccines to enhance antigen- specific immune responses or to protect antigens from rapid elimination. As pattern recognition receptors, Toll-like receptors 7 (TLR7) and 8 (TLR8) activate the innate immune system by sensing endosomal single-stranded RNA of RNA viruses. Here, we investigated if a 2,4-diaminoquinazolinebased TLR7/8 agonist, (S)-3-((2-amino-8-fluoroquinazolin- 4-yl)amino)hexan-1-ol (named compound 31), could be used as an adjuvant to enhance the serological and mucosal immunity of an inactivated influenza A virus vaccine. The compound induced the production of proinflammatory cytokines in macrophages. In a dose-response analysis, intranasal administration of 1 μg compound 31 together with an inactivated vaccine (0.5 μg) to mice not only enhanced virus-specific IgG and IgA production but also neutralized influenza A virus with statistical significance. Notably, in a virus-challenge model, the combination of the vaccine and compound 31 alleviated viral infection-mediated loss of body weight and increased survival rates by 40% compared with vaccine only-treated mice. We suggest that compound 31 is a promising lead compound for developing mucosal vaccine adjuvants to protect against respiratory RNA viruses such as influenza viruses and potentially coronaviruses.

Citations

Citations to this article as recorded by  
  • Efflux-Enhanced Imidazoquinolines To Exploit Chemoresistance
    Muhammad Haroon, Sharmin Sultana, Seyedeh A. Najibi, Emily T. Wang, Abbey Michaelson, Pranto S. M. Al Muied, Amy E. Nielsen, Rock J. Mancini
    ACS Omega.2025; 10(12): 12319.     CrossRef
  • Synthetic Cathepsin B Sensitive Adjuvant‐Peptide Conjugates to Target Intracellular Toll‐Like Receptors 7 and 8
    Marjolein M. E. Isendoorn, Giulia Castello, Nico J. Meeuwenoord, Martijn Verdoes, Jeroen D. C. Codée, Ferry Ossendorp, Dmitri V. Filippov
    ChemistryEurope.2025;[Epub]     CrossRef
  • Design, Synthesis, and Biological Evaluation of New 2,6,7-Substituted Purine Derivatives as Toll-like Receptor 7 Agonists for Intranasal Vaccine Adjuvants
    Morgan Kim, Kyungseob Noh, Pyeongkeun Kim, Jae Ho Kim, Byeong Wook Choi, Ravi Singh, Jun-Ho Choi, Soo Bong Han, Seong Soon Kim, Eun-Young Lee, Myung Ae Bae, Daeho Shin, Meehyein Kim, Jin Hee Ahn
    Journal of Medicinal Chemistry.2024; 67(11): 9389.     CrossRef
  • Evaluation of Antiviral Activity of Gemcitabine Derivatives against Influenza Virus and Severe Acute Respiratory Syndrome Coronavirus 2
    Hyeon-Min Cha, Uk-Il Kim, Soo Bin Ahn, Myoung Kyu Lee, Haemi Lee, Hyungtae Bang, Yejin Jang, Seong Soon Kim, Myung Ae Bae, Kyungjin Kim, Meehyein Kim
    ACS Infectious Diseases.2023; 9(4): 1033.     CrossRef
  • Identification of broad-spectrum neutralizing antibodies against influenza A virus and evaluation of their prophylactic efficacy in mice
    Sumin Son, Soo Bin Ahn, Geonyeong Kim, Yejin Jang, Chunkyu Ko, Meehyein Kim, Sang Jick Kim
    Antiviral Research.2023; 213: 105591.     CrossRef
  • Inhibition of KIF20A suppresses the replication of influenza A virus by inhibiting viral entry
    Hoyeon Jeon, Younghyun Lim, In-Gu Lee, Dong-In Kim, Keun Pil Kim, So-Hee Hong, Jeongkyu Kim, Youn-Sang Jung, Young-Jin Seo
    Journal of Microbiology.2022; 60(11): 1113.     CrossRef
Description of Polaribacter batillariae sp. nov., Polaribacter cellanae sp. nov., and Polaribacter pectinis sp. nov., novel bacteria isolated from the gut of three types of South Korean shellfish
Su-Won Jeong , Jeong Eun Han , June-Young Lee , Ji-Ho Yoo , Do-Yeon Kim , In Chul Jeong , Jee-Won Choi , Yun-Seok Jeong , Jae-Yun Lee , So-Yeon Lee , Euon Jung Tak , Hojun Sung , Hyun Sik Kim , Pil Soo Kim , Dong-Wook Hyun , Jin-Woo Bae
J. Microbiol. 2022;60(6):576-584.   Published online April 18, 2022
DOI: https://doi.org/10.1007/s12275-022-1604-3
  • 422 View
  • 0 Download
  • 8 Web of Science
  • 9 Crossref
AbstractAbstract PDF
Three aerobic, Gram-negative, and rod-shaped bacterial strains, designated strains G4M1T, SM13T, and L12M9T, were isolated from the gut of Batillaria multiformis, Cellana toreuma, and Patinopecten yessoensis collected from the Yellow Sea in South Korea. All the strains grew optimally at 25°C, in the presence of 2% (w/v) NaCl, and at pH 7. These three strains, which belonged to the genus Polaribacter in the family Flavobacteriaceae, shared < 98.8% in 16S rRNA gene sequence and < 86.68% in whole-genome sequence with each other. Compared with the type strains of Polaribacter, isolates showed the highest sequence similarity to P. haliotis KCTC 52418T (< 98.68%), followed by P. litorisediminis KCTC 52500T (< 98.13%). All the strains contained MK-6 as their predominant menaquinone and iso-C15:0 as their major fatty acid. Moreover, all the strains had phosphatidylethanolamine as their polar lipid component. In addition, strain G4M1T had two unidentified lipids and three unidentified aminolipids, strain SM13T had three unidentified lipids and three unidentified aminolipids, and strain L12M9T had three unidentified lipids and one unidentified aminolipid. The DNA G + C contents of strains G4M1T, SM13T, and L12M9T were 31.0, 30.4, and 29.7 mol%, respectively. Based on phenotypic, phylogenetic, chemotaxonomic, and genotypic findings, strains G4M1T (= KCTC 82388T = DSM 112372T), SM13T (= KCTC 82389T = DSM 112373T), and L12M9T (= KCTC 62751T = DSM 112374T) were classified into the genus Polaribacter as the type strains of novel species, for which the names Polaribacter batillariae sp. nov., Polaribacter cellanae sp. nov., and Polaribacter pectinis sp. nov., respectively, have been proposed.

Citations

Citations to this article as recorded by  
  • Polaribacter uvawellassae sp. nov., a Member of the Family Flavobacteriaceae Isolated from Mud Crab (Scylla serrata)
    W. M. Lakshani Anuradha Wanasinghe, Wang Xin, Yuan Siliang, Dongru Qiu
    Current Microbiology.2025;[Epub]     CrossRef
  • Isolation and characterization of Polaribacter sargassicola sp. nov. and Algibacter ulvanivorans sp. nov.: two novel species with ability to degrade algal polysaccharides
    Jin Li, Aihua Mao, Chao Peng, Linhui Li, Binghan Li, Lijuan Zhou, Yan Xu, Mingqi Zhong, Zhong Hu
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • The juvenile Antarctic whelk Neobuccinum eatoni maintains a specialized microbiome in its proboscis even in adulthood
    Emanuela Buschi, Michael Tangherlini, Marco Lo Martire, Cinzia Corinaldesi
    Polar Biology.2025;[Epub]     CrossRef
  • Unique skin microbiome: insights to understanding bacterial symbionts in octopuses
    Chelsea O. Bennice, Lauren E. Krausfeldt, W. Randy Brooks, Jose V. Lopez
    Frontiers in Marine Science.2024;[Epub]     CrossRef
  • An update on novel taxa and revised taxonomic status of bacteria isolated from aquatic host species described in 2022–2023
    Claire R. Burbick, Sara D. Lawhon, Brittany Bukouras, Giovanna Lazzerini, Erik Munson, Romney M. Humphries
    Journal of Clinical Microbiology.2024;[Epub]     CrossRef
  • Polaribacter ponticola sp. nov., isolated from seawater, reclassification of Polaribacter undariae as a later heterotypic synonym of Polaribacter sejongensis, and emended description of Polaribacter sejongensis Kim et al. 2013
    Ju Hye Baek, Mahrukh Butt, Dong Min Han, Jeong Min Kim, Seohui Choi, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Rhodobacteraceae are Prevalent and Ecologically Crucial Bacterial Members in Marine Biofloc Aquaculture
    Meora Rajeev, Jang-Cheon Cho
    Journal of Microbiology.2024; 62(11): 985.     CrossRef
  • Validation List no. 207. Valid publication of new names and new combinations effectively published outside the IJSEM
    Aharon Oren, George Garrity
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Nocardioides palaemonis sp. nov. and Tessaracoccus palaemonis sp. nov., isolated from the gastrointestinal tract of lake prawn
    Do-Yeon Kim, In-Chul Jeong, So-Yeon Lee, Yun-Seok Jeong, Jeong Eun Han, Euon Jung Tak, June-Young Lee, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
Antiviral effects of human placenta hydrolysate (Laennec) against SARS-CoV-2 in vitro and in the ferret model
Eun-Ha Kim , Young-il Kim , Seung-Gyu Jang , Minju Im , Kyeongsoo Jeong , Young Ki Choi , Hae-Jung Han
J. Microbiol. 2021;59(11):1056-1062.   Published online October 6, 2021
DOI: https://doi.org/10.1007/s12275-021-1367-2
  • 421 View
  • 0 Download
  • 9 Web of Science
  • 8 Crossref
AbstractAbstract PDF
The COVID-19 pandemic has caused unprecedented health, social, and economic crises worldwide. However, to date, there is an only a limited effective treatment for this disease. Human placenta hydrolysate (hPH) has previously been shown to be safe and to improve the health condition in patients with hyperferritinemia and COVID-19. In this study, we aimed to determine the antiviral effects of hPH against SARS-CoV-2 in vitro and in vivo models and compared with Remdesivir, an FDA-approved drug for COVID-19 treatment. To assess whether hPH inhibited SARS-CoV-2 replication, we determined the CC50, EC50, and selective index (SI) in Vero cells by infection with a SARS-CoV-2 at an MOI of 0.01. Further, groups of ferrets infected with 105.8 TCID50/ml of SARS-CoV-2 and treated with hPH at 2, 4, 6 dpi, and compared their clinical manifestation and virus titers in respiratory tracts with PBS control-treated group. The mRNA expression of immunerelated cytokines was determined by qRT-PCR. hPH treatment attenuated virus replication in a dose-dependent manner in vitro. In a ferret infection study, treatment with hPH resulted in minimal bodyweight loss and attenuated virus replication in the nasal wash, turbinates, and lungs of infected ferrets. In addition, qRT-PCR results revealed that the hPH treatment remarkably upregulated the gene expression of type I (IFN-α and IFN-β) and II (IFN-γ) IFNs in SARS-CoV-2 infected ferrets. Our data collectively suggest that hPH has antiviral efficacy against SARS-CoV-2 and might be a promising therapeutic agent for the treatment of SARS-CoV-2 infection.

Citations

Citations to this article as recorded by  
  • Development and validation of a novel RP-HPLC method for determination of Remdesivir: Investigation of the greenness for the proposed method
    Karthika Paul, B.H. Jaswanth Gowda, R.S. Chandan
    Results in Chemistry.2025; 16: 102382.     CrossRef
  • Perinatal Hypoxia and Immune System Activation in Schizophrenia Pathogenesis: Critical Considerations During COVID-19 Pandemic
    I Kawikova, K Hakenova, M Lebedeva, L Kleteckova, L Jakob, V Spicka, L Wen, F Spaniel, K Vales
    Physiological Research.2024; : S615.     CrossRef
  • Human Placenta Extract (HPH) Suppresses Inflammatory Responses in TNF-α/IFN-γ-Stimulated HaCaT Cells and a DNCB Atopic Dermatitis (AD)-Like Mouse Model
    Jung Ok Lee, Youna Jang, A Yeon Park, Jung Min Lee, Kyeongsoo Jeong, So-Hyun Jeon, Hui Jin, Minju Im, Jae-Won Kim, Beom Joon Kim
    Journal of Microbiology and Biotechnology.2024; 34(10): 1969.     CrossRef
  • Systematic analysis of the pharmacology of standardized extracts of human placenta
    T. E. Bogacheva, I. Yu. Torshin, O. A. Gromova
    Pharmacokinetics and Pharmacodynamics.2024; (4): 3.     CrossRef
  • Distinctive Combinations of RBD Mutations Contribute to Antibody Evasion in the Case of the SARS-CoV-2 Beta Variant
    Tae-Hun Kim, Sojung Bae, Sunggeun Goo, Jinjong Myoung
    Journal of Microbiology and Biotechnology.2023; 33(12): 1587.     CrossRef
  • Current state-of-the-art and potential future therapeutic drugs against COVID-19
    Ailong Sha, Yi Liu, Haiyan Hao
    Frontiers in Cell and Developmental Biology.2023;[Epub]     CrossRef
  • SARS-CoV-2 Aerosol and Intranasal Exposure Models in Ferrets
    Elizabeth E. Zumbrun, Samantha E. Zak, Eric D. Lee, Philip A. Bowling, Sara I. Ruiz, Xiankun Zeng, Jeffrey W. Koehler, Korey L. Delp, Russel R. Bakken, Shannon S. Hentschel, Holly A. Bloomfield, Keersten M. Ricks, Tamara L. Clements, April M. Babka, John
    Viruses.2023; 15(12): 2341.     CrossRef
  • Human placenta hydrolysates: from V.P. Filatov to the present day: Review
    Olga A. Gromova, Ivan Yu. Torshin, Alexander G. Chuchalin, Valeriy А. Maximov
    Terapevticheskii arkhiv.2022; 94(3): 434.     CrossRef
Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov., two novel species of the family Bacillaceae isolated from kimchi
Young Joon Oh , Joon Yong Kim , Seul Ki Lim , Min-Sung Kwon , Hak-Jong Choi
J. Microbiol. 2021;59(5):460-466.   Published online April 28, 2021
DOI: https://doi.org/10.1007/s12275-021-0513-1
  • 414 View
  • 0 Download
  • 1 Web of Science
  • 2 Crossref
AbstractAbstract PDF
To date, all species in the genus Salicibibacter have been isolated in Korean commercial kimchi. We aimed to describe the taxonomic characteristics of two strains, NKC5-3T and NKC21-4T, isolated from commercial kimchi collected from various regions in the Republic of Korea. Cells of these strains were rod-shaped, Gram-positive, aerobic, oxidase- and catalase- positive, non-motile, halophilic, and alkalitolerant. Both strains, unlike other species of the genus Salicibibacter, could not grow without NaCl. Strains NKC5-3T and NKC21-4T could tolerate up to 25.0% (w/v) NaCl (optimum 10%) and grow at pH 7.0–10.0 (optimum 8.5) and 8.0–9.0 (optimum 8.5), respectively; they showed 97.1% 16S rRNA gene sequence similarity to each other and were most closely related to S. kimchii NKC1-1T (97.0% and 96.8% similarity, respectively). The genome of strain NKC5-3T was nearly 4.6 Mb in size, with 4,456 protein-coding sequences (CDSs), whereas NKC21-4T genome was nearly 3.9 Mb in size, with 3,717 CDSs. OrthoANI values between the novel strains and S. kimchii NKC1-1T were far lower than the species demarcation threshold. NKC5-3T and NKC21-4T clustered together to form branches that were distinct from the other Salicibibacter species. The major fatty acids in these strains were anteiso-C15:0 and anteiso-C17:0, and the predominant menaquinone was menaquinone-7. The polar lipids of NKC5-3T included diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), and five unidentified phospholipids (PL), and those of NKC21-4T included DPG, PG, seven unidentified PLs, and an unidentified lipid. Both isolates had DPG, which is the first case in the genus Salicibibacter. The genomic G + C content of strains NKC5-3T and NKC21-4T was 44.7 and 44.9 mol%, respectively. Based on phenotypic, genomic, phylogenetic, and chemotaxonomic analyses, strains NKC5-3T (= KACC 22040T = DSM 111417T) and NKC21-4T (= KACC 22041T = DSM 111418T) represent two novel species of the genus Salicibibacter, for which the names Salicibibacter cibarius sp. nov. and Salicibibacter cibi sp. nov. are proposed.

Citations

Citations to this article as recorded by  
  • In-silico study of molecular adaptations in halophilic Cas9
    Anisha Debnath, Aveepsa Sengupta, Sujata Rudrapal, Ashutosh Kumar, Mamta Rani
    Letters in Applied Microbiology.2025;[Epub]     CrossRef
  • Valid publication of new names and new combinations effectively published outside the IJSEM
    Aharon Oren, George M. Garrity
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
Effects of mycosubtilin homolog algicides from a marine bacterium, Bacillus sp. SY-1, against the harmful algal bloom species Cochlodinium polykrikoides
Seong-Yun Jeong , Hong-Joo Son
J. Microbiol. 2021;59(4):389-400.   Published online March 29, 2021
DOI: https://doi.org/10.1007/s12275-021-1086-8
  • 415 View
  • 0 Download
  • 17 Web of Science
  • 19 Crossref
AbstractAbstract PDF
The marine bacterium, Bacillus sp. SY-1, produced algicidal compounds that are notably active against the bloom-forming alga Cochlodinium polykrikoides. We isolated three algicidal compounds and identified these as mycosubtilins with molecular weights of 1056, 1070, and 1084 (designated MS 1056, 1070, and 1084, respectively), based on amino acid analyses and 1H, 13C, and two-dimensional nuclear magnetic resonance spectroscopy, including 1H-15N heteronuclear multiple bond correlation analysis. MS 1056 contains a β- amino acid residue with an alkyl side chain of C15, which has not previously been seen in known mycosubtilin families. MS 1056, 1070, and 1084 showed algicidal activities against C. polykrikoides with 6-h LC50 values of 2.3 ± 0.4, 0.8 ± 0.2, and 0.6 ± 0.1 μg/ml, respectively. These compounds also showed significant algicidal activities against other harmful algal bloom species. In contrast, MS 1084 showed no significant growth inhibitory effects against other organisms, including bacteria and microalgae, although does inhibit the growth of some fungi and yeasts. These observations imply that the algicidal bacterium Bacillus sp. SY-1 and its algicidal compounds could play an important role in regulating the onset and development of harmful algal blooms in natural environments.

Citations

Citations to this article as recorded by  
  • Bacillus amyloliquefaciens- modified clay for controlling harmful algal blooms in eutrophic aquaculture ponds
    Zaixing Wu, Zhiming Yu, Xiuxian Song, Kaiqin Jiang, Xihua Cao, Yongquan Yuan
    Frontiers in Microbiology.2025;[Epub]     CrossRef
  • Algicidal mechanism and algicidal active metabolites of Alteromonas abrolhosensis against harmful dinoflagellates Karenia mikimotoi
    Yang Jia, Jiazhan Lu, Jingxia Zhang, Yuyang Jin, Lei Ren, Hanqing Xu, Min Zhao, Zengling Ma
    Journal of Hazardous Materials.2025; 490: 137815.     CrossRef
  • Antimicrobial Activity of Bacillus Cyclic Lipopeptides and Their Role in the Host Adaptive Response to Changes in Environmental Conditions
    Natalia Markelova, Anastasia Chumak
    International Journal of Molecular Sciences.2025; 26(1): 336.     CrossRef
  • Algicidal effects of Fictibacillus sp. 5A8M on Margalefidinium polykrikoides through attachment and secretion of extracellular metabolites
    So-Ra Ko, Ve Van Le, Sang-Ah Lee, Seung Ho Baek, Chi-Yong Ahn
    Harmful Algae.2025; 142: 102794.     CrossRef
  • Algicidal Activity and Stability of a Potential Biological Control Agent Against Harmful Algal Blooms
    Jae Young Kim, Seong-Yun Jeong
    Journal of Environmental Science International.2025; 34(4): 195.     CrossRef
  • Algicidal activity and mechanism of novel Bacillamide a derivative against red tide algae Skeletonema costatum and Prorocentrum minimum
    Huili Li, Xiaoxue Li, Yi Liu, Ronglian Xing, Hongxia Zhang, Wenguang Jia, Lihong Chen, Rui Li, Zhen Yu, Zhihong Tang
    Pesticide Biochemistry and Physiology.2025; 210: 106379.     CrossRef
  • Warfare under the waves: a review of bacteria-derived algaecidal natural products
    Shuxin Yang, Spencer J. Williams, Myles Courtney, Laura Burchill
    Natural Product Reports.2025; 42(4): 681.     CrossRef
  • Algicidal Bacteria: A Sustainable Proposal to Control Microalgae in the Conservation and Restoration of Stone Cultural Heritage
    Isabel Calvo-Bayo, Fernando Bolívar-Galiano, Julio Romero-Noguera
    Sustainability.2025; 17(23): 10610.     CrossRef
  • Biological and Chemical Approaches for Controlling Harmful Microcystis Blooms
    Wonjae Kim, Yerim Park, Jaejoon Jung, Che Ok Jeon, Masanori Toyofuku, Jiyoung Lee, Woojun Park
    Journal of Microbiology.2024; 62(3): 249.     CrossRef
  • A Bacillus subtilis strain with efficient algaecide of Microcystis aeruginosa and degradation of microcystins
    Yuanyuan Chen, Fei Xiong, Ying Zhu, Dongdong Zhai, Hongyan Liu, Lin Zhang, Ming Xia
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Dinoflagellate–Bacteria Interactions: Physiology, Ecology, and Evolution
    Xiaohong Yang, Zijian Liu, Yanwen Zhang, Xinguo Shi, Zhen Wu
    Biology.2024; 13(8): 579.     CrossRef
  • Transcriptomics‐guided identification of an algicidal protease of the marine bacterium Kordia algicida OT‐1
    Kristy S. Syhapanha, David A. Russo, Yun Deng, Nils Meyer, Remington X. Poulin, Georg Pohnert
    MicrobiologyOpen.2023;[Epub]     CrossRef
  • Applications-oriented algicidal efficacy research and in-depth mechanism of a novel strain Brevibacillus sp. on Microcystis aeruginosa
    Fen Liu, Lei Qin, Shunni Zhu, Huanjun Chen, Akram Ali Nasser Mansoor Al-Haimi, Jin Xu, Weizheng Zhou, Zhongming Wang
    Environmental Pollution.2023; 330: 121812.     CrossRef
  • Algicidal Potential of the Endosymbiont Bacterial Consortium of the Seagrasses Enhalus acoroides and Thalassia hemprichii
    G I Setiabudi, I N D Prasetia, K L Antara, G S br. Sitepu, J M Amelia, M D K Maharani
    IOP Conference Series: Earth and Environmental Science.2023; 1224(1): 012039.     CrossRef
  • Algicidal substances of Brevibacillus laterosporus and their effect on red tide organisms
    Shanshan Liu, Zhiming Yu, Zaixing Wu, Xihua Cao, Ruihong Cheng, Xiuxian Song
    Frontiers in Marine Science.2023;[Epub]     CrossRef
  • Algicidal activity of a novel bacterium, Qipengyuania sp. 3-20A1M, against harmful Margalefidinium polykrikoides: Effects of its active compound
    So-Ra Ko, Ve Van Le, Ankita Srivastava, Mingyeong Kang, Hee-Mock Oh, Chi-Yong Ahn
    Marine Pollution Bulletin.2023; 186: 114397.     CrossRef
  • Review of Harmful Algal Blooms (HABs) Causing Marine Fish Kills: Toxicity and Mitigation
    Jae-Wook Oh, Suraj Shiv Charan Pushparaj, Manikandan Muthu, Judy Gopal
    Plants.2023; 12(23): 3936.     CrossRef
  • Algicidal Bacteria: A Review of Current Knowledge and Applications to Control Harmful Algal Blooms
    Kathryn J. Coyne, Yanfei Wang, Gretchen Johnson
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Isolation, identification of algicidal bacteria and contrastive study on algicidal properties against Microcystis aeruginosa
    Fen Liu, Shunni Zhu, Lei Qin, Pingzhong Feng, Jin Xu, Weizheng Zhou, Zhongming Wang
    Biochemical Engineering Journal.2022; 185: 108525.     CrossRef
The effect of the HRB linker of Newcastle disease virus fusion protein on the fusogenic activity
Yaqing Liu , Ying Liu , Yanan Huang , Hongling Wen , Li Zhao , Yanyan Song , Zhiyu Wang
J. Microbiol. 2021;59(5):513-521.   Published online March 29, 2021
DOI: https://doi.org/10.1007/s12275-021-0539-4
  • 367 View
  • 0 Download
  • 7 Web of Science
  • 7 Crossref
AbstractAbstract PDF
Newcastle disease, designated a class A disease of poultry by the Office international des epizooties (OIE), is an acute infection caused by Newcastle disease virus (NDV). The merging of the envelope of NDV with the membrane of a target host cell is the key step in the infection pathway, which is driven by the concerted action of two glycoproteins: haemagglutinin- neuraminidase (HN) and fusion (F) protein. When the HN protein binds to the host cell surface receptor, the F protein is activated to mediate fusion. The three-dimensional structure of the F protein has been reported to have low electron density between the DIII domain and the HRB domain, and this electron-poor region is defined as the HRB linker. To clarify the contributing role of the HRB linker in the NDV F protein-mediated fusion process, 6 single amino acid mutants were obtained by site-directed mutagenesis of the HRB linker. The expression of the mutants and their abilities to mediate fusion were analysed, and the key amino acids in the HRB linker were identified as L436, E439, I450, and S453, as they can modulate the fusion ability or expression of the active form to a certain extent. The data shed light on the crucial role of the F protein HRB linker in the acquisition of a normal fusogenic phenotype.

Citations

Citations to this article as recorded by  
  • Insights into the multifunctionality of viral glycoproteins F and HN in the lifecycle and pathogenesis of Newcastle disease virus: a systematic review
    Si Ma, Rongjing Xia, Wenjie Wu, Zhiqiang Duan
    Veterinary Research.2025;[Epub]     CrossRef
  • The key pathways and genes related to oncolytic Newcastle disease virus-induced phenotypic changes in ovarian cancer cells
    Wei Song, Yuan Yuan, Fangfang Cao, Huazheng Pan, Yaqing Liu
    Journal of Microbiology.2025; 63(4): e2411018.     CrossRef
  • Evaluation of Newcastle disease virus LaSota strain attenuated by codon pair deoptimization of the HN and F genes for in ovo vaccination
    Fatma Eldemery, Changbo Ou, Taejoong Kim, Stephen Spatz, John Dunn, Robert Silva, Qingzhong Yu
    Veterinary Microbiology.2023; 277: 109625.     CrossRef
  • Prevalence and Molecular Characterization of Bovine Parainfluenza Virus Type 3 in Cattle Herds in China
    Yunxin Ren, Cheng Tang, Hua Yue
    Animals.2023; 13(5): 793.     CrossRef
  • Direct interaction of the molecular chaperone GRP78/BiP with the Newcastle disease virus hemagglutinin-neuraminidase protein plays a vital role in viral attachment to and infection of culture cells
    Chenxin Han, Ziwei Xie, Yadi Lv, Dingxiang Liu, Ruiai Chen
    Frontiers in Immunology.2023;[Epub]     CrossRef
  • Adaptor complex-mediated trafficking of Newcastle disease virus fusion protein is regulated by the YLMY motif of its cytoplasmic tail
    Yawen Bu, Qingyuan Teng, Delan Feng, Rong Liang, Haoran Wang, Xuehui Zhang, Xiao Li, Wenfeng Jia, Jia Xue, Ye Zhao, Guozhong Zhang
    Virulence.2022; 13(1): 1849.     CrossRef
  • YLMY Tyrosine Residue within the Cytoplasmic Tail of Newcastle Disease Virus Fusion Protein Regulates Its Surface Expression to Modulate Viral Budding and Pathogenicity
    Yawen Bu, Qingyuan Teng, Delan Feng, Lu Sun, Jia Xue, Guozhong Zhang, Peter Pelka
    Microbiology Spectrum.2021;[Epub]     CrossRef
Role of melatonin in murine “restraint stress”-induced dysfunction of colonic microbiota
Rutao Lin , Zixu Wang , Jing Cao , Ting Gao , Yulan Dong , Yaoxing Chen
J. Microbiol. 2021;59(5):500-512.   Published online February 25, 2021
DOI: https://doi.org/10.1007/s12275-021-0305-7
  • 414 View
  • 0 Download
  • 17 Web of Science
  • 18 Crossref
AbstractAbstract PDF
Intestinal diseases caused by physiological stress have become a severe public health threat worldwide. Disturbances in the gut microbiota-host relationship have been associated with irritable bowel disease (IBD), while melatonin (MT) has antiinflammatory and antioxidant effects. The objective of this study was to investigate the mechanisms by which MT-mediated protection mitigated stress-induced intestinal microbiota dysbiosis and inflammation. We successfully established a murine restraint stress model with and without MT supplementation. Mice subjected to restraint stress had significantly elevated corticosterone (CORT) levels, decreased MT levels in their plasma, elevated colonic ROS levels and increased bacterial abundance, including Bacteroides and Tyzzerella, in their colon tract, which led to elevated expression of Toll-like receptor (TLR) 2/4, p-P65 and p-IκB. In contrast, supplementation with 20 mg/kg MT reversed the elevation of the plasma CORT levels, downregulated the colon ROS levels and inhibited the changes in the intestinal microbiota induced by restraint stress. These effects, in turn, inhibited the activities of TLR2 and TLR4, p-P65 and p-IκB, and decreased the inflammatory reaction induced by restraint stress. Our results suggested that MT may mitigate “restraint stress”-induced colonic microbiota dysbiosis and intestinal inflammation by inhibiting the activation of the NF-κB pathway.

Citations

Citations to this article as recorded by  
  • Impact of Sex, Gonadectomy, and Repeated Restraint Stress on Gut Microbiome in Mice
    Chahrazed Mekadim, Jakub Mrázek, Martin Vodička, Peter Ergang, Kateřina Olša Fliegerová, Tiziana Maria Mahayri, Kallayanee Chawengsaksophak, Jiří Pácha
    Molecular Neurobiology.2026;[Epub]     CrossRef
  • Tryptophan Attenuates Chronic Restraint Stress-Induced Intestinal Injury Through Modulation of Intestinal Barrier Integrity and Gut Microbiota Homeostasis
    Jianhua Zheng, Tianqi Sun, Tongtong Qin, Yunpeng Wu, Wensheng Zhang, Yefeng Qiu, Jingqing Chen
    Nutrients.2025; 17(6): 975.     CrossRef
  • Distribution of gut microbiota across intestinal segments and their impact on human physiological and pathological processes
    Ke Yang, Guangqin Li, Qihong Li, Wei Wang, Xu Zhao, Nan Shao, Hui Qiu, Jing Liu, Lin Xu, Juanjuan Zhao
    Cell & Bioscience.2025;[Epub]     CrossRef
  • Microbial melatonin metabolism in the human intestine as a therapeutic target for dysbiosis and rhythm disorders
    Petra Zimmermann, Salome Kurth, Benoit Pugin, Nicholas A. Bokulich
    npj Biofilms and Microbiomes.2024;[Epub]     CrossRef
  • Toll-like receptor 4 plays a vital role in irritable bowel syndrome: a scoping review
    Xuemeng Wan, Liyuan Wang, Zhiling Wang, Chaomin Wan
    Frontiers in Immunology.2024;[Epub]     CrossRef
  • Christensenella minuta mitigates behavioral and cardiometabolic hallmarks of social defeat stress
    A. Agusti, GV. Molina-Mendoza, M. Tamayo, V. Rossini, MC. Cenit, C. Frances-Cuesta, V. Tolosa-Enguis, EM. Gómez Del Pulgar, A. Flor-Duro, Y. Sanz
    Biomedicine & Pharmacotherapy.2024; 180: 117377.     CrossRef
  • The impact of acute and chronic stress on gastrointestinal physiology and function: a microbiota–gut–brain axis perspective
    Sarah‐Jane Leigh, Friederike Uhlig, Lars Wilmes, Paula Sanchez‐Diaz, Cassandra E. Gheorghe, Michael S. Goodson, Nancy Kelley‐Loughnane, Niall P. Hyland, John F. Cryan, Gerard Clarke
    The Journal of Physiology.2023; 601(20): 4491.     CrossRef
  • Melatonin as a Mediator of the Gut Microbiota–Host Interaction: Implications for Health and Disease
    María-Ángeles Bonmatí-Carrión, Maria-Angeles Rol
    Antioxidants.2023; 13(1): 34.     CrossRef
  • INVESTIGATION OF THE ROLE OF STRESS IN MALE INFERTILITY AND THE EFFECT OF CURRENT MELATONIN HORMONE TREATMENTS
    İshak GÖKÇEK, Leyla AYDIN
    Veteriner Farmakoloji ve Toksikoloji Derneği Bülteni.2023; 14(1): 36.     CrossRef
  • The double burden of malnutrition and environmental enteric dysfunction as potential factors affecting gut-derived melatonin in children under adverse environments
    Alane N. Bezerra, Caroline L. Peixoto, Synara C. Lopes, Veralice M. S. Bruin, Pedro Felipe C. Bruin, Reinaldo B. Oriá
    Frontiers in Nutrition.2023;[Epub]     CrossRef
  • Melatonin: Both a Messenger of Darkness and a Participant in the Cellular Actions of Non-Visible Solar Radiation of Near Infrared Light
    Dun-Xian Tan, Russel J. Reiter, Scott Zimmerman, Ruediger Hardeland
    Biology.2023; 12(1): 89.     CrossRef
  • Glucocorticoids coordinate the bladder peripheral clock and diurnal micturition pattern in mice
    Ichiro Chihara, Hiromitsu Negoro, Jin Kono, Yoshiyuki Nagumo, Haruki Tsuchiya, Kosuke Kojo, Masanobu Shiga, Ken Tanaka, Shuya Kandori, Bryan J. Mathis, Hiroyuki Nishiyama
    Communications Biology.2023;[Epub]     CrossRef
  • The Microbiota-Dependent Worsening Effects of Melatonin on Gut Inflammation
    Jefferson Luiz da Silva, Lia Vezenfard Barbosa, Camila Figueiredo Pinzan, Viviani Nardini, Irislene Simões Brigo, Cássia Aparecida Sebastião, Jefferson Elias-Oliveira, Vânia Brazão, José Clóvis do Prado Júnior, Daniela Carlos, Cristina Ribeiro de Barros C
    Microorganisms.2023; 11(2): 460.     CrossRef
  • The Effects of Stress and Diet on the “Brain–Gut” and “Gut–Brain” Pathways in Animal Models of Stress and Depression
    Mauritz F. Herselman, Sheree Bailey, Larisa Bobrovskaya
    International Journal of Molecular Sciences.2022; 23(4): 2013.     CrossRef
  • Intestinal microbiota and melatonin in the treatment of secondary injury and complications after spinal cord injury
    Yiwen Zhang, Rui Lang, Shunyu Guo, Xiaoqin Luo, Huiting Li, Cencen Liu, Wei Dong, Changshun Bao, Yang Yu
    Frontiers in Neuroscience.2022;[Epub]     CrossRef
  • Protective Effects and Mechanisms of Melatonin on Stress Myocardial Injury in Rats
    Jia-yao Chen, Ting Li, Jiao-ling Wang, Zhan-le Wang, Yun Zhang, Lin-quan Zang
    Journal of Cardiovascular Pharmacology.2022; 80(3): 417.     CrossRef
  • Rescue of social deficits by early-life melatonin supplementation through modulation of gut microbiota in a murine model of autism
    Xia Liu, Yi Cui, Yuhan Zhang, Guo Xiang, Meng Yu, Xianshu Wang, Bin Qiu, Xin-gang Li, Wei Liu, Di Zhang
    Biomedicine & Pharmacotherapy.2022; 156: 113949.     CrossRef
  • Roles of PRR-Mediated Signaling Pathways in the Regulation of Oxidative Stress and Inflammatory Diseases
    Pengwei Li, Mingxian Chang
    International Journal of Molecular Sciences.2021; 22(14): 7688.     CrossRef
Review
Metaviromics coupled with phage-host identification to open the viral ‘black box’
Kira Moon , Jang-Cheon Cho
J. Microbiol. 2021;59(3):311-323.   Published online February 23, 2021
DOI: https://doi.org/10.1007/s12275-021-1016-9
  • 415 View
  • 0 Download
  • 11 Web of Science
  • 11 Crossref
AbstractAbstract PDF
Viruses are found in almost all biomes on Earth, with bacteriophages (phages) accounting for the majority of viral particles in most ecosystems. Phages have been isolated from natural environments using the plaque assay and liquid medium- based dilution culturing. However, phage cultivation is restricted by the current limitations in the number of culturable bacterial strains. Unlike prokaryotes, which possess universally conserved 16S rRNA genes, phages lack universal marker genes for viral taxonomy, thus restricting cultureindependent analyses of viral diversity. To circumvent these limitations, shotgun viral metagenome sequencing (i.e., metaviromics) has been developed to enable the extensive sequencing of a variety of viral particles present in the environment and is now widely used. Using metaviromics, numerous studies on viral communities have been conducted in oceans, lakes, rivers, and soils, resulting in many novel phage sequences. Furthermore, auxiliary metabolic genes such as ammonic monooxygenase C and β-lactamase have been discovered in viral contigs assembled from viral metagenomes. Current attempts to identify putative bacterial hosts of viral metagenome sequences based on sequence homology have been limited due to viral sequence variations. Therefore, culture- independent approaches have been developed to predict bacterial hosts using single-cell genomics and fluorescentlabeling. This review focuses on recent viral metagenome studies conducted in natural environments, especially in aquatic ecosystems, and their contributions to phage ecology. Here, we concluded that although metaviromics is a key tool for the study of viral ecology, this approach must be supplemented with phage-host identification, which in turn requires the cultivation of phage-bacteria systems.

Citations

Citations to this article as recorded by  
  • Shotgun Metagenomic Sequencing Analysis as a Diagnostic Strategy for Patients with Lower Respiratory Tract Infections
    Ha-eun Cho, Min Jin Kim, Jongmun Choi, Yong-Hak Sohn, Jae Joon Lee, Kyung Sun Park, Sun Young Cho, Ki-Ho Park, Young Jin Kim
    Microorganisms.2025; 13(6): 1338.     CrossRef
  • Omnipresent Allies: The Role of Temperate Phages in Microbial Adaptation Across Ecosystems
    Xiang Tang, Han‐Peng Liao, Jiang‐Tao Gao, Qiu‐E Yang, Christopher Rensing, Shun‐Gui Zhou
    Environmental Microbiology.2025;[Epub]     CrossRef
  • Long-read powered viral metagenomics in the oligotrophic Sargasso Sea
    Joanna Warwick-Dugdale, Funing Tian, Michelle L. Michelsen, Dylan R. Cronin, Karen Moore, Audrey Farbos, Lauren Chittick, Ashley Bell, Ahmed A. Zayed, Holger H. Buchholz, Luis M. Bolanos, Rachel J. Parsons, Michael J. Allen, Matthew B. Sullivan, Ben Tempe
    Nature Communications.2024;[Epub]     CrossRef
  • Tools and methodology to in silico phage discovery in freshwater environments
    Carlos Willian Dias Dantas, David Tavares Martins, Wylerson Guimarães Nogueira, Oscar Victor Cardenas Alegria, Rommel Thiago Jucá Ramos
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • A Pseudomonas Lysogenic Bacteriophage Crossing the Antarctic and Arctic, Representing a New Genus of Autographiviridae
    Zhenyu Liu, Wenhui Jiang, Cholsong Kim, Xiaoya Peng, Cong Fan, Yingliang Wu, Zhixiong Xie, Fang Peng
    International Journal of Molecular Sciences.2023; 24(8): 7662.     CrossRef
  • Evaluation of the ABL NGS assay for HIV-1 drug resistance testing
    Thomas Lhossein, Karine Sylvain, Véronique Descamps, Virginie Morel, Baptiste Demey, Etienne Brochot
    Heliyon.2023; 9(11): e22210.     CrossRef
  • Human virome: Implications in cancer
    Rafael Tamayo-Trujillo, Patricia Guevara-Ramírez, Santiago Cadena-Ullauri, Elius Paz-Cruz, Viviana A. Ruiz-Pozo, Ana Karina Zambrano
    Heliyon.2023; 9(3): e14086.     CrossRef
  • Metaviromics analysis of marine biofilm reveals a glycoside hydrolase endolysin with high specificity towards Acinetobacter baumannii
    Georgios E. Premetis, Nikolaos D. Georgakis, Angeliki Stathi, Nikolaos E. Labrou
    Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics.2023; 1871(4): 140918.     CrossRef
  • Comparative genomic analysis of five freshwater cyanophages and reference-guided metagenomic data mining
    Kang Du, Feng Yang, Jun-Tao Zhang, Rong-Cheng Yu, Ziqing Deng, Wei-Fang Li, Yuxing Chen, Qiong Li, Cong-Zhao Zhou
    Microbiome.2022;[Epub]     CrossRef
  • Phage-Host Prediction Using a Computational Tool Coupled with 16S rRNA Gene Amplicon Sequencing
    Harilanto Felana Andrianjakarivony, Yvan Bettarel, Fabrice Armougom, Christelle Desnues
    Viruses.2022; 15(1): 76.     CrossRef
  • Omics-based microbiome analysis in microbial ecology: from sequences to information
    Jang-Cheon Cho
    Journal of Microbiology.2021; 59(3): 229.     CrossRef
Journal Articles
Soil water content as a critical factor for stable bacterial community structure and degradative activity in maritime Antarctic soil
Dockyu Kim , Namyi Chae , Mincheol Kim , Sungjin Nam , Eungbin Kim , Hyoungseok Lee
J. Microbiol. 2020;58(12):1010-1017.   Published online December 2, 2020
DOI: https://doi.org/10.1007/s12275-020-0490-9
  • 388 View
  • 0 Download
  • 6 Web of Science
  • 6 Crossref
AbstractAbstract PDF
Recent increases in air temperature across the Antarctic Peninsula may prolong the thawing period and directly affect the soil temperature (Ts) and volumetric soil water content (SWC) in maritime tundra. Under an 8°C soil warming scenario, two customized microcosm systems with maritime Antarctic soils were incubated to investigate the differential influence of SWC on the bacterial community and degradation activity of humic substances (HS), the largest constituent of soil organic carbon and a key component of the terrestrial ecosystem. When the microcosm soil (KS1-4Feb) was incubated for 90 days (T = 90) at a constant SWC of ~32%, the initial HS content (167.0 mg/g of dried soil) decreased to 156.0 mg (approximately 6.6% loss, p < 0.05). However, when another microcosm soil (KS1-4Apr) was incubated with SWCs that gradually decreased from 37% to 9% for T = 90, HS degradation was undetected. The low HS degradative activity persisted, even after the SWC was restored to 30% with water supply for an additional T = 30. Overall bacterial community structure remained relatively stable at a constant SWC setting (KS1-4Feb). In contrast, we saw marked shifts in the bacterial community structure with the changing SWC regimen (KS1-4Apr), suggesting that the soil bacterial communities are vulnerable to drying and re-wetting conditions. These microcosm experiments provide new information regarding the effects of constant SWC and higher Ts on bacterial communities for HS degradation in maritime Antarctic tundra soil.

Citations

Citations to this article as recorded by  
  • Bacterial community composition and function in different habitats in Antarctic Fildes region revealed by high-throughput sequencing
    Yi-He Zhang, Yong-Qiang Hu, Yin-Xin Zeng, Ting Hu, Wei Han, Yu Du, Zhong Hu, Shan-Shan Meng
    Frontiers in Microbiology.2025;[Epub]     CrossRef
  • Effect of coal mining subsidence on soil microbial communities in mining areas with high groundwater levels
    Ruiping Xu, Junying Li, Xinju Li, Wen Song
    Environmental Geochemistry and Health.2025;[Epub]     CrossRef
  • Influence of Composite Amendments on the Characteristics of Sandy Soil
    Xinrui Sui, Lingyan Wang, Xinyao Lv, Yanan Liu, Yuqi Zhu, Lingyun Fan, Hanxi Wang
    Sustainability.2025; 17(17): 7619.     CrossRef
  • Microbial metabolic responses and CO2 emissions differentiated by soil water content variation in subarctic tundra soils
    Dockyu Kim, Namyi Chae, Mincheol Kim, Sungjin Nam, Tai Kyoung Kim, Ki-Tea Park, Bang Yong Lee, Eungbin Kim, Hyoungseok Lee
    Journal of Microbiology.2022; 60(12): 1130.     CrossRef
  • Temperature sensitivity of Antarctic soil‐humic substance degradation by cold‐adapted bacteria
    Dockyu Kim, Ha Ju Park, Mincheol Kim, Seulah Lee, Soon Gyu Hong, Eungbin Kim, Hyoungseok Lee
    Environmental Microbiology.2022; 24(1): 265.     CrossRef
  • Seasonal patterns of rhizosphere microorganisms suggest carbohydrate-degrading and nitrogen-fixing microbes contribute to the attribute of full-year shooting in woody bamboo Cephalostachyum pingbianense
    Lushuang Li, Tize Xia, Hanqi Yang
    Frontiers in Microbiology.2022;[Epub]     CrossRef
Monthly distribution of ammonia-oxidizing microbes in a tropical bay
Tie-Qiang Mao , Yan-Qun Li , Hong-Po Dong , Wen-Na Yang , Li-Jun Hou
J. Microbiol. 2021;59(1):10-19.   Published online November 17, 2020
DOI: https://doi.org/10.1007/s12275-021-0287-5
  • 299 View
  • 0 Download
  • 2 Web of Science
  • 2 Crossref
AbstractAbstract PDF
Ammonia oxidation, performed by ammonia-oxidizing archaea (AOA) and bacteria (AOB), plays a critical role in the cycle of nitrogen in the ocean. For now, environmental variables controlling distribution of ammonia-oxidizing microbes are still largely unknown in oceanic environments. In this study, we used real-time quantitative PCR and high-throughput sequencing
methods
to investigate the abundance and diversity of AOA and AOB from sediment and water in Zhanjiang Bay. Phylogenic analysis revealed that the majority of AOA amoA sequences in water and sediment were affiliated with the genus Nitrosopumilus, whereas the Nitrosotalea cluster was only detected with low abundance in water. Nitrosomonas and Nitrosospira dominated AOB amoA sequences in water and sediment, respectively. The amoA copy numbers of both AOA and AOB varied significantly with month for both sediment and water. When water and sediment temperature dropped to 17– 20°C in December and February, respectively, the copy number of AOB amoA genes increased markedly and was much higher than for AOA amoA genes. Also, AOA abundance in water peaked in December when water temperature was lowest (17–20°C). Stepwise multiple regression analyses revealed that temperature was the most key factor driving monthly changes of AOA or AOB abundance. It is inferred that low water temperature may inhibit growth of phytoplankton and other microbes and so reduce competition for a common substrate, ammonium.

Citations

Citations to this article as recorded by  
  • Unveiling the biogeography of ammonia-oxidizing prokaryotes (AOPs) in the South China Sea: Novel lineages and their ecological niches
    Yuexi Ma, Cuihong Jiang, Jiapeng Wu, Xiaoyi Li, Fei Ye, Xiaomei Shen, Yu Wang, Yiguo Hong
    Marine Environmental Research.2025; 210: 107266.     CrossRef
  • Oyster cultivation regulating seasonal nitrate cycling in the estuarine water
    Xin Zhou, Zhiguang Song, Chunqing Chen, Qingmei Zhu, Fajin Chen
    Marine Pollution Bulletin.2025; 220: 118435.     CrossRef
Similarities and differences between 6S RNAs from Bradyrhizobium japonicum and Sinorhizobium meliloti
Olga Y. Burenina , Daria A. Elkina , Anzhela Y. Migur , Tatiana S. Oretskaya , Elena Evguenieva-Hackenberg , RolK. Hartmann , Elena A. Kubareva
J. Microbiol. 2020;58(11):945-956.   Published online October 30, 2020
DOI: https://doi.org/10.1007/s12275-020-0283-1
  • 438 View
  • 0 Download
  • 6 Web of Science
  • 7 Crossref
AbstractAbstract PDF
6S RNA, a conserved and abundant small non-coding RNA found in most bacteria, regulates gene expression by inhibiting RNA polymerase (RNAP) holoenzyme. 6S RNAs from α-proteobacteria have been studied poorly so far. Here, we present a first in-depth analysis of 6S RNAs from two α-proteobacteria species, Bradyrhizobium japonicum and Sinorhizobium meliloti. Although both belong to the order Rhizobiales and are typical nitrogen-fixing symbionts of legumes, their 6S RNA expression profiles were found to differ: B. japonicum 6S RNA accumulated in the stationary phase, thus being reminiscent of Escherichia coli 6S RNA, whereas S. meliloti 6S RNA level peaked at the transition to the stationary phase, similarly to Rhodobacter sphaeroides 6S RNA. We demonstrated in vitro that both RNAs have hallmarks of 6S RNAs: they bind to the σ70-type RNAP holoenzyme and serve as templates for de novo transcription of so-called product RNAs (pRNAs) ranging in length from ~13 to 24 nucleotides, with further evidence of the synthesis of even longer pRNAs. Likewise, stably bound pRNAs were found to rearrange the 6S RNA structure to induce its dissociation from RNAP. Compared with B. japonicum 6S RNA, considerable conformational heterogeneity was observed for S. meliloti 6S RNA and its complexes with pRNAs, even though the two 6S RNAs share ~75% sequence identity. Overall, our findings suggest that the two rhizobial 6S RNAs have diverged with respect to their regulatory impact on gene expression throughout the bacterial life cycle.

Citations

Citations to this article as recorded by  
  • 6S-1 pRNA 9-mers are a prominent length species during outgrowth of Bacillus subtilis cells from extended stationary phase
    Katrin Damm, Paul Klemm, Marcus Lechner, Dominik Helmecke, Roland K. Hartmann
    RNA Biology.2025; 22(1): 1.     CrossRef
  • Bacteria Adaptation Mechanisms to Stress Conditions with Small Non-Coding RNAs Participation
    A. S. Karpov, D. A. Elkina, T. S. Oretskaya, E. A. Kubareva
    Биоорганическая химия.2023; 49(6): 555.     CrossRef
  • Bacterial Adaptation Mechanisms to Stress Conditions with Small Non-Coding RNAs Participation (A Review)
    A. S. Karpov, D. A. Elkina, T. S. Oretskaya, E. A. Kubareva
    Russian Journal of Bioorganic Chemistry.2023; 49(6): 1198.     CrossRef
  • Structural and Functional Insight into the Mechanism of Bacillus subtilis 6S-1 RNA Release from RNA Polymerase
    Sweetha Ganapathy, Philipp G. Hoch, Marcus Lechner, Malte Bussiek, Roland K. Hartmann
    Non-Coding RNA.2022; 8(1): 20.     CrossRef
  • Involvement of E. coli 6S RNA in Oxidative Stress Response
    Olga Y. Burenina, Daria A. Elkina, Anna Ovcharenko, Valeria A. Bannikova, M. Amri C. Schlüter, Tatiana S. Oretskaya, Roland K. Hartmann, Elena A. Kubareva
    International Journal of Molecular Sciences.2022; 23(7): 3653.     CrossRef
  • Ms1 RNA Interacts With the RNA Polymerase Core in Streptomyces coelicolor and Was Identified in Majority of Actinobacteria Using a Linguistic Gene Synteny Search
    Viola Vaňková Hausnerová, Olga Marvalová, Michaela Šiková, Mahmoud Shoman, Jarmila Havelková, Milada Kambová, Martina Janoušková, Dilip Kumar, Petr Halada, Marek Schwarz, Libor Krásný, Jarmila Hnilicová, Josef Pánek
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Detection of Small Products of Transcription from 6S RNA (pRNA) by “Mirror-Like” Northern Blot Hybridization
    O. Y. Burenina, T. S. Oretskaya, E. A. Kubareva
    Russian Journal of Bioorganic Chemistry.2021; 47(2): 478.     CrossRef
Chitosan-chelated zinc modulates cecal microbiota and attenuates inflammatory response in weaned rats challenged with Escherichia coli
Dan Feng , Minyang Zhang , Shiyi Tian , Jing Wang , Weiyun Zhu
J. Microbiol. 2020;58(9):780-792.   Published online September 1, 2020
DOI: https://doi.org/10.1007/s12275-020-0056-x
  • 379 View
  • 0 Download
  • 10 Web of Science
  • 10 Crossref
AbstractAbstract PDF
Escherichia coli (E. coli) infection is very common among young growing animals, and zinc supplementation is often used to alleviate inflammation induced by this disease. Therefore, the objective of this study was to evaluate whether chitosan- chelated zinc (CS-Zn) supplementation could attenuate gut injury induced by E. coli challenge and to explore how CSZn modulates cecal microbiota and alleviates intestinal inflammation in weaned rats challenged with E. coli. 36 weaned rats (55.65 ± 2.18 g of BW, n = 12) were divided into three treatment groups consisting of unchallenged rats fed a basal diet (Control) and two groups of rats challenged with E. coli and fed a basal diet or a diet containing 640 mg/kg CS-Zn (E. coli + CS-Zn, containing 50 mg/kg Zn) for a 14-day experiment. On days 10 to 12, each rat was given 4 ml of E. coli solution with a total bacteria count of 1010 CFU by oral gavage daily or normal saline of equal dosage. CS-Zn supplementation mitigated intestinal morphology impairment (e.g. higher crypt depth and lower macroscopic damage index) induced by E. coli challenge (P < 0.05), and alleviated the increase of Myeloperoxidase (MPO) activity after E. coli challenge (P < 0.05). 16S rRNA sequencing analyses revealed that E. coli challenge significantly increased the abundance of Verrucomicrobia and E. coli (P < 0.05). However, CS-Zn supplementation increased the abundance of Lactobacillus and decreased the relative abundance of Proteobacteria, Desulfovibrio and E. coli (P < 0.05). The concentrations of butyrate in the cecal digesta, which decreased due to the challenge, were higher in the E. coli + CS-Zn group (P < 0.05). In addition, CS-Zn supplementation significantly prevented the elevation of pro-inflammatory cytokines IL-6 concentration and upregulated the level of anti-inflammatory cytokines IL-10 in cecal mucosa induced by E. coli infection (P < 0.05). In conclusion, these results indicate that CS-Zn produces beneficial effects in alleviating gut mucosal injury of E. coli challenged rats by enhancing the intestinal morphology and modulating cecal bacterial composition, as well as attenuating inflammatory response.

Citations

Citations to this article as recorded by  
  • Zinc Glycine supplementation improves bone quality in meat geese by modulating gut microbiota, SCFA's, and gut barrier function through Wnt10b/NF-κB axis
    Zeshan Zulfiqar, Muhammad Arslan Asif, Mengqi Liu, Shuhang Zhang, Hamid reza Rafieian Naeini, Yalei Cui, Boshuai Liu, Yinghua Shi
    Poultry Science.2025; 104(4): 104925.     CrossRef
  • Organic zinc glycine chelate is better than inorganic zinc in improving growth performance of cherry valley ducks by regulating intestinal morphology, barrier function, and the gut microbiome
    Yaqi Chang, Ke Wang, Min Wen, Bing Wu, Guangmang Liu, Hua Zhao, Xiaoling Chen, Jingyi Cai, Gang Jia
    Journal of Animal Science.2023;[Epub]     CrossRef
  • Effects on the intestinal morphology, inflammatory response and microflora in piglets challenged with enterotoxigenic Escherichia coli K88
    Kun Zhang, Xiaoyang Shen, Lu Han, Mengyun Wang, Shaoqiang Lian, Kejun Wang, Chunli Li
    Research in Veterinary Science.2023; 157: 50.     CrossRef
  • Surface engineering of chitosan nanosystems and the impact of functionalized groups on the permeability of model drug across intestinal tissue
    Sadaf Ejaz, Syed Muhammad Afroz Ali, Bina Zarif, Ramla Shahid, Ayesha Ihsan, Tayyaba Noor, Muhammad Imran
    International Journal of Biological Macromolecules.2023; 242: 124777.     CrossRef
  • Chitosan Protects Immunosuppressed Mice Against Cryptosporidium parvum Infection Through TLR4/STAT1 Signaling Pathways and Gut Microbiota Modulation
    Sajid Ur Rahman, Haiyan Gong, Rongsheng Mi, Yan Huang, Xiangan Han, Zhaoguo Chen
    Frontiers in Immunology.2022;[Epub]     CrossRef
  • Effect of Dietary Zinc Methionine Supplementation on Growth Performance, Immune Function and Intestinal Health of Cherry Valley Ducks Challenged With Avian Pathogenic Escherichia coli
    Yaqi Chang, Jia Mei, Ting Yang, Zhenyu Zhang, Guangmang Liu, Hua Zhao, Xiaoling Chen, Gang Tian, Jingyi Cai, Bing Wu, Fali Wu, Gang Jia
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Chitosan-chelated zinc modulates ileal microbiota, ileal microbial metabolites, and intestinal function in weaned piglets challenged with Escherichia coli K88
    Guojun Hou, Minyang Zhang, Jing Wang, Weiyun Zhu
    Applied Microbiology and Biotechnology.2021; 105(19): 7529.     CrossRef
  • Gut Microbiota as a Mediator of Essential and Toxic Effects of Zinc in the Intestines and Other Tissues
    Anatoly V. Skalny, Michael Aschner, Xin Gen Lei, Viktor A. Gritsenko, Abel Santamaria, Svetlana I. Alekseenko, Nagaraja Tejo Prakash, Jung-Su Chang, Elena A. Sizova, Jane C. J. Chao, Jan Aaseth, Alexey A. Tinkov
    International Journal of Molecular Sciences.2021; 22(23): 13074.     CrossRef
  • Potential Applications of Chitosan-Based Nanomaterials to Surpass the Gastrointestinal Physiological Obstacles and Enhance the Intestinal Drug Absorption
    Nutthapoom Pathomthongtaweechai, Chatchai Muanprasat
    Pharmaceutics.2021; 13(6): 887.     CrossRef
  • Modulation of Gut Microbiota for the Prevention and Treatment of COVID-19
    Jiezhong Chen, Luis Vitetta
    Journal of Clinical Medicine.2021; 10(13): 2903.     CrossRef
Inhibitory effects of piceatannol on human cytomegalovirus (hCMV) in vitro
San-Ying Wang , Jing Zhang , Xiao-Gang Xu , Hui-Li Su , Wen-Min Xing , Zhong-Shan Zhang , Wei-Hua Jin , Ji-Huan Dai , Ya-Zhen Wang , Xin-Yue He , Chuan Sun , Jing Yan , Gen-Xiang Mao
J. Microbiol. 2020;58(8):716-723.   Published online June 10, 2020
DOI: https://doi.org/10.1007/s12275-020-9528-2
  • 372 View
  • 0 Download
  • 13 Web of Science
  • 13 Crossref
AbstractAbstract PDF
Human cytomegalovirus (hCMV) is a ubiquitous herpesvirus, which results in the establishment of a latent infection that persists throughout the life of the host and can be reactivated when the immunity is low. Currently, there is no vaccine for hCMV infection, and the licensed antiviral drugs mainly target the viral enzymes and have obvious adverse reactions. Thus, it is important to search for compounds with antihCMV properties. The present study aimed to investigate the suppressive effects of piceatannol on hCMV Towne strain infection and the putative underlying mechanisms using human diploid fibroblast WI-38 cells. Piceatannol supplementation prevented the lytic changes induced by hCMV infection in WI-38 cells. Furthermore, piceatannol suppressed the expression of hCMV immediate-early (IE) and early (E) proteins as well as the replication of hCMV DNA in a dose-dependent manner. Moreover, hCMV-induced cellular senescence was suppressed by piceatannol, as shown by a decline in the senescence-associated β-galactosidase (SA-β-Gal) activity and decreased production of intracellular reactive oxygen species (ROS). p16INK4a, a major senescence-associated molecule, was dramatically elevated by current hCMV infection that was attenuated by pre-incubation with piceatannol in a dose-dependent manner. These results demonstrated that piceatannol suppressed the hCMV infection via inhibition of the activation of p16INK4a and cellular senescence induced by hCMV. Together, these findings indicate piceatannol as a novel and potent anti-hCMV agent with the potential to be developed as an effective treatment for chronic hCMV infection.

Citations

Citations to this article as recorded by  
  • Broad-Spectrum Virus Elimination by Nasal Mucosa-Colonized Wild-Type Bacillus subtilis
    Yuchen Li, Chengjie Yang, Rongfeng Tang, Chengcheng Wang, Yunfeng Li, Wenwen Chao, Ahui Cui, Chun Liang, Ying Duan, Hui Zeng, Qian Yang
    Research.2025;[Epub]     CrossRef
  • Piceatannol: a multifaceted polyphenol—from pharmacological actions to formulation development and clinical trials
    Ravi Kumar Rajan, Bedanta Bhattacharjee, Hemanga Hazarika, Padmanath Pegu, Damanbhalang Rynjah, Maida Engels, Abdul Baquee Ahmed, Muthiah Ramanathan
    Advances in Traditional Medicine.2025; 25(4): 837.     CrossRef
  • Piceatannol, a comprehensive review of health perspectives and pharmacological aspects
    Hala I. Al-Jaber, Ashok K. Shakya, Mahmoud A. Al-Qudah, Lina M. Barhoumi, Hana E. Abu-Sal, Hazem S. Hasan, Nezar Al-Bataineh, Sultan Abu-Orabi, Mohammad S. Mubarak
    Arabian Journal of Chemistry.2024; 17(9): 105939.     CrossRef
  • Mechanism of PRRSV infection and antiviral role of polyphenols
    Fructueux Modeste Amona, Yipeng Pang, Xingyu Gong, Yanhong Wang, Xingtang Fang, Chunlei Zhang, Xi Chen
    Virulence.2024;[Epub]     CrossRef
  • Predicting phase-I metabolism of piceatannol: an in silico study
    Ravi Kumar Rajan, Maida Engels, Muthiah Ramanathan
    In Silico Pharmacology.2024;[Epub]     CrossRef
  • Inhibition of influenza a virus infection by natural stilbene piceatannol targeting virus hemagglutinin
    Lianghao Huang, Jinyu Wang, Xiaoyao Ma, Lishan Sun, Cui Hao, Wei Wang
    Phytomedicine.2023; 120: 155058.     CrossRef
  • Latin American Plants against Microorganisms
    Sofía Isabel Cuevas-Cianca, Cristian Romero-Castillo, José Luis Gálvez-Romero, Eugenio Sánchez-Arreola, Zaida Nelly Juárez, Luis Ricardo Hernández
    Plants.2023; 12(23): 3997.     CrossRef
  • Piceatannol as an Antiviral Inhibitor of PRV Infection In Vitro and In Vivo
    Zhiying Wang, Xiaojing Cai, Zhiyuan Ren, Yi Shao, Yongkang Xu, Lian Fu, Yan Zhu
    Animals.2023; 13(14): 2376.     CrossRef
  • Recent Advances in Antiviral Activities of Triterpenoids
    Yue Liu, Liangyu Yang, Hong Wang, Yongai Xiong
    Pharmaceuticals.2022; 15(10): 1169.     CrossRef
  • Insights into Antiviral Properties and Molecular Mechanisms of Non-Flavonoid Polyphenols against Human Herpesviruses
    Sherif T. S. Hassan, Miroslava Šudomová, Alena Mazurakova, Peter Kubatka
    International Journal of Molecular Sciences.2022; 23(22): 13891.     CrossRef
  • Suppressive effects of pterostilbene on human cytomegalovirus (HCMV) infection and HCMV-induced cellular senescence
    Sanying Wang, Xuqiang Zhou, Xinyue He, Shushu Ma, Chuan Sun, Jing Zhang, Xiaogang Xu, Weihua Jin, Jin Yan, Ping Lin, Genxiang Mao
    Virology Journal.2022;[Epub]     CrossRef
  • Sulphated glucuronomannan tetramer and hexamer from Sargassum thunbergii exhibit anti-human cytomegalovirus activity by blocking viral entry
    Sanying Wang, Xiaogang Xu, Chuan Sun, Jing Zhang, Xinyue He, Zhongshan Zhang, Hong Huang, Jing Yan, Weihua Jin, Genxiang Mao
    Carbohydrate Polymers.2021; 273: 118510.     CrossRef
  • Chemical constituents from coconut waste and their in silico evaluation as potential antiviral agents against SARS-CoV-2
    Marwa Elsbaey, Mahmoud A.A. Ibrahim, Fatma Abdel Bar, Abdullah A. Elgazar
    South African Journal of Botany.2021; 141: 278.     CrossRef
Ciceribacter ferrooxidans sp. nov., a nitrate-reducing Fe(II)-oxidizing bacterium isolated from ferrous ion-rich sediment
Tongchu Deng , Youfen Qian , Xingjuan Chen , Xunan Yang , Jun Guo , Guoping Sun , Meiying Xu
J. Microbiol. 2020;58(5):350-356.   Published online April 27, 2020
DOI: https://doi.org/10.1007/s12275-020-9471-2
  • 442 View
  • 0 Download
  • 9 Web of Science
  • 9 Crossref
AbstractAbstract PDF
A nitrate-reducing Fe(II)-oxidizing bacterial strain, F8825T, was isolated from the Fe(II)-rich sediment of an urban creek in Pearl River Delta, China. The strain was Gram-negative, facultative chemolithotrophic, facultative anaerobic, nonspore- forming, and rod-shaped with a single flagellum. Phylogenetic analysis based on 16S rRNA gene sequencing indicated that it belongs to the genus Ciceribacter and is most closely related to C. lividus MSSRFBL1T (99.4%), followed by C. thiooxidans F43bT (98.8%) and C. azotifigens A.slu09T (98.0%). Fatty acid, polar lipid, respiratory quinone, and DNA G + C content analyses supported its classification in the genus Ciceribacter. Multilocus sequence analysis of concatenated 16S rRNA, atpD, glnII, gyrB, recA, and thrC suggested that the isolate was a novel species. DNA–DNA hybridization and genome sequence comparisons (90.88 and 89.86%, for values of ANIm and ANIb between strains F8825T with MSSRFBL1T, respectively) confirmed that strain F8825T was a novel species, different from C. lividus MSSRFBL1T, C. thiooxidans F43bT, and C. azotifigens A.slu09T. The physiological and biochemical properties of the strain, such as carbon source utilization, nitrate reduction, and ferrous ion oxidation, further supported that this is a novel species. Based on the polyphasic taxonomic results, strain F8825T was identified as a novel species in the genus Ciceribacter, for which the name Ciceribacter ferrooxidans sp. nov. is proposed. The type strain is F8825T (= CCTCC AB 2018196T = KCTC 62948T).

Citations

Citations to this article as recorded by  
  • Oryzifoliimicrobium ureilyticus gen. nov., sp. nov., a Novel Phosphate-Solubilizing and Siderophore-Producing Bacterium Within the Family Rhizobiaceae
    Guo-Hong Liu, Ling Yao, Peng Gao, Shu-Qun Zhang, Bing Li, Christopher Rensing, Wen-Qing Li, Shun-Gui Zhou
    Current Microbiology.2025;[Epub]     CrossRef
  • Biological denitrification performance of a novel sulfur-slow-release carbon source mixed filler
    Zhen Peng, Hang Shi, Shengkai Wu, Yao Fan, Xu Ye, Qisong Liu, Bo Liu
    Journal of Water Process Engineering.2024; 62: 105257.     CrossRef
  • Pathways and contributions of sulfate reducing-bacteria to arsenic cycling in landfills
    Lifang Hu, Feng Huang, Yating Qian, Tao Ding, Yuzhou Yang, Dongsheng Shen, Yuyang Long
    Journal of Hazardous Materials.2024; 473: 134582.     CrossRef
  • Ciceribacter sichuanensis sp. nov., a plant growth promoting rhizobacterium isolated from root nodules of soybean in Sichuan, China
    Yanqin Zhang, Yuanxue Chen, Petri Penttinen, Xing Wang, Ying Quan, Licheng Wen, Miao Yang, Xiaoping Zhang, Qiang Chen, Lingzi Zhang, Junjie Zhang, Xiaoxia Zhang, Kaiwei Xu
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Genomic Insights into the Landfill Microbial Community: Denitrifying Activity Supporting One-Carbon Utilization
    Bhagyashri J. Poddar, Anshuman A. Khardenavis
    Applied Biochemistry and Biotechnology.2024; 196(12): 8866.     CrossRef
  • Sediment-isolated Comamonas terrigena strain HJ-2: a novel nitrate-dependent ferrous-oxidizing bacterium with multifunction on pollutant transformation
    Rong Peng, Junhao Shen, Shuang Li, Hui Liu
    Letters in Applied Microbiology.2023;[Epub]     CrossRef
  • New Anaerobic Iron-Cycling Bacteria Isolated from the Yessentukskoye Mineral Water Deposit
    D. G. Zavarzina, V. A. Pikhtereva, A. A. Klyukina, A. Yu. Merkel, S. N. Gavrilov
    Microbiology.2023; 92(S1): S12.     CrossRef
  • Genomic characterization of denitrifying methylotrophic Pseudomonas aeruginosa strain AAK/M5 isolated from municipal solid waste landfill soil
    Ashish Kumar Singh, Rakesh Kumar Gupta, Hemant J. Purohit, Anshuman Arun Khardenavis
    World Journal of Microbiology and Biotechnology.2022;[Epub]     CrossRef
  • International Committee on Systematics of Prokaryotes, Subcommittee on the taxonomy of Rhizobia and Agrobacteria, minutes of the annual meeting by videoconference, 5 July 2021, followed by online discussion until 31 December 2021
    Seyed Abdollah Mousavi, J. Peter W. Young
    International Journal of Systematic and Evolutionary Microbiology.2022;[Epub]     CrossRef
Microbial community analysis using high-throughput sequencing technology: a beginner’s guide for microbiologists
Jihoon Jo , Jooseong Oh , Chungoo Park
J. Microbiol. 2020;58(3):176-192.   Published online February 27, 2020
DOI: https://doi.org/10.1007/s12275-020-9525-5
  • 434 View
  • 0 Download
  • 50 Web of Science
  • 51 Crossref
AbstractAbstract PDF
Microbial communities present in diverse environments from deep seas to human body niches play significant roles in the complex ecosystem and human health. Characterizing their structural and functional diversities is indispensable, and many approaches, such as microscopic observation, DNA fingerprinting, and PCR-based marker gene analysis, have been successfully applied to identify microorganisms. Since the revolutionary improvement of DNA sequencing technologies, direct and high-throughput analysis of genomic DNA from a whole environmental community without prior cultivation has become the mainstream approach, overcoming the constraints of the classical approaches. Here, we first briefly review the history of environmental DNA analysis applications with a focus on profiling the taxonomic composition and functional potentials of microbial communities. To this end, we aim to introduce the shotgun metagenomic sequencing (SMS) approach, which is used for the untargeted (“shotgun”) sequencing of all (“meta”) microbial genomes (“genomic”) present in a sample. SMS data analyses are performed in silico using various software programs; however, in silico analysis is typically regarded as a burden on wet-lab experimental microbiologists. Therefore, in this review, we present microbiologists who are unfamiliar with in silico analyses with a basic and practical SMS data analysis protocol. This protocol covers all the bioinformatics processes of the SMS analysis in terms of data preprocessing, taxonomic profiling, functional annotation, and visualization.

Citations

Citations to this article as recorded by  
  • Progress in Characteristics and Influencing Factors of Microorganisms Controlling Nitrogen Cycle in the Hyporheic Zone of a River
    宇鹏 周
    Advances in Geosciences.2025; 15(03): 281.     CrossRef
  • Field Inoculation of Pleurotus tuoliensis in Natural Habitat Promotes Microbial Communities That Enhance Its Growth
    Ying Luo, Hanbing Liu, Wenjie Jia, Nuerziya Yalimaimaiti, Qi Zhu, Peisong Jia, Yilin Huang, Wenting Shi, Chunhua Sun, Jianhua Guan
    Agronomy.2025; 15(5): 1136.     CrossRef
  • Omics approaches to explore the coffee fermentation microecosystem and its effects on cup quality
    Dolly Margot Revelo-Romo, Nelson Humberto Hurtado Gutiérrez, Arsenio Hidalgo Troya, Carol V. Amaya-Gómez, Diego Hernando Flórez-Martínez, Jörg Overmann, María Francisca Villegas Torres, Andrés Fernando González Barrios
    Food Research International.2025; 206: 116035.     CrossRef
  • Higher order volatile fatty acid metabolism and atypical polyhydroxyalkanoate production in fermentation-enhanced biological phosphorus removal
    R. Thomson, C. Le, L. Wang, D.J. Batstone, Y. Zhou, A. Oehmen
    Water Research.2025; 280: 123503.     CrossRef
  • Symbiotic association of rhizobiome with newly discovered Gastrodia indica, a holomycotrophic orchid species from eastern Himalayas
    Yukti Oza, Sanjana Sharma Sarkar, Mrunal Karande, Madhusudhan Khanal, Adharsika Pradhan, Sandeep Rawat, Avinash Sharma
    Biologia.2025; 80(10): 2859.     CrossRef
  • Effects of Lactobacillus brevis additives on nutrient composition, fermentation quality, microflora structure and metabolites of Pennisetum giganteum silage
    Juanrui Liao, Shaona Liu, Fuhua Yang, Yurong Fu, Hanqi Duan, Xiaowei Bao, Jinlong Huo, Zhiyong Zhao
    Frontiers in Veterinary Science.2025;[Epub]     CrossRef
  • Gut-Microbiota-Derived Metabolites and Probiotic Strategies in Colorectal Cancer: Implications for Disease Modulation and Precision Therapy
    Yi-Chu Yang, Shih-Chang Chang, Chih-Sheng Hung, Ming-Hung Shen, Ching-Long Lai, Chi-Jung Huang
    Nutrients.2025; 17(15): 2501.     CrossRef
  • Geophagia among pregnant women: evaluating the microbiological and toxicological safety of calabash chalk and its implications on maternal health
    Alice Njolke Mafe, Oluwadamilola Makinde, Rasheed Adegbola Adeleke
    Environmental Geochemistry and Health.2025;[Epub]     CrossRef
  • Progresses in microbial taxonomy research methods
    Susinjan Bhattacharya
    Proceedings of the Indian National Science Academy.2025;[Epub]     CrossRef
  • Dynamic multi-omics analysis reveals the correlation between aroma compounds and symbiotic microbial community during tobacco leaf aging process
    Lifeng Jin, Qiang Xu, Chenlin Miao, Jiaguo Zhan, Yifan Zhang, Mingxi Li, Jiale Cheng, Pingping Liu, Yue Yang, Huina Zhou, Zongyu Hu, Feng Li, Chongming Wu
    BMC Plant Biology.2025;[Epub]     CrossRef
  • Current updates on metabolites and its interlinked pathways as biomarkers for diabetic kidney disease: A systematic review
    Soumik Das, V Devi Rajeswari, Ganesh Venkatraman, Ramprasad Elumalai, Sivaraman Dhanasekaran, Gnanasambandan Ramanathan
    Translational Research.2024; 265: 71.     CrossRef
  • The Role of Soil Microbiome in Driving Plant Performance: An Overview Based on Ecological and Ecosystem Advantages to the Plant Community
    Grace Gachara, Jihane Kenfaoui, Rashid Suleiman, Beatrice Kilima, Mohammed Taoussi, Kamal Aberkani, Zineb Belabess, Abdelilah Meddich, Nadia Handaq, Salah-Eddine Laasli, Essaid Ait Barka, Rachid Lahlali
    Journal of Crop Health.2024; 76(1): 3.     CrossRef
  • Comparison of Culture-Dependent and Culture-Independent Methods for Routine Identification of Airborne Microorganisms in Speleotherapeutic Caves
    Rok Tomazin, Tjaša Cerar Kišek, Tea Janko, Tina Triglav, Katja Strašek Smrdel, Vesna Cvitković Špik, Andreja Kukec, Janez Mulec, Tadeja Matos
    Microorganisms.2024; 12(7): 1427.     CrossRef
  • The infants’ gut microbiome: setting the stage for the early onset of obesity
    Yvonne Vallès, Muhammad Arshad, Mamoun Abdalbaqi, Claire K. Inman, Amar Ahmad, Nizar Drou, Kristin C. Gunsalus, Raghib Ali, Muna Tahlak, Abdishakur Abdulle
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Metabarcoding of zooplankton communities of Dianchi Lake based on the mitochondrial cytochrome oxidase subunit 1 gene
    Fu Cen, Shan Xu, Genshen Yin, Minghua Dong
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Rational construction of synthetic consortia: Key considerations and model-based methods for guiding the development of a novel biosynthesis platform
    Yu Liu, Boyuan Xue, Hao Liu, Shaojie Wang, Haijia Su
    Biotechnology Advances.2024; 72: 108348.     CrossRef
  • Genome mining of Mycobacterium tuberculosis: targeting SufD as a novel drug candidate through in silico characterization and inhibitor screening
    Neelima Gorityala, Anthony Samit Baidya, Someswar R. Sagurthi
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Human oral microbiome as forensic biomarkers for individual identification: A systematic review
    Vezhavendhan Nagaraj, Vidhya Arumugam, Sivaramakrishnan Muthanandam, Santhadevy Arumugam, Dhamodharan Ramasamy
    Indian Journal of Microbiology Research.2024; 11(4): 230.     CrossRef
  • Whole-genome resequencing highlights the phycosphere microbial network in global populations of the edible kelp Undaria pinnatifida
    Jihoon Jo, Hyun Hee Hong, Louis Graf, Che Ok Jeon, Hwan Su Yoon
    Algal Research.2024; 82: 103656.     CrossRef
  • Overlooked drivers of the greenhouse effect: The nutrient-methane nexus mediated by submerged macrophytes
    Jichun Mu, Zhenhan Li, Quanlin Lu, Hongwei Yu, Chengzhi Hu, Yujing Mu, Jiuhui Qu
    Water Research.2024; 266: 122316.     CrossRef
  • The diversity of endophytic fungi in Tartary buckwheat (Fagopyrum tataricum) and its correlation with flavonoids and phenotypic traits
    Meiqi Chen, Ziqi Ding, Min Zhou, Yukun Shang, Chenglei Li, Qingfeng Li, Tongliang Bu, Zizhong Tang, Hui Chen
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • A metagenomic assessment of bacterial community in spices sold open-air markets in Saint-Louis, Senegal
    Sarbanding Sané, Abou Abdallah Malick Diouara, Seynabou Coundoul, Sophie Déli Tene, Alé Kane, Serigne Fallou Wade, Abdoulaye Tamba, Mamadou Diop, Mame Ndew Mbaye, Fatou Thiam, Modou Dieng, Malick Mbengue, Cheikh Momar Nguer, Aminata Diassé Sarr, Ababacar
    Scientific Reports.2024;[Epub]     CrossRef
  • Community Diversity of Fungi Carried by Four Common Woodpeckers in Heilongjiang Province, China
    Wenhui Shi, Iram Maqsood, Keying Liu, Meichen Yu, Yuhui Si, Ke Rong
    Journal of Fungi.2024; 10(6): 389.     CrossRef
  • Use of microbiological data for the purposes of forensic medical examination
    O.S. Lavrukova, N.A. Sidorova
    Forensic Medical Expertise.2024; 67(5): 55.     CrossRef
  • Integrating microbiome and transcriptome analyses to understand the effect of replacing fishmeal with Tenebrio molitor meal in Pacific white shrimp (Litopenaeus vannamei) diets
    Yudong Zheng, Cuihong Hou, Jian Chen, Hongming Wang, Hang Yuan, Naijie Hu, Lili Shi, Shuang Zhang
    Aquaculture.2023; 575: 739818.     CrossRef
  • The Future Is Now: Unraveling the Expanding Potential of Human (Necro)Microbiome in Forensic Investigations
    Ana Cláudia-Ferreira, Daniel José Barbosa, Veroniek Saegeman, Amparo Fernández-Rodríguez, Ricardo Jorge Dinis-Oliveira, Ana R. Freitas
    Microorganisms.2023; 11(10): 2509.     CrossRef
  • Plant-microbiome interactions under drought—insights from the molecular machinist’s toolbox
    Mohamed Ait-El-Mokhtar, Abdelilah Meddich, Marouane Baslam
    Frontiers in Sustainable Food Systems.2023;[Epub]     CrossRef
  • ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning
    Olga Mineeva, Daniel Danciu, Bernhard Schölkopf, Ruth E. Ley, Gunnar Rätsch, Nicholas D. Youngblut, Luis Pedro Coelho
    PLOS Computational Biology.2023; 19(5): e1011001.     CrossRef
  • Response of dissolved organic matter (DOM) and microbial community to submerged macrophytes restoration in lakes: A review
    Haoyu Ren, Guoxi Wang, Wanchang Ding, He Li, Xian Shen, Dongbo Shen, Xia Jiang, Abdul Qadeer
    Environmental Research.2023; 231: 116185.     CrossRef
  • Integrative approach for classifying male tumors based on DNA methylation 450K data
    Ji-Ming Wu, Wang-Ren Qiu, Zi Liu, Zhao-Chun Xu, Shou-Hua Zhang
    Mathematical Biosciences and Engineering.2023; 20(11): 19133.     CrossRef
  • Impact of coprophagy prevention on the growth performance, serum biochemistry, and intestinal microbiome of rabbits
    Zhitong Wang, Hui He, Mengjuan Chen, Mengke Ni, Dongdong Yuan, Hanfang Cai, Zhi Chen, Ming Li, Huifen Xu
    BMC Microbiology.2023;[Epub]     CrossRef
  • The roles of gut microbiota and its metabolites in diabetic nephropathy
    Hui Zhao, Cheng-E Yang, Tian Liu, Ming-Xia Zhang, Yan Niu, Ming Wang, Jun Yu
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Structure and ecological function of the soil microbiome associated with ‘Sanghuang’ mushrooms suffering from fungal diseases
    Weifang Xu, Tao Sun, Jiahui Du, Shuqing Jin, Ying Zhang, Guofa Bai, Wanyu Li, Dengke Yin
    BMC Microbiology.2023;[Epub]     CrossRef
  • Analysis of differences in tobacco leaf microbial communities after redrying in Chinese provinces and from abroad
    Yifan Zhang, Qiang Xu, Mengmeng Yang, Yue Yang, Jincun Fu, Chenlin Miao, Guiyao Wang, Liwei Hu, Zongyu Hu
    AMB Express.2023;[Epub]     CrossRef
  • Learning from mistakes: challenges in finding holobiont factors from environmental samples and the importance of methodological consistency
    So Fujiyoshi, Kyoko Yarimizu, Ishara Perera, Michel Abanto, Milko Jorquera, Fumito Maruyama
    Current Opinion in Biotechnology.2023; 80: 102897.     CrossRef
  • Structural and functional characteristics of soil microbial community in a Pinus massoniana forest at different elevations
    Jian Zhang, Ming Xu, Xiao Zou, Jin Chen
    PeerJ.2022; 10: e13504.     CrossRef
  • Does filter pore size introduce bias in DNA sequence-based plankton community studies?
    Guolin Ma, Ramiro Logares, Yuanyuan Xue, Jun Yang
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • What will polyethylene film mulching bring to the root-associated microbial community of Paeonia ostii?
    Yingdan Yuan, Mengting Zu, Jiajia Zuo, Runze Li, Jun Tao
    Applied Microbiology and Biotechnology.2022; 106(12): 4737.     CrossRef
  • Differences in Supragingival Microbiome in Patients with and without Full-Crown Prostheses
    Manli Guo, Zhidong Zhang, Jiyuan Lu, Di Wang, Yimin Yan, Shen Zhang, Xin Yu, Songhua Su, Lu Yuan, Zhige Li, Baoping Zhang
    Dentistry Journal.2022; 10(8): 152.     CrossRef
  • Recent advances in droplet microfluidics for microbiology
    Ziyi He, Hao Wu, Xianghua Yan, Wu Liu
    Chinese Chemical Letters.2022; 33(4): 1729.     CrossRef
  • The root microbiome: Community assembly and its contributions to plant fitness
    Bo Bai, Weidong Liu, Xingyu Qiu, Jie Zhang, Jingying Zhang, Yang Bai
    Journal of Integrative Plant Biology.2022; 64(2): 230.     CrossRef
  • Analysis on the Structure and Function of the Bacterial Community in the Replanting Soil of Basswood of Ganoderma lingzhi Medicinal Mushroom (Agaricomycetes)
    Tiantian Wang, Wenxin Liu, Jize Xu, Muhammad Idrees, Yi Zhou, Guangbo Xu, Jian Shen, Chunlan Zhang
    International Journal of Medicinal Mushrooms.2022; 24(10): 45.     CrossRef
  • Ecosystem-specific microbiota and microbiome databases in the era of big data
    Victor Lobanov, Angélique Gobet, Alyssa Joyce
    Environmental Microbiome.2022;[Epub]     CrossRef
  • Omics-based microbiome analysis in microbial ecology: from sequences to information
    Jang-Cheon Cho
    Journal of Microbiology.2021; 59(3): 229.     CrossRef
  • Monitoring of plankton diversity in Dianchi Lake by environmental DNA technology
    Liwei He, Lijuan Zhang, Jianghua Yang, Zheng Zhao, Xiaohua Zhou, Qing Feng, Xiaowei Zhang, Shan Xu
    IOP Conference Series: Earth and Environmental Science.2021; 651(4): 042023.     CrossRef
  • Fecal Microbiome Composition Does Not Predict Diet‐Induced TMAO Production in Healthy Adults
    Marc Ferrell, Peter Bazeley, Zeneng Wang, Bruce S. Levison, Xinmin S. Li, Xun Jia, Ronald M. Krauss, Rob Knight, Aldons J. Lusis, J. C. Garcia‐Garcia, Stanley L. Hazen, W. H. Wilson Tang
    Journal of the American Heart Association.2021;[Epub]     CrossRef
  • Roles of Gut Microbial Metabolites in Diabetic Kidney Disease
    Qing Fang, Na Liu, Binjie Zheng, Fei Guo, Xiangchang Zeng, Xinyi Huang, Dongsheng Ouyang
    Frontiers in Endocrinology.2021;[Epub]     CrossRef
  • A Review of the Molluscan Microbiome: Ecology, Methodology and Future
    Bridget Chalifour, Jingchun Li
    Malacologia.2021;[Epub]     CrossRef
  • Microbial-induced concrete corrosion under high-salt conditions: Microbial community composition and environmental multivariate association analysis
    Jingya Zhou, Shouyi Yin, Qionglin Fu, Qingqing Wang, Qing Huang, Junfeng Wang
    International Biodeterioration & Biodegradation.2021; 164: 105287.     CrossRef
  • User guides for biologists to learn computational methods
    Dokyun Na
    Journal of Microbiology.2020; 58(3): 173.     CrossRef
  • High-throughput cultivation based on dilution-to-extinction with catalase supplementation and a case study of cultivating acI bacteria from Lake Soyang
    Suhyun Kim, Miri S. Park, Jaeho Song, Ilnam Kang, Jang-Cheon Cho
    Journal of Microbiology.2020; 58(11): 893.     CrossRef
Analysis of a bac operon-silenced strain suggests pleiotropic effects of bacilysin in Bacillus subtilis
Ozan Ertekin , Meltem Kutnu , Aslı Aras Ta&# , Mustafa Demir , Ayten Yazgan Karata&# , Gülay Özcengiz
J. Microbiol. 2020;58(4):297-313.   Published online January 28, 2020
DOI: https://doi.org/10.1007/s12275-020-9064-0
  • 405 View
  • 0 Download
  • 8 Web of Science
  • 9 Crossref
AbstractAbstract PDF
Bacilysin, as the simplest peptide antibiotic made up of only L-alanine and L-anticapsin, is produced and excreted by Bacillus subtilis under the control of quorum sensing. We analyzed bacilysin-nonproducing strain OGU1 which was obtained by bacA-targeted pMutin T3 insertion into the parental strain genome resulting in a genomic organization (bacA􍿁::lacZ::erm::bacABCDEF) to form an IPTG-inducible bac operon. Although IPTG induction provided 3- to 5-fold increment in the transcription of bac operon genes, no bacilysin activity was detectable in bioassays and inability of the OGU1 to form bacilysin was confirmed by UPLC-mass spectrometry analysis. Phenotypic analyses revealed the deficiencies in OGU1 with respect to colony pigmentation, spore coat proteins, spore resistance and germination, which could be rescued by external addition of bacilysin concentrate into its cultures. 2DE MALDI-TOF/MS and nanoLC-MS/MS were used as complementary approaches to compare cytosolic proteomes of OGU1. 2-DE identified 159 differentially expressed proteins corresponding to 121 distinct ORFs. In nanoLCMS/ MS, 76 proteins were differentially expressed in OGU1. Quantitative transcript analyses of selected genes validated the proteomic findings. Overall, the results pointed to the impact of bacilysin on expression of certain proteins of sporulation and morphogenesis; the members of mother cell compartment- specific σE and σK regulons in particular, quorum sensing and two component-global regulatory systems, peptide transport, stress response as well as CodY- and ScoCregulated proteins.

Citations

Citations to this article as recorded by  
  • Exploring Bacillus velezensis in a biomedical context: a systematic review
    Eduarda Guimarães Sousa, Gabriela Munis Campos, Ludmila Silva Quaresma, Thaís Fernandes Mendonça Mota, Nédia de Castilhos Ghisi, Gabriel Camargos Gomes, Rhayane Cristina Viegas Santos, Beatriz Gamarano Rocha de Souza, Éric Guédon, Siomar de Castro Soares,
    Academia Molecular Biology and Genomics.2025;[Epub]     CrossRef
  • The direct regulatory effects of Bacilysin on the cellular physiology of Bacillus subtilis
    Büşra Öztürk Baykal, Hadeel Waleed Abdulmalek AlJirjees, Can Holyavkin, Ayten Yazgan-Karataş
    Annals of Microbiology.2025;[Epub]     CrossRef
  • Biocontrol Ability of Strain Bacillus amyloliquefaciens SQ-2 against Table Grape Rot Caused by Aspergillus tubingensis
    Suran Li, Shuangshuang Dai, Lei Huang, Yumeng Cui, Ming Ying
    Journal of Agricultural and Food Chemistry.2024; 72(44): 24374.     CrossRef
  • Isolation and identification of a novel Bacillus velezensis strain JIN4 and its potential for biocontrol of kiwifruit bacterial canker caused by Pseudomonas syringae pv. actinidiae
    Xin Zhao, Yang Zhai, Lin Wei, Fei Xia, Yuanru Yang, Yongjian Yi, Hongying Wang, Caisheng Qiu, Feng Wang, Liangbin Zeng
    Frontiers in Plant Science.2024;[Epub]     CrossRef
  • Signatures of kin selection in a natural population of the bacteria Bacillus subtilis
    Laurence J Belcher, Anna E Dewar, Chunhui Hao, Melanie Ghoul, Stuart A West
    Evolution Letters.2023; 7(5): 315.     CrossRef
  • Comparative biological network analysis for differentially expressed proteins as a function of bacilysin biosynthesis in Bacillus subtilis
    Meltem Kutnu, Elif Tekin İşlerel, Nurcan Tunçbağ, Gülay Özcengiz
    Integrative Biology.2022; 14(5): 99.     CrossRef
  • Probiotic effects of the Bacillus velezensis GY65 strain in the mandarin fish, Siniperca chuatsi
    Jiachuan Wang, Defeng Zhang, Yajun Wang, Zhijun Liu, Lijuan Liu, Cunbin Shi
    Aquaculture Reports.2021; 21: 100902.     CrossRef
  • Bacilysin within the Bacillus subtilis group: gene prevalence versus antagonistic activity against Gram-negative foodborne pathogens
    Catherine Nannan, Huong Quynh Vu, Annika Gillis, Simon Caulier, Thuy Thanh Thi Nguyen, Jacques Mahillon
    Journal of Biotechnology.2021; 327: 28.     CrossRef
  • Impact of spatial proximity on territoriality among human skin bacteria
    Jhonatan A. Hernandez-Valdes, Lu Zhou, Marcel P. de Vries, Oscar P. Kuipers
    npj Biofilms and Microbiomes.2020;[Epub]     CrossRef
Exploring the antibiotic resistome in activated sludge and anaerobic digestion sludge in an urban wastewater treatment plant via metagenomic analysis
Keunje Yoo , Hyunji Yoo , Jangho Lee , Eun Joo Choi , Joonhong Park
J. Microbiol. 2020;58(2):123-130.   Published online December 23, 2019
DOI: https://doi.org/10.1007/s12275-020-9309-y
  • 421 View
  • 0 Download
  • 64 Web of Science
  • 54 Crossref
AbstractAbstract PDF
Antibiotic resistance genes (ARGs) are emerging contaminants that pose a potential threat to human health worldwide. Urban wastewater treatment plants (WWTPs) are a main source of both antibiotic-resistant bacteria and ARGs released into the environment. Nevertheless, the propagation of ARGs and their underlying mechanisms and the dynamics of mobile genetic elements (MGEs) in WWTPs have rarely been investigated in South Korea. In this study, shotgun metagenomic analysis was used to identify comprehensive ARGs and their mechanisms, bacterial communities, and MGEs from 4 configurations with 2 activated sludge (AS) and 2 anaerobic digestion sludge (ADS) samples. A total of 181 ARG subtypes belonging to 22 ARG types were broadly detected, and the ARG abundances in the AS samples were 1.3–2.0 orders of magnitude higher than in the ADS samples. Multidrug and bacitracin resistance genes were the predominant ARG types in AS samples, followed by ARGs against sulfonamide, tetracycline, and β-lactam. However, the composition of ARG types in ADS samples was significantly changed. The abundance of multidrug and β-lactam resistance genes was drastically reduced in the ADS samples. The resistance genes of MLS were the predominant, followed by ARGs against sulfonamide and tetracycline in the ADS samples. In addition, plasmids were the dominant MGEs in the AS samples, while integrons (intI1) were the dominant MGEs in the ADS samples. These results provide valuable information regarding the prevalence of ARG types and MGEs and the difference patterns between the AS and ADS systems.

Citations

Citations to this article as recorded by  
  • Proximity‐Ligation Metagenomic Sequence Analysis Reveals That the Antibiotic Resistome Makes Significant Transitions During Municipal Wastewater Treatment
    Cassandra B. McCorison, Taegyu Kim, Justin J. Donato, Timothy M. LaPara
    Environmental Microbiology.2025;[Epub]     CrossRef
  • Metatranscriptomic time series insight into antibiotic resistance genes and mobile genetic elements in wastewater systems under antibiotic selective pressure
    An-Dong Li, Yuanfang Chen, Lei Han, Ye Li, Ming Xu, Baoli Zhu
    BMC Microbiology.2025;[Epub]     CrossRef
  • Bacterial and DNA contamination of a small freshwater waterway used for drinking water after a large precipitation event
    Carolina Oliveira de Santana, Pieter Spealman, David Gresham, M. Elias Dueker, Gabriel G. Perron
    Science of The Total Environment.2025; 972: 179010.     CrossRef
  • Particle size of zero-valent iron affects the risks from antibiotic resistance genes in waste activated sludge during anaerobic digestion
    Lina Pang, Jianglin Chen, Wenqian Li, Efthalia Chatzisymeon, Kailin Xu, Ping Yang
    Journal of Hazardous Materials.2025; 490: 137785.     CrossRef
  • Antibiotic resistance genes in anaerobic digestion: Unresolved challenges and potential solutions
    Chunxiao Wang, Xiaole Yin, Xiaoqing Xu, Dou Wang, Yubo Wang, Tong Zhang
    Bioresource Technology.2025; 419: 132075.     CrossRef
  • Spatiotemporal distribution of the planktonic microbiome and antibiotic resistance genes in a typical urban river contaminated by macrolide antibiotics
    Chuanmao Yang, Shiwei Yan, Baihuan Zhang, Xiunan Yao, Jiezhang Mo, Fozia Rehman, Jiahua Guo
    Environmental Research.2024; 262: 119808.     CrossRef
  • Resistomes in freshwater bioaerosols and their impact on drinking and recreational water safety: A perspective
    Salametu Saibu, Ishara Uhanie Perera, Satoru Suzuki, Xavier Rodó, So Fujiyoshi, Fumito Maruyama
    Environment International.2024; 183: 108377.     CrossRef
  • An evaluation of conventional and nature-based technologies for controlling antibiotic-resistant bacteria and antibiotic-resistant genes in wastewater treatment plants
    Moushumi Hazra, Joy E.M. Watts, John B. Williams, Himanshu Joshi
    Science of The Total Environment.2024; 917: 170433.     CrossRef
  • Sewage sludge: A review of its risks and circular raw material potential
    Halyna Kominko, Katarzyna Gorazda, Zbigniew Wzorek
    Journal of Water Process Engineering.2024; 63: 105522.     CrossRef
  • Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater
    Nafi’u Abdulkadir, Joao Pedro Saraiva, Junya Zhang, Stefan Stolte, Osnat Gillor, Hauke Harms, Ulisses Rocha, Adriana E. Rosato
    Microbiology Spectrum.2024;[Epub]     CrossRef
  • A review of wastewater-based epidemiology for antimicrobial resistance surveillance
    Leah M. Clarke, Jake W. O’Brien, Aimee K. Murray, William H. Gaze, Kevin V. Thomas
    Journal of Environmental Exposure Assessment.2024;[Epub]     CrossRef
  • Antibiotic Resistance Genes – An Emerging Genetic Pollutant of LFL
    Jennet Debora J., Vijayalakshmi V., Rajaguru P., Rajeswari S., Brindha R.
    Water, Air, & Soil Pollution.2024;[Epub]     CrossRef
  • Unveiling the hidden hazards of smog: health implications and antibiotic resistance in perspective
    Muhammad Imran Khan, Arshia Amin, Muhammad Tariq Khan, Hafsa Jabeen, Shafqat Rasul Chaudhry
    Aerobiologia.2024; 40(3): 353.     CrossRef
  • Marine plastisphere selectively enriches microbial assemblages and antibiotic resistance genes during long-term cultivation periods
    Hyunsu Kim, Keunje Yoo
    Environmental Pollution.2024; 344: 123450.     CrossRef
  • Microbial symbiotic electrobioconversion of carbon dioxide to biopolymer (poly (3-hydroxybutyrate)) via single-step microbial electrosynthesis cell
    Giang T.H. Le, Hend Omar Mohamed, Hyunsu Kim, Keunje Yoo, Tasnim Eisa, Dipak A. Jadhav, Ha T.T. Nguyen, Hyerim Eam, Jaewook Myung, Pedro Castaño, Kyu-Jung Chae
    Chemical Engineering Journal.2024; 500: 156635.     CrossRef
  • Performance of sewage sludge treatment for the removal of antibiotic resistance genes: Status and prospects
    Shiyu Yin, Le Gao, Xiumin Fan, Shuhong Gao, Xu Zhou, Wenbiao Jin, Zhongqi He, Qilin Wang
    Science of The Total Environment.2024; 907: 167862.     CrossRef
  • Impacts of microplastic type on the fate of antibiotic resistance genes and horizontal gene transfer mechanism during anaerobic digestion
    Ming Xu, Peng Gao, Yuan Gao, Shi-jin Xiong, Hao-qiang Chen, Xiao-xiao Shen
    Journal of Environmental Management.2024; 360: 121090.     CrossRef
  • Quaternary ammonia compounds in disinfectant products: evaluating the potential for promoting antibiotic resistance and disrupting wastewater treatment plant performance
    Zihao Lu, Anna K. Mahony, William A. Arnold, Christopher W. Marshall, Patrick J. McNamara
    Environmental Science: Advances.2024; 3(2): 208.     CrossRef
  • Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples
    Xiaole Yin, Xi Chen, Xiao-Tao Jiang, Ying Yang, Bing Li, Marcus Ho-Hin Shum, Tommy T. Y. Lam, Gabriel M. Leung, Joan Rose, Concepcion Sanchez-Cid, Timothy M. Vogel, Fiona Walsh, Thomas U. Berendonk, Janet Midega, Chibuzor Uchea, Dominic Frigon, Gerard D.
    Environmental Science & Technology.2023; 57(26): 9713.     CrossRef
  • Catch me if you can: capturing microbial community transformation by extracellular DNA using Hi-C sequencing
    David Calderón-Franco, Mark C. M. van Loosdrecht, Thomas Abeel, David G. Weissbrodt
    Antonie van Leeuwenhoek.2023; 116(7): 667.     CrossRef
  • Effects of micron-scale zero valent iron on behaviors of antibiotic resistance genes and pathogens in thermophilic anaerobic digestion of waste activated sludge
    Wenqian Li, Lina Pang, Efthalia Chatzisymeon, Ping Yang
    Bioresource Technology.2023; 376: 128895.     CrossRef
  • Exploring antibiotic resistance genes, mobile gene elements, and virulence gene factors in an urban freshwater samples using metagenomic analysis
    Sohail M. Noman, Muhammad Shafiq, Shabana Bibi, Bharti Mittal, Yumeng Yuan, Mi Zeng, Xin Li, Oluwaseyi Abraham Olawale, Xiaoyang Jiao, Muhammad Irshad
    Environmental Science and Pollution Research.2023; 30(2): 2977.     CrossRef
  • Mining-related multi-resistance genes in sulfate-reducing bacteria treatment of typical karst nonferrous metal(loid) mine tailings in China
    Jian-li Liu, Jun Yao, De-liang Zhou, Bang Liu, Houquan Liu, Miaomiao Li, Chenchen Zhao, Geoffrey Sunahara, Robert Duran
    Environmental Science and Pollution Research.2023; 30(47): 104753.     CrossRef
  • Variations in antibiotic resistance genes and microbial community in sludges passing through biological nutrient removal and anaerobic digestion processes in municipal wastewater treatment plants
    Shahbaz Raza, Kyeong Hwan Kang, Juhee Shin, Seung Gu Shin, Jihyun Chun, Hyun Uk Cho, Jingyeong Shin, Young Mo Kim
    Chemosphere.2023; 313: 137362.     CrossRef
  • Drinking water sources as hotspots of antibiotic-resistant bacteria (ARB) and antibiotic resistance genes (ARGs): Occurrence, spread, and mitigation strategies
    Shengnan Li, Brim Stevy Ondon, Shih-Hsin Ho, Qixing Zhou, Fengxiang Li
    Journal of Water Process Engineering.2023; 53: 103907.     CrossRef
  • Co-Existence and Proliferation of Heavy Metal and Antibiotic Resistance in Urban Sewage Treatment Plants
    Sonia Gupta, T. R. Sreekrishnan, Shaikh Ziauddin Ahammad
    SSRN Electronic Journal .2022;[Epub]     CrossRef
  • Mining-Related Multi-Resistance Genes in Typical Nonferrous Metal(Loid) Tailing Impoundments Under Bio-Restoration
    Jianli Liu, Jun Yao, Deliang Zhou, Hao Li, Bang Liu, Houquan Liu, Miaomiao Li, Chenchen Zhao, Geoffrey Sunahara, Robert Duran
    SSRN Electronic Journal .2022;[Epub]     CrossRef
  • A review of the emergence of antibiotic resistance in bioaerosols and its monitoring methods
    Gihan Lee, Keunje Yoo
    Reviews in Environmental Science and Bio/Technology.2022; 21(3): 799.     CrossRef
  • Lime addition significantly attenuates tetracycline resistance genes and class 1 integrons in dewatered sludge by affecting bacterial profiles
    Maoxia Chen, Jiali Chang, Tao Jiang, Shiqian Wei, Jiawei Zou, Juan Yang, Xuguang Ma
    Journal of Environmental Chemical Engineering.2022; 10(3): 107429.     CrossRef
  • Fate of antibiotic resistant genes in wastewater environments and treatment strategies - A review
    Ranjith Kumar Manoharan, Fahmida Ishaque, Young-Ho Ahn
    Chemosphere.2022; 298: 134671.     CrossRef
  • mobileOG-db: a Manually Curated Database of Protein Families Mediating the Life Cycle of Bacterial Mobile Genetic Elements
    Connor L. Brown, James Mullet, Fadi Hindi, James E. Stoll, Suraj Gupta, Minyoung Choi, Ishi Keenum, Peter Vikesland, Amy Pruden, Liqing Zhang, Hideaki Nojiri
    Applied and Environmental Microbiology.2022;[Epub]     CrossRef
  • The prevalence and removal of antibiotic resistance genes in full-scale wastewater treatment plants: Bacterial host, influencing factors and correlation with nitrogen metabolic pathway
    Qian Ping, Zhipeng Zhang, Liping Ma, Tingting Yan, Lin Wang, Yongmei Li
    Science of The Total Environment.2022; 827: 154154.     CrossRef
  • Effects of heavy metals on the development and proliferation of antibiotic resistance in urban sewage treatment plants
    Sonia Gupta, T.R. Sreekrishnan, Shaikh Ziauddin Ahammad
    Environmental Pollution.2022; 308: 119649.     CrossRef
  • Mining-Related Multi-Resistance Genes in Typical Nonferrous Metal(Loid) Tailing Impoundments Under Bio-Restoration
    Jianli Liu, Jun Yao, Deliang Zhou, Hao Li, Bang Liu, Houquan Liu, Miaomiao Li, Chenchen Zhao, Geoffrey Sunahara, Robert Duran
    SSRN Electronic Journal .2022;[Epub]     CrossRef
  • Genetic and genomic characterization of multidrug resistant Bacillus subtilis M3 isolated from an activated sludge reactor treating wastewater
    Hafeez Ul Haq, Wei Huang, Ye Li, Ting Zhang, Shaocheng Ma, Yajing Zhang, Yongkang Song, Daiyan Lin, Baoyu Tian
    Biologia.2022; 77(4): 1151.     CrossRef
  • Wastewater treatment plants as reservoirs and sources for antibiotic resistance genes: A review on occurrence, transmission and removal
    Yu-Xi Gao, Xing Li, Xiao-Yan Fan, Jun-Ru Zhao, Zhong-Xing Zhang
    Journal of Water Process Engineering.2022; 46: 102539.     CrossRef
  • Metagenomics analysis of probable transmission of determinants of antibiotic resistance from wastewater to the environment – A case study
    Wiktor Zieliński, Jakub Hubeny, Martyna Buta-Hubeny, Damian Rolbiecki, Monika Harnisz, Łukasz Paukszto, Ewa Korzeniewska
    Science of The Total Environment.2022; 827: 154354.     CrossRef
  • Impact of Anthropogenic Activities on the Dissemination of ARGs in the Environment—A Review
    Małgorzata Czatzkowska, Izabela Wolak, Monika Harnisz, Ewa Korzeniewska
    International Journal of Environmental Research and Public Health.2022; 19(19): 12853.     CrossRef
  • Higher abundance of core antimicrobial resistant genes in effluent from wastewater treatment plants
    Shahbaz Raza, Hanseob Shin, Hor-Gil Hur, Tatsuya Unno
    Water Research.2022; 208: 117882.     CrossRef
  • Metagenomic Analysis Reveals the Fate of Antibiotic Resistance Genes in a Full-Scale Wastewater Treatment Plant in Egypt
    Osama S. Ali, Walaa G. Hozayen, Abdulwahab S. Almutairi, Sherif A. Edris, Aala A. Abulfaraj, Amged A. Ouf, Hamada M. Mahmoud
    Sustainability.2021; 13(20): 11131.     CrossRef
  • Shotgun metagenomic analysis reveals the prevalence of antibiotic resistance genes and mobile genetic elements in full scale hospital wastewater treatment plants
    Ranjith Kumar Manoharan, Sathiyaraj Srinivasan, Gnanendra Shanmugam, Young-Ho Ahn
    Journal of Environmental Management.2021; 296: 113270.     CrossRef
  • Employing bacteria machinery for antibiotic detection: Using DNA gyrase for ciprofloxacin detection
    Ana R. Cardoso, Liliana P.T. Carneiro, Gustavo Cabral-Miranda, Martin F. Bachmann, M. Goreti F. Sales
    Chemical Engineering Journal.2021; 409: 128135.     CrossRef
  • Gain and loss of antibiotic resistant genes in multidrug resistant bacteria: One Health perspective
    Misung Kim, Jaeeun Park, Mingyeong Kang, Jihye Yang, Woojun Park
    Journal of Microbiology.2021; 59(6): 535.     CrossRef
  • Monitoring antibiotic resistance genes in wastewater treatment: Current strategies and future challenges
    Anh Q. Nguyen, Hang P. Vu, Luong N. Nguyen, Qilin Wang, Steven P. Djordjevic, Erica Donner, Huabing Yin, Long D. Nghiem
    Science of The Total Environment.2021; 783: 146964.     CrossRef
  • Agricultural Soils Amended With Thermally-Dried Anaerobically-Digested Sewage Sludge Showed Increased Risk of Antibiotic Resistance Dissemination
    Leire Jauregi, Lur Epelde, Itziar Alkorta, Carlos Garbisu
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Antibiotic resistome from the One-Health perspective: understanding and controlling antimicrobial resistance transmission
    Dae-Wi Kim, Chang-Jun Cha
    Experimental & Molecular Medicine.2021; 53(3): 301.     CrossRef
  • Occurrence and Distribution of Antibiotic Resistance Genes in Municipal Wastewater Treatment Plants with D-Type Filters
    Haoze Wang, Bing Li, Jiaheng Zhao, Yongjing Tian, Yong Qiu
    Water.2021; 13(23): 3398.     CrossRef
  • Mining-Related Multi-Resistance Genes in Typical Karst Nonferrous Metal(Loid) Tailing Impoundments Under Bio-Restoration
    Jianli Liu, Jun Yao, Deliang Zhou, Hao Li, Bang Liu, Weihua Cui, Xinyuan Li, Hang Meng, Robert Duran
    SSRN Electronic Journal .2021;[Epub]     CrossRef
  • Role of anaerobic sludge digestion in handling antibiotic resistant bacteria and antibiotic resistance genes – A review
    Achmad Syafiuddin, Raj Boopathy
    Bioresource Technology.2021; 330: 124970.     CrossRef
  • Investigation of the Prevalence of Antibiotic Resistance Genes According to the Wastewater Treatment Scale Using Metagenomic Analysis
    Keunje Yoo, Gihan Lee
    Antibiotics.2021; 10(2): 188.     CrossRef
  • Remediating oxytetracycline-contaminated aquaculture water using nano calcium peroxide (nCaO2) produced from flue gas desulfurization (FGD) gypsum
    Piyarat Vijuksungsith, Tunlawit Satapanajaru, Chanat Chokejaroenrat, Chalor Jarusutthirak, Chainarong Sakulthaew, Ann Kambhu, Rattana Boonprasert
    Environmental Technology & Innovation.2021; 24: 101861.     CrossRef
  • Metagenomic exploration of antibiotic resistome in treated wastewater effluents and their receiving water
    Shahbaz Raza, Hyejun Jo, Jungman Kim, Hanseob Shin, Hor-Gil Hur, Tatsuya Unno
    Science of The Total Environment.2021; 765: 142755.     CrossRef
  • Effects of prescription antibiotics on soil- and root-associated microbiomes and resistomes in an agricultural context
    Francisco Cerqueira, Anastasis Christou, Despo Fatta-Kassinos, Maria Vila-Costa, Josep Maria Bayona, Benjamin Piña
    Journal of Hazardous Materials.2020; 400: 123208.     CrossRef
  • Metagenomic Profiles of Antibiotic Resistance Genes in Activated Sludge, Dewatered Sludge and Bioaerosols
    Il Han, Keunje Yoo
    Water.2020; 12(6): 1516.     CrossRef
Antarctic tundra soil metagenome as useful natural resources of cold-active lignocelluolytic enzymes
Han Na Oh , Doyoung Park , Hoon Je Seong , Dockyu Kim , Woo Jun Sul
J. Microbiol. 2019;57(10):865-873.   Published online September 30, 2019
DOI: https://doi.org/10.1007/s12275-019-9217-1
  • 423 View
  • 0 Download
  • 22 Web of Science
  • 22 Crossref
AbstractAbstract PDF
Lignocellulose composed of complex carbohydrates and aromatic heteropolymers is one of the principal materials for the production of renewable biofuels. Lignocellulose-degrading genes from cold-adapted bacteria have a potential to increase the productivity of biological treatment of lignocellulose biomass by providing a broad range of treatment temperatures. Antarctic soil metagenomes allow to access novel genes encoding for the cold-active lignocellulose-degrading enzymes, for biotechnological and industrial applications. Here, we investigated the metagenome targeting cold-adapted microbes in Antarctic organic matter-rich soil (KS 2-1) to mine lignolytic and celluloytic enzymes by performing single molecule, real-time metagenomic (SMRT) sequencing. In the assembled Antarctic metagenomic contigs with relative long reads, we found that 162 (1.42%) of total 11,436 genes were annotated as carbohydrate-active enzymes (CAZy). Actinobacteria, the dominant phylum in this soil’s metagenome, possessed most of candidates of lignocellulose catabolic genes like glycoside hydrolase families (GH13, GH26, and GH5) and auxiliary activity families (AA7 and AA3). The predicted lignocellulose degradation pathways in Antarctic soil metagenome showed synergistic role of various CAZyme harboring bacterial genera including Streptomyces, Streptosporangium, and Amycolatopsis. From phylogenetic relationships with cellular and environmental enzymes, several genes having potential for participating in overall lignocellulose degradation were also found. The results indicated the presence of lignocellulose-degrading bacteria in Antarctic tundra soil and the potential benefits of the lignocelluolytic enzymes as candidates for cold-active enzymes which will be used for the future biofuel-production industry.

Citations

Citations to this article as recorded by  
  • Metagenomic insights into the lignocellulose degradation mechanism during short-term composting of peach sawdust: Core microbial community and carbohydrate-active enzyme profile analysis
    Wei-Wei Zhang, Yu-Xin Guo, Qing-Jun Chen, Yi-Yang Wang, Qiu-Ying Wang, Ya-Ru Yang, Guo-Qing Zhang
    Environmental Technology & Innovation.2025; 37: 103959.     CrossRef
  • Long-term fertilization legacy effects and temperatures regulate soil microbial function of crop straw decomposition in a greenhouse vegetable field
    Long Ma, Dongming Wu, Ruonan Li, Haoan Luan, Jiwei Tang, Liying Wang, Tengfei Guo, Chao Ai, Shaowen Huang
    Applied Soil Ecology.2025; 210: 106056.     CrossRef
  • Comprehensive characterization and resistome analysis of Antarctic Pseudomonas migulae strain CAS19
    Çiğdem Otur, Sezer Okay, Ömer Konuksever, Oğuzhan Duyar, Yılmaz Kaya, Aslıhan Kurt-Kızıldoğan
    World Journal of Microbiology and Biotechnology.2024;[Epub]     CrossRef
  • Response of carbohydrate-degrading enzymes and microorganisms to land use change in the southeastern Qinghai-Tibetan Plateau, China
    Renhuan Zhu, Belayneh Azene, Piotr Gruba, Kaiwen Pan, Yalemzewd Nigussie, Awoke Guadie, Xiaoming Sun, Xiaogang Wu, Lin Zhang
    Applied Soil Ecology.2024; 200: 105442.     CrossRef
  • Investigating eukaryotic and prokaryotic diversity and functional potential in the cold and alkaline ikaite columns in Greenland
    Mariane Schmidt Thøgersen, Athanasios Zervas, Peter Stougaard, Lea Ellegaard-Jensen
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Bacterial Diversity, Metabolic Profiling, and Application Potential of Antarctic Soil Metagenomes
    Mario Fernández, Salvador Barahona, Fernando Gutierrez, Jennifer Alcaíno, Víctor Cifuentes, Marcelo Baeza
    Current Issues in Molecular Biology.2024; 46(11): 13165.     CrossRef
  • Cold adaptation and response genes of Antarctic Cryobacterium sp. SO2 from the Fildes Peninsula, King George Island
    Chui Peng Teoh, Marcelo González‑Aravena, Paris Lavin, Clemente Michael Vui Ling Wong
    Polar Biology.2024; 47(2): 135.     CrossRef
  • A bacterial cold-active dye-decolorizing peroxidase from an Antarctic Pseudomonas strain
    Célica Cagide, Juan José Marizcurrena, Diego Vallés, Beatriz Alvarez, Susana Castro-Sowinski
    Applied Microbiology and Biotechnology.2023; 107(5-6): 1707.     CrossRef
  • Role of metagenomics in prospecting novel endoglucanases, accentuating functional metagenomics approach in second-generation biofuel production: a review
    Ninian Prem Prashanth Pabbathi, Aditya Velidandi, Tanvi Tavarna, Shreyash Gupta, Ram Sarvesh Raj, Pradeep Kumar Gandam, Rama Raju Baadhe
    Biomass Conversion and Biorefinery.2023; 13(2): 1371.     CrossRef
  • Different Response of Plant- and Microbial-Derived Carbon Decomposition Potential between Alpine Steppes and Meadows on the Tibetan Plateau
    Yanhong Yuan, Lan Chen, Jieying Wang, Yanfang Liu, Chengjie Ren, Yaoxin Guo, Jun Wang, Ninglian Wang, Fazhu Zhao, Wenying Wang
    Forests.2023; 14(8): 1580.     CrossRef
  • Investigation of cold-active and mesophilic cellulases: opportunities awaited
    Sambhaji Chavan, Ashvini Shete, Yasmin Mirza, Mahesh S. Dharne
    Biomass Conversion and Biorefinery.2023; 13(10): 8829.     CrossRef
  • Cold-Adapted Proteases: An Efficient and Energy-Saving Biocatalyst
    Zhengfeng Yang, Zhendi Huang, Qian Wu, Xianghua Tang, Zunxi Huang
    International Journal of Molecular Sciences.2023; 24(10): 8532.     CrossRef
  • Reclamation of abandoned saline-alkali soil increased soil microbial diversity and degradation potential
    Fating Yin, Fenghua Zhang
    Plant and Soil.2022; 477(1-2): 521.     CrossRef
  • Recent advances in metagenomic analysis of different ecological niches for enhanced biodegradation of recalcitrant lignocellulosic biomass
    Deepak Kukkar, Pushpender Kumar Sharma, Ki-Hyun Kim
    Environmental Research.2022; 215: 114369.     CrossRef
  • Novel bacterial taxa in a minimal lignocellulolytic consortium and their potential for lignin and plastics transformation
    Carlos Andrés Díaz Rodríguez, Laura Díaz-García, Boyke Bunk, Cathrin Spröer, Katherine Herrera, Natalia A Tarazona, Luis M Rodriguez-R, Jörg Overmann, Diego Javier Jiménez
    ISME Communications.2022;[Epub]     CrossRef
  • The Use of Response Surface Methodology as a Statistical Tool for the Optimisation of Waste and Pure Canola Oil Biodegradation by Antarctic Soil Bacteria
    Khadijah Nabilah Mohd Zahri, Azham Zulkharnain, Claudio Gomez-Fuentes, Suriana Sabri, Khalilah Abdul Khalil, Peter Convey, Siti Aqlima Ahmad
    Life.2021; 11(5): 456.     CrossRef
  • Comparison of Gut Microbiota between Gentoo and Adélie Penguins Breeding Sympatrically on Antarctic Ardley Island as Revealed by Fecal DNA Sequencing
    Yin-Xin Zeng, Hui-Rong Li, Wei Han, Wei Luo
    Diversity.2021; 13(10): 500.     CrossRef
  • Deconstruction of Lignin: From Enzymes to Microorganisms
    Jéssica P. Silva, Alonso R. P. Ticona, Pedro R. V. Hamann, Betania F. Quirino, Eliane F. Noronha
    Molecules.2021; 26(8): 2299.     CrossRef
  • Molecular Characterization of Novel Family IV and VIII Esterases from a Compost Metagenomic Library
    Jong-Eun Park, Geum-Seok Jeong, Hyun-Woo Lee, Hoon Kim
    Microorganisms.2021; 9(8): 1614.     CrossRef
  • Illite/smectite clay regulating laccase encoded genes to boost lignin decomposition and humus formation in composting habitats revealed by metagenomics analysis
    Qingran Meng, Susu Wang, Qiuqi Niu, Hailong Yan, Gen Li, Qiuhui Zhu, Qunliang Li
    Bioresource Technology.2021; 338: 125546.     CrossRef
  • Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer
    Ohana Y. A. Costa, Mattias de Hollander, Agata Pijl, Binbin Liu, Eiko E. Kuramae
    Microbiome.2020;[Epub]     CrossRef
  • Extremophile Microbial Communities and Enzymes for Bioenergetic Application Based on Multi-Omics Tools
    Gislaine Fongaro, Guilherme Augusto Maia, Paula Rogovski, Rafael Dorighello Cadamuro, Joana Camila Lopes, Renato Simões Moreira, Aline Frumi Camargo, Thamarys Scapini, Fábio Spitza Stefanski, Charline Bonatto, Doris Sobral Marques Souza, Patrícia Hermes
    Current Genomics.2020; 21(4): 240.     CrossRef
Evolution of a major bovine mastitic genotype (rpoB sequence type 10-2) of Staphylococcus aureus in cows
Dae-Sung Ko , Danil Kim , Eun-Kyung Kim , Jae-Hong Kim , Hyuk-Joon Kwon
J. Microbiol. 2019;57(7):587-596.   Published online June 27, 2019
DOI: https://doi.org/10.1007/s12275-019-8699-1
  • 394 View
  • 0 Download
  • 6 Web of Science
  • 5 Crossref
AbstractAbstract PDF
Staphylococcus aureus is the major pathogen leading to bovine mastitis globally while livestock-associated methicillin resistant S. aureus (LA-MRSA) has become a potential threat to public health. MRSA from bovine mastitis is not common but a methicillin susceptible S. aureus (MSSA) genotype, rpoB sequence type (RST)10-2 (RST10-2), is prevalent in Korea. To date, many genomic sequences from S. aureus have been elucidated, but the complete genome sequences of RST10-2 MSSA from bovine mastitis has never been reported. In this study, we determined the complete genome sequence of two RST10-2 MSSA that differ from each other in staphylococcal protein A and molecular prophage types [PMB64-1 (t2489/ mPPT0) and PMB81-4 (t127/mPPT1-2-3)] and conducted a comparative genomics study. The genomic sequences of PMB64-1 and PMB81-4 were more homologous to the representative human RST10-2 strains (MSSA476, MW2 etc.) compared to other RSTs. Most of them shared five common pseudogenes, along with high amino acid identity of four variable virulence genes that were identified in this study. However, PMB64-1 and PMB81-4 acquired different strainspecific pseudogenes and mobile genetic elements than the human strains. The unique pseudogene profile and high identity of the virulence genes were verified in RST10-2 field strains from bovine mastitis. Thus, bovine mastitic RST10-2 MSSA may have an evolutionary relationship with the human RST10- 2 community-associated (CA) MSSA and CA-MRSA strains but may have adapted to cows.

Citations

Citations to this article as recorded by  
  • Rapid Antibacterial Activity Assessment of Chimeric Lysins
    Jin-Mi Park, Jun-Hyun Kim, Gun Kim, Hun-Ju Sim, Sun-Min Ahn, Kang-Seuk Choi, Hyuk-Joon Kwon
    International Journal of Molecular Sciences.2024; 25(4): 2430.     CrossRef
  • Tracing the Evolutionary Pathways of Serogroup O78 Avian Pathogenic Escherichia coli
    Eun-Jin Ha, Seung-Min Hong, Seung-Ji Kim, Sun-Min Ahn, Ho-Won Kim, Kang-Seuk Choi, Hyuk-Joon Kwon
    Antibiotics.2023; 12(12): 1714.     CrossRef
  • Genetic characterization of Staphylococcus aureus isolated from Norway rats in Boston, Massachusetts
    Gracen R. Gerbig, Helen Piontkivska, Tara C. Smith, Ruairi White, Jean Mukherjee, Hayley Benson, Marieke Rosenbaum, Jessica H. Leibler
    Veterinary Medicine and Science.2023; 9(1): 272.     CrossRef
  • Rapid Screening and Comparison of Chimeric Lysins for Antibacterial Activity against Staphylococcus aureus Strains
    Jin-Mi Park, Dae-Sung Ko, Hee-Soo Kim, Nam-Hyung Kim, Eun-Kyoung Kim, Young-Hye Roh, Danil Kim, Jae-Hong Kim, Kang-Seuk Choi, Hyuk-Joon Kwon
    Antibiotics.2023; 12(4): 667.     CrossRef
  • Comparative genomics of bovine mastitis-origin Staphylococcus aureus strains classified into prevalent human genotypes
    Dae-Sung Ko, Nam-Hyung Kim, Eun-Kyung Kim, Eun-Jin Ha, Young-Hye Ro, Danil Kim, Kang-Seuk Choi, Hyuk-Joon Kwon
    Research in Veterinary Science.2021; 139: 67.     CrossRef
Carbohydrate metabolism genes dominant in a subtropical marine mangrove ecosystem revealed by metagenomics analysis
Huaxian Zhao , Bing Yan , Shuming Mo , Shiqing Nie , Quanwen Li , Qian Ou , Bo Wu , Gonglingxia Jiang , Jinli Tang , Nan Li , Chengjian Jiang
J. Microbiol. 2019;57(7):575-586.   Published online June 27, 2019
DOI: https://doi.org/10.1007/s12275-019-8679-5
  • 377 View
  • 1 Download
  • 24 Web of Science
  • 23 Crossref
AbstractAbstract PDF
Mangrove sediment microorganisms play a vital role in the energy transformation and element cycling in marine wetland ecosystems. Using metagenomics analysis strategy, we compared the taxonomic structure and gene profile of the mangrove and non-mangrove sediment samples at the subtropical estuary in Beibu Gulf, South China Sea. Proteobacteria, Bacteroidetes, and Firmicutes were the most abundant bacterial phyla. Archaeal family Methanosarcinaceae and bacterial genera Vibrio and Dehalococcoides were significantly higher in the mangrove sediments than in the nonmangrove sediments. Functional analysis showed that “Carbohydrate metabolism” was the most abundant metabolic category. The feature of carbohydrate-active enzymes (CZs) was analyzed using the Carbohydrate-Active EnZymes Database. The significant differences of CZs between mangrove and non-mangrove sediments, were attributed to the amounts of polyphenol oxidase (EC 1.10.3.-), hexosyltransferase (EC 2.4.1.-), and β-N-acetylhexosaminidase (EC 3.2.1.52), which were higher in the mangrove sediment samples. Principal component analysis indicated that the microbial community and gene profile between mangrove and non-mangrove sediments were distinct. Redundancy analysis showed that total organic carbon is a significant factor that affects the microbial community and gene distribution. The results indicated that the mangrove ecosystem with massive amounts of organic carbon may promote the richness of carbohydrate metabolism genes and enhance the degradation and utilization of carbohydrates in the mangrove sediments.

Citations

Citations to this article as recorded by  
  • Metagenomic and metatranscriptomic exploration of Avicennia germinans L.: Endophytic microbiome of leaves and roots
    César Alejandro Lemos-Lucumi, Valentina Cárdenas-Hernández, Nelson Toro-Perea
    Microbiological Research.2025; 300: 128287.     CrossRef
  • Integrated genome mining and molecular networking uncover the biosynthetic potential of a novel mangrove-derived strain Streptomyces sp. B1866
    Liyuan Jiang, Wenjin Hu, Jinling Qin, Baorui Teng, Siwei Chen, Dan Zhang, Hui Lei, XinLi Pan
    BMC Genomics.2025;[Epub]     CrossRef
  • Rhizosphere microbiomes and carbon dynamics in mangrove ecosystems are shaped by host species, patch age, and environmental drivers
    Mini Nishamol, Mayukhmita Ghose, Ajay Kumar, Cathrine Sumathi Manohar
    Rhizosphere.2025; 35: 101153.     CrossRef
  • Habitat variations of sediment microbial community structure and functions and the influential environmental factors in a Ramsar protected wetland in South China
    Kit-Ling Lam, Nora Fung-Yee Tam, Steven Jing-Liang Xu, Wing-Yin Mo, Yuet-Tung Tse, Kaze King-Yip Lai, Ping-Lung Chan, Fred Wang-Fat Lee
    Marine Pollution Bulletin.2024; 209: 117166.     CrossRef
  • Unraveling the role of bacterial communities in mangrove habitats under the urban influence, using a next-generation sequencing approach
    Mayukhmita Ghose, Ashutosh Shankar Parab, Cathrine Sumathi Manohar, Deepika Mohanan, Ashwini Toraskar
    Journal of Sea Research.2024; 198: 102469.     CrossRef
  • Living in mangroves: a syntrophic scenario unveiling a resourceful microbiome
    Marcele Laux, Luciane Prioli Ciapina, Fabíola Marques de Carvalho, Alexandra Lehmkuhl Gerber, Ana Paula C. Guimarães, Moacir Apolinário, Jorge Eduardo Santos Paes, Célio Roberto Jonck, Ana Tereza R. de Vasconcelos
    BMC Microbiology.2024;[Epub]     CrossRef
  • Metagenomic 16S rRNA analysis and predictive functional profiling revealed intrinsic organohalides respiration and bioremediation potential in mangrove sediment
    Sultan M. Alsharif, Mohamed Ismaeil, Ali M. Saeed, Wael S. El-Sayed
    BMC Microbiology.2024;[Epub]     CrossRef
  • Novosphingobium album sp. nov., Novosphingobium organovorum sp. nov. and Novosphingobium mangrovi sp. nov. with the organophosphorus pesticides degrading ability isolated from mangrove sediments
    Wenjin Hu, Zhe Li, Haisheng Ou, Xiaochun Wang, Qiaozhen Wang, Zhanhua Tao, Shushi Huang, Yuanlin Huang, Guiwen Wang, Xinli Pan
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Taxonomy and anticancer potential of Streptomyces niphimycinicus sp. nov. against nasopharyngeal carcinoma cells
    Yiying Huang, Wenjin Hu, Shushi Huang, Jiemei Chu, Yushan Liang, Zhanhua Tao, Guiwen Wang, Junlian Zhuang, Zhe Zhang, Xiaoying Zhou, Xinli Pan
    Applied Microbiology and Biotechnology.2023; 107(20): 6325.     CrossRef
  • Screening of marine sediment-derived microorganisms and their bioactive metabolites: a review
    Hongli Yao, Shuangping Liu, Tiantian Liu, Dongliang Ren, Qilin Yang, Zhilei Zhou, Jian Mao
    World Journal of Microbiology and Biotechnology.2023;[Epub]     CrossRef
  • Novosphingobium beihaiensis sp. nov., a novel pesticide-tolerant bacterium isolated from mangrove sediments
    Wenjin Hu, Yiying Huang, Yingjing Liu, Xiaoying Zhou, Shushi Huang, Jiemei Chu, Xinli Pan
    Antonie van Leeuwenhoek.2023; 116(11): 1151.     CrossRef
  • Mycolicibacterium aurantiacum sp. nov. and Mycolicibacterium xanthum sp. nov., two novel actinobacteria isolated from mangrove sediments
    Xinli Pan, Zhe Li, Shushi Huang, Yuanlin Huang, Qiaozhen Wang, Zhanhua Tao, Wenjin Hu
    International Journal of Systematic and Evolutionary Microbiology.2022;[Epub]     CrossRef
  • Role of calcium and magnesium on dramatic physiological and anatomical responses in tomato plants
    Ayshah A. ALRASHIDI, Haifa Abdulaziz Sakit ALHAITHLOUL, Mona H. SOLIMAN, Mohamed S. ATTIA, Salah M. ELSAYED, Mohamed M. ALI , Ahmed M. SADEK, Marwa A. FAKHR
    Notulae Botanicae Horti Agrobotanici Cluj-Napoca.2022; 50(1): 12614.     CrossRef
  • Metagenomic analysis of microbial communities and antibiotic resistance genes in spoiled household chemicals
    Gang Zhou, Hong-bing Tao, Xia Wen, Ying-si Wang, Hong Peng, Hui-zhong Liu, Xiu-jiang Yang, Xiao-mo Huang, Qing-shan Shi, Xiao-bao Xie
    Chemosphere.2022; 291: 132766.     CrossRef
  • Metagenomic insights into surface water microbial communities of a South Asian mangrove ecosystem
    Anwesha Ghosh, Ratul Saha, Punyasloke Bhadury
    PeerJ.2022; 10: e13169.     CrossRef
  • Diversity, metabolism and cultivation of archaea in mangrove ecosystems
    Cui-Jing Zhang, Yu-Lian Chen, Yi-Hua Sun, Jie Pan, Ming-Wei Cai, Meng Li
    Marine Life Science & Technology.2021; 3(2): 252.     CrossRef
  • Thermohalobaculum xanthum gen. nov., sp. nov., a moderately thermophilic bacterium isolated from mangrove sediment
    Xinli Pan, Zhe Li, Fei Li, Yuanlin Huang, Qiaozhen Wang, Shushi Huang, Wenjin Hu, Mingguo Jiang
    Antonie van Leeuwenhoek.2021; 114(11): 1819.     CrossRef
  • 16S rRNA gene amplicon-based metagenomic analysis of bacterial communities in the rhizospheres of selected mangrove species from Mida Creek and Gazi Bay, Kenya
    Edith M. Muwawa, Chinedu C. Obieze, Huxley M. Makonde, Joyce M. Jefwa, James H. P. Kahindi, Damase P. Khasa, Marco Fusi
    PLOS ONE.2021; 16(3): e0248485.     CrossRef
  • Microbial enrichment and meta-omics analysis identify CAZymes from mangrove sediments with unique properties
    Douglas Antonio Alvaredo Paixão, Geizecler Tomazetto, Victoria Ramos Sodré, Thiago A. Gonçalves, Cristiane Akemi Uchima, Fernanda Büchli, Thabata Maria Alvarez, Gabriela Felix Persinoti, Márcio José da Silva, Juliano Bragatto, Marcelo Vizoná Liberato, Joã
    Enzyme and Microbial Technology.2021; 148: 109820.     CrossRef
  • Metagenomic analysis of microbial communities continuously exposed to Bisphenol A in mangrove rhizosphere and non-rhizosphere soils
    Tianli Tong, Ruili Li, Minwei Chai, Qian Wang, Yuyin Yang, Shuguang Xie
    Science of The Total Environment.2021; 792: 148486.     CrossRef
  • Acuticoccus mangrovi sp. nov., with an antibacterial property, isolated from mangrove sediment
    Zhe Li, Wenjin Hu, Shushi Huang, Yuanlin Huang, Fei Li, Qiaozhen Wang, Zhanhua Tao, Xinli Pan
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Extraordinary diversity of viruses in deep‐sea sediments as revealed by metagenomics without prior virion separation
    Xiaowei Zheng, Wang Liu, Xin Dai, Yaxin Zhu, Jinfeng Wang, Yongqiang Zhu, Huajun Zheng, Ying Huang, Zhiyang Dong, Wenbin Du, Fangqing Zhao, Li Huang
    Environmental Microbiology.2021; 23(2): 728.     CrossRef
  • Genomic and Experimental Investigations of Auriscalpium and Strobilurus Fungi Reveal New Insights into Pinecone Decomposition
    Panmeng Wang, Jianping Xu, Gang Wu, Tiezhi Liu, Zhu L. Yang
    Journal of Fungi.2021; 7(8): 679.     CrossRef
Characteristics of the gut microbiota colonization, inflammatory profile, and plasma metabolome in intrauterine growth restricted piglets during the first 12 hours after birth
Shimeng Huang , Na Li , Cong Liu , Tiantian Li , Wei Wang , Lili Jiang , Zhen Li , Dandan Han , Shiyu Tao , Junjun Wang
J. Microbiol. 2019;57(9):748-758.   Published online June 11, 2019
DOI: https://doi.org/10.1007/s12275-019-8690-x
  • 416 View
  • 0 Download
  • 46 Web of Science
  • 44 Crossref
AbstractAbstract PDF
Intrauterine growth restriction (IUGR) predisposes newborns to inflammatory and metabolic disturbance. Disequilibrium of gut microbiota in early life has been implicated in the incidence of inflammation and metabolic diseases in adulthood. This study aimed to investigate the difference in gut microbiota colonization, cytokines and plasma metabolome between IUGR and normal birth weight (NBW) piglets in early life. At birth, reduced (P < 0.05) body, jejunum, and ileum weights, as well as decreased (P < 0.05) small intestinal villi and increased (P < 0.05) ileal crypt depth were observed in IUGR piglets compared with their NBW counterparts. Imbalanced inflammatory and plasma metabolome profile was observed in IUGR piglets. Furthermore, altered metabolites were mainly involved in fatty acid metabolism and inflammatory response. At 12 h after birth and after suckling colostrum, reduced (P < 0.05) postnatal growth and the small intestinal maturation retardation (P < 0.05) continued in IUGR piglets in comparison with those in NBW littermates. Besides, the gut microbiota structure was significantly altered by IUGR. Importantly, the disruption of the inflammatory profile and metabolic status mainly involved the pro-inflammatory cytokines (IL-1β and IFN-γ) and amino acid metabolism. Moreover, spearman correlation analysis showed that the increased abundance of Escherichia-Shigella and decreased abundance of Clostridium_sensu_stricto_1 in IUGR piglets was closely associated with the alterations of slaughter weight, intestinal morphology, inflammatory cytokines, and plasma metabolites. Collectively, IUGR significantly impairs small intestine structure, modifies gut microbiota colonization, and disturbs inflammatory and metabolic profiles during the first 12 h after birth. The unbalanced gut microbiota mediated by IUGR contributes to the development of inflammation and metabolic diseases.

Citations

Citations to this article as recorded by  
  • Connecting Molecular Characteristics of Intrauterine Growth-Retarded Piglets to Targeted Nutritional Interventions: A Review
    Janghan Choi, Emma Traylor, Rachel Husak, Annabelle Foster, Aubrey Akere-Nkongho Tambe
    Animals.2025; 15(15): 2231.     CrossRef
  • Endoplasmic Reticulum Stress Contributes to Intestinal Injury in Intrauterine Growth Restriction Newborn Piglets
    Tingting Fang, Gang Tian, Daiwen Chen, Jun He, Ping Zheng, Xiangbing Mao, Hui Yan, Bing Yu
    Animals.2024; 14(18): 2677.     CrossRef
  • Characterization of the chemical composition of different parts of Dolichos lablab L. and revelation of its anti-ulcerative colitis effects by modulating the gut microbiota and host metabolism
    Yanping Gao, Ruiting Huang, Yongyi Qiu, Yi Liu, Lei Chen
    Journal of Ethnopharmacology.2024; 322: 117629.     CrossRef
  • Plant-Derived Polysaccharides Benefit Weaned Piglets by Regulating Intestinal Microbiota: A Review
    Xiaoyan Huang, Faming Jiang, Xingying Chen, Yuanhua Xian
    Journal of Agricultural and Food Chemistry.2024; 72(51): 28225.     CrossRef
  • Maternal Supplementation with Ornithine Promotes Placental Angiogenesis and Improves Intestinal Development of Suckling Piglets
    Yun Yang, Guanyu Hou, Fengjie Ji, Hanlin Zhou, Renlong Lv, Chengjun Hu
    Animals.2024; 14(5): 689.     CrossRef
  • Dietary supplementation with dihydroartemisinin improves intestinal barrier function in weaned piglets with intrauterine growth retardation by modulating the gut microbiota
    Yu Niu, Ruiqiang Zhang, Caimei Yang, Jintian He, Tian Wang
    Journal of Animal Science.2024;[Epub]     CrossRef
  • Phosphatidylethanolamine Improves Postnatal Growth Retardation by Regulating Mucus Secretion of Intestinal Goblet Cells in Piglets
    Nan Wang, Chengming Wang, Ming Qi, Xingtong Lin, Andong Zha, Bie Tan, Yulong Yin, Jing Wang
    Animals.2024; 14(8): 1193.     CrossRef
  • Microbiota intestinal en recién nacidos prematuros con restricción del crecimiento intrauterino
    Lizbeth Miranda-García, Francisco Josué Fernández-Becerra, Paulina Briseño-Sahagun
    Revista Mexicana de Pediatría.2024; 91(2): 72.     CrossRef
  • Gut microbiota-derived ursodeoxycholic acid alleviates low birth weight-induced colonic inflammation by enhancing M2 macrophage polarization
    Yu Pi, Yujun Wu, Xiangyu Zhang, Dongdong Lu, Dandan Han, Jiangchao Zhao, Xiaojiao Zheng, Shiyi Zhang, Hao Ye, Shuai Lian, Yu Bai, Zhenyu Wang, Shiyu Tao, Dongjiao Ni, Xinhua Zou, Wei Jia, Guolong Zhang, Defa Li, Junjun Wang
    Microbiome.2023;[Epub]     CrossRef
  • Oil source regulates intestinal health of hybrid grouper (♀ Epinephelus fuscoguttatus × ♂ E. lanceolatu): Structure, inflammation and microorganisms homeostasis
    Xiaobo Yan, Hao Liu, Simiao Pan, Beiping Tan, Shuang Zhang, Hongyu Liu, Shuyan Chi, Qihui Yang, Yuanzhi Yang, Xiaohui Dong
    Aquaculture.2023; 565: 739121.     CrossRef
  • Dietary phytosterols supplementation improves the growth performance and decreases the abdominal fat of broiler chickens by regulating intestinal epithelial structure and microbiota
    Hongjian Dai, Jian Gao, Yi Zhang, Haoze Wu, Yuqi Li, Zhanying Sun, Donghai Lv, Weiyun Zhu, Yanfen Cheng
    Animal Feed Science and Technology.2023; 305: 115786.     CrossRef
  • Gut Microbiota, Inflammation, and Probiotic Supplementation in Fetal Growth Restriction—A Comprehensive Review of Human and Animal Studies
    Naser A. Alsharairi, Li Li
    Life.2023; 13(12): 2239.     CrossRef
  • Gut microbiota bridges dietary nutrients and host immunity
    Lijuan Fan, Yaoyao Xia, Youxia Wang, Dandan Han, Yanli Liu, Jiahuan Li, Jie Fu, Leli Wang, Zhending Gan, Bingnan Liu, Jian Fu, Congrui Zhu, Zhenhua Wu, Jinbiao Zhao, Hui Han, Hao Wu, Yiwen He, Yulong Tang, Qingzhuo Zhang, Yibin Wang, Fan Zhang, Xin Zong,
    Science China Life Sciences.2023; 66(11): 2466.     CrossRef
  • Supplemental Clostridium butyricum modulates lipid metabolism by reshaping the gut microbiota composition and bile acid profile in IUGR suckling piglets
    Xin Zhang, Yang Yun, Zheng Lai, Shuli Ji, Ge Yu, Zechen Xie, Hao Zhang, Xiang Zhong, Tian Wang, Lili Zhang
    Journal of Animal Science and Biotechnology.2023;[Epub]     CrossRef
  • Dietary bile acid supplementation in weaned piglets with intrauterine growth retardation improves colonic microbiota, metabolic activity, and epithelial function
    Yang Liu, Md. Abul Kalam Azad, Sujuan Ding, Qian Zhu, Francois Blachier, Zugong Yu, Haijun Gao, Xiangfeng Kong
    Journal of Animal Science and Biotechnology.2023;[Epub]     CrossRef
  • Dousing the flame: reviewing the mechanisms of inflammatory programming during stress-induced intrauterine growth restriction and the potential for ω-3 polyunsaturated fatty acid intervention
    Melanie R. White, Dustin T. Yates
    Frontiers in Physiology.2023;[Epub]     CrossRef
  • Metabolic Alternations During Gestation in Dezhou Donkeys and the Link to the Gut Microbiota
    Yan Li, Qingshan Ma, Guiqin Liu, Zhenwei Zhang, Yandong Zhan, Mingxia Zhu, Changfa Wang
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • High-fat and high-protein diets from different sources induce different intestinal malodorous gases and inflammation
    Tingting Zhang, Beizhen Xie, Hong Liu
    Food Research International.2022; 154: 110989.     CrossRef
  • The Exploration of Fetal Growth Restriction Based on Metabolomics: A Systematic Review
    Mengxin Yao, Zhuoqiao Yang, Xin Rong, Xuan Hu, Na Yao, Manting Zhu, Xinnan Wang, Xiaoyan Zhu, Jieyun Yin
    Metabolites.2022; 12(9): 860.     CrossRef
  • Short-Chain Fatty Acids Modulate Permeability, Motility and Gene Expression in the Porcine Fetal Jejunum Ex Vivo
    Barbara U. Metzler-Zebeli, Simone Koger, Suchitra Sharma, Arife Sener-Aydemir, Ursula Ruczizka, Heinrich Kreutzmann, Andrea Ladinig
    Nutrients.2022; 14(12): 2524.     CrossRef
  • Intrauterine Growth Retardation Affects Intestinal Health of Suckling Piglets via Altering Intestinal Antioxidant Capacity, Glucose Uptake, Tight Junction, and Immune Responses
    Xiaopeng Tang, Kangning Xiong, Juan Gambini
    Oxidative Medicine and Cellular Longevity.2022;[Epub]     CrossRef
  • Intrauterine growth retardation affects liver bile acid metabolism in growing pigs: effects associated with the changes of colonic bile acid derivatives
    Yang Liu, Md. Abul Kalam Azad, Wanghong Zhang, Liang Xiong, Francois Blachier, Zugong Yu, Xiangfeng Kong
    Journal of Animal Science and Biotechnology.2022;[Epub]     CrossRef
  • Unfavourable intrauterine environment contributes to abnormal gut microbiome and metabolome in twins
    Jing Yang, Lingling Hou, Jinfeng Wang, Liwen Xiao, Jinyang Zhang, Nanlin Yin, Su Yao, Kun Cheng, Wen Zhang, Zhonghua Shi, Jing Wang, Hai Jiang, Nana Huang, Yanxia You, Mingmei Lin, Ruiyan Shang, Yuan Wei, Yangyu Zhao, Fangqing Zhao
    Gut.2022; 71(12): 2451.     CrossRef
  • Uteroplacental Insufficiency Causes Microbiota Disruption and Lung Development Impairment in Growth-Restricted Newborn Rats
    Yu-Chen S. H. Yang, Hsiu-Chu Chou, Yun-Ru Liu, Chung-Ming Chen
    Nutrients.2022; 14(20): 4388.     CrossRef
  • Zinc Oxide Nanoparticle Improves the Intestinal Function of Intrauterine Growth Retardation Finishing Pigs via Regulating Intestinal Morphology, Inflammation, Antioxidant Status and Autophagy
    Binbin Zhou, Jiaqi Zhang, Huijuan Liu, Shun Chen, Tian Wang, Chao Wang
    Frontiers in Veterinary Science.2022;[Epub]     CrossRef
  • The validation of the existence of the entero-mammary pathway and the assessment of the differences of the pathway between first and third parity sows
    Laura L Greiner, Dalton C Humphrey, Shayla N Holland, C J Anderson, Stephan Schmitz-Esser
    Translational Animal Science.2022;[Epub]     CrossRef
  • Characteristics of the gut microbiota in pregnant women with fetal growth restriction
    Xinzhi Tu, Chun Duan, Bingying Lin, Kangfeng Li, Jie Gao, Huaying Yan, Kejian Wang, Zhao Zhao
    BMC Pregnancy and Childbirth.2022;[Epub]     CrossRef
  • Melatonin-induced changes in the bovine vaginal microbiota during maternal nutrient restriction
    Riley D Messman, Zully E Contreras-Correa, Henry A Paz, Caleb O Lemley
    Journal of Animal Science.2021;[Epub]     CrossRef
  • Drenching Bovine Colostrum, Quercetin or Fructo-Oligosaccharides Has No Effect on Health or Survival of Low Birth Weight Piglets
    Kevin Van Tichelen, Sara Prims, Miriam Ayuso, Céline Van Kerschaver, Mario Vandaele, Jeroen Degroote, Steven Van Cruchten, Joris Michiels, Chris Van Ginneken
    Animals.2021; 12(1): 55.     CrossRef
  • Dietary dihydroartemisinin supplementation alleviates intestinal inflammatory injury through TLR4/NOD/NF-κB signaling pathway in weaned piglets with intrauterine growth retardation
    Yu Niu, Yongwei Zhao, Jintian He, Yang Yun, Mingming Shen, Zhending Gan, Lili Zhang, Tian Wang
    Animal Nutrition.2021; 7(3): 667.     CrossRef
  • Effects of Bacillus subtilis on jejunal integrity, redox status, and microbial composition of intrauterine growth restriction suckling piglets
    Yang Yun, Shuli Ji, Ge Yu, Peilu Jia, Yu Niu, Hao Zhang, Xin Zhang, Tian Wang, Lili Zhang
    Journal of Animal Science.2021;[Epub]     CrossRef
  • Management and Feeding Strategies in Early Life to Increase Piglet Performance and Welfare around Weaning: A Review
    Laia Blavi, David Solà-Oriol, Pol Llonch, Sergi López-Vergé, Susana María Martín-Orúe, José Francisco Pérez
    Animals.2021; 11(2): 302.     CrossRef
  • Malnutrition, poor post-natal growth, intestinal dysbiosis and the developing lung
    Mark A. Underwood, Satyan Lakshminrusimha, Robin H. Steinhorn, Stephen Wedgwood
    Journal of Perinatology.2021; 41(8): 1797.     CrossRef
  • The Effect of Dietary Protein Imbalance during Pregnancy on the Growth, Metabolism and Circulatory Metabolome of Neonatal and Weaned Juvenile Porcine Offspring
    Quentin L. Sciascia, Cornelia Prehn, Jerzy Adamski, Gürbüz Daş, Iris S. Lang, Winfried Otten, Solvig Görs, Cornelia C. Metges
    Nutrients.2021; 13(9): 3286.     CrossRef
  • Differences in Intestinal Barrier Development between Intrauterine Growth Restricted and Normal Birth Weight Piglets
    Jarosław Olszewski, Romuald Zabielski, Tomasz Skrzypek, Piotr Matyba, Małgorzata Wierzbicka, Antoni Adamski, Elżbieta Grzesiuk, Maria Sady, Zdzisław Gajewski, Karolina Ferenc
    Animals.2021; 11(4): 990.     CrossRef
  • Changes in Faecal Microbiota Profiles Associated With Performance and Birthweight of Piglets
    Clare H. Gaukroger, Christopher J. Stewart, Sandra A. Edwards, John Walshaw, Ian P. Adams, Ilias Kyriazakis
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Immunological Role of the Maternal Uterine Microbiome in Pregnancy: Pregnancies Pathologies and Alterated Microbiota
    Jonah Bardos, Desiree Fiorentino, Ryan E. Longman, Michael Paidas
    Frontiers in Immunology.2020;[Epub]     CrossRef
  • Color of Colon Content of Normal and Intrauterine Growth-Restricted Weaned Piglets Is Associated with Specific Microbial Taxa and Physiological Parameters
    Maria Wiese, Yan Hui, Dennis S. Nielsen, Andrew R. Williams, Julie C. Lynegaard, Nicolai R. Weber, Charlotte Amdi
    Animals.2020; 10(6): 1073.     CrossRef
  • The Human Breast Milk Metabolome in Preeclampsia, Gestational Diabetes, and Intrauterine Growth Restriction: Implications for Child Growth and Development
    Flaminia Bardanzellu, Melania Puddu, Vassilios Fanos
    The Journal of Pediatrics.2020; 221: S20.     CrossRef
  • Are Larger Litters a Concern for Piglet Survival or An Effectively Manageable Trait?
    Sophia A. Ward, Roy N. Kirkwood, Kate J. Plush
    Animals.2020; 10(2): 309.     CrossRef
  • Membrane proteomic analysis reveals the intestinal development is deteriorated by intrauterine growth restriction in piglets
    Shimeng Huang, Cong Liu, Na Li, Zhenhua Wu, Tiantian Li, Dandan Han, Zhen Li, Jiangchao Zhao, Junjun Wang
    Functional & Integrative Genomics.2020; 20(2): 277.     CrossRef
  • How could metabolomics change pediatric health?
    Flaminia Bardanzellu, Vassilios Fanos
    Italian Journal of Pediatrics.2020;[Epub]     CrossRef
  • Perturbation of the lipid metabolism and intestinal inflammation in growing pigs with low birth weight is associated with the alterations of gut microbiota
    Shi-Meng Huang, Zhen-Hua Wu, Tian-Tian Li, Cong Liu, Dan-Dan Han, Shi-Yu Tao, Yu Pi, Na Li, Jun-Jun Wang
    Science of The Total Environment.2020; 719: 137382.     CrossRef
  • Intrauterine Growth Restriction: New Insight from the Metabolomic Approach
    Elena Priante, Giovanna Verlato, Giuseppe Giordano, Matteo Stocchero, Silvia Visentin, Veronica Mardegan, Eugenio Baraldi
    Metabolites.2019; 9(11): 267.     CrossRef
Genomic surveillance links livestock production with the emergence and spread of multi-drug resistant non-typhoidal Salmonella in Mexico
Enrique Jesús Delgado-Suárez , Rocío Ortíz-López , Wondwossen A. Gebreyes , Marc W. Allard , Francisco Barona-Gómez , María Salud Rubio-Lozano
J. Microbiol. 2019;57(4):271-280.   Published online February 5, 2019
DOI: https://doi.org/10.1007/s12275-019-8421-3
  • 400 View
  • 0 Download
  • 10 Web of Science
  • 9 Crossref
AbstractAbstract PDF
Multi-drug resistant (MDR) non-typhoidal Salmonella (NTS) is increasingly common worldwide. While food animals are thought to contribute to the growing antimicrobial resistance (AMR) problem, limited data is documenting this relationship, especially in low and middle-income countries (LMIC). Herein, we aimed to assess the role of non-clinical NTS of bovine origin as reservoirs of AMR genes of human clinical significance. We evaluated the phenotypic and genotypic AMR profiles in a set of 44 bovine-associated NTS. For comparative purposes, we also included genotypic AMR data of additional isolates from Mexico (n = 1,067) that are publicly available. The most frequent AMR phenotypes in our isolates involved tetracycline (40/44), trimethoprim-sulfamethoxazole (26/44), chloramphenicol (19/44), ampicillin (18/44), streptomycin (16/44), and carbenicillin (13/44), while nearly 70% of the strains were MDR. These phenotypes were correlated with a widespread distribution of AMR genes (i.e. tetA, aadA, dfrA12, dfrA17, sul1, sul2, bla-TEM-1, blaCARB-2) against multiple antibiotic classes, with some of them contributed by plasmids and/or class-1 integrons. We observed different AMR genotypes for betalactams and tetracycline resistance, providing evidence of convergent evolution and adaptive AMR. The probability of MDR genotype occurrence was higher in meat-associated isolates than in those from other sources (odds ratio 11.2, 95% confidence interval 4.5–27.9, P < 0.0001). The study shows that beef cattle are a significant source of MDR NTS in Mexico, highlighting the role of animal production on the emergence and spread of MDR Salmonella in LMIC.

Citations

Citations to this article as recorded by  
  • Quantifying antimicrobial resistance in food-producing animals in North America
    Mohamed Mediouni, Abdoulaye Baniré Diallo, Vladimir Makarenkov
    Frontiers in Microbiology.2025;[Epub]     CrossRef
  • El pollo de venta al pormenor en la Ciudad de México como reservorio de Salmonella enterica de importancia en salud pública
    Aliannys Lázara Puente Cruz, Pavel Eduardo Hernández Carreño, Cindy Fabiola Hernández-Pérez, Nayarit Emérita Ballesteros Nova, Luz del Carmen Sierra Gómez Pedroso, Luisa María Sánchez-Zamorano, Montserrat Hernández-Iturriaga, Elisa Cabrera-Díaz, Mar
    Veterinaria México OA.2025;[Epub]     CrossRef
  • Geography, Antimicrobial Resistance, and Genomics of Salmonella enterica (Serotypes Newport and Anatum) from Meat in Mexico (2021–2023)
    Eduardo Canek Reynoso, Enrique Jesús Delgado-Suárez, Cindy Fabiola Hernández-Pérez, Yaselda Chavarin-Pineda, Elizabeth Ernestina Godoy-Lozano, Geny Fierros-Zárate, Omar Alejandro Aguilar-Vera, Santiago Castillo-Ramírez, Luz del Carmen Sierra Gómez-Pedroso
    Microorganisms.2024; 12(12): 2485.     CrossRef
  • Genomic analysis of the MLST population structure and antimicrobial resistance genes associated with Salmonella enterica in Mexico
    Adrián Gómez-Baltazar, Angélica Godínez-Oviedo, Gerardo Vázquez-Marrufo, Ma. Soledad Vázquez-Garcidueñas, Montserrat Hernández-Iturriaga
    Genome.2023; 66(12): 319.     CrossRef
  • Fuertes perfiles de resistencia a antibióticos en Salmonella spp. aislada de carne de res molida en el centro de México
    Carlos Mario Campos Granados, Luz del Carmen Sierra Gómez Pedroso, Cindy F. Hernández-Pérez, Nayarit Emérita Ballesteros-Nova, María Salud Rubio-Lozano, Luisa María Sánchez-Zamorano, Enrique Jesús Delgado-Suárez
    Veterinaria México OA.2023;[Epub]     CrossRef
  • Comparative Genomic Analysis Discloses Differential Distribution of Antibiotic Resistance Determinants between Worldwide Strains of the Emergent ST213 Genotype of Salmonella Typhimurium
    Elda Araceli Hernández-Díaz, Ma. Soledad Vázquez-Garcidueñas, Andrea Monserrat Negrete-Paz, Gerardo Vázquez-Marrufo
    Antibiotics.2022; 11(7): 925.     CrossRef
  • Genomic surveillance of antimicrobial resistance shows cattle and poultry are a moderate source of multi-drug resistant non-typhoidal Salmonella in Mexico
    Enrique Jesús Delgado-Suárez, Tania Palós-Guitérrez, Francisco Alejandro Ruíz-López, Cindy Fabiola Hernández Pérez, Nayarit Emérita Ballesteros-Nova, Orbelín Soberanis-Ramos, Rubén Danilo Méndez-Medina, Marc W. Allard, María Salud Rubio-Lozano, Iddya Karu
    PLOS ONE.2021; 16(5): e0243681.     CrossRef
  • Class 1 integron-borne cassettes harboring blaCARB-2 gene in multidrug-resistant and virulent Salmonella Typhimurium ST19 strains recovered from clinical human stool samples, United States
    Daniel F. M. Monte, Fábio P. Sellera, Ralf Lopes, Shivaramu Keelara, Mariza Landgraf, Shermalyn Greene, Paula J. Fedorka-Cray, Siddhartha Thakur, Iddya Karunasagar
    PLOS ONE.2020; 15(10): e0240978.     CrossRef
  • Prevalence and antimicrobial resistance of Listeria monocytogenes, Salmonella enterica and Escherichia coli O157:H7 in imported beef cattle in Jordan
    Mohammad M. Obaidat
    Comparative Immunology, Microbiology and Infectious Diseases.2020; 70: 101447.     CrossRef
Comparative genomic analysis of pyrene-degrading Mycobacterium species: Genomic islands and ring-hydroxylating dioxygenases involved in pyrene degradation
Dae-Wi Kim , Kihyun Lee , Do-Hoon Lee , Chang-Jun Cha
J. Microbiol. 2018;56(11):798-804.   Published online October 24, 2018
DOI: https://doi.org/10.1007/s12275-018-8372-0
  • 370 View
  • 0 Download
  • 22 Crossref
AbstractAbstract PDF
The genome sequences of two pyrene-degrading bacterial strains of Mycobacterium spp. PYR10 and PYR15, isolated from the estuarine wetland of the Han river, South Korea, were determined using the PacBio RS II sequencing platform. The complete genome of strain PYR15 was 6,037,017 bp in length with a GC content of 66.5%, and contained 5,933 protein- coding genes. The genome of strain PYR10 was 5,999,427 bp in length with a GC content of 67.7%, and contained 5,767 protein-coding genes. Based on the average nucleotide identity values, these strains were designated as M. gilvum PYR10 and M. pallens PYR15. A genomic comparison of these pyrene-degrading Mycobacterium strains with pyrene- non-degrading strains revealed that the genomes of pyrene-degrading strains possessed similar repertoires of ringhydroxylating dioxygenases (RHDs), including the pyrenehydroxylating dioxygenases encoded by nidA and nidA3, which could be readily distinguished from those of pyrenenon- degraders. Furthermore, genomic islands, containing catabolic gene clusters, were shared only among the pyrenedegrading Mycobacterium strains and these gene clusters contained RHD genes, including nidAB and nidA3B3. Our genome data should facilitate further studies on the evolution of the polycyclic aromatic hydrocarbon-degradation pathways in the genus Mycobacterium.

Citations

Citations to this article as recorded by  
  • Unraveling the genomic and metabolic mechanisms of pyrene and phenanthrene degradation by Mycolicibacterium sp. SCSIO 43805: A high-Efficiency bacterium isolated from seagrass sediment
    Manzoor Ahmad, Tongyin Liang, Yuhang Zhang, Youshao Wang, Jidong Gu, Hao Cheng, Khaled Masmoudi, Weiguo Zhou, Qingsong Yang, Xiaofang Huang, Junde Dong, Juan Ling
    International Biodeterioration & Biodegradation.2025; 202: 106101.     CrossRef
  • Complementing culture-dependent and -independent approaches is essential when assessing bacterial community potential functions in chronically PAH-contaminated soil
    Sabrina FESTA, Esteban NIETO, Penélope RAPOSEIRAS ALDORINO, Sara CUADROS-ORELLANA, José Matías IRAZOQUI, Claudio QUEVEDO, Bibiana Marina COPPOTELLI, Irma Susana MORELLI
    Pedosphere.2024;[Epub]     CrossRef
  • Shifts in structure and dynamics of the soil microbiome in biofuel/fuel blend–affected areas triggered by different bioremediation treatments
    Kelly Hidalgo-Martinez, Admir José Giachini, Marcio Schneider, Adriana Soriano, Marcus Paulus Baessa, Luiz Fernando Martins, Valéria Maia de Oliveira
    Environmental Science and Pollution Research.2024; 31(23): 33663.     CrossRef
  • Physiology and comparative genomics of the haloalkalitolerant and hydrocarbonoclastic marine strain Rhodococcus ruber MSA14
    Salvador Embarcadero-Jiménez, Cynthia Lizzeth Araujo-Palomares, Tonatiuh Moreno-Perlín, Nancy Ramírez-Álvarez, Cristina Quezada-Hernández, Ramón Alberto Batista-García, Alejandro Sanchez-Flores, Gabriela Calcáneo-Hernández, Hortencia Silva-Jiménez
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Multi-Approach Characterization of Novel Pyrene-Degrading Mycolicibacterium austroafricanum Isolates Lacking nid Genes
    Natalia Maria Silva, Camila Lopes Romagnoli, Caio Rafael do Nascimento Santiago, João Paulo Amorim de de Lacerda, Sylvia Cardoso Leão, Luciano Antonio Digiampietri, Cristina Viana-Niero
    Microorganisms.2023; 11(6): 1413.     CrossRef
  • Effects of biodegradable and non-biodegradable microplastics on bacterial community and PAHs natural attenuation in agricultural soils
    Yuting Li, Peng Gu, Wen Zhang, Hongwen Sun, Jianing Wang, Leilei Wang, Bing Li, Lei Wang
    Journal of Hazardous Materials.2023; 449: 131001.     CrossRef
  • Recent trends in polycyclic aromatic hydrocarbons pollution distribution and counteracting bio-remediation strategies
    Selvaraj Barathi, Gitanjali J, Gandhimathi Rathinasamy, Nadana Sabapathi, K.N. Aruljothi, Jintae Lee, Sabariswaran Kandasamy
    Chemosphere.2023; 337: 139396.     CrossRef
  • Evaluation of the Different Nutritional and Environmental Parameters on Microbial Pyrene Degradation by Mangrove Culturable Bacteria
    Manzoor Ahmad, Juan Ling, Jianping Yin, Luxiang Chen, Qingsong Yang, Weiguo Zhou, Yuhang Zhang, Xiaofang Huang, Imran Khan, Junde Dong
    International Journal of Molecular Sciences.2023; 24(9): 8282.     CrossRef
  • Biological machinery for polycyclic aromatic hydrocarbons degradation: A review
    Arfin Imam, Sunil Kumar Suman, Pankaj K. Kanaujia, Anjan Ray
    Bioresource Technology.2022; 343: 126121.     CrossRef
  • Phytoremediation of a pyrene-contaminated soil by Cannabis sativa L. at different initial pyrene concentrations
    Ilaria Gabriele, Marco Race, Stefano Papirio, Patrizia Papetti, Giovanni Esposito
    Chemosphere.2022; 300: 134578.     CrossRef
  • A Review of Pyrene Bioremediation Using Mycobacterium Strains in a Different Matrix
    Mohammad Qutob, Mohd Rafatullah, Syahidah Akmal Muhammad, Abeer M. Alosaimi, Hajer S. Alorfi, Mahmoud A. Hussein
    Fermentation.2022; 8(6): 260.     CrossRef
  • Mycolicibacterium sp. strain PAM1, an alfalfa rhizosphere dweller, catabolizes PAHs and promotes partner-plant growth
    Sergey N. Golubev, Anna Yu. Muratova, Leonid V. Panchenko, Sergey Yu. Shchyogolev, Olga V. Turkovskaya
    Microbiological Research.2021; 253: 126885.     CrossRef
  • Biotreatment of Cr(VI) and pyrene combined water pollution by loofa-immobilized bacteria
    Xinjiao Dong, Yaru Li, Rui Zhu, Chuanhua Wang, Shimei Ge
    Environmental Science and Pollution Research.2021; 28(33): 45619.     CrossRef
  • Mycobacteriosis in cultured koi carp Cyprinus carpio caused by Mycobacterium paragordonae and two Mycolicibacterium spp.
    Yuichiro Machida, Belinda Chien Chien Tang, Mitsuo Yamada, Shoh Sato, Kazue Nakajima, Hisato Matoyama, Tatsuya Kishihara, Makoto Endo, Motohiko Sano, Goshi Kato
    Aquaculture.2021; 539: 736656.     CrossRef
  • Bioballs carrying a syntrophic Rhodococcus and Mycolicibacterium consortium for simultaneous sorption and biodegradation of fuel oil in contaminated freshwater
    Kallayanee Naloka, Duangporn Polrit, Chanokporn Muangchinda, Honglada Thoetkiattikul, Onruthai Pinyakong
    Chemosphere.2021; 282: 130973.     CrossRef
  • Biodegradation of pyrene by a novel strain of Castellaniella sp. under denitrifying condition
    Liujie Deng, Yuan Ren, Chaohai Wei, Jianlong Wang
    Journal of Environmental Chemical Engineering.2021; 9(1): 104970.     CrossRef
  • Comparative Genomic Analysis of Stenotrophomonas maltophilia Strain W18 Reveals Its Adaptative Genomic Features for Degrading Polycyclic Aromatic Hydrocarbons
    Yaqian Xiao, Ruhan Jiang, Xiaoxiong Wu, Qi Zhong, Yi Li, Hongqi Wang, Jeffrey A. Gralnick
    Microbiology Spectrum.2021;[Epub]     CrossRef
  • Impacts of bio-stimulants on pyrene degradation, prokaryotic community compositions, and functions
    Manzoor Ahmad, Pandeng Wang, Jia-Ling Li, Renfei Wang, Li Duan, Xiaoqing Luo, Muhammad Irfan, Ziqi Peng, Lingzi Yin, Wen-Jun Li
    Environmental Pollution.2021; 289: 117863.     CrossRef
  • Polycyclic Aromatic Hydrocarbons Degradation by Aquatic Bacteria Isolated from Khazar Sea, the World’s Largest Lake
    Vida Ebrahimi, Shirin Eyvazi, Soheila Montazersaheb, Parivar Yazdani, Mohammad Amin Hejazi, Vahideh Tarhriz, Mohammad Saeid Hejazi
    Pharmaceutical Sciences.2020; 27(1): 121.     CrossRef
  • Comparative Genomics Suggests Mechanisms of Genetic Adaptation toward the Catabolism of the Phenylurea Herbicide Linuron in Variovorax
    Başak Öztürk, Johannes Werner, Jan P Meier-Kolthoff, Boyke Bunk, Cathrin Spröer, Dirk Springael, Laura A Katz
    Genome Biology and Evolution.2020; 12(6): 827.     CrossRef
  • Rhodoferax lacus sp. nov., isolated from a large freshwater lake
    Miri Park, Jaeho Song, Gi Gyun Nam, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(10): 3135.     CrossRef
  • The distinct response of phenanthrene enriched bacterial consortia to different PAHs and their degradation potential: a mangrove sediment microcosm study
    Manzoor Ahmad, Qingsong Yang, Yanying Zhang, Juan Ling, Wasim Sajjad, Shuhua Qi, Weiguo Zhou, Ying Zhang, Xiancheng Lin, Yuhang Zhang, Junde Dong
    Journal of Hazardous Materials.2019; 380: 120863.     CrossRef
Metagenomic analysis reveals the prevalence and persistence of antibiotic- and heavy metal-resistance genes in wastewater treatment plant
Sachin Kumar Gupta , Hanseob Shin , Dukki Han , Hor-Gil Hur , Tatsuya Unno
J. Microbiol. 2018;56(6):408-415.   Published online June 1, 2018
DOI: https://doi.org/10.1007/s12275-018-8195-z
  • 382 View
  • 0 Download
  • 72 Crossref
AbstractAbstract PDF
The increased antibiotic resistance among microorganisms has resulted into growing interest for investigating the wastewater treatment plants (WWTPs) as they are reported to be the major source in the dissemination of antibiotic resistance genes (ARGs) and heavy metal resistance genes (HMRGs) in the environment. In this study, we investigated the prevalence and persistence of ARGs and HMRGs as well as bacterial diversity and mobile genetic elements (MGEs) in influent and effluent at the WWTP in Gwangju, South Korea, using high-throughput sequencing based metagenomic approach. A good number of broad-spectrum of resistance genes (both ARG and HMRG) were prevalent and likely persistent, although large portion of them were successfully removed at the wastewater treatment process. The relative abundance of ARGs and MGEs was higher in effluent as compared to that of influent. Our results suggest that the resistance genes with high abundance and bacteria harbouring ARGs and MGEs are likely to persist more through the treatment process. On analyzing the microbial community, the phylum Proteobacteria, especially potentially pathogenic species belonging to the genus Acinetobacter, dominated in WWTP. Overall, our study demonstrates that many ARGs and HMRGs may persist the treatment processes in WWTPs and their association to MGEs may contribute to the dissemination of resistance genes among microorganisms in the environment.

Citations

Citations to this article as recorded by  
  • Molecular-level degradation of antibiotic resistance genes in electrochemical oxidation: Targeting promoter regions
    Longmei Qiu, Jing Zhang, Chengzhen Liang, Hongna Li
    Journal of Hazardous Materials.2026; 502: 140639.     CrossRef
  • Bacterial Communities and Resistance and Virulence Genes in Hospital and Community Wastewater: Metagenomic Analysis
    Maria Elena Velazquez-Meza, Miguel Galarde-López, Patricia Cornejo-Juárez, Miriam Bobadilla-del-Valle, Ernestina Godoy-Lozano, Edgar Aguilar-Vera, Berta Alicia Carrillo-Quiroz, Alfredo Ponce de León-Garduño, Consuelo Velazquez Acosta, Celia Mercedes Alpuc
    International Journal of Molecular Sciences.2025; 26(5): 2051.     CrossRef
  • Alterations in microbial communities and antibiotic resistance genes pre- and post-sludge bulking in a wastewater treatment plant
    Longfei Zhang, Siyu Wang, Yangyang Jia, Ziteng Liu, Junqin Yao, Yinguang Chen
    Environmental Pollution.2025; 376: 126391.     CrossRef
  • Emerging technologies for detecting antibiotics in aquaculture wastewater: A critical review
    Xinyu Chang, Junchi Cui, Guihua Wang, Shujuan Meng, Lingling Chen, Meng Zhang
    Environmental Science and Ecotechnology.2025; 25: 100572.     CrossRef
  • Whole-genome sequencing characterization of silver-resistant bacteria from the outfall of wastewater treatment plants and effluent-receiving rivers
    Yubing Xia, Haichen Wang, Jun Li, Haolan Wang, Yuyao Wang, Yongmei Hu, Fengjun Xia, Mingxiang Zou, John R. Spear
    Applied and Environmental Microbiology.2025;[Epub]     CrossRef
  • Antimicrobial resistance transmission in the environmental settings through traditional and UV-enabled advanced wastewater treatment plants: a metagenomic insight
    Absar Talat, Yasir Bashir, Nadeem Khalil, Connor L. Brown, Dinesh Gupta, Asad Ullah Khan
    Environmental Microbiome.2025;[Epub]     CrossRef
  • Pilot-Scale Quaternary Treatment of Municipal Wastewater for Agricultural Reuse: Removal of Pharmaceuticals and Compliance with EU Regulation 2020/741
    Filip Takács, Jakub Jurík, Petra Nováková, Andrea Vojs Staňová, Barbora Jankovičová, Igor Bodík
    ACS Agricultural Science & Technology.2025; 5(12): 2575.     CrossRef
  • A review focusing on mechanisms and ecological risks of enrichment and propagation of antibiotic resistance genes and mobile genetic elements by microplastic biofilms
    Ranran Zhou, Xirong Huang, Zhongtang Xie, Zhuhong Ding, Hengchen Wei, Qijie Jin
    Environmental Research.2024; 251: 118737.     CrossRef
  • Evaluation of the Rhizosphere Resistome of Cultivated Soils Polluted with Antibiotics from Reclaimed Wastewater
    Begoña Mayans, Sergio Zamora-Martin, Rafael Antón-Herrero, Carlos García-Delgado, Laura Delgado-Moreno, María Guirado, Javier Pérez-Esteban, Mª Luz Segura, Consuelo Escolástico, Enrique Eymar
    Agronomy.2024; 14(6): 1118.     CrossRef
  • Presence and Persistence of ESKAPEE Bacteria before and after Hospital Wastewater Treatment
    Miguel Galarde-López, Maria Elena Velazquez-Meza, Elizabeth Ernestina Godoy-Lozano, Berta Alicia Carrillo-Quiroz, Patricia Cornejo-Juárez, Alejandro Sassoé-González, Alfredo Ponce-de-León, Pedro Saturno-Hernández, Celia Mercedes Alpuche-Aranda
    Microorganisms.2024; 12(6): 1231.     CrossRef
  • Strategic implementation of upflow microbubble airlift photocatalytic process to control heavy metal resistant-MDR bacteria and the associated genes in wastewater
    Fahmida Ishaque, Ranjith Kumar Manoharan, Young-Ho Ahn
    Chemical Engineering Journal.2024; 489: 151240.     CrossRef
  • Metagenome sequencing to unveil the occurrence and distribution of antibiotic resistome and in a wastewater treatment plant
    Zhonghong Li, Donghai Yuan, Yingying Kou, Xiaoguang Li, Caili Du
    Environmental Technology.2024; 45(10): 1933.     CrossRef
  • Comparison of qPCR and metagenomic sequencing methods for quantifying antibiotic resistance genes in wastewater
    Gihan Daw Elbait, Mariane Daou, Miral Abuoudah, Ahmed Elmekawy, Shadi W. Hasan, Dean B. Everett, Habiba Alsafar, Andreas Henschel, Ahmed F. Yousef, Clinton Moodley
    PLOS ONE.2024; 19(4): e0298325.     CrossRef
  • Reviewing the Phenomenon of Antimicrobial Resistance in Hospital and Municipal Wastewaters: The Crisis, the Challenges and Mitigation Methods
    Nazim Hasan, Embar Prasanna Kannan, Othman Hakami, Abdullah Ali Alamri, Judy Gopal, Manikandan Muthu
    Applied Sciences.2024; 14(18): 8358.     CrossRef
  • Use of reclaimed municipal wastewater in agriculture: Comparison of present practice versus an emerging paradigm of anaerobic membrane bioreactor treatment coupled with hydroponic controlled environment agriculture
    Abayomi Babatunde Alayande, Weiming Qi, Raghupathy Karthikeyan, Sudeep C. Popat, David A. Ladner, Gary Amy
    Water Research.2024; 265: 122197.     CrossRef
  • Antibiotic and Non-Antibiotic Determinants of Antimicrobial Resistance: Insights from Water Ecosystems
    Poonam Sharma, Namrata Pal, Manoj Kumawat, Shivam Mishra, Vinod Verma, Rajnarayan R Tiwari, Ravinder Nagpal, Devojit Kumar Sarma, Samradhi Singh, Manoj Kumar
    ACS ES&T Water.2024; 4(11): 4671.     CrossRef
  • Analytical techniques for assessing antimicrobial resistance: Conventional solutions, contemporary problems and futuristic outlooks
    Embar Prasanna Kannan, Judy Gopal, Manikandan Muthu
    TrAC Trends in Analytical Chemistry.2024; 178: 117843.     CrossRef
  • Prevalence of antibiotics, antibiotic resistance genes, and their associations in municipal wastewater treatment plants along the Yangtze River basin, China
    Yangyang Zhang, Yifan Hu, Xiuwen Li, Linjun Gao, Shuya Wang, Shuyu Jia, Peng Shi, Aimin Li
    Environmental Pollution.2024; 348: 123800.     CrossRef
  • Antimicrobial resistome and mobilome in the urban river affected by combined sewer overflows and wastewater treatment effluent
    Muhammad Adnan Sabar, Than Van Huy, Yoshinori Sugie, Hiroyuki Wada, Bo Zhao, Norihisa Matsuura, Masaru Ihara, Toru Watanabe, Hiroaki Tanaka, Ryo Honda
    Journal of Water and Health.2023; 21(8): 1032.     CrossRef
  • New insight into the microbiome, resistome, and mobilome on the dental waste water in the context of heavy metal environment
    Xiaoyang Jiao, Wenyan Guo, Xin Li, Fen Yao, Mi Zeng, Yumeng Yuan, Xiaoling Guo, Meimei Wang, Qing Dong Xie, Leshan Cai, Feiyuan Yu, Pen Yu, Yong Xia
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Removal of intI1, ARGs, and SARS-CoV-2 and changes in bacterial communities in four sewage treatment facilities
    Yovany Cuetero-Martínez, Karen Natalia Villamizar-Ojeda, Margarita Jazmín Hernández-Santiago, Daniel De los Cobos-Vasconcelos, José Félix Aguirre-Garrido, Yolanda López-Vidal, Adalberto Noyola
    Science of The Total Environment.2023; 903: 165984.     CrossRef
  • Next-generation Sequencing for Surveillance of Antimicrobial Resistance and Pathogenicity in Municipal Wastewater Treatment Plants
    Yovany Cuetero-Martínez, Daniel de los Cobos-Vasconcelos, José Felix Aguirre-Garrido, Yolanda Lopez-Vidal, Adalberto Noyola
    Current Medicinal Chemistry.2023; 30(1): 5.     CrossRef
  • Sustainable municipal wastewater treatment using an innovative integrated compact unit: microbial communities, parasite removal, and techno-economic analysis
    Mohamed El-Khateeb, Gamal K. Hassan, Mohamed Azab El-Liethy, Kamel M. El-Khatib, Hussein I. Abdel-Shafy, Anyi Hu, Mahmoud Gad
    Annals of Microbiology.2023;[Epub]     CrossRef
  • Microbial communities, resistance genes, and resistome risks in urban lakes of different trophic states: Internal links and external influences
    Chengzhi Mao, Xiao Wang, Xinghao Li, Qiaoyi Kong, Elvis Genbo Xu, Jie Huang
    Journal of Hazardous Materials Advances.2023; 9: 100233.     CrossRef
  • High diversity of the emerging pathogen Acinetobacter baumannii and other Acinetobacter spp. in raw manure, biogas plants digestates, and rural and urban wastewater treatment plants with system specific antimicrobial resistance profiles
    Dipen Pulami, Peter Kämpfer, Stefanie P. Glaeser
    Science of The Total Environment.2023; 859: 160182.     CrossRef
  • Water Quality, Heavy Metals, and Antifungal Susceptibility to Fluconazole of Yeasts from Water Systems
    Luz Dary Caicedo-Bejarano, Lizeth Stefania Osorio-Vanegas, Mauricio Ramírez-Castrillón, Jorge Enrique Castillo, Carlos Andrés Martínez-Garay, Mónica Chávez-Vivas
    International Journal of Environmental Research and Public Health.2023; 20(4): 3428.     CrossRef
  • Metagenomic analysis of microbial community structure and distribution of resistance genes in Daihai Lake, China
    Caili Du, Fang Yang, Xiaoguang Li, Haiqing Liao, Zhonghong Li, Jiayue Gao, Lieyu Zhang
    Environmental Pollution.2022; 302: 119065.     CrossRef
  • Spent waste from edible mushrooms offers innovative strategies for the remediation of persistent organic micropollutants: A review
    Anamika Ghose, Sudip Mitra
    Environmental Pollution.2022; 305: 119285.     CrossRef
  • Molecular Diagnostic Tools Applied for Assessing Microbial Water Quality
    Lisa Paruch
    International Journal of Environmental Research and Public Health.2022; 19(9): 5128.     CrossRef
  • Metal-Tolerant Bacteria of Wastewater Treatment Plant in a Large City
    Leonid Perelomov, Olga Sizova, Mohammad Mahmudur Rahman, Irina Perelomova, Tatiana Minkina, Sergei Sokolov, Yury Atroshchenko
    Sustainability.2022; 14(18): 11335.     CrossRef
  • Metagenomics analysis of probable transmission of determinants of antibiotic resistance from wastewater to the environment – A case study
    Wiktor Zieliński, Jakub Hubeny, Martyna Buta-Hubeny, Damian Rolbiecki, Monika Harnisz, Łukasz Paukszto, Ewa Korzeniewska
    Science of The Total Environment.2022; 827: 154354.     CrossRef
  • Contribution of plasmidome, metal resistome and integrases to the persistence of the antibiotic resistome in aquatic environments
    Andrea Di Cesare, Raffaella Sabatino, Ying Yang, Diego Brambilla, Pu Li, Diego Fontaneto, Ester M. Eckert, Gianluca Corno
    Environmental Pollution.2022; 297: 118774.     CrossRef
  • Characterization of antibiotic resistance genes in drinking water sources of the Douhe Reservoir, Tangshan, northern China: the correlation with bacterial communities and environmental factors
    Kunfeng Zhang, Yueting Fan, Sheng Chang, Qing Fu, Qi Zhang, Guang Yang, Xingbin Sun
    Environmental Sciences Europe.2022;[Epub]     CrossRef
  • Wastewater treatment plants as reservoirs and sources for antibiotic resistance genes: A review on occurrence, transmission and removal
    Yu-Xi Gao, Xing Li, Xiao-Yan Fan, Jun-Ru Zhao, Zhong-Xing Zhang
    Journal of Water Process Engineering.2022; 46: 102539.     CrossRef
  • Antibiotic and metal resistance of Stenotrophomonas maltophilia isolates from Eboling permafrost of the Tibetan Plateau
    Shuhong Zhang, Guangli Yang, Yali Jiang
    Environmental Science and Pollution Research.2022; 30(5): 11798.     CrossRef
  • Metagenomic analysis of microbial communities and antibiotic resistance genes in spoiled household chemicals
    Gang Zhou, Hong-bing Tao, Xia Wen, Ying-si Wang, Hong Peng, Hui-zhong Liu, Xiu-jiang Yang, Xiao-mo Huang, Qing-shan Shi, Xiao-bao Xie
    Chemosphere.2022; 291: 132766.     CrossRef
  • Municipal Wastewaters Carry Important Carbapenemase Genes Independent of Hospital Input and Can Mirror Clinical Resistance Patterns
    Adela Teban-Man, Edina Szekeres, Peiju Fang, Uli Klümper, Adriana Hegedus, Andreea Baricz, Thomas Ulrich Berendonk, Marcel Pârvu, Cristian Coman, Monica Adriana Garcia-Solache
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Profiling of emerging pathogens, antibiotic resistance genes and mobile genetic elements in different biological wastewater treatment plants
    Thobela Conco, Sheena Kumari, Oluyemi Olatunji Awolusi, Mushal Allam, Arshad Ismail, Thor A. Stenström, Faizal Bux
    Journal of Environmental Chemical Engineering.2022; 10(3): 107596.     CrossRef
  • Metagenomic and metatranscriptomic analyses reveal that biobed systems can enrich for antibiotic resistance and genetic mobility genes
    J. N. Russell, C. K. Yost
    Letters in Applied Microbiology.2022; 75(1): 145.     CrossRef
  • Fate of antibiotic resistant genes in wastewater environments and treatment strategies - A review
    Ranjith Kumar Manoharan, Fahmida Ishaque, Young-Ho Ahn
    Chemosphere.2022; 298: 134671.     CrossRef
  • Metagenomic Analysis of the Long-Term Synergistic Effects of Antibiotics on the Anaerobic Digestion of Cattle Manure
    Izabela Wolak, Małgorzata Czatzkowska, Monika Harnisz, Jan Paweł Jastrzębski, Łukasz Paukszto, Paulina Rusanowska, Ewa Felis, Ewa Korzeniewska
    Energies.2022; 15(5): 1920.     CrossRef
  • Metagenomic analysis reveals the response of microbial community in river sediment to accidental antimony contamination
    Xiuli Chen, Ji Wang, Chaoyi Pan, Lishi Feng, Qingwei Guo, Sili Chen, Shuguang Xie
    Science of The Total Environment.2022; 813: 152484.     CrossRef
  • Animal corpse degradation enriches antibiotic resistance genes but remains recalcitrant in drinking water microcosm
    Wanghong Su, Tongtong Li, Qiaoling Yu, Tianshu Feng, Jiawei Yang, Jiapeng Qu, Xiangzhen Li, Huan Li
    International Biodeterioration & Biodegradation.2022; 168: 105372.     CrossRef
  • Metagenomic insights into the spatiotemporal responses of antibiotic resistance genes and microbial communities in aquaculture sediments
    Ming Xu, Xing-hao Huang, Xiao-xiao Shen, Hao-qiang Chen, Chao Li, Guang-qiu Jin, Jia-shun Cao, Zhao-xia Xue
    Chemosphere.2022; 307: 135596.     CrossRef
  • Higher abundance of core antimicrobial resistant genes in effluent from wastewater treatment plants
    Shahbaz Raza, Hanseob Shin, Hor-Gil Hur, Tatsuya Unno
    Water Research.2022; 208: 117882.     CrossRef
  • Profiling of emerging contaminants and antibiotic resistance in sewage treatment plants: An Indian perspective
    Priyam Saxena, Isha Hiwrale, Sanchita Das, Varun Shukla, Lakshay Tyagi, Sukdeb Pal, Nishant Dafale, Rita Dhodapkar
    Journal of Hazardous Materials.2021; 408: 124877.     CrossRef
  • Investigation of the Prevalence of Antibiotic Resistance Genes According to the Wastewater Treatment Scale Using Metagenomic Analysis
    Keunje Yoo, Gihan Lee
    Antibiotics.2021; 10(2): 188.     CrossRef
  • A Review of Bacterial Antibiotic Resistance Genes and Their Removal Strategies from Wastewater
    Zainura Zainon Noor, Zainab Rabiu, Mohd. Helmi Mohd. Sani, Abdul Fatah A. Samad, Mohd. Farizal Ahmad Kamaroddin, María Florencia Perez, Julian Rafael Dib, Huma Fatima, Rajeshwari Sinha, Sunil Kumar Khare, Zainul Akmar Zakaria
    Current Pollution Reports.2021; 7(4): 494.     CrossRef
  • Analysis of heavy metal-related indices in the Eboling permafrost on the Tibetan Plateau
    Shuhong Zhang, Guangli Yang, Shugui Hou, Tingjun Zhang, Zhiguo Li, Wentao Du
    CATENA.2021; 196: 104907.     CrossRef
  • Next generation sequencing approaches to evaluate water and wastewater quality
    Emily Garner, Benjamin C. Davis, Erin Milligan, Matthew Forrest Blair, Ishi Keenum, Ayella Maile-Moskowitz, Jin Pan, Mariah Gnegy, Krista Liguori, Suraj Gupta, Aaron J. Prussin, Linsey C. Marr, Lenwood S. Heath, Peter J. Vikesland, Liqing Zhang, Amy Prude
    Water Research.2021; 194: 116907.     CrossRef
  • Recovering Escherichia coli Plasmids in the Absence of Long-Read Sequencing Data
    Julian A. Paganini, Nienke L. Plantinga, Sergio Arredondo-Alonso, Rob J. L. Willems, Anita C. Schürch
    Microorganisms.2021; 9(8): 1613.     CrossRef
  • Effects on microbiomes and resistomes and the source-specific ecological risks of heavy metals in the sediments of an urban river
    Yuezhao Li, Haiyang Chen, Liuting Song, Jin Wu, Wenchao Sun, Yanguo Teng
    Journal of Hazardous Materials.2021; 409: 124472.     CrossRef
  • Shotgun metagenomic analysis reveals the prevalence of antibiotic resistance genes and mobile genetic elements in full scale hospital wastewater treatment plants
    Ranjith Kumar Manoharan, Sathiyaraj Srinivasan, Gnanendra Shanmugam, Young-Ho Ahn
    Journal of Environmental Management.2021; 296: 113270.     CrossRef
  • Wastewater Treatment and Reuse: a Review of its Applications and Health Implications
    Kavindra Kumar Kesari, Ramendra Soni, Qazi Mohammad Sajid Jamal, Pooja Tripathi, Jonathan A. Lal, Niraj Kumar Jha, Mohammed Haris Siddiqui, Pradeep Kumar, Vijay Tripathi, Janne Ruokolainen
    Water, Air, & Soil Pollution.2021;[Epub]     CrossRef
  • Metagenomic exploration of antibiotic resistome in treated wastewater effluents and their receiving water
    Shahbaz Raza, Hyejun Jo, Jungman Kim, Hanseob Shin, Hor-Gil Hur, Tatsuya Unno
    Science of The Total Environment.2021; 765: 142755.     CrossRef
  • Study of Heavy Metals and Microbial Communities in Contaminated Sediments Along an Urban Estuary
    Jun Yi, Linus Shing Him Lo, Hongbin Liu, Pei-Yuan Qian, Jinping Cheng
    Frontiers in Marine Science.2021;[Epub]     CrossRef
  • Acinetobacter sp. as the key player in diesel oil degrading community exposed to PAHs and heavy metals
    J. Czarny, J. Staninska-Pięta, A. Piotrowska-Cyplik, W. Juzwa, A. Wolniewicz, R. Marecik, Ł. Ławniczak, Ł. Chrzanowski
    Journal of Hazardous Materials.2020; 383: 121168.     CrossRef
  • Antibiotic Resistance in Recreational Waters: State of the Science
    Sharon P. Nappier, Krista Liguori, Audrey M. Ichida, Jill R. Stewart, Kaedra R. Jones
    International Journal of Environmental Research and Public Health.2020; 17(21): 8034.     CrossRef
  • Evidence of mutations conferring resistance to clarithromycin in wastewater and activated sludge
    Anna Gnida, Ewa Felis, Aleksandra Ziembińska-Buczyńska, Aneta Łuczkiewicz, Joanna Surmacz-Górska, Krystyna Olańczuk-Neyman
    3 Biotech.2020;[Epub]     CrossRef
  • Exploring the antibiotic resistome in activated sludge and anaerobic digestion sludge in an urban wastewater treatment plant via metagenomic analysis
    Keunje Yoo, Hyunji Yoo, Jangho Lee, Eun Joo Choi, Joonhong Park
    Journal of Microbiology.2020; 58(2): 123.     CrossRef
  • Specificity in the Susceptibilities of Escherichia coli, Pseudomonas aeruginosa and Staphylococcus aureus Clinical Isolates to Six Metal Antimicrobials
    Natalie Gugala, Dennis Vu, Michael D. Parkins, Raymond J. Turner
    Antibiotics.2019; 8(2): 51.     CrossRef
  • Metagenomic and Resistome Analysis of a Full-Scale Municipal Wastewater Treatment Plant in Singapore Containing Membrane Bioreactors
    Charmaine Ng, Boonfei Tan, Xiao-Tao Jiang, Xiaoqiong Gu, Hongjie Chen, Bradley William Schmitz, Laurence Haller, Francis Rathinam Charles, Tong Zhang, Karina Gin
    Frontiers in Microbiology.2019;[Epub]     CrossRef
  • Distribution and co-occurrence of antibiotic and metal resistance genes in biofilms of an anthropogenically impacted stream
    Alescia A. Roberto, Jonathon B. Van Gray, Jean Engohang-Ndong, Laura G. Leff
    Science of The Total Environment.2019; 688: 437.     CrossRef
  • The correlation between antibiotic resistance gene abundance and microbial community resistance in pig farm wastewater and surrounding rivers
    Yiwen Yang, Zixiao Liu, Sicheng Xing, Xindi Liao
    Ecotoxicology and Environmental Safety.2019; 182: 109452.     CrossRef
  • Critical review of ARGs reduction behavior in various sludge and sewage treatment processes in wastewater treatment plants
    Gang Xue, Mingji Jiang, Hong Chen, Min Sun, Yunfan Liu, Xiang Li, Pin Gao
    Critical Reviews in Environmental Science and Technology.2019; 49(18): 1623.     CrossRef
  • Plastics in the marine environment are reservoirs for antibiotic and metal resistance genes
    Yuyi Yang, Guihua Liu, Wenjuan Song, Chen Ye, Hui Lin, Zan Li, Wenzhi Liu
    Environment International.2019; 123: 79.     CrossRef
  • Mercury/silver resistance genes and their association with antibiotic resistance genes and microbial community in a municipal wastewater treatment plant
    Li Yuan, Zheng-Hao Li, Ming-Qi Zhang, Wei Shao, Yang-Yang Fan, Guo-Ping Sheng
    Science of The Total Environment.2019; 657: 1014.     CrossRef
  • Metagenomic insights into the abundance and composition of resistance genes in aquatic environments: Influence of stratification and geography
    Yuyi Yang, Zan Li, Wenjuan Song, Linna Du, Chen Ye, Bo Zhao, Wenzhi Liu, Danli Deng, Yongtai Pan, Hui Lin, Xinhua Cao
    Environment International.2019; 127: 371.     CrossRef
  • Rhodoferax lacus sp. nov., isolated from a large freshwater lake
    Miri Park, Jaeho Song, Gi Gyun Nam, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(10): 3135.     CrossRef
  • Monitoring Antimicrobial Resistance Dissemination in Aquatic Systems
    Charmaine Ng, Karina Yew-Hoong Gin
    Water.2019; 11(1): 71.     CrossRef
  • Graphene oxide as a tool for antibiotic-resistant gene removal: a review
    Zuzana Bytesnikova, Lukas Richtera, Kristyna Smerkova, Vojtech Adam
    Environmental Science and Pollution Research.2019; 26(20): 20148.     CrossRef
  • Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent
    Rahat Zaheer, Steven M. Lakin, Rodrigo Ortega Polo, Shaun R. Cook, Francis J. Larney, Paul S. Morley, Calvin W. Booker, Sherry J. Hannon, Gary Van Domselaar, Ron R. Read, Tim A. McAllister
    BMC Microbiology.2019;[Epub]     CrossRef
Comparative genomic analysis of Geosporobacter ferrireducens and its versatility of anaerobic energy metabolism
Man-Young Jung , So-Jeong Kim , Jong-Geol Kim , Heeji Hong , Joo-Han Gwak , Soo-Je Park , Yang-Hoon Kim , Sung-Keun Rhee
J. Microbiol. 2018;56(5):365-371.   Published online May 2, 2018
DOI: https://doi.org/10.1007/s12275-018-7451-6
  • 404 View
  • 0 Download
  • 8 Crossref
AbstractAbstract PDF
Members of the family Clostridiaceae within phylum Firmicutes are ubiquitous in various iron-reducing environments. However, genomic data on iron-reducing bacteria of the family Clostridiaceae, particularly regarding their environmental distribution, are limited. Here, we report the analysis and comparison of the genomic properties of Geosporobacter ferrireducens IRF9, a strict anaerobe that ferments sugars and degrades toluene under iron-reducing conditions, with those of the closely related species, Geosporobacter subterraneus DSM 17957. Putative alkyl succinate synthase-encoding genes were observed in the genome of strain IRF9 instead of the typical benzyl succinate synthase-encoding genes. Canonical genes associated with iron reduction were not observed in either genome. The genomes of strains IRF9 and DMS 17957 harbored genes for acetogenesis, that encode two types of Rnf complexes mediating the translocation of H+ and Na+ ions, respectively. Strain IRF9 harbored two different types of ATPases (Na+-dependent F-type ATPase and H+- dependent V-type ATPase), which enable full exploitation of ion gradients. The versatile energy conservation potential of strain IRF9 promotes its survival in various environmental conditions.

Citations

Citations to this article as recorded by  
  • Promoting effects and mechanisms of common iron oxides on corrosion of carbon steel induced by methanogenic microbiota
    Jianping Wu, Weidong Zhang, Shanyu Xie, Zhaoshou Wang, Yuanpeng Wang
    Journal of Environmental Chemical Engineering.2025; 13(2): 115769.     CrossRef
  • Enclosure restoration regulates epiphytic microbial communities involved in carbon sequestration in a restored urban lake: A new insight from the stability of dissolved organic matter
    Siwen Hu, Dayong Zhao, Rujia He, Xiaojian Sun, Jin Zeng
    Journal of Cleaner Production.2025; 501: 145295.     CrossRef
  • Co-exposure of microplastics and polychlorinated biphenyls strongly influenced the cycling processes of typical biogenic elements in anoxic soil
    Guangxue Xie, Qian Hou, Lianzhen Li, Yan Xu, Shaochong Liu, Xilin She
    Journal of Hazardous Materials.2024; 465: 133277.     CrossRef
  • A review on microbial diversity and genetic markers involved in methanogenic degradation of hydrocarbons: futuristic prospects of biofuel recovery from contaminated regions
    Kriti Sengupta, Siddhartha Pal
    Environmental Science and Pollution Research.2021; 28(30): 40288.     CrossRef
  • Iron and total organic carbon shape the spatial distribution pattern of sediment Fe(III) reducing bacteria in a volcanic lake, NE China
    Yue Zhan, Mengran Yang, Yu Zhang, Jian Yang, Weidong Wang, Lei Yan, Shuang Zhang
    World Journal of Microbiology and Biotechnology.2021;[Epub]     CrossRef
  • Maize straw biochar addition inhibited pentachlorophenol dechlorination by strengthening the predominant soil reduction processes in flooded soil
    Min Zhu, Xiaofei Lv, Ashley E. Franks, Philip C. Brookes, Jianming Xu, Yan He
    Journal of Hazardous Materials.2020; 386: 122002.     CrossRef
  • New Frontiers of Anaerobic Hydrocarbon Biodegradation in the Multi-Omics Era
    Krisztián Laczi, Ágnes Erdeiné Kis, Árpád Szilágyi, Naila Bounedjoum, Attila Bodor, György Erik Vincze, Tamás Kovács, Gábor Rákhely, Katalin Perei
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Enrichment of Marinobacter sp. and Halophilic Homoacetogens at the Biocathode of Microbial Electrosynthesis System Inoculated With Red Sea Brine Pool
    Manal F. Alqahtani, Suman Bajracharya, Krishna P. Katuri, Muhammad Ali, Ala’a Ragab, Grégoire Michoud, Daniele Daffonchio, Pascal E. Saikaly
    Frontiers in Microbiology.2019;[Epub]     CrossRef
Review
MINIREVIEW] Cure of tuberculosis using nanotechnology: An overview
Rout George Kerry , Sushanto Gouda , Bikram Sil , Gitishree Das , Han-Seung Shin , Gajanan Ghodake , Jayanta Kumar Patra
J. Microbiol. 2018;56(5):287-299.   Published online May 2, 2018
DOI: https://doi.org/10.1007/s12275-018-7414-y
  • 359 View
  • 0 Download
  • 10 Crossref
AbstractAbstract PDF
Mycobacterium tuberculosis is the causative agent of tuberculosis (TB), a major health issue of the present era. The bacterium inhabits the host macrophage and other immune cells where it modulates the lysosome trafficking protein, hinders the formation of phagolysosome, and blocks the TNF receptor- dependent apoptosis of host macrophage/monocytes. Other limitations such as resistance to and low bioavailability and bio-distribution of conventional drugs aid to their high virulence and human mortality. This review highlights the use of nanotechnology-based approaches for drug formulation and delivery which could open new avenues to limit the pathogenicity of tuberculosis. Moreover phytochemicals, such as alkaloids, phenols, saponins, steroids, tannins, and terpenoids, extracted from terrestrial plants and mangroves seem promising against M. tuberculosis through different molecular mechanisms. Further understanding of the genomics and proteomics of this pathogenic microbe could also help overcome various research gaps in the path of developing a suitable therapy against tuberculosis.

Citations

Citations to this article as recorded by  
  • Advances in nanomaterials-assisted drug delivery, diagnosis, and action towards drug-resistant Mycobacterium
    Parikshana Mathur, Pinky Choudhary, Rajkuberan Chandrasekaran, Ragini Singh, Hemant Kumar Daima
    Progress in Biophysics and Molecular Biology.2026; 199: 1.     CrossRef
  • Mechanisms of Antibiotic Resistance and Novel Therapeutic Approaches for Mycobacterium tuberculosis: A Narrative Review With a Focus on Tuberculosis Mutations in Iran
    Ali Bayat Bodaghi, Aref Shariati, Jebreil Shamseddin, Amir Bayat Bodaghi, Mina Rezaei, Abbas Farahani
    Health Science Reports.2025;[Epub]     CrossRef
  • Multi-purpose prototypes for extrapulmonary Mycobacterium tuberculosis targeting: A regenerative medicine perspective
    Mashudu T. Mphaphuli, Mduduzi N. Sithole, Pradeep Kumar, Pierre P.D. Kondiah, Mostafa Mabrouk, Yahya E. Choonara
    Journal of Drug Delivery Science and Technology.2023; 89: 105039.     CrossRef
  • Clay minerals-based drug delivery systems for anti-tuberculosis drugs
    Saeida Saadat, Deepak Rawtani, Garvita Parikh
    Journal of Drug Delivery Science and Technology.2022; 76: 103755.     CrossRef
  • A Systematic Review on Antituberculosis Drug Discovery and Antimycobacterial Potential of Biologically Synthesized Silver Nanoparticles: Overview and Future Perspectives
    Christian K. Ezeh, Chibuzor N. Eze, Uju M. E. Dibua, Stephen C. Emencheta
    Infectious Microbes and Diseases.2022; 4(4): 139.     CrossRef
  • Treatment of Tuberculosis in Nano Era: Recent Avenues
    Ritu Rathi, Manju Nagpal, Malkiet Kaur, Priyansh Ballouria, Redhima Dutta, Geeta Aggarwal, Sandeep Arora
    Current Bioactive Compounds.2022;[Epub]     CrossRef
  • Detection of Mycobacterium Tuberculosis by Magnetic Nanoparticle Capture-Polymerase Chain Reaction
    Zhanying Li, Lei Zhao, Lili Diao, Pei Wang, Conglu Che, Yanqing Tian, Xiuzheng Wang
    Science of Advanced Materials.2021; 13(11): 2116.     CrossRef
  • Inhalable linezolid loaded PLGA nanoparticles for treatment of tuberculosis: Design, development and in vitro evaluation
    Sunny Shah, Dhanya Cristopher, Shweta Sharma, Moinuddin Soniwala, Jayant Chavda
    Journal of Drug Delivery Science and Technology.2020; 60: 102013.     CrossRef
  • Enhancement of cell proliferation and motility of mammalian cells grown in co-culture with Pichia pastoris expressing recombinant human FGF-2
    Henry Hieu M. Le, David Vang, Nadia Amer, Tou Vue, Colwin Yee, Hyam Kaou, Joseph S. Harrison, Nan Xiao, Joan Lin-Cereghino, Geoff P. Lin-Cereghino, Der Thor
    Protein Expression and Purification.2020; 176: 105724.     CrossRef

  • Silver Nanoparticles for the Therapy of Tuberculosis


    Alexandru-Flaviu Tăbăran, Cristian Tudor Matea, Teodora Mocan, Alexandra Tăbăran, Marian Mihaiu, Cornel Iancu, Lucian Mocan
    International Journal of Nanomedicine.2020; Volume 15: 2231.     CrossRef
Journal Articles
UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction
Seong-In Na , Yeong Ouk Kim , Seok-Hwan Yoon , Sung-min Ha , Inwoo Baek , Jongsik Chun
J. Microbiol. 2018;56(4):280-285.   Published online February 28, 2018
DOI: https://doi.org/10.1007/s12275-018-8014-6
  • 3,947 View
  • 0 Download
  • 1,146 Crossref
AbstractAbstract PDF
Genome-based phylogeny plays a central role in the future taxonomy and phylogenetics of Bacteria and Archaea by replacing 16S rRNA gene phylogeny. The concatenated core gene alignments are frequently used for such a purpose. The bacterial core genes are defined as single-copy, homologous genes that are present in most of the known bacterial species. There have been several studies describing such a gene set, but the number of species considered was rather small. Here we present the up-to-date bacterial core gene set, named UBCG, and software suites to accommodate necessary steps to generate and evaluate phylogenetic trees. The method was successfully used to infer phylogenomic relationship of Escherichia and related taxa and can be used for the set of genomes at any taxonomic ranks of Bacteria. The UBCG pipeline and file viewer are freely available at https://www.ezbiocloud.net/ tools/ubcg and https://www.ezbiocloud.net/tools/ubcg_viewer, respectively.

Citations

Citations to this article as recorded by  
  • Genome Sequence Analysis Reveals Polyphyly in the Genus Pseudaestuariivita and Supports Reclassification of the Species Pseudaestuariivita rosea as Parasulfitobacter roseus comb.nov
    Mengdan He, Xiaokun Xu, Qingjie Xue, Ang Liu
    Current Microbiology.2026;[Epub]     CrossRef
  • Argyrolobium legumes from an African centre of endemism associate with novel Bradyrhizobium species harbouring unique sets of symbiosis genes
    Mabodiba M. Maake, Chrizelle W. Beukes, Magriet A. van der Nest, Juanita R. Avontuur, Esther K. Muema, Tomasz Stępkowski, Stephanus N. Venter, Emma T. Steenkamp
    Molecular Phylogenetics and Evolution.2026; 214: 108471.     CrossRef
  • Genome-based reassessment of Sphingobacterium reveals the limitation of the fixed dDDH threshold for prokaryotic species delineation
    Shuai Li, Xin-Ran Wang, Wei Zhang, Wen-Jun Li
    Current Research in Microbial Sciences.2026; 10: 100524.     CrossRef
  • Description of Albimonas marina sp. nov., isolated from sea sand on the Yellow Sea Coast
    Hyunwoo Jung, Young Rok Kim, Eunseo Cho, Jung-Sook Lee, Jung-Hoon Yoon, Ampaitip Sukhoom, Wonyong Kim
    Current Microbiology.2026;[Epub]     CrossRef
  • Rhizorhabdus antheiae sp. nov. and Sphingomonas eleionomae sp. nov., new aerobic anoxygenic phototrophs isolated from a Manitoban marsh
    Katia Messner, John A. Kyndt, Vladimir Yurkov
    International Journal of Systematic and Evolutionary Microbiology .2026;[Epub]     CrossRef
  • Structural insights into the assembly and evolution of a complex bacterial flagellar motor
    Xueyin Feng, Shoichi Tachiyama, Jing He, Siqi Zhu, Hang Zhao, Jack M. Botting, Yanran Liu, Yuanyuan Chen, Canfeng Hua, María Lara-Tejero, Matthew A. B. Baker, Xiang Gao, Jun Liu, Beile Gao
    Nature Microbiology.2026;[Epub]     CrossRef
  • Marinobacter liaoningensis sp. nov., isolated from the marine sediment
    Jitao Wang, Zimu Zhu, Jingjing Zhu, Chen Shen, Juanjuan Liu, Zhenxing Peng, Bo Yang, Yanfeng Zhang, Zemin Fang
    Antonie van Leeuwenhoek.2026;[Epub]     CrossRef
  • Phenotypic and Phylogenomic Analyses of Saliniferula longa gen. nov., sp. nov.
    Jaewoo Yoon, Ji Hoon Oh
    Current Microbiology.2026;[Epub]     CrossRef
  • Phaeovulum Molybdatiresistens sp. nov., a Molybdate-resistant Bacterium Isolated from Eutrophic Pond Water
    Jianjun Song, Yuanshuo Qiu, Ke Ma, Yuelin Liu, Jia Wang, Yaqi Liu, Xiaolong Song, Kaiyue Wang, Jinhua Hu, Weidong Mu, Yanfang Zhao, Aijv Liu, Rui Zhang, Hongliang Liu
    Current Microbiology.2026;[Epub]     CrossRef
  • Litorerythrobacter xanthomarinus gen. nov., sp. nov., a novel marine bacterium with distinct phenotypic traits from tidal mudflat sediment
    Akila Kathiresan, Hyung-Seop Kim, Cong Li, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
    Antonie van Leeuwenhoek.2026;[Epub]     CrossRef
  • Hahella aquimaris sp. nov., a bacterium producing prodigiosin isolated from aquaculture seawater
    Seung Yeol Shin, Hyomin Seo, Yihyun Jeon, Heeyoung Kang, Hye Seon Song, Song-Ih Han, Jaeho Song
    Antonie van Leeuwenhoek.2026;[Epub]     CrossRef
  • Unveiling novel antimicrobial peptides from the ruminant gastrointestinal microbiomes: A deep learning-driven approach yields an anti-MRSA candidate
    Hong Shen, Yanru Li, Qingjie Pi, Junru Tian, Xianghan Xu, Zan Huang, Jinhu Huang, Cong Pian, Shengyong Mao
    Journal of Advanced Research.2025; 77: 821.     CrossRef
  • Altererythrobacter arenosus sp. nov., Isolated from Marine Sediment
    Soyeon Ahn, Yunjeong Lee, Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Sook Lee, Jung-Hoon Yoon, Ampaitip Sukhoom, Wonyong Kim
    Current Microbiology.2025;[Epub]     CrossRef
  • A metagenomic ‘dark matter’ enzyme catalyses oxidative cellulose conversion
    Clelton A. Santos, Mariana A. B. Morais, Fernanda Mandelli, Evandro A. Lima, Renan Y. Miyamoto, Paula M. R. Higasi, Evandro A. Araujo, Douglas A. A. Paixão, Joaquim M. Junior, Maria L. Motta, Rodrigo S. A. Streit, Luana G. Morão, Claudio B. C. Silva, Luci
    Nature.2025; 639(8056): 1076.     CrossRef
  • Paenibacillus zeirhizosphaerae sp. nov., isolated from surface of the maize (Zea mays) roots in a horticulture field, Hungary
    Dalma Márton, Milán Farkas, Anna Bedics, Erika Tóth, András Táncsics, Károly Bóka, Gergely Maróti, Erzsébet Baka, Balázs Kriszt, Mátyás Cserháti
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Characterisation of Aequorivita ciconiae sp. nov., isolated from oriental stork, Ciconia boyciana
    Jeong-Eun Han, Seomin Kang, So-Yeon Lee, Jin-Woo Bae
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Genomic insights into Marinospirillum alkalitolerans sp. nov., a novel PHB producing bacterium from an Indian impact crater, and an emended description of family Oceanospirillaceae
    Amaraja Joshi, Sonia Thite, Devika Godbole, Dibyajyoti Boruah, Dev Kant Sindhu, Atharva Prabhu, Neetha Joseph, Amit Yadav, Avinash Sharma, Tushar Lodha
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Cerasicoccus fimbriatus sp. nov., isolated from the mid-ridge of the Southwest Indian Ocean
    Xuanyun Qiu, Beihan Chen, Dan Lin, Guohua Liu, Zhiyi Su, Mingzhe Zhang, Kai Tang
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Thiobacillus sedimenti sp. nov., a chemolithoautotrophic sulphur-oxidizing bacterium isolated from freshwater sediment
    Chenming Dai, Guangye Zhang, Weitie Lin, Jianfei Luo
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Arvimicrobium flavum gen. nov., sp. nov., A Novel Genus in the Family Phyllobacteriaceae Isolated From Forest Soil
    Hyosun Lee, Dhiraj Kumar Chaudhary, Ki-Eun Lee, In-Tae Cha, Won-Jae Chi, Sunho Park, Taegun Seo, Dong-Uk Kim
    Current Microbiology.2025;[Epub]     CrossRef
  • Flavobacterium arundinis sp. nov., Flavobacterium calami sp. nov., Flavobacterium helocola sp. nov. and Flavobacterium flavipallidum sp. nov., isolated from stagnant water in a clump of Phragmites japonica Steud
    Sunho Park, Inhyup Kim, Haejin Woo, Hyunji Lee, Subin Yook, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Facivitalis istanbulensis gen. nov., sp. nov., a novel member of the family Sphingomonadaceae with the potential for aromatic-degradation isolated from Jet A1 fuel
    Simge Arkan-Ozdemir, Miray Üstüntürk-Onan, Esra Ilhan-Sungur
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Streptacidiphilus alkalitolerans sp. nov., Streptacidiphilus cavernicola sp. nov. and Streptacidiphilus jeojiensis sp. nov. isolated from a cave, and an emended description of the genus Streptacidiphilus
    Soon Dong Lee, Hong Lim Yang, In Seop Kim
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Brevibacterium litoralis sp. nov., a cellulose-degrading strain isolated from marine surface sediment
    Quan Yang, Aolin Zhao, Haifei Liu, Jiawei Li, Shujing Wu, Ying Huang, Jie Weng, Mingguo Jiang, Yi Jiang
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Microbacterium rhizophilus sp. nov., an indole acetic acid-producing actinobacterium isolated from rhizosphere soil
    Haifei Liu, Quan Yang, Jiawei Li, Lifang Yang, Aolin Zhao, Ying Huang, Hongcun Liu, Shujing Wu, Mingguo Jiang
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Roseobacter sinensis sp. nov., a marine bacterium capable to synthesize arachidonic acid
    Hong-Chuan Wang, Meng-Han Huang, Dan-Yuan Guo, Wen-Li Liu, Zi-Wen Yang, Dao-Feng Zhang, Wen-Jun Li
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Comprehensive genomic and phenotypic characterization of thermophilic bacterium Sinimarinibacterium thermocellulolyticum sp. nov. HSW-8T, a cellulase-producing bacterium isolated from hot spring water in South Korea
    Yue Jiang, Zhun Li
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Mesorhizobium salmacidum sp. nov. and Mesorhizobium argentiipisi sp. nov. are symbionts of the dry-land forage legumes Lessertia diffusa and Calobota sericea
    Esther K. Muema, Melandré van Lill, Stephanus N. Venter, Wai Yin Chan, Ricu Claassens, Emma T. Steenkamp
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Tetrameric PilZ protein stabilizes stator ring in complex flagellar motor and is required for motility in Campylobacter jejuni
    Yuanyuan Chen, Shoichi Tachiyama, Yuqian Li, Xueyin Feng, Hang Zhao, Yanmin Wu, Yu Guo, María Lara-Tejero, Canfeng Hua, Jun Liu, Beile Gao
    Proceedings of the National Academy of Sciences.2025;[Epub]     CrossRef
  • Proposal of Lactococcus intestinalis Sun et al. 2024 as a Later Heterotypic Synonym of Lactococcus muris Afrizal et al. 2023
    Xin-Yu Zhu, Chun Tao Gu
    Current Microbiology.2025;[Epub]     CrossRef
  • Isolation and characterization of a novel lytic phage K14-2 infecting diverse species of the genus Klebsiella and Raoultella
    Seomin Kang, Jeong-Eun Han, Young-Sik Choi, In-Chul Jeong, Jin-Woo Bae
    Frontiers in Microbiology.2025;[Epub]     CrossRef
  • Jannaschia ovalis sp. nov., a marine bacterium isolated from a tidal flat sediment in the Republic of Korea
    Dae Young Kwon, Sang Hyun Lee, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, Yeonjae Yoo, Jae-Jin Kim
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Erwinia aeris sp. nov., A Novel Bacterium Isolated from the Surface of an Ore in Hubei Province, China
    He-Bao Guo, Hong-Tu Zhu, Yi-Fan Zhang, Fu Yang, Xiao-Tong Ma, Shi-Gui Li, Hai-Lei Wei, Xiao-Xia Zhang
    Current Microbiology.2025;[Epub]     CrossRef
  • Assessing hydrocarbon degradation capacity of Isoptericola peretonis sp. nov. and related species: a comparative study
    Àngela Vidal-Verdú, Adriel Latorre-Pérez, Javier Pascual, Ruth Mañes-Collado, Aitana Nevot-Terraes, Manuel Porcar
    Frontiers in Microbiology.2025;[Epub]     CrossRef
  • Physiological and Genomic Elucidation of Cold-Resilient Rhizobacteria Reveals Plant Growth Promotion by Siderophore Optimization and Enhanced Biocontrol Potential Against Fungal Pathogens
    Pallavi Sharma, Girija Kaushal, Shruti Sinai Borker, Ayush Lepcha, Anil Kumar, Rakshak Kumar
    Journal of Plant Growth Regulation.2025; 44(12): 6953.     CrossRef
  • Unveiling root nodulation in Tribulus terrestris and Roystonea regia via metagenomics analysis
    Saleh Rahimlou, Mahdieh S. Hosseyni Moghadam, Romina Gazis, Elena Karlsen-Ayala, Mohammad Bahram, Timothy Y. James, Leho Tedersoo
    Molecular Genetics and Genomics.2025;[Epub]     CrossRef
  • Methylobacterium litchii sp. nov., Methylobacterium guangdongense sp. nov. and Methylorubrum subtropicum sp. nov., isolated from the phyllosphere of litchi
    Ruifeng Gao, Jiali Li, Huaping Li, Xinqiang Xie, Guang-Da Feng, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • The Genomic Characteristics of Potential Probiotics: Two Streptococcus salivarius Isolates from a Healthy Individual in China
    Mingyue Sun, Qian Li, Feiran Zhang, Ding Yao, Wenhua Huang, Qingyu Lv, Hua Jiang, Decong Kong, Yuhao Ren, Shaolong Chen, Yongqiang Jiang, Peng Liu
    Microorganisms.2025; 13(3): 694.     CrossRef
  • High diversity of nitrifying bacteria and archaea in biofilms from a subsea tunnel
    Linnea F M Kop, Hanna Koch, Paula Dalcin Martins, Carolina Suarez, Sabina Karačić, Frank Persson, Britt-Marie Wilén, Per Hagelia, Mike S M Jetten, Sebastian Lücker
    FEMS Microbiology Ecology.2025;[Epub]     CrossRef
  • Novel Gene Clusters for Secondary Metabolite Synthesis in Mesophotic Sponge‐Associated Bacteria
    Nuo Chen, Liwei Liu, Jingxuan Wang, Deqiang Mao, Hongmei Lu, Tânia Keiko Shishido, Shuai Zhi, Hua Chen, Shan He
    Microbial Biotechnology.2025;[Epub]     CrossRef
  • Enterococcus hailinensis sp. nov., Isolated from Traditional Chinese Pickle
    Ting-Yu Wang, Hao Wang, Chun Tao Gu
    Current Microbiology.2025;[Epub]     CrossRef
  • Three Novel Bacterial Species, Roseateles flavus sp. nov., Roseateles paludis sp. nov., and Roseateles hydrophilus sp. nov., Isolated from Various Water-Related Environments
    Haejin Woo, Geeta Chhetri, Inhyup Kim, Sunho Park, Hyunji Lee, Subin Yook, Taegun Seo
    Current Microbiology.2025;[Epub]     CrossRef
  • Genome mining and metabolite profiling illuminate the taxonomy status and the cytotoxic activity of a mangrove-derived Microbacterium alkaliflavum sp. nov
    Wen-Jin Hu, Li-Xian Deng, Yi-Ying Huang, Xiao-Chun Wang, Jin-Ling Qing, Hao-Jun Zhu, Xing Zhou, Xiao-Ying Zhou, Jie-Mei Chu, Xinli Pan
    BMC Microbiology.2025;[Epub]     CrossRef
  • Curvibacter soli sp. nov., Extensimonas soli sp. nov., Pseudarthrobacter naphthalenicus sp. nov. and Terripilifer ovatus gen. nov., sp. nov., four new species isolated from polluted soil
    Ze-Shen Liu, Ke-Huan Wang, Xiao-Kang Wang, Man Cai, Mei-Ling Yang, Wen-Ke Yang, De-Feng Li, Shuang-Jiang Liu
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Inconstantimicrobium mannanitabidum sp. nov., a novel member of the family Clostridiaceae isolated from anoxic soil under the treatment of reductive soil disinfestation
    Atsuko Ueki, Akio Tonouchi, Sachi Honma, Nobuo Kaku, Katsuji Ueki
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Genomic Scale Analysis Foresees Enteroprotective and Butyrogenic Properties in Brazilian Isolates of Lactiplantibacillus plantarum
    Thayra Gomes dos Santos, Karina Araujo Gomes dos Santos, Eddy José Francisco de Oliveira, Bertram Brenig, Elinalva Maciel Paulo, Pedro Henrique Marques, Valbert Nascimento Cardoso, Flávia Figueira Aburjaile, Siomar Castro Soares, Wanderson Marques da Silv
    Probiotics and Antimicrobial Proteins.2025; 17(5): 3713.     CrossRef
  • Comprehensive Phenotypic Characterization and Genomic Analysis Unveil the Probiotic Potential of Bacillus velezensis K12
    Yingying Tang, Tian Li, Yihong Huang, Liangliang Wu, Xiaobo Liu, Ruichao Yue, Jianmin Yuan
    Animals.2025; 15(6): 798.     CrossRef
  • Halomonas pelophila sp. nov., isolated from mud and Halomonas aquatica sp. nov., isolated from marine water
    Subin Yook, Inhyup Kim, Sunho Park, Haejin Woo, Hyunji Lee, Taegun Seo
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Bioremediation of chromium (VI) from mining-contaminated soil using Klebsiella sp. (BH-A1): environmental implications
    Anjali Srivastava, Asha Lata Singh, Aniruddha Kumar, Alok Kumar
    Environmental Geochemistry and Health.2025;[Epub]     CrossRef
  • Superior Resolution Profiling of the Coleofasciculus Microbiome by Amplicon Sequencing of the Complete 16S rRNA Gene and ITS Region
    Pia Marter, Heike M. Freese, Victoria Ringel, Henner Brinkmann, Silke Pradella, Manfred Rohde, Michal Jarek, Cathrin Spröer, Irene Wagner‐Döbler, Jörg Overmann, Boyke Bunk, Jörn Petersen
    Environmental Microbiology Reports.2025;[Epub]     CrossRef
  • Sulfurimonas microaerophilic sp. nov. and Sulfurimonas diazotrophicus sp. nov.: Two Novel Nitrogen-Fixing and Hydrogen- and Sulfur-Oxidizing Chemolithoautotrophs Within the Campylobacteria Isolated from Mangrove Sediments
    Yangsheng Zhong, Yufei Li, Zhaodi Wang, Liang Cui, Shiwei Lv, Han Zhu, Qing Yuan, Qiliang Lai, Shasha Wang, Lijing Jiang
    Microorganisms.2025; 13(4): 713.     CrossRef
  • Uliginosibacterium silvisoli sp. nov., Isolated from Subtropical Forest Soil in Hunan Province, China
    Yu Lv, Qi Zhang, Le Liu, Jian He, Shimei Wang, Qirong Shen
    Current Microbiology.2025;[Epub]     CrossRef
  • Evidence of in vitro mecB -mediated β-lactam antibiotic resistance transfer to Staphylococcus aureus from Macrococcus psychrotolerans sp. nov., a psychrophilic bacterium
    Ivana Mašlaňová, Vojtěch Kovařovic, Tibor Botka, Pavel Švec, Ivo Sedláček, Ondrej Šedo, Adéla Finstrlová, Meina Neumann-Schaal, Sarah Kirstein, Sybille Schwendener, Eva Staňková, Kristína Rovňáková, Petr Petráš, Jiří Doškař, Vincent Perreten, Roman Pantůč
    Applied and Environmental Microbiology.2025;[Epub]     CrossRef
  • Mixotrophic cyanobacteria are critical active diazotrophs in polychlorinated biphenyl-contaminated paddy soil
    Wenbo Hu, Ying Teng, Xiaomi Wang, Yongfeng Xu, Yi Sun, Hongzhe Wang, Yanning Li, Shixiang Dai, Ming Zhong, Yongming Luo
    ISME Communications.2025;[Epub]     CrossRef
  • Meridianimarinicoccus marinus sp. nov., Isolated from Tidal Flat
    Min-Seok Kang, Jae-Yon Yu, Hyung-Seop Kim, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
    Current Microbiology.2025;[Epub]     CrossRef
  • Metabolomic and genomic insights into Micromonospora carbonacea subsp. caeruleus for anti-colorectal compound
    Tepakorn Kongsaya, Nuttaporn Emthomya, Chananan Ngamcharungchit, Aiyada Aroonsri, Umaporn Uawisetwathana, Thapanee Pruksatrakul, Jirayut Euanorasetr, Bungonsiri Intra
    Applied Microbiology and Biotechnology.2025;[Epub]     CrossRef
  • Marivivens marinum sp. nov., isolated from tidal flat, Gochang, South Korea
    Min-Seok Kang, Hyung-Seop Kim, Jae-yon Yu, Sathiyaraj Srinivasan, Sang-Seob Lee
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Antrihabitans spumae sp. nov., a novel bacterium isolated from stable foams formed in wastewater treatment plants and emended description of the genus Antrihabitans
    Jhon A. Suescún-Sepúlveda, Raúl Riesco, Steve Petrovski, Jacques Soddell, Vartul Sangal, Amanda L. Jones, Fernando Sánchez-Juanes, Robert J. Seviour, Michael Goodfellow, Martha E. Trujillo
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Insights into Leuconostoc-clade as starters in Chinese paocai: Shaping microbial communities for rapid, safe, and flavor-preserving fermentation
    Xinyu Hu, Mengke Cheng, Meng Zhang, Biyue Yang, Rong Wang, Juan Bai, Jiayan Zhang, Wei Wei, Lin Zhu, Xiang Xiao
    Food Bioscience.2025; 68: 106410.     CrossRef
  • Buchananella felis sp. nov. isolated from feline pyothorax
    Simon Feyer, Stephanie Fuss, Natascha Gross, Sandra Zumwald, Isabelle Brodard, Sonja Kittl
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Genome mining reveals the biosynthetic potential of a novel Lysinibacillus zambalensis sp. nov., isolated from a hyperalkaline spring
    Joyce Amarachi Aja, Lawrence Dave Llorin, Kenji Rowel Q. Lim, Jade Joshua Teodosio, Erwin John Sioson, Ron L. Dy, Carlo A. Arcilla, Doralyn S. Dalisay, Jose Enrico Hizon Lazaro
    Archives of Microbiology.2025;[Epub]     CrossRef
  • Genetic and species rearrangements in microbial consortia impact biodegradation potential
    Zaki Saati-Santamaría, Pilar Navarro-Gómez, Juan A Martínez-Mancebo, Maitane Juárez-Mugarza, Amando Flores, Inés Canosa
    The ISME Journal.2025;[Epub]     CrossRef
  • Massilia paldalensis sp. nov., Isolated from Stream Bank Soil
    Nhi Thi Ai Nguyen, Jaisoo Kim
    Diversity.2025; 17(5): 327.     CrossRef
  • Description of Labrys sedimenti sp. nov., isolated from a diclofenac-degrading enrichment culture, and genome-based reclassification of Labrys portucalensis as a later heterotypic synonym of Labrys neptuniae
    Andrea Csépányi, András Táncsics, Márton Pápai, Erzsébet Baka, Erika Tóth, Károly Bóka, Hussein Daood, István Szabó, Balázs Kriszt
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Nocardioides eburneus sp. nov., isolated from commercial soil
    Min-Seok Kang, Jae-yon Yu, Yong Ho Kim, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Gracilibacillus pellucidus sp. nov., a moderately halophilic bacterium isolated from saline soil in Xinjiang province, China
    Zengqin Zhang, Hui Wang, Mengli Xia, Wenjing Li, Pan Zhang, Yanwei Wang, Linpei Liu, Peixin Li, Yong Zhuang, Furong Tan
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Pontibacter rufus sp. nov., Pontibacter humidus sp. nov. and Pontibacter coccineus sp. nov. isolated from UV-irradiated soil in Korea
    Seona Park, Hyang Burm Lee, Sathiyaraj Srinivasan, Myung Kyum Kim
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Insights into the bacterial fraction of sediments from the South China Sea: physiological, chemotaxonomic, and genomic characterization of seven novel members of the Bacillaceae family
    Shu-Tong Ge, Hong Cheng, Ying-Wen Zhong, Jia-Ling Tang, Xin-Yue Huang, Bin Wei, Yue-Hong Wu, Chun-Sheng Wang
    Frontiers in Microbiology.2025;[Epub]     CrossRef
  • A sustainable solution for eucalyptus cultivation under environmental stresses: novel Pseudomonas species with plant growth-promoting traits
    Tian Liu, Yuhan Jiang, Weishan Zhang, Lu Lin, Xinlei Fan
    Plant and Soil.2025;[Epub]     CrossRef
  • Cultivation and metabolic versatility of novel and ubiquitous chemolithoautotrophic Campylobacteria from mangrove sediments
    Liang Cui, Yangsheng Zhong, Yufei Li, Stefan M. Sievert, Zhaobin Huang, Wanpeng Wang, Maxim Rubin-Blum, Xiaxing Cao, Yong Wang, Zongze Shao, Qiliang Lai, Shasha Wang, Lijing Jiang, Weimin Sun
    Microbiology Spectrum.2025;[Epub]     CrossRef
  • Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs
    Marike Palmer, Nancy O. Nou, Lara A. Turello, Carolyn E. Power, John C. Ong, Jonathan K. Covington, Dengxun Lai, Xavier Mayali, Anna-Louise Reysenbach, Yan-Ling Qi, Jeremy A. Dodsworth, Jian-Yu Jiao, Lan Liu, Zheng-Han Lian, Meng-Meng Li, Yitai Liu, Ranja
    Systematic and Applied Microbiology.2025; 48(5): 126644.     CrossRef
  • Polyphasic taxonomy and genome mining of Desertivibrio insolitus gen. nov., sp. nov., a novel psychrotolerant pectin-degrading actinobacterium isolated from desert soil
    Shuai Li, Jun Liu, Huan-Huan He, Jia-Rui Han, Jie Huang, Wen-Hui Lian, Yong-Hong Liu, Lei Dong, Wen-Jun Li
    Current Research in Microbial Sciences.2025; 9: 100438.     CrossRef
  • Exploring the Biosynthetic Potential of Microorganisms from the South China Sea Cold Seep Using Culture-Dependent and Culture-Independent Approaches
    Gang-Ao Hu, Huai-Ying Sun, Qun-Jian Yin, He Wang, Shi-Yi Liu, Bin-Gui Wang, Hong Wang, Xin Li, Bin Wei
    Marine Drugs.2025; 23(8): 313.     CrossRef
  • Parerythrobacter aurantius sp. nov., a Member of the Family Erythrobacteraceae Isolated from a Coastal Breakwater Stone
    Yang Liu, Tao Pei, Juan Du, Ming-Rong Deng, Honghui Zhu
    Current Microbiology.2025;[Epub]     CrossRef
  • Oryzifoliimicrobium ureilyticus gen. nov., sp. nov., a Novel Phosphate-Solubilizing and Siderophore-Producing Bacterium Within the Family Rhizobiaceae
    Guo-Hong Liu, Ling Yao, Peng Gao, Shu-Qun Zhang, Bing Li, Christopher Rensing, Wen-Qing Li, Shun-Gui Zhou
    Current Microbiology.2025;[Epub]     CrossRef
  • Flavobacterium algoriphilum sp. nov., Flavobacterium arabinosi sp. nov., Flavobacterium cryoconiti sp. nov., Flavobacterium galactosi sp. nov., Flavobacterium melibiosi sp. nov., and Flavobacterium algoris sp. nov., six novel cold-adapted bacteria isolate
    Lei-Lei Yang, Yu-Hua Xin, Qing Liu
    BMC Microbiology.2025;[Epub]     CrossRef
  • Isoptericola rhizosphaerae sp. nov. and Isoptericola aurantiacus sp. nov. two novel bacteria isolated from rhizosphere soil
    Haifei Liu, Quan Yang, Jiawei Li, Fei Yang, Caifei Li, Ding Li, Ying Sun, Lifang Yang, Mingguo Jiang
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • A new nodule-associated bacterium, Cupriavidus consociatus sp. nov. Isolated from the root nodules of Leucaena sp. and Arachis sp. growing in a cacao field in Chiapas, Mexico
    Erika-Yanet Tapia-García, Belén Chávez-Ramírez, Violeta Larios-Serrato, Ivan Arroyo-Herrera, J. Antonio Ibarra, Paulina Estrada-de los Santos, Ying Ma
    PLOS One.2025; 20(5): e0324390.     CrossRef
  • Lacticaseibacillus suihuaensis sp. nov., Isolated from Traditional Chinese Pickle
    Xin-Yu Zhu, Chun Yan Li, Hao Wang, Chun Tao Gu
    Current Microbiology.2025;[Epub]     CrossRef
  • Isolation and characterization of Fibrella aquatica sp. nov. from freshwater, Fibrella musci sp. nov. from moss on soil and Fibrella arboris sp. nov. from moss on a tree
    Chunghwan Baek, Inhyup Kim, Sunho Park, Haejin Woo, Hyunji Lee, Subin Yook, Seunghui Kwak, Jisu Kim, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Coriander borne Salmonella superbug: genomic assessments of chromosomal and plasmid-associated resistance, virulence and MGEs of XDR Salmonella enterica Typhi NH1
    Noor Ul Huda, Khwaja Ali Hasan, Faizan Saleem, Shahida Naz, Saeed Khan, Zulfiqar Ali Mirani, Muhammad Noman Syed, Amal S. Alswat, Muhammad Sohail
    Pathogens and Global Health.2025; 119(5-6): 210.     CrossRef
  • Characterization of known and novel clinically important antibiotic resistance genes and novel microbes from wastewater-impacted high Arctic fjord sediments
    Manish P. Victor, Lise Øvreås, Nachiket P. Marathe
    Science of The Total Environment.2025; 985: 179699.     CrossRef
  • Isolation and characterization of Polaribacter sargassicola sp. nov. and Algibacter ulvanivorans sp. nov.: two novel species with ability to degrade algal polysaccharides
    Jin Li, Aihua Mao, Chao Peng, Linhui Li, Binghan Li, Lijuan Zhou, Yan Xu, Mingqi Zhong, Zhong Hu
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Emergence of a dual-threat ST1322 clinical Isolate: Hypervirulent and carbapenem-resistant Klebsiella pneumoniae revealed by genomic and virulence analysis
    Tianyao Liu, Xinyi Chen, Zhiyun Hao, Min Wang
    Biochemical and Biophysical Research Communications.2025; 779: 152425.     CrossRef
  • Genomic insights into Neopusillimonas aestuarii sp. nov., a novel estuarine bacterium with adaptations for ectoine biosynthesis and stress tolerance
    Kiran Kirdat, Umera Patwekar, Kunal Jain, Malad Mubarak, Pradeep Choudhary, Lucky Thakkar, Vipool Thorat, Datta Madamwar, Tushar Lodha, Amit Yadav
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Robertkochia aurantiaca sp. nov., and Robertkochia flava sp. nov., two potential quinate- and catechol-degrading bacteria isolated from tidal-flat sediments
    Jaincy N. Jayan, Young-Mi Lee, Ye-ji You, Sathiyaraj Srinivasan, Sang-Seob Lee
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Genomic insights into novel predatory myxobacteria isolated from human feces
    Joyasree Das, Shilpee Pal, Anu Negi, Shiva S. Sundharam, Amit Yadav, Srikrishna Subramanian, S. K. Sinha, Jayanta Samanta, Srinivasan Krishnamurthi, Jan Claesen
    Microbiology Spectrum.2025;[Epub]     CrossRef
  • Flavobacterium mekongense sp. nov., isolated from the Mekong River in Thailand
    Chitwadee Phithakrotchanakoon, Supattra Kitikhun, Paopit Siriarchawatana, Piyanat Charoenyingcharoen, Sukanya Jeennor, Thanyakorn Nilsakha, Amonwan Chanpet, Thanat Vorajinda, Sermsiri Mayteeworakoon, Pattaraporn Yukphan, Supawadee Ingsriswang
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Familial Reclassification Within Order Lysobacterales and Proposal of Four Novel Species
    Tengfei Ma, Haijiao Liu, Yafei Chen, Juan Liu, Chungen Piao, Han Xue, Risheng Xu, Yong Li
    Microorganisms.2025; 13(6): 1212.     CrossRef
  • Comparative genome analyses reveal insights into the marine adaptation of a novel bacterium Pontimicrobium maritimus sp. nov., isolated from seawater
    Neak Muhammad, Tien Q. Vuong, Ho Le Han, Song-Gun Kim
    Scientific Reports.2025;[Epub]     CrossRef
  • Lacticaseibacillus salsurae sp. nov. and Levilactobacillus muriae sp. nov., isolated from traditional Chinese pickle
    Si-Tong Song, Ting-Yu Wang, Xin-Yu Zhu, Chun Tao Gu
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Genome analysis reveals diverse novel psychrotolerant Mucilaginibacter species in Arctic tundra soils
    Anil Kumar, Minna K Männistö, Marika Pätsi, Lee J Kerkhof, Max M Häggblom
    ISME Communications.2025;[Epub]     CrossRef
  • Chryseobacterium cupriresistens sp. nov., a copper-resistant bacterium isolated from soil contaminated with heavy metals in Chapala Basin, Mexico
    Ivan Arroyo-Herrera, Ana Laura Reséndiz-Martínez, Brenda Román-Ponce, Joseph Guevara-Luna, Xiaoxia Zhang, Ayixon Sánchez-Reyes, Paulina Estrada-de los Santos, En Tao Wang, María Soledad Vásquez-Murrieta
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Cellvibrio chitinivorans sp. nov., a chitinolytic bacterium isolated from an intertidal mudflat
    Yanzhe Xin, Xing Qin, Honghai Zhang, Tao Dong, Xiaolu Wang, Yaru Wang, Yuan Wang, Tao Tu, Huoqing Huang, Bin Yao, Huiying Luo
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • A virulent phage vB_VpaP_R28Z infecting Vibrio parahaemolyticus with potential for therapeutic application
    Huiying Zhong, Wenjie Huang, Kate Ting Lin, Qian Zhang, Yuchan Deng, Rui Zhang, Ruijie Ma
    BMC Microbiology.2025;[Epub]     CrossRef
  • Curtobacterium phyllosphaerae sp. nov. and Curtobacterium guangdongense sp. nov., isolated from the citrus phyllosphere
    Songzhen Yang, Jiali Li, Xiang Rong, Qingying Chen, Xueying Lu, Jun Zhang, Ming-Rong Deng, Honghui Zhu, Guang-Da Feng
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Genomic insights and biotechnological potential of “Mesobacillus aurantius” strain S13: A canthaxanthin pigment-producing bacterium
    Shankar Karthik, Gurusamy Raman, Arumugam Srinivasan, Syed Gulam Dastager, Vasudev Wagh, Niraikulam Ayyadurai
    Gene Reports.2025; 40: 102287.     CrossRef
  • Ovoidimarina sediminis gen. nov., sp. nov., a novel member of the Roseobacteraceae isolated from tidal flat sediment
    Akila Kathiresan, Jaincy N. Jayan, Hee-Su Kim, Hyung-Seop Kim, Cong Li, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Characterization of Sulfitobacter sediminivivens sp. nov., A Novel Halotolerant, Nitrogen-Assimilating Bacterium from Tidal Flat Sediment
    Akila Kathiresan, Hee-Yeon Park, Hyung-Seop Kim, Cong Li, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
    Current Microbiology.2025;[Epub]     CrossRef
  • Roseovarius halophilus sp. nov., Roseovarius salis sp. nov. and Roseovarius salincola sp. nov., three novel species of the genus Roseovarius from different saline lakes
    Dildar Wu, Hao-Ran Guo, Lei Gao, Qing-Yu Xu, Tayyiba Habib, Rashidin Abdugheni, Bao-Zhu Fang, Yong-Hong Liu, Wen-Sheng Shu, Xin Li, Wen-Jun Li
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Alicycliphilus soli sp. nov., Isolated from a Plastic Film Greenhouse Soil and the Proposal for the Reclassification of Diaphorobacter limosus as Alicycliphilus limosus comb. nov.
    Xinyu Liu, Hailong Liang, Yingying Liu, Huijun Zhang, Hui Han, Bingyue Xin, Xiaomin Wu, Feng Li, Man Song, Long Zhang
    Current Microbiology.2025;[Epub]     CrossRef
  • Genome Mining of Chromobacterium Genus Reveals a Class of Nonribosomal Lipopeptides with Potent Antifungal Activity
    Qinghong Meng, Yutian Guan, Jinghai Wang, Xingyan Wang, Xiangmei Ren, Haiyan Sui, Bin Wei, Xiaoying Bian
    Journal of Agricultural and Food Chemistry.2025; 73(35): 21920.     CrossRef
  • Microbacterium xanthum sp. nov. Isolated from Seaweed, with the Reclassification of Microbacterium ihumii Yacouba et al. 2023 as a Later Heterotypic Synonym of Microbacterium tenebrionis Lee and Kim 2023
    Soon Dong Lee, Hong Lim Yang, In Seop Kim
    Current Microbiology.2025;[Epub]     CrossRef
  • Guyparkeria halopsychrophila sp. nov., a chemolithoautotrophic polyextremophile isolated from a sub-zero Arctic hypersaline spring
    Matthew W. Quinn, Olivia Blenner-Hassett, Scott Sugden, Lochlan Breckenridge, Lyle G. Whyte
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Comparative genomics of Clostridium butyricum reveals a conserved genome architecture and novel virulence-related gene clusters
    Orlagh H. Anderson, James P. J. Chong, Gavin H. Thomas
    Microbial Genomics .2025;[Epub]     CrossRef
  • Cedecea selenatireducens sp. nov. and Rahnella selenatireducens sp. nov., isolated from the seleniferous soil
    Sasa Zhang, Yi Liu, Haoyang Wang, Jing Peng, Kui Li, Ziwei Jiao, Yanbin Guo
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Methylobacterium alsaeris sp. nov. and Methylobacterium carpenticola sp. nov., isolated from a car air conditioning system
    Jung Pyo Yoon, Tae Hun Kim, So Yoon Park, Ki Young Yoon, Hyung Min Kim
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Emerging probiotics: future therapeutics for human gut health
    Sylvia H Duncan, Carlos Sabater
    FEMS Microbiology Ecology.2025;[Epub]     CrossRef
  • Taxonomic Characterization and Genome Analysis of Polaribacter gochangensis sp. nov., Isolated From a Tidal Clam Farm
    Akila Kathiresan, Hyung-Seop Kim, Ke Dong, Sathiyaraj Srinivasan, Sang-Seob Lee
    Current Microbiology.2025;[Epub]     CrossRef
  • Integrated genome mining and molecular networking uncover the biosynthetic potential of a novel mangrove-derived strain Streptomyces sp. B1866
    Liyuan Jiang, Wenjin Hu, Jinling Qin, Baorui Teng, Siwei Chen, Dan Zhang, Hui Lei, XinLi Pan
    BMC Genomics.2025;[Epub]     CrossRef
  • Efficient degradation of cephalexin by newly isolated strain Brevundimonas sp. CEF1 and its biodegradation mechanisms
    Boxiang Kou, Yujia Wang, Yunyun Dong, Tiantian Wang, Zexun Wang, Junheng Wang, Dan Ma, Sijun Dong
    Chemical Engineering Journal.2025; 522: 167124.     CrossRef
  • Pseudarthrobacter raffinosi sp. nov. and Pseudarthrobacter cellobiosi sp. nov. Two Heavy-Metal-Tolerant and Psychrotolerant Bacteria Isolated from Glaciers
    Lei-Lei Yang, Yu-Hua Xin, Qing Liu
    Current Microbiology.2025;[Epub]     CrossRef
  • Description of Silvibacterium acidisoli sp. nov. and Edaphobacter albus sp. nov. and a Proposal for Taxonomic Rearrangements Within the Family Acidobacteriaceae Based on Comparative Genome Analysis
    Lihong Qiu, Lixiang Cao
    Taxonomy.2025; 5(3): 40.     CrossRef
  • Variovorax atrisoli sp. nov., a novel species isolated from black soil applied with herbicide atrazine in Northeast China
    Jianheng Wang, Yuzhu Chen, Yuxi Yang, Yuxin Fan, Charity Offei, Jing Bai, Yanjie Qi, Yucheng Wu, Dongfei Han
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Agromyces endophyticus sp. nov., isolated from endosphere of garlic
    Seunghwan Kim, Jun Heo, Hyorim Choi, Yunhee Choi, Hang-Yeon Weon, Soon-Wo Kwon, Hanako Naito, Tomomi Yamada, Moriyuki Hamada, Yiseul Kim
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Augmenting microbial phylogenomic signal with tailored marker gene sets
    Henry Secaira-Morocho, Xiaofang Jiang, Qiyun Zhu
    Nature Communications.2025;[Epub]     CrossRef
  • Potential application of MALDI-TOF MS to identify Streptococcus parapneumoniae, an emerging pathogen previously misidentified as Streptococcus pneumoniae
    Yan Zhao, Yuanchao Ma, Hwei Huih Lee, Wing Ho Li, Antonio Hung-Yee Ngan, Jonathan Hon-Kwan Chen, Simon Yung-Chun So, Vincent Chi-Chung Cheng, Kwok-Yung Yuen, Man Lung Yeung, Jade Lee-Lee Teng
    International Journal of Infectious Diseases.2025; 160: 108042.     CrossRef
  • Apilactobacillus intestinapis sp. nov., isolated from the honeybee
    Li-Jyun Tsai, Po-Cheng Chen, Wei-Tsu Lan, Yun-Shien Lee, Yu-Chung Chang, Hui-Chung Wu, Chong-You Lin, Yi-Hsien Liu, Jhih-Ti Teng, Yi-Sheng Chen
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Phylogenomic insights support the merger of the genera Mameliella and Maliponia into the genus Antarctobacter
    Xiaokun Xu, Xiuzhen Li, Qingjie Xue, Ang Liu
    BMC Genomics.2025;[Epub]     CrossRef
  • Hymenobacter cheonanensis sp. nov., and Hymenobacter convexus sp. nov. isolated from the construction site
    Ji-yun Son, Sathiyaraj Srinivasan
    Antonie van Leeuwenhoek.2025;[Epub]     CrossRef
  • Comparative genomics of ‘Xanthomonas cannabis’ reveals an emerging, diverse pathogen
    Daniel J. E. McKnight, Lauren Clackson, Johanna Wong-Bajracharya, John Webster, Paul Worden, Fridtjof Snijders, Efenaide B. Okoh, Steven P. Djordjevic, Toni A. Chapman, Daniel R. Bogema
    Microbial Genomics .2025;[Epub]     CrossRef
  • Isolation of diverse Undibacterium-related strains from alpine lakes and re-examining the taxonomic status of this genus
    Hui-Bin Lu, Ling-Yang Kong, Li Chen, Guang-Jie Chen, Jian-Jun Wang
    Systematic and Applied Microbiology.2025; 48(6): 126661.     CrossRef
  • Genome-based classification of Halonovum salinarum gen. nov., sp. nov., and Halonovum rutilum sp. nov., two novel halophilic archaea isolated from a solar saltern
    Chi Young Hwang, Eui-Sang Cho, Ki-Eun Lee, Eun-Young Lee, Myung-Ji Seo
    BMC Microbiology.2025;[Epub]     CrossRef
  • Enterococcus infantis sp. nov., isolated from the faeces of an infant with atopic dermatitis
    Chin-Kan Chan, Li-Jyun Tsai, Misa Otoguro, Fujitoshi Yanagida, Yun-Shien Lee, Hui-Chung Wu, Yu-Chung Chang, Yi-Sheng Chen
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Reclassification of Rhizobium panacihumi as Endobacterium panacihumi comb. nov. and emended description of the genus Endobacterium
    Esther Menéndez, José David Flores-Félix, Encarna Velázquez, Alvaro Peix
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Description of Sediminicola litoralis sp. nov. isolated from tidal flat sediment and functional genomic analysis of the genus Sediminicola
    Yang Liu, Juan Du, Xiong Xiong, Xuan Lu, Haofang Wu, Shuai Meng, Liangqiu Li, Ming-Rong Deng, Honghui Zhu
    BMC Microbiology.2025;[Epub]     CrossRef
  • Description of Fulverythrobacter ferritrahens gen. nov., sp. nov., a Siderophore-Producing Bacterium Isolated from Poultry Manure Compost and Reclassification of Caenibius fulvus and Altererythrobacter segetis as Fulverythrobacter fulvus Comb. nov. and Cr
    Shih-Yao Lin, Asif Hameed, Tzu-Yu Lin, Chiu-Chung Young
    Current Microbiology.2025;[Epub]     CrossRef
  • Identification of an antifungal lipopeptide from Bacillus amyloliquefaciens HAU3 inhibiting the growth of Fusarium graminearum using preparative chromatography and 2D-NMR
    Yuxuan Liu, Ziyao Shi, Xianhua Wan, Ruolin Wang, Yang Liu, Yujie Gong, Donghua Li, Yanhua Zhang, Hong Li, Guoxi Li, Xiaojun Liu, Xiangli Sun, Xiangtao Kang, Yanbin Wang, Quan Zeng
    Microbiology Spectrum.2025;[Epub]     CrossRef
  • Nocardioides lacus sp. nov., a novel member of the Actinomycetota isolated from a freshwater pond
    Young Ho Nam, Ji Young Jung, Hye Kyeong Kang, Byung-Gon Ryu, Ye-Ji Hwang, Tae Jin Kim, Mi-Hwa Lee, Hyun Mi Jin, Kook-Il Han
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Estimated timeline for the evolution of symbiotic nitrogen fixing Paraburkholderia
    Lazarus Mavima, Emma T. Steenkamp, Chrizelle W. Beukes, Marike Palmer, Sofie E. De Meyer, Euan K. James, Stephanus N. Venter, Martin P.A. Coetzee
    Molecular Phylogenetics and Evolution.2025; 213: 108447.     CrossRef
  • Actinomadura opuntiae Sp. Nov., Isolated from a Soil of Cactus and the Reclassification of Actinomadura namibiensis Wink Et Al. 2003 as a Later Heterotypic Synonym of Actinomadura kijaniata Horan and Brodsky 1982
    Soon Dong Lee, Hong Lim Yang, In Seop Kim
    Current Microbiology.2025;[Epub]     CrossRef
  • Comparative Genomics and Phylogenomics of Novel Radiation-Resistant Bacterium Paracoccus qomolangmaensis sp. nov. S3-43T, Showing Pyrethroid Degradation
    Yang Liu, Tuo Chen, Yiyang Zhang, Lu Zhang, Xiaowen Cui, Tian Cheng, Guangxiu Liu, Wei Zhang, Gaosen Zhang
    Microorganisms.2025; 13(11): 2441.     CrossRef
  • Nocardioides epinepheli sp. nov., an Epsilon-Poly-l-lysine-Producing Actinobacterium Isolated from the Fish Intestine
    Jiawei Li, Aolin Zhao, Quan Yang, Haifei Liu, Lifang Yang, Ying Huang, Shujing Wu, Mingguo Jiang
    Current Microbiology.2025;[Epub]     CrossRef
  • Paired genomic and metabolomic analysis reveals the secondary metabolome potential of Cystobacter
    Wen-Chao Yu, Shu-Qi Ge, Jia-Lian Huang, Bin Wei, Qihao Wu, Hong Wang, Yanlei Yu
    Journal of Applied Microbiology.2025;[Epub]     CrossRef
  • Strain-specific qPCR assay to track the vaginal colonization of the probiotic Lacticaseibacillus rhamnosus TOM 22.8 strain orally administered
    Amanda Vaccalluzzo, Alessandra Pino, Georgiana Bosco, Cinzia Caggia, Cinzia Lucia Randazzo
    BMC Microbiology.2025;[Epub]     CrossRef
  • Longitudinal gut microbiota tracking reveals the dynamics of horizontal gene transfer
    Haoran Peng, Sergio Andreu-Sanchez, Angel J. Ruiz-Moreno, Asier Fernández-Pato, Jiafei Wu, Ranko Gacesa, Alexandra Zhernakova, Daoming Wang, Jingyuan Fu
    Nature Communications.2025;[Epub]     CrossRef
  • Streptococcus atopica sp. nov., Isolated from the Feces of a Toddler with Atopic Dermatitis
    Chin-Kan Chan, Hui-Shan Wu, Li-Jyun Tsai, Yun-Shien Lee, Yu-Chung Chang, Hui-Chung Wu, Yi-Sheng Chen
    Current Microbiology.2025;[Epub]     CrossRef
  • Caballeronia eucalypticola sp. nov., isolated from the xylem tissues of eucalyptus
    Wenkai Xu, Yong Li, Han Xue, Huiping Li
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Acid tolerance and metabolic potential of comammox and nitrite-oxidizing Nitrospira enriched from soil
    Yu Takahashi, Hirotsugu Fujitani, Itsuki Taniguchi, Yasuhiro Gotoh, Yuta Shimada, Shuto Ikeda, Tetsuya Hayashi, Kanako Tago, Masahito Hayatsu, Satoshi Tsuneda
    ISME Communications.2025;[Epub]     CrossRef
  • Prevalence, diversity, and parasitism of tailed prophages in Vibrio harveyi
    Ruijie Ma, Huiying Zhong, Rui Zhang, Michael J. Imperiale
    mSphere.2025;[Epub]     CrossRef
  • Pantoea phosphatilytica sp. nov. and Pantoea phyllosphaerae sp. nov., two phosphate-solubilizing and siderophore-producing bacteria isolated from citrus phyllosphere
    Songzhen Yang, Jiali Li, Jun Zhang, Haoxiang Luo, Honghong Dong, Ming-Rong Deng, Honghui Zhu, Guang-Da Feng
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Description of high-altitude, cold-adaptive, metabolically versatile Dyadobacter aurulentus sp. nov. isolated from Western Himalayan farmland soils
    Amit Yadav, Kiran Kirdat, Vipool Thorat, Ngangyola Tuikhar, Kirti Chundawat, Tushar Lodha, Bhavesh Tiwarekar, Umera Patwekar, Malad Mubarak, Shuchi Shastri, Saurabh Kumar, Yogesh Shouche, Reeta Goel, Rup Lal
    Microbiology Spectrum.2025;[Epub]     CrossRef
  • First Report of Bacterial Fruit Rot of Banana Caused by Dickeya fangzhongdai in China
    X. T. Liu, C. Ma, Y. M. Zhu, E. X. Zhou
    Plant Disease.2025; 109(12): 2583.     CrossRef
  • Flavobacterium movens sp. nov. and Flavobacterium mesophilum sp. nov., two novel bacteria isolated from rhizosphere soil of Litchi (Litchi chinensis Sonn.)
    Yijie Dong, Xing Wang, Yang Liu, Guang-Da Feng, Qing Yao, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Metagenomic Insights Into the Ecology, Taxonomy and Metabolic Capabilities of ‘Candidatus Darwinibacteriales’ Ord. Nov. (Formerly MBA03), a Potential Key Player in Anaerobic Digestion
    Roser Puchol‐Royo, Javier Pascual, Asier Ortega‐Legarreta, Pascal Otto, Jeroen Tideman, Sjoerd‐Jan de Vries, Christian Abendroth, Kristie Tanner, Manuel Porcar, Adriel Latorre‐Perez
    Microbial Biotechnology.2025;[Epub]     CrossRef
  • Microbacterium insectihabitans sp. nov., Isolated from Larvae of Allomyrina dichotoma
    Soon Dong Lee, Hong Lim Yang, In Seop Kim
    Current Microbiology.2025;[Epub]     CrossRef
  • Foliimonas ilicis gen. nov., sp. nov., a carbon monoxide-oxidizing bacterium belonging to a novel genus of the family Phyllobacteriaceae isolated from leaves of Ilex aquifolium
    Sinchan Banerjee, András Táncsics, Zeqin Wu, Tudor Stafioiu, Jiacheng Gao, Erika Tóth, Erzsébet Baka, Gary Bending, Hendrik Schäfer
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Diverse biofilm-forming Sphingomonadaceae represent twelve novel species isolated from glaciers on the Tibetan Plateau
    Dou Han, Yu-Hua Xin, Qing Liu
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Niabella insulamsoli sp. nov., Isolated From Soil and Showing Potential Cosmetic Functions with Flexirubin Extract
    Nhi Thi Ai Nguyen, Jaisoo Kim
    Current Microbiology.2025;[Epub]     CrossRef
  • Mucilaginibacter florum sp. nov., isolated from the flower of Coreopsis grandiflora and Mucilaginibacter oryzagri sp. nov., isolated from rice paddy soil in Korea
    Parthiban Subramanian, Jun Heo, Daseul Lee, Seunghwan Kim, Hyorim Choi, Yunhee Choi, Yiseul Kim
    Journal of Microbiology.2025; 63(12): e2509014.     CrossRef
  • N2-Fixing Fontibacillus forbon sp. nov., a Novel Species from the Plant Rhizosphere
    Rui Hu, Yimin Shang, Weilong Zhang, Chengao Song, Renzong Wang, Sanfeng Chen
    Microorganisms.2025; 14(1): 49.     CrossRef
  • Nocardioides secundeburneus sp. nov. and Gordonia aurantiaca sp. nov., isolated from soil
    Jisu Kim, Inhyup Kim, Sunho Park, Haejin Woo, Hyunji Lee, Subin Yook, Jung-Hoon Yoon, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Genome-based reclassification of Fontibacillus solani Ramirez-Bahena et al. 2015 as a later heterotypic synonym of Fontibacillus panacisegetis Lee et al. 2011
    Aleyna Nalcaoglu Senocak, Kadriye Inan Bektas, Sabriye Canakci, Ali Osman Belduz
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Croceiramulus getboli gen. nov., sp. nov., a marine bacterium isolated from the tidal flat
    Yeonjae Yoo, Sang Hyun Lee, Dae Young Kwon, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, Jae-Jin Kim
    International Journal of Systematic and Evolutionary Microbiology .2025;[Epub]     CrossRef
  • Aquibaculum arenosum gen. nov., sp. nov., a novel member of the family Rhodovibrionaceae, isolated from sea sand
    Soyeon Ahn, David Hyung-Sun Choi, Veeraya Weerawongwiwat, Jong-Hwa Kim, Ampaitip Sukhoom, Wonyong Kim
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • The analysis of complete genome sequence and comparative genomics of Vibrio parahaemolyticus LF1113 in Hainan
    Linlin Hu, Aiyun Meng, Zhigang Tu, Shuwen Jia, Qingming Liu, Fuxiao Chen
    Infection, Genetics and Evolution.2024; 119: 105574.     CrossRef
  • Organic matter degradation in the deep, sulfidic waters of the Black Sea: insights into the ecophysiology of novel anaerobic bacteria
    Subhash Yadav, Michel Koenen, Nicole J. Bale, Wietse Reitsma, Julia C. Engelmann, Kremena Stefanova, Jaap S. Sinninghe Damsté, Laura Villanueva
    Microbiome.2024;[Epub]     CrossRef
  • Extremely oligotrophic and complex-carbon-degrading microaerobic bacteria from Arabian Sea oxygen minimum zone sediments
    Jagannath Sarkar, Mahamadul Mondal, Sabyasachi Bhattacharya, Subhajit Dutta, Sumit Chatterjee, Nibendu Mondal, Saran N, Aditya Peketi, Aninda Mazumdar, Wriddhiman Ghosh
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Brooklawnia propionicigenes sp. nov., a facultatively anaerobic, propionate-producing bacterium isolated from a methanogenic reactor treating waste from cattle farms
    Yasumitsu Akita, Atsuko Ueki, Akio Tonouchi, Yoshimichi Sugawara, Sachi Honma, Nobuo Kaku, Katsuji Ueki
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Reclassification of Aestuariicella albida as Pseudomaricurvus albidus comb. nov. and Aestuariicella hydrocarbonica as Pseudomaricurvus hydrocarbonicus comb. nov. Based on Comparative Genomics and Molecular Synapomorphies
    Jake Adolf V. Montecillo, Merell P. Billacura, Maria Distressa G. Billacura
    Current Microbiology.2024;[Epub]     CrossRef
  • Advancements in prokaryotic systematics and the role of Bergey's International Society for Microbial Systematicsin addressing challenges in the meta-data era
    Jian-Yu Jiao, Rashidin Abdugheni, Dao-Feng Zhang, Iftikhar Ahmed, Mukhtiar Ali, Maria Chuvochina, Svetlana N Dedysh, Xiuzhu Dong, Markus Göker, Brian P Hedlund, Philip Hugenholtz, Kamlesh Jangid, Shuang-Jiang Liu, Edward R B Moore, Manik Prabhu Narsing Ra
    National Science Review.2024;[Epub]     CrossRef
  • Terrirubrum flagellatum gen. nov., sp. nov. of Terrirubraceae fam. nov. and Lichenibacterium dinghuense sp. nov. from forest soil and proposal of Rhodoblastaceae fam. nov.
    Xiu-yin Guo, Qiu-mei Zhang, Jia-cheng Fu, Li-hong Qiu
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Shewanella goraebulensis sp. nov., isolated from sea water
    Yong-Suk Lee, Hae-Rin Jeong, Eun-Jung Hwang, Maheshkumar Prakash Patil, Yong Bae Seo, Gun-Do Kim
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Acidovorax benzenivorans sp. nov., a novel aromatic hydrocarbon-degrading bacterium isolated from a xylene-degrading enrichment culture
    Anna Bedics, András Táncsics, Sinchan Banerjee, Erika Tóth, Péter Harkai, Gerda Georgina Gottschall, Károly Bóka, Balázs Kriszt
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Halosquirtibacter laminarini gen. nov., sp. nov. and Halosquirtibacter xylanolyticus sp. nov., marine anaerobic laminarin and xylan degraders in the phylum Bacteroidota
    Tra T. H. Nguyen, Tien Q. Vuong, Ho Le Han, Song-Gun Kim
    Scientific Reports.2024;[Epub]     CrossRef
  • Improving plant salt tolerance through Algoriphagus halophytocola sp. nov., isolated from the halophyte Salicornia europaea
    Yuxin Peng, Dong Hyun Cho, Zalfa Humaira, Yu Lim Park, Ki Hyun Kim, Cha Young Kim, Jiyoung Lee
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Microbacterium abyssi sp. nov. and Microbacterium limosum sp. nov., two new species of the genus Microbacterium, isolated from deep-sea sediment samples
    Yihan Ding, Xiaorui Ding, Yiting Chen, Shiping Wei, Gaiyun Zhang
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Terrihabitans rhizophilus sp. nov., isolated from the rhizosphere soil of plant in temperate semi-arid steppe
    Runze Bao, Huiling Guo, Yungang Liang, Kai Tang, Fuying Feng, Jianyu Meng
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Fictibacillus fluitans sp. nov., isolated from freshwater pond
    Amit Yadav, Akanksha Maurya, Yash Bhavsar, Ruchi Teware, Agrima Bhatt, Elaine DaCosta, Vipool Thorat, Kiran Kirdat, Syed G. Dastager
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Microbial acidification by N, S, Fe and Mn oxidation as a key mechanism for deterioration of subsea tunnel sprayed concrete
    Sabina Karačić, Carolina Suarez, Per Hagelia, Frank Persson, Oskar Modin, Paula Dalcin Martins, Britt-Marie Wilén
    Scientific Reports.2024;[Epub]     CrossRef
  • Xanthomonas rydalmerensis sp. nov., a non-pathogenic member of Group 1 Xanthomonas
    Daniel J. E. McKnight, Johanna Wong-Bajracharya, Efenaide B. Okoh, Fridtjof Snijders, Fiona Lidbetter, John Webster, Mathew Haughton, Aaron E. Darling, Steven P. Djordjevic, Daniel R. Bogema, Toni A. Chapman
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Adaptation mechanisms of Alcanivorax facilitating its predominance in marine environments
    Zhen Chen, Shizheng Xiang, Yao Lu, Qiliang Lai, Chunming Dong, Jianyang Li, Guizhen Li, Zongze Shao
    Frontiers in Marine Science.2024;[Epub]     CrossRef
  • Genomic Functional Analysis of Novel Radiation-Resistant Species of Knollia sp. nov. S7-12T from the North Slope of Mount Everest
    Xinyue Wang, Yang Liu, Zhiyuan Chen, Kexin Wang, Guangxiu Liu, Tuo Chen, Binglin Zhang
    Microorganisms.2024; 12(9): 1748.     CrossRef
  • Massilia litorea sp. nov., Marinobacter salinisoli sp. nov. and Rhodobacter xanthinilyticus sp. nov., isolated from coastal environments
    Banseok Lee, Donghoon Shin, Juseong Kim, Su-Kyoung Shin, Hana Yi, Min-gyung Baek
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Unveiling unique microbial nitrogen cycling and nitrification driver in coastal Antarctica
    Ping Han, Xiufeng Tang, Hanna Koch, Xiyang Dong, Lijun Hou, Danhe Wang, Qian Zhao, Zhe Li, Min Liu, Sebastian Lücker, Guitao Shi
    Nature Communications.2024;[Epub]     CrossRef
  • Auxin production and plant growth promotion by Microbacterium albopurpureum sp. nov. from the rhizoplane of leafless Chiloschista parishii Seidenf. orchid
    Elena A. Tsavkelova, Elena A. Volynchikova, Natalia V. Potekhina, Konstantin V. Lavrov, Alexander N. Avtukh
    Frontiers in Plant Science.2024;[Epub]     CrossRef
  • Paenibacillus suaedae sp. nov. and Paenibacillus violae sp. nov., isolated from the roots of Suaeda japonica Makino and Viola mandshurica W. Becker with plant growth-promoting potential
    Inhyup Kim, Sunho Park, Yonghee Jung, Haejin Woo, Hyunji Lee, Subin Yook, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Vagococcus jeotgali sp. nov., isolated from cutlassfish jeotgal, a traditional Korean fermented seafood
    Sung-Hong Joe, Ah-In Yang, Bora Kim, Hae-In Joe, Yeongjin Hong, Na-Ri Shin
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Sphingomonas rustica sp. nov. and Sphingomonas agrestis sp. nov., novel carotenoid-producing bacterial species isolated from farm soil
    Hyunji Lee, Inhyup Kim, Sunho Park, Haejin Woo, Subin Yook, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Lapidilactobacillus salsurivasis sp. nov., Secundilactobacillus muriivasis sp. nov., and Streptococcus parasalivarius sp. nov., isolated from Traditional Chinese Pickle
    Ting-Yu Wang, Chun Yan Li, Hao Wang, Chun Tao Gu
    Current Microbiology.2024;[Epub]     CrossRef
  • Unprecedented N 2 O production by nitrate-ammonifying Geobacteraceae with distinctive N 2 O isotopocule signatures
    Zhenxing Xu, Shohei Hattori, Yoko Masuda, Sakae Toyoda, Keisuke Koba, Pei Yu, Naohiro Yoshida, Zong-Jun Du, Keishi Senoo, Derek R. Lovley, Daniel R Bond
    mBio.2024;[Epub]     CrossRef
  • Pseudomonas hefeiensis sp. nov., isolated from the rhizosphere of multiple cash crops in China
    Kaiji Liao, Qiang Li, Jun-Zhou Li, Hai-Lei Wei
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Speluncibacter jeojiensis gen. nov. sp. nov., a novel bacterium of the order Mycobacteriales isolated from a cave and a proposal of Speluncibacteraceae fam. nov.
    Soon Dong Lee, Hong-Lim Yang, Jong-Heon Han, In Seop Kim
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • A rare urinary tract infection of multidrug-resistant Chryseobacterium urinae sp. nov. isolated from a diabetic, non-catheterized patient
    Agrima Bhatt, Sujata Pujari, Shailesh Mantri, Kiran Kirdat, Lucky Thakkar, Reshma Poojary, Sunil Kuyare, Kritika Patil, Amit Yadav
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Roseihalotalea indica gen. nov., sp. nov., a halophilic Bacteroidetes from mesopelagic Southwest Indian Ocean with higher carbohydrate metabolic potential
    Beihan Chen, Mingzhe Zhang, Dan Lin, Jianing Ye, Kai Tang
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Phytopathogenic Curtobacterium flaccumfaciens Strains Circulating on Leguminous Plants, Alternative Hosts and Weeds in Russia
    Anna D. Tokmakova, Rashit I. Tarakanov, Anna A. Lukianova, Peter V. Evseev, Lyubov V. Dorofeeva, Alexander N. Ignatov, Fevzi S.-U. Dzhalilov, Sergei A. Subbotin, Konstantin A. Miroshnikov
    Plants.2024; 13(5): 667.     CrossRef
  • Genomic and functional insights of a mucin foraging Rhodopirellula halodulae sp. nov.
    PK Sreya, Atham Hari Naga Papa Rao, Gandham Suresh, Chintalapati Sasikala, Chintalapati Venkata Ramana
    Systematic and Applied Microbiology.2024; 47(4): 126523.     CrossRef
  • Dyadobacter helix sp. nov. and Dyadobacter linearis sp. nov., from drinking water
    Teresa Lucena, María J. Pujalte, David R. Arahal
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Preliminary comparative genomics analysis among Corynebacterium kroppenstedtii complex necessitates a reassessment of precise species associated with mastitis
    Ying Huang, Ming-Hui Song, Shun-Guang Li, Hong- Yu Shen, Ping-Hua Qu, Dao-Feng Zhang
    Journal of Applied Microbiology.2024;[Epub]     CrossRef
  • Ruicaihuangia caeni gen. nov., sp. nov., a novel taxon within the family Microbacteriaceae isolated from sludge
    Le Liu, Keke Geng, Yu Lv, Qi Zhang, Gang Chen, Dan Cheng, Jiahui Shao, Jian He, Qirong Shen
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Isolation and characterization of two new species, Hymenobacter mellowenesis sp. nov. and Hymenobacter aranciens sp. nov., from soil
    Seonjae Kim, Sathiyaraj Srinivasan, Myung Kyum Kim
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Characteristics of a lipase ArEstA with lytic activity against drug-resistant pathogen from a novel myxobacterium, Archangium lipolyticum sp. nov.
    Yang Zhou, Haixin Chen, Hongxia Jiang, Qing Yao, Honghui Zhu
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Lineage-specific evolution of Aquibium , a close relative of Mesorhizobium , during habitat adaptation
    Minkyung Kim, Wonjae Kim, Yerim Park, Jaejoon Jung, Woojun Park, Arpita Bose
    Applied and Environmental Microbiology.2024;[Epub]     CrossRef
  • Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host
    Zaki Saati-Santamaría, José David Flores-Félix, José M. Igual, Encarna Velázquez, Paula García-Fraile, Eustoquio Martínez-Molina
    Journal of Molecular Evolution.2024; 92(2): 169.     CrossRef
  • Novel microbiota Mesosutterella faecium sp. nov. has a protective effect against inflammatory bowel disease
    Seung Yeob Yu, Byeong Seob Oh, Seoung Woo Ryu, Jeong Eun Bak, Eun Seo Heo, Jeong Chan Moon, Jae-Ho Jeong, Ju Huck Lee
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Isoptericola haloaureus sp. nov., a dimorphic actinobacterium isolated from mangrove sediments of southeast India, implicating biosaline agricultural significance through nitrogen fixation and salt tolerance genes
    Munisamy Prathaban, Ragothaman Prathiviraj, Mythili Ravichandran, Sharmila Devi Natarajan, Murugesan Sobanaa, S. Hari Krishna Kumar, Varadharaju Chandrasekar, Joseph Selvin
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Isolation and Characterization of Paracoccus maritimus sp. nov., from Intertidal Sediment
    Libo Yu, Guangxin Xu, Shiping Wei, Qiliang Lai, Zongze Shao
    Current Microbiology.2024;[Epub]     CrossRef
  • Gilvirhabdus luticola gen. nov., sp. nov., a mesophilic and halophilic bacterium isolated from tidal flat sediment
    Jaincy N. Jayan, Hee-Su Kim, Sathiyaraj Srinivasan, Hyung-Seop Kim, Jae-Yon Yu, Sang-Seob Lee
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Leuconostoc koreense sp. nov., isolated from kimchi, a fermented vegetable
    Min Ji Lee, Jeong Ui Yun, Sohee Nam, Mi-Ja Jung, Yeon Bee Kim, Yujin Kim, Jisu Lee, Dae Gyu Choi, Dae Seung Lee, Seong Woon Roh, Tae Woong Whon, Che Ok Jeon, Se Hee Lee
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Aerobic anoxygenic phototrophs play important roles in nutrient cycling within cyanobacterial Microcystis bloom microbiomes
    Haiyuan Cai, Christopher J. McLimans, Helong Jiang, Feng Chen, Lee R. Krumholz, K. David Hambright
    Microbiome.2024;[Epub]     CrossRef
  • Arthrobacter horti sp. nov., isolated from mountain soil
    Mingyeong Park, Jaisoo Kim
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Sphingomicrobium clamense sp. nov., Isolated from Sediment of Clam Island Beach in China
    Xing Li, Lulu Mu, Yanfeng Zhang, Zimu Zhu, Yazhong Xiao, Zemin Fang
    Current Microbiology.2024;[Epub]     CrossRef
  • Pseudomonas fortuita sp. nov., isolated from the endosphere of a wild yam
    Aurelien Carlier, Marine Beaumel, Sandra Moreau, Tessa Acar, Thibault Géry Sana, Margo Cnockaert, Peter Vandamme
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Azospirillum isscasi sp. nov., a bacterium isolated from rhizosphere soil of rice
    Hui Wang, Haiyang Jin, Zhe Chen, Wenjun Li, Jing Ma, Tianlong Hu, Qi Liu, Yanhui Zhang, Xingwu Lin, Zubin Xie
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Genome Mining Analysis Uncovers the Previously Unknown Biosynthetic Capacity for Secondary Metabolites in Verrucomicrobia
    Xue Di, Peng Li, Jingxuan Wang, Vincent Nowak, Shuai Zhi, Meiling Jin, Liwei Liu, Shan He
    Marine Biotechnology.2024; 26(6): 1324.     CrossRef
  • Metabolic and phylogenetic diversity in the phylum Nitrospinota revealed by comparative genome analyses
    Linnea F M Kop, Hanna Koch, Mike S M Jetten, Holger Daims, Sebastian Lücker
    ISME Communications.2024;[Epub]     CrossRef
  • Key bacteria decomposing animal and plant detritus in deep sea revealed via long-term in situ incubation in different oceanic areas
    Jianyang Li, Chunming Dong, Shizheng Xiang, Huiyang Wei, Qiliang Lai, Guangshan Wei, Linfeng Gong, Zhaobin Huang, Donghui Zhou, Guangyi Wang, Zongze Shao
    ISME Communications.2024;[Epub]     CrossRef
  • Xiashengella succiniciproducens gen. nov., sp. nov., a succinate-producing bacterium isolated from an anaerobic digestion tank in the family Marinilabiliaceae of the order Bacteroidales
    Hao-Jie Huang, Xi Zhang, Xin-Wei Sun, Biao Chen, Xiu-Tong Li, Nan Zhou, Rashidin Abdugheni, Qiu-Yin Cheng, Tie-Jun Zhang, Yao Liu, Yong Jiang, Ye Deng, Shuang-Jiang Liu, Cheng-Ying Jiang
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Comparative genome analysis of the genus Marivirga and proposal of two novel marine species: Marivirga arenosa sp. nov., and Marivirga salinae sp. nov.
    Neak Muhammad, Forbes Avila, Song-Gun Kim
    BMC Microbiology.2024;[Epub]     CrossRef
  • Lacticaseibacillus pabuli sp. nov., isolated from fermented cattle feed
    Hyorim Choi, Yiseul Kim, Seunghwan Kim, Soon-Wo Kwon, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Hanako Naito, Tomomi Yamada, Moriyuki Hamada, Jun Heo
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Resolving the metabolism of monolignols and other lignin-related aromatic compounds in Xanthomonas citri
    Damaris B. Martim, Anna J. V. C. Brilhante, Augusto R. Lima, Douglas A. A. Paixão, Joaquim Martins-Junior, Fernanda M. Kashiwagi, Lucia D. Wolf, Mariany S. Costa, Fabrícia F. Menezes, Rafaela Prata, Matheus C. Gazolla, Juliana A. Aricetti, Gabriela F. Per
    Nature Communications.2024;[Epub]     CrossRef
  • Pedobacter rhodius sp. nov. and Pedobacter punctiformis sp. nov., isolated from soil
    Haejin Woo, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Yonghee Jung, Taegun Seo
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • A comparative genomic study of a hydrocarbon-degrading marine bacterial consortium
    Jorge Rojas-Vargas, Eria A. Rebollar, Alejandro Sanchez-Flores, Liliana Pardo-López, Pankaj Kumar Arora
    PLOS ONE.2024; 19(8): e0303363.     CrossRef
  • Gemmobacter denitrificans sp. nov., a denitrifying bacterium, isolated from pond water for Litopenaeus vannamei
    Mingxia Zhang, Yulian Zhang, Fan Yang, Qing Yao, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Janibacter alittae sp. nov., an actinobacterium isolated from the gut of marine sandworm (Alitta virens)
    Bora Kim, Min Ok Jun, Ah-In Yang, Sung-Hong Joe, Hae-In Joe, Hojun Sung, Ki Hyun Kim, Hyun Jung Kim, Na-Ri Shin
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Sporosarcina jeotgali sp. nov., Sporosarcina oncorhynchi sp. nov., and Sporosarcina trichiuri sp. nov., Isolated from Jeotgal, a Traditional Korean Fermented Seafood
    Ah-In Yang, Bora Kim, Sung-Hong Joe, Hae-In Joe, Hanna Choe, Ki Hyun Kim, Min Ok Jun, Na-Ri Shin
    Journal of Microbiology.2024; 62(4): 285.     CrossRef
  • Characterization of Bacillus velezensis TJS119 and its biocontrol potential against insect pathogens
    Kook-Il Han, Young Ho Nam, Byung Su Hwang, Jeong Tae Kim, Jum Oc Jung, Eunsun Kim, Mi-Hwa Lee
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Altererythrobacter litoralis sp. nov., a New Carotenoid-Producing Member of the Family Erythrobacteraceae, Isolated from a Tidal Flat Sediment
    Yang Liu, Tao Pei, Juan Du, Mingxia Zhang, Honghui Zhu
    Current Microbiology.2024;[Epub]     CrossRef
  • Pengzhenrongella frigida sp. nov., isolated from a glacier
    Qing Liu, Lei-Lei Yang, Yu-Hua Xin
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Isolation and identification of uric acid-dependent Aciduricibacillus chroicocephali gen. nov., sp. nov. from seagull feces and implications for hyperuricemia treatment
    Wenxuan Liu, Fulong Nan, Fengjun Liu, Xiaoli Yang, Zonghui Li, Shasha Jiang, Xianjuan Zhang, Jun Li, Meng Yu, Yunyang Wang, Bin Wang, Vincent B. Young
    mSphere.2024;[Epub]     CrossRef
  • Ciceribacter sichuanensis sp. nov., a plant growth promoting rhizobacterium isolated from root nodules of soybean in Sichuan, China
    Yanqin Zhang, Yuanxue Chen, Petri Penttinen, Xing Wang, Ying Quan, Licheng Wen, Miao Yang, Xiaoping Zhang, Qiang Chen, Lingzi Zhang, Junjie Zhang, Xiaoxia Zhang, Kaiwei Xu
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Clostridium lapidicellarium sp. nov. and Clostridium moutaii sp. nov., two species isolated from fermentation cellar-producing sauce-flavour Chinese baijiu
    Fan Yang, Hui Wang, Liang-Qiang Chen, Nan Zhou, Jian-Jun Lu, Xiu-Xin Pu, Bo Wan, Li Wang, Shuang-Jiang Liu
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Paracoccus actinidiae sp.nov., a novel bacterium isolated from kiwi tree rhizosphere soil
    Chenqi Xu, Han Peng, He Li, Xinran Xie, Siwei Chen, Junhao Dai, Hong Ren
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • The Type Strain of Bifidobacterium indicum Scardovi and Trovatelli 1969 (Approved Lists 1980) is ATCC 25912, not DSM 20214, and Rejection to Reclassify Bifidobacterium coryneforme as Bifidobacterium indicum
    Cheng-Shan Jiang, Chun Yan Li, Chun Tao Gu
    Current Microbiology.2024;[Epub]     CrossRef
  • Actinomadura monticuli sp. nov., isolated from Darangshi Oreum (a volcanic cone), and the reclassification of Actinomadura glauciflava Lu et al. 2003 as a later heterotypic synonym of Actinomadura luteofluorescens (Shinobu 1962) Preobrazhensk
    Soon Dong Lee, Hong Lim Yang, In Seop Kim
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Streptococcus taoyuanensis sp. nov., a Novel Species Isolated from a Patient with Bacteremia
    Chien-Yu Lee, Chin-Kan Chan, Yi-Sheng Chen, Yun-Shien Lee, Shih-Ting Lin, Yu-Chung Chang, Hui-Chung Wu, Jia-rong Zhang, Hong-yu Chen, Li-Ting Wang
    Current Microbiology.2024;[Epub]     CrossRef
  • Difference in gut microbial dysbiotic patterns between body-first and brain-first Parkinson's disease
    Don Gueu Park, Woorim Kang, In-Ja Shin, Mauricio Chalita, Hyun-Seok Oh, Dong-Wook Hyun, Hyun Kim, Jongsik Chun, Young-Sil An, Eun Jeong Lee, Jung Han Yoon
    Neurobiology of Disease.2024; 201: 106655.     CrossRef
  • Acidithiobacillus acidisediminis sp. nov., an acidophilic sulphur-oxidizing chemolithotroph isolated from acid mine drainage sediment
    Xiu-Tong Li, Zong-Lin Liang, Ye Huang, Zhen Jiang, Zhen-Ni Yang, Nan Zhou, Ying Liu, Shuang-Jiang Liu, Cheng-Ying Jiang
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Sphingomonas Immobilis sp. nov., and Sphingomonas natans sp. nov. bacteria isolated from soil
    Inyoung Choi, Sathiyaraj Srinivasan, Myung Kyum Kim
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Roseateles agri sp. nov., a New Species Isolated from Fresh Soil in Uiwang, South Korea
    Yelim You, Jaisoo Kim
    Diversity.2024; 16(5): 279.     CrossRef
  • Description of Roseibium sediminicola sp. nov. Isolated from Sediment of a Tidal Flat on the Yellow Sea Coast
    Soyeon Ahn, Veeraya Weerawongwiwat, Yunjeong Lee, David Hyung-Sun Choi, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
    Current Microbiology.2024;[Epub]     CrossRef
  • Chemolithoautotrophic diazotrophs dominate dark nitrogen fixation in mangrove sediments
    Shasha Wang, Lijing Jiang, Zhuoming Zhao, Zhen Chen, Jun Wang, Karine Alain, Liang Cui, Yangsheng Zhong, Yongyi Peng, Qiliang Lai, Xiyang Dong, Zongze Shao
    The ISME Journal.2024;[Epub]     CrossRef
  • Fontisubflavum oceani gen. nov., sp. nov., isolated from the deep-sea cold seep water of South China Sea
    Xiu-dan Xu, Dan-dan Zhou, Bin-zhe Zhang, Jian Zhang
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Paenibacillus glufosinatiresistens sp. nov., a glufosinate-resistant bacterium isolated from sludge
    Yan Wu, Yuwen Yang, Minglai Wan, Le Chen, Ye Yuan, Jian He, Baolong Zhang
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Erythrobacter oryzae sp. nov., isolated from rice paddy soil
    Hyo-Jin Lee, Ji-Soo Hwang, Eun-kyung Lee, Kyung-Sook Whang
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • SeqCode facilitates naming of South African rhizobia left in limbo
    Melandré van Lill, Stephanus N. Venter, Esther K. Muema, Marike Palmer, Wai Y. Chan, Chrizelle W. Beukes, Emma T. Steenkamp
    Systematic and Applied Microbiology.2024; 47(2-3): 126504.     CrossRef
  • A Novel Strain Burkholderia theae GS2Y Exhibits Strong Biocontrol Potential Against Fungal Diseases in Tea Plants (Camellia sinensis)
    Yijie Dong, Xing Wang, Guang-Da Feng, Qing Yao, Honghui Zhu
    Cells.2024; 13(21): 1768.     CrossRef
  • Clostridium omnivorum sp. nov., isolated from anoxic soil under the treatment of reductive soil disinfestation
    Atsuko Ueki, Akio Tonouchi, Nobuo Kaku, Sachi Honma, Katsuji Ueki
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Alkalimonas mucilaginosa sp. nov. and Alkalimonas cellulosilytica sp. nov. isolated from alkaline Lonar lake, India
    Sonia Thite, Devika Godbole, Mahima Debnath, Agrima Bhatt, Amit Yadav, Tushar Lodha, Neetha Joseph, Kiran Kirdat, Dibyajyoti Boruah, Roohani Sharma, Amaraja Joshi
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Genome-based taxonomic classification of the genus Sulfitobacter along with the proposal of a new genus Parasulfitobacter gen. nov. and exploring the gene clusters associated with sulfur oxidation
    Xiaokun Xu, Mengdan He, Qingjie Xue, Xiuzhen Li, Ang Liu
    BMC Genomics.2024;[Epub]     CrossRef
  • Aurantiacibacter flavus sp. nov. and Aurantiacibacter gilvus sp. nov., isolated from the mudflat of Suaeda japonica colonies
    Sunho Park, Inhyup Kim, Haejin Woo, Hyunji Lee, Subin Yook, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Ochrobactrum chromiisoli sp. nov., Isolated from Chromium-Contaminated Soil
    Yi Yang, Zhe Xu, Li Yang, Meng-yao Hu, Guang-yang Jiang, Jia Chen, Yi-chen Yang, Yongqiang Tian
    Current Microbiology.2024;[Epub]     CrossRef
  • Thiosulfate oxidation and autotrophy potential by marine prevalent heterotrophic bacteria of genus Marinobacter
    Fei Xu, Xiang Zeng, Yadong Gong, Zongze Shao
    Acta Oceanologica Sinica.2024; 43(8): 89.     CrossRef
  • Lacticaseibacillus parahuelsenbergensis sp. nov., Lacticaseibacillus styriensis sp. nov. and Lacticaseibacillus zeae subsp. silagei subsp. nov., isolated from different grass and corn silage
    Monika Grabner F., Monika Grabner H., Hermine Schein, Andrea Schrank, Manuela Töglhofer, Elisabeth Weidenholzer, Christian Rückert-Reed, Tobias Busche, Marlene Buchebner-Jance
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Draft genome sequence of 'Candidatus Phytoplasma asteris,’ strain SW86 associated with sandal spike disease (SSD)
    Kiran Kirdat, Bhavesh Tiwarekar, K. N. Manjula, S. Padma, Shivaji Sathe, R. Sundararaj, Amit Yadav
    3 Biotech.2024;[Epub]     CrossRef
  • Cold-adapted Exiguobacterium sibiricum K1 as a potential bioinoculant in cold regions: Physiological and genomic elucidation of biocontrol and plant growth promotion
    Sareeka Kumari, Anil Kumar, Ayush Lepcha, Rakshak Kumar
    Gene.2024; 916: 148439.     CrossRef
  • EcoGenoRisk: Developing a computational ecological risk assessment tool for synthetic biology
    Anna Ulanova, Cresten Mansfeldt
    Environmental Pollution.2024; 346: 123647.     CrossRef
  • Description of Aliirhizobium terrae sp. nov., A Plant Growth-Promoting Bacterium Isolated from a Maize-Rice Rotation Agriculture Field
    Shih-Yao Lin, Tzu-Yu Lin, Asif Hameed, Chia-Fang Tsai, Chiu-Chung Young
    Current Microbiology.2024;[Epub]     CrossRef
  • Novel oceanic cyanobacterium isolated from Bangaram island with profound acid neutralizing ability is proposed as Leptolyngbya iicbica sp. nov. strain LK
    Subhajeet Dutta, Shreya Kothari, Deeksha Singh, Samrat Ghosh, Aditya Narayan Sarangi, Smruti Sanjita Behera, Satish Prajapati, Prasanta Kumar Sinha, Asharani Prusty, Sucheta Tripathy
    Molecular Phylogenetics and Evolution.2024; 197: 108092.     CrossRef
  • Sulfide Toxicity as Key Control on Anaerobic Oxidation of Methane in Eutrophic Coastal Sediments
    Paula Dalcin Martins, João P. R. C. de Monlevad, Maider J. Echeveste Medrano, Wytze Klaas Lenstra, Anna Julia Wallenius, Martijn Hermans, Caroline P. Slomp, Cornelia Ulrike Welte, Mike S. M. Jetten, Niels A. G. M. van Helmond
    Environmental Science & Technology.2024; 58(26): 11421.     CrossRef
  • Phylogeny and genomic analysis of Shewanella cutis sp. nov., isolated from freshwater pufferfish
    Lipika Das, Ritu Rani Archana Kujur, Tanmoy Debnath, Subrata K. Das
    Folia Microbiologica.2024; 69(4): 723.     CrossRef
  • Aequorivita flava sp. nov., isolated from deep-sea sediments
    Xiangwei Chen, Jinmei Xia, Xiaoteng Fu, Qiliang Lai, Jianning Wang, Yaping Du, Xiupian Liu, Guangyu Li, Xixiang Tang, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Paraflavitalea pollutisoli sp. nov., Pollutibacter soli gen. nov. sp. nov., Polluticoccus soli gen. nov. sp. nov., and Terrimonas pollutisoli sp. nov., four new members of the family Chitinophagaceae from polluted soil
    Ze-Shen Liu, Xiao-Kang Wang, Ke-Huan Wang, Mei-Ling Yang, De-Feng Li, Shuang-Jiang Liu
    Systematic and Applied Microbiology.2024; 47(2-3): 126503.     CrossRef
  • Sinomonas terricola sp. nov., a plant-beneficial bacterium isolated from litchi rhizosphere soil in Guangdong, China
    Jiaxin Wan, Yang Zhou, Hui Sun, Huaping Li, Qing Yao, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Genetic and phenotypic diversity of Flavobacterium psychrophilum isolates from Czech salmonid fish farms
    Vera Vaibarova, Stanislava Kralova, Miroslava Palikova, Jana Schwarzerova, Julie Nejezchlebova, Darina Cejkova, Alois Cizek
    BMC Microbiology.2024;[Epub]     CrossRef
  • Citrobacter enshiensis sp. nov., isolated from seleniferous soil
    Sasa Zhang, Kui Li, Jing Peng, Haoyang Wang, Jiayin Sun, Yanbin Guo
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Distinct genome trichotomy in members of Hapalosiphonaceae is guided by habitat adaptation with Mastigocladus laminosus UU774 as a case study
    Aribam Geeta, Mayuri Mukherjee, Bornita Das, Subhajeet Dutta, Asharani Prusty, Samrat Ghosh, Anashuya Biswas Raha, Mousumi Poddar Sarkar, Sucheta Tripathy
    Algal Research.2024; 82: 103603.     CrossRef
  • Microbacterium aquilitoris sp. nov. and Microbacterium gwkjiense sp. nov., isolated from beach
    Soon Dong Lee, Hong Lim Yang, Ji-Sun Kim, In Seop Kim
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Microvirga sesbaniae sp. nov. and Microvirga yunnanensis sp. nov., Pink-Pigmented Bacteria Isolated from Root Nodules of Sesbania cannabina (Retz.) Poir.
    Nan Shi, Teng He, Huifang Qin, Ziye Wang, Shenghao You, Entao Wang, Guoli Hu, Fang Wang, Miao Yu, Xiaoyun Liu, Zhenyu Liu
    Microorganisms.2024; 12(8): 1558.     CrossRef
  • Microbacterium horticulturae sp. nov., a novel actinobacterium isolated from flowerpot soil
    Hyorim Choi, Yunhee Choi, Seunghwan Kim, Yiseul Kim, Hanako Naito, Tomomi Yamada, Moriyuki Hamada, NamJung Kim, Yonghoon Lee, Jun Heo
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Comparative genomics of the genus Halioglobus reveals the genetic basis for the reclassification of Halioglobus pacificus as Parahalioglobus pacificus gen. nov. comb. nov
    Jake Adolf V. Montecillo
    International Microbiology.2024; 27(6): 1831.     CrossRef
  • Paraburkholderia largidicola sp. nov., a gut symbiont of the bordered plant bug Physopelta gutta
    Reona Yashima, Yuan Terata, Kaoru Sakamoto, Miho Watanabe, Kazutaka Takeshita
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Sphingomonas longa sp. nov., Sphingomonas mollis sp. nov. and Sphingomonas aurea sp. nov.: three novel Sphingomonas species isolated from soil
    Eo Jin Kim, Soo Hyun Maeng, Myung Kyum Kim
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Genomics of the Thermophilic Bacterium Thermosulfidibacter takaii Reveals Novel Lineage of Deep-Branching Bacterial Phylum
    Jake Adolf V. Montecillo
    Indian Journal of Microbiology.2024; 64(2): 762.     CrossRef
  • Hyalangiumruber sp. nov, characterization of a novel myxobacterium strain s54d21 and their secondary metabolites
    Yi Zang, Xianjiao Zhang, Zhe Wang, Qingyi Tong, Yang Zhou, Qing Yao, Honghui Zhu
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Achromobacter seleniivolatilans sp. nov. and Buttiauxella selenatireducens sp. nov., isolated from the rhizosphere of selenium hyperaccumulator Cardamine hupingshanesis
    Sasa Zhang, Yi Liu, Hao Wang, Zhongnan Xu, Jing Peng, Qiaolin Xu, Kui Li, Haoyang Wang, Yanbin Guo
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Draft Genome Sequence Analyses of Two Novel Marinobacter suadae sp. nov. and Wenyingzhuangia gilva sp. nov. Isolated from the Root of Suaeda japonica Makino
    Sunho Park, Inhyup Kim, Geeta Chhetri, Yonghee Jung, Haejin Woo, Taegun Seo
    Life.2024; 14(3): 296.     CrossRef
  • Unveiling three novel actinobacterial species (Streptomyces cavernicola sp. nov., Streptomyces solicavernae sp. nov. and Streptomyces luteolus sp. nov.) in soil samples in Phu Pha Phet Cave, Thailand
    Nitcha Chamroensaksri, Supattra Muangham, Chanwit Suriyachadkun, Worawich Phornsiricharoenphant, Wongsakorn Phongsopitanun, Satinee Suetrong, Somboon Tanasupawat
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Cellulomonas alba sp. nov. and Cellulomonas edaphi sp. nov., isolated from wetland soils
    Sunho Park, Inhyup Kim, Geeta Chhetri, Yonghee Jung, Haejin Woo, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Microbacterium algihabitans sp. nov., Microbacterium phycohabitans sp. nov., and Microbacterium galbum sp. nov., isolated from dried beach seaweeds
    Soon Dong Lee, Hong Lim Yang, In Seop Kim
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Bifidobacterium apicola sp. nov., isolated from the gut of honeybee (Apis mellifera)
    Ting-Yu Wang, Hao Wang, Chun Tao Gu
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Polaribacter ponticola sp. nov., isolated from seawater, reclassification of Polaribacter undariae as a later heterotypic synonym of Polaribacter sejongensis, and emended description of Polaribacter sejongensis Kim et al. 2013
    Ju Hye Baek, Mahrukh Butt, Dong Min Han, Jeong Min Kim, Seohui Choi, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Description of Mycolicibacterium arenosum sp. nov. Isolated from Coastal Sand on the Yellow Sea Coast
    Jiseon Jeong, Soyeon Ahn, Thoi Cong Truong, Jong-Hwa Kim, Veeraya Weerawongwiwat, Jung-Sook Lee, Jung-Hoon Yoon, Ampaitip Sukhoom, Wonyong Kim
    Current Microbiology.2024;[Epub]     CrossRef
  • Genome analysis deciphered Chryseobacterium indicum is a distinct species associated with freshwater pufferfish
    Manish Prakash Victor, Ritu Rani Archana Kujur, Lipika Das, Subrata K. Das
    Infection, Genetics and Evolution.2024; 118: 105561.     CrossRef
  • Stable-isotope probing combined with amplicon sequencing and metagenomics identifies key bacterial benzene degraders under microaerobic conditions
    András Táncsics, Anna Bedics, Sinchan Banerjee, André Soares, Erzsébet Baka, Alexander J. Probst, Balázs Kriszt
    Biologia Futura.2024; 75(3): 301.     CrossRef
  • Streptococcus taonis sp. nov., a novel bacterial species isolated from a blood culture of a patient
    Chien-Yu Lee, Chin-Kan Chan, Momoko Chida, Mika Miyashita, Yun-Shien Lee, Hui-Chung Wu, Yu-Chung Chang, Wen-Ting Lin, Yi-Sheng Chen
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Shewanella phaeophyticola sp. nov. and Vibrio algarum sp. nov., isolated from marine brown algae
    Mahrukh Butt, Jaejoon Jung, Jeong Min Kim, Hülya Bayburt, Dong Min Han, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Two Novel Bacterial Species, Rhodanobacter lycopersici sp. nov. and Rhodanobacter geophilus sp. nov., Isolated from the Rhizosphere of Solanum lycopersicum with Plant Growth-Promoting Traits
    Haejin Woo, Inhyup Kim, Geeta Chhetri, Sunho Park, Hyunji Lee, Subin Yook, Taegun Seo
    Microorganisms.2024; 12(11): 2227.     CrossRef
  • Roseateles caseinilyticus sp. nov. and Roseateles cellulosilyticus sp. nov., isolated from rice paddy field soil
    Yoonseop So, Geeta Chhetri, Inhyup Kim, Sunho Park, Yonghee Jung, Taegun Seo
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • A Multilocus Sequence Typing Scheme for Rapid Identification of Xanthomonas citri Based on Whole-Genome Sequencing Data
    Efenaide B. Okoh, Michael Payne, Ruiting Lan, Markus Riegler, Toni A. Chapman, Daniel R. Bogema
    Phytopathology®.2024; 114(7): 1480.     CrossRef
  • Taxonomic characterization of Sphaerotilus microaerophilus sp. nov., a sheath-forming microaerophilic bacterium of activated sludge origin
    Shiori Narihara, Shun Chida, Naoki Matsunaga, Ryosuke Akimoto, Mizuki Akimoto, Aoi Hagio, Tomomi Mori, Tadashi Nittami, Michio Sato, Sehui Mun, Hyeonjin Kang, Ji Hwan Back, Minoru Takeda
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Dietary quality and the gut microbiome in early-stage Parkinson’s disease patients
    Hyun Jeong Yoon, Woorim Kang, Sungyang Jo, Yun Su Hwang, Je Hee Lee, Sun Ju Chung, Yoo Kyoung Park
    Nutritional Neuroscience.2024; 27(7): 761.     CrossRef
  • Shewanella youngdeokensis sp. nov. Isolated from Marine Sediment and Sea Water of East Sea in Republic of Korea
    Y.-S. Lee, H.-R. Jeong, E.-J. Hwang, M. P. Patil, S. S. Choi, Y. B. Seo, G.-D. Kim
    Microbiology.2024; 93(6): 737.     CrossRef
  • Methylomonas rivi sp. nov., Methylomonas rosea sp. nov., Methylomonas aurea sp. nov. and Methylomonas subterranea sp. nov., type I methane-oxidizing bacteria isolated from a freshwater creek and the deep terrestrial subsurface
    Christopher A. Abin, Christopher T. Garner, Krithivasan Sankaranarayanan, Reid A. Sindelar, Kyrah F. Kotary, Rosa M. Garner, Samantha C. Barclay, Haiyuan Cai, Paul A. Lawson, Lee R. Krumholz
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Lysobacter stagni sp. nov. and Limnohabitans lacus sp. nov., isolated from a pond
    Yonghee Jung, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Haejin Woo, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • EzBioCloud: a genome-driven database and platform for microbiome identification and discovery
    Mauricio Chalita, Yeong Ouk Kim, Sein Park, Hyun-Seok Oh, Jae Hyoung Cho, Jeongsup Moon, Nuga Baek, Changsik Moon, Kihyun Lee, Junwon Yang, Gi Gyun Nam, Yeonjae Jung, Seong-In Na, Michael James Bailey, Jongsik Chun
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Description and genomic characterization of Cohnella caldifontis sp. nov., isolated from hot springs in Yunnan province, south-west China
    Ming-Xian Xiang, Cui-Ping Miao, Dian-Yan Zhang, Juan Wang, Yi-Qing Li, Min Yin, ShuKun Tang
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Chitiniphilus purpureus sp. nov., a novel chitin-degrading bacterium isolated from crawfish pond sediment
    Kaiyang Li, Xiong Luo, Rongrong Fan, Zhuoran Ding, Shixue Zheng, Zhengjun Chen
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Phylogenomic analysis of metagenome-assembled genomes indicates new taxa in the order Spirochaetales and proposal of Thalassospirochaeta sargassi gen. nov. sp. nov. from seaweeds
    Kohli Pragya, Pannikurungottu Sreya, Lakshmanan Vighnesh, Dhurka Mahima, Mallick Sushmita, Chintalapati Sasikala, Chintalapati Venkata Ramana
    Systematic and Applied Microbiology.2024; 47(2-3): 126502.     CrossRef
  • Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
    Raúl Riesco, Martha E. Trujillo
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Description of Fuscovulum ytuae sp. nov, a facultative autotroph isolated from the intertidalite of Yangma island, China
    Bin-zhe Zhang, Xiu-dan Xu, Dan-dan Zhou, Xue-Peng Li, Xu-dong Jiao, Jian Zhang
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Phylogenomic analysis uncovers an unexpected capacity for the biosynthesis of secondary metabolites in Pseudoalteromonas
    Jingxuan Wang, Peng Li, Xue Di, Hongmei Lu, Huamao Wei, Shuai Zhi, David P. Fewer, Shan He, Liwei Liu
    European Journal of Medicinal Chemistry.2024; 279: 116840.     CrossRef
  • Roseateles subflavus sp. nov. and Roseateles aquae sp. nov., isolated from artificial pond water and Roseateles violae sp. nov., isolated from a Viola mandshurica root
    Haejin Woo, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Yonghee Jung, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Comamonas endophytica sp. nov., a novel indole acetic acid producing endophyte isolated from bamboo in China
    Jinjun Yue, Fu Yang, Youtie Xiao, Seqiao Lin, Zhengping He, Siyu Wang, Jiayi Zhao, Jinling Yuan, Lubin Li, Lei Liu
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Genome-Based Classification of Pedobacter albus sp. nov. and Pedobacter flavus sp. nov. Isolated from Soil
    Nhan Le Thi Tuyet, Jaisoo Kim
    Diversity.2024; 16(5): 292.     CrossRef
  • Sphingobacterium oryzagri sp. nov., isolated from rice paddy soil
    Seunghwan Kim, Jun Heo, Hyorim Choi, Daseul Lee, Soon-Wo Kwon, Yiseul Kim
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Paracoccus benzoatiresistens sp. nov., a benzoate resistance and selenite reduction bacterium isolated from wetland
    Weidong Mu, Haoran Liu, Bai Guo, Kaiyue Wang, Jinhua Hu, Jianjun Song, Xiuyun Li, Shuzhen Wei, Aijv Liu, Hongliang Liu
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Oceanimonas pelagia sp. nov., a novel biosurfactant-producing and plastic-degrading potential bacterium isolated from marine coastal sediment
    Hsiao-Tsu Yang, Yi-Hsuan Huang, Ying-Ning Ho
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Aquificae overcomes competition by archaeal thermophiles, and crowding by bacterial mesophiles, to dominate the boiling vent-water of a Trans-Himalayan sulfur-borax spring
    Nibendu Mondal, Subhajit Dutta, Sumit Chatterjee, Jagannath Sarkar, Mahamadul Mondal, Chayan Roy, Ranadhir Chakraborty, Wriddhiman Ghosh, Marcos Pileggi
    PLOS ONE.2024; 19(10): e0310595.     CrossRef
  • Simplicispira sedimenti sp. nov., isolated from a sediment of drainage ditch in winery
    Xing Chen, Yuan-Dong Li, Xiu-Ming Liu, Li Gao, Xing-Kui Zhou, Li-Min Dong, Gang Du, Neeli Habib, Wen-Jun Li, Yan-Qing Duan
    Antonie van Leeuwenhoek.2024;[Epub]     CrossRef
  • Lacticaseibacillus jixiensis sp. nov., Isolated from Traditional Chinese Pickle
    Si-Tong Song, Chun Yan Li, Chun Tao Gu
    Current Microbiology.2024;[Epub]     CrossRef
  • Crenobacter oryzisoli sp. nov., a novel phosphate-solubilizing bacterium isolated from the paddy soil
    Shu-Qun Zhang, Cheng-Jie Xie, Ling Yao, Christopher Rensing, Hao Lin, Guo-Hong Liu, Shun-Gui Zhou
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Flavobacterium capsici sp. nov., isolated from the rhizospheric soils of bell pepper (Capsicum annuum L.)
    Dong Hyun Cho, Yuxin Peng, Zalfa Humaira, Yu Lim Park, Hyun Jung Kim, Rae-Dong Jeong, Cha Young Kim, Jiyoung Lee
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Blastococcus montanus sp. nov., a multi-stress-resistant and bacteriostatic-producing bacterium isolated from the Flaming Mountain, Xinjiang,China
    Kexin Wang, Yang Liu, Xiaowen Cui, Tuo Chen, Guangxiu Liu, Wei Zhang, Zhiyong Han, Gaosen Zhang
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Phylogenomic evaluation of Mangrovimicrobium sediminis gen. nov. sp. nov., the first nitrogen fixing member of the family Halieaceae adapted to mangrove habitat and reclassification of Halioglobus pacificus to Pseudohaliglobus pacificus comb. nov.
    Pravin Kumar, Ashish Verma, Pooja Yadav, Joyasree Das, Lalit Kumar, Srinivasan Krishnamurthi
    Science of The Total Environment.2024; 933: 172995.     CrossRef
  • Arcobacteraceae are ubiquitous mixotrophic bacteria playing important roles in carbon, nitrogen, and sulfur cycling in global oceans
    Jianyang Li, Shizheng Xiang, Yufei Li, Ruolin Cheng, Qiliang Lai, Liping Wang, Guizhen Li, Chunming Dong, Zongze Shao, Thomas J. Sharpton
    mSystems.2024;[Epub]     CrossRef
  • Niabella digestorum sp. nov., a High Cell-Surface Hydrophobic Bacterium Isolated from Waste Digestion System
    Ling Zhang, Chuansheng Geng, Xingjuan Chen, Letian Chen, Tongchu Deng, Meiying Xu
    Current Microbiology.2024;[Epub]     CrossRef
  • Safety assessment, whole genome sequence, and metabolome analysis of Streptococcus thermophilus CICC 20372 for bone cement fermentation
    Rongshan Li, Yangfan Hu, Yang Xu, Jinlong Zhou, Yunfang Li, Qing Liu, Bo Yu
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Methylocystis suflitae sp. nov., a novel type II methanotrophic bacterium isolated from landfill cover soil
    Christopher T. Garner, Krithivasan Sankaranarayanan, Christopher A. Abin, Rosa M. Garner, Haiyuan Cai, Paul A. Lawson, Lee R. Krumholz
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Polysaccharide degradation in Cellvibrionaceae: Genomic insights of the novel chitin-degrading marine bacterium, strain KSP-S5-2, and its chitinolytic activity
    Nyok-Sean Lau, Go Furusawa
    Science of The Total Environment.2024; 912: 169134.     CrossRef
  • Nitrogen source influences the interactions of comammox bacteria with aerobic nitrifiers
    Katherine Jeanne Vilardi, Juliet Johnston, Zihan Dai, Irmarie Cotto, Erin Tuttle, Ariana Patterson, Aron Stubbins, Kelsey J. Pieper, Ameet J. Pinto, Erik F. Y. Hom
    Microbiology Spectrum.2024;[Epub]     CrossRef
  • Falsiroseomonas oryziterrae sp. nov., and Falsiroseomonas oryzae sp. nov., isolated from rice paddy soil
    Hyo-Jin Lee, Kyung-Sook Whang
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Pseudoalteromonas simplex sp. nov. Isolated from the Skin of Bandtail Puffer Fish (Sphoeroides spengleri)
    Hannah K. Mattsson, Mayanne A. M. de Freitas, Gustavo P. R. de Azevedo, Vinicius Salazar, Verônica V. Vieira, Diogo A. Tschoeke, Cristiane C. Thompson, Fabiano L. Thompson
    Current Microbiology.2024;[Epub]     CrossRef
  • Genomic evidence that Ornithinicoccus soli Jiang et al. 2020 is a later heterotypic synonym of Segeticoccus rhizosphaerae Lee and Whang 2020
    Qing Liu, Yu-Hua Xin
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Roseobacter fucihabitans sp. nov., isolated from the brown alga Fucus spiralis
    Sarah Hahnke, Martine Berger, Andrea Schlingloff, Isha Athale, Jacqueline Wolf, Meina Neumann-Schaal, Adenike Adenaya, Anja Poehlein, Rolf Daniel, Jörn Petersen, Thorsten Brinkhoff
    International Journal of Systematic and Evolutionary Microbiology .2024;[Epub]     CrossRef
  • Complete genome sequence of a novel Prescottella sp. R16 isolate from deep-sea sediments in the western Pacific
    Lingqi Ma, Yuqi Bai, Weili Wang, Shengxiang Pei, Gaiyun Zhang
    Frontiers in Genetics.2024;[Epub]     CrossRef
  • Randomized Clinical Trials Demonstrate the Safety Assessment of Alkalihalobacillus clausii AO1125 for Use as a Probiotic in Humans
    Gissel García, Josanne Soto, Antonio Díaz, Jesús Barreto, Carmen Soto, Ana Beatriz Pérez, Suselys Boffill, Raúl De Jesús Cano
    Microorganisms.2024; 12(11): 2299.     CrossRef
  • Ureibacillus aquaedulcis sp. nov., isolated from freshwater well and reclassification of Lysinibacillus yapensis and Lysinibacillus antri as Ureibacillus yapensis comb. nov. and Ureibacillus antri comb. nov.
    Amit Yadav, Ruchi Teware, Agrima Bhatt, Yash Bhavsar, Akanksha Maurya, Vipool Thorat, Venkata Ramana Vemuluri, Kiran Kirdat
    Archives of Microbiology.2024;[Epub]     CrossRef
  • Diverse and specialized metabolic capabilities of microbes in oligotrophic built environments
    Xinzhao Tong, Danli Luo, Marcus H. Y. Leung, Justin Y. Y. Lee, Zhiyong Shen, Wengyao Jiang, Christopher E. Mason, Patrick K. H. Lee
    Microbiome.2024;[Epub]     CrossRef
  • Sabulicella glaciei sp. nov., Isolated from Glacier, and Reclassification of Roseomonas rubea, Roseomonas ponticola and Roseomonas oleicola as Neoroseomonas rubea comb. nov., Falsiroseomonas ponticola comb. nov. and Falsiroseomonas oleicola comb. nov
    Qing Liu, Yu-Hua Xin
    Current Microbiology.2024;[Epub]     CrossRef
  • A functionally augmented carbohydrate utilization locus from herbivore gut microbiota fueled by dietary β-glucans
    Fernanda Mandelli, Marcele Pandeló Martins, Mariana Chinaglia, Evandro Antonio de Lima, Mariana Abrahão Bueno Morais, Tatiani Brenelli Lima, Lucélia Cabral, Renan Augusto Siqueira Pirolla, Felipe Jun Fuzita, Douglas Antônio Alvaredo Paixão, Maxuel de Oliv
    npj Biofilms and Microbiomes.2024;[Epub]     CrossRef
  • Active coexistence of the novel gammaproteobacterial methanotroph ‘Ca.Methylocalor cossyra’ CH1 and verrucomicrobial methanotrophs in acidic, hot geothermal soil
    Changqing Liu, Rob A. Schmitz, Arjan Pol, Carmen Hogendoorn, Daniël Verhagen, Stijn H. Peeters, Theo A. van Alen, Geert Cremers, Rob A. Mesman, Huub J. M. Op den Camp
    Environmental Microbiology.2024;[Epub]     CrossRef
  • Fodinisporobacter ferrooxydans gen. nov., sp. nov.—A Spore-Forming Ferrous-Oxidizing Bacterium Isolated from a Polymetallic Mine
    Zhen Jiang, Xiutong Li, Zonglin Liang, Zebao Tan, Nan Zhou, Ying Liu, Zhenghua Liu, Huaqun Yin, Kun Luo, Supawadee Ingsriswang, Shuangjiang Liu, Chengying Jiang
    Microorganisms.2024; 12(5): 853.     CrossRef
  • Massilia agrisoli sp. nov., isolated from rhizospheric soil of banana
    Md. Amdadul Huq, Juncai Ma, Sathiyaraj Srinivasan, Md. Anowar Khasru Parvez, M. Mizanur Rahman, Masoumeh Naserkheil, Md. Abuhena, Pulak Maitra, Fahadul Islam, Kihong NAM, Jong-Hyun Park, Shahina Akter
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Tamlana laminarinivorans sp. nov. and Tamlana sargassicola sp. nov., two novel species isolated from Sargassum, show genomic and physiological adaptations for a Sargassum-associated lifestyle
    Jin Li, Yumei Liang, Zhixiao He, Lu An, Yongjin Liu, Mingqi Zhong, Zhong Hu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Ecophysiological and Genomic Characterization of the Freshwater Complete Ammonia OxidizerNitrospirasp. Strain BO4
    Sabita Ghimire-Kafle, Matt E. Weaver, Annette Bollmann, Jennifer B. Glass
    Applied and Environmental Microbiology.2023;[Epub]     CrossRef
  • Bacteroides faecium sp. nov. isolated from human faeces
    Juseok Kim, Hye Seon Song, Joon Yong Kim, Tae Woong Whon, Won-Hyong Chung, Young-Do Nam, Yoon-E Choi, Seong Woon Roh
    International Journal of Systematic and Evolutionary Microbiology.2023;[Epub]     CrossRef
  • A minireview on the bioinformatics analysis of mobile gene elements in microbiome research
    Jana Schwarzerova, Anastasiya Labanava, Ivan Rychlik, Margaret Varga, Darina Cejkova
    Frontiers in Bacteriology.2023;[Epub]     CrossRef
  • Curtanaerobium respiraculi gen. nov., sp. nov., a novel anaerobic bacterium isolated from human bronchoalveolar lavage fluid
    Yifan Sun, Likun Wang, Dexing Han, Jianjie Li, Yuejiao Liu, Yafang Tan, Zhiyuan Pan, Ruifu Yang, Pinghua Qu, Ziping Wang, Yujing Bi
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Faecalibacterium hominis Liu et al. 2023 is a later heterotypic synonym of Faecalibacterium duncaniae Sakamoto et al. 2022
    Mitsuo Sakamoto, Naomi Sakurai, Hiroki Tanno, Takao Iino, Moriya Ohkuma, Akihito Endo
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Trichlorobacter ammonificans, a dedicated acetate-dependent ammonifier with a novel module for dissimilatory nitrate reduction to ammonia
    Dimitry Y Sorokin, Tamara V Tikhonova, Hanna Koch, Eveline M van den Berg, Renske S Hinderks, Martin Pabst, Natalia I Dergousova, Anastasia Y Soloveva, Gijs J Kuenen, Vladimir O Popov, Mark C M van Loosdrecht, Sebastian Lücker
    The ISME Journal.2023; 17(10): 1639.     CrossRef
  • Limobrevibacterium gyesilva gen. nov., sp. nov., Isolated from Forest Soil
    Nhan Le Thi Tuyet, Jaisoo Kim
    Diversity.2023; 15(5): 684.     CrossRef
  • Microbacterium tenebrionis sp. nov. and Microbacterium allomyrinae sp. nov., isolated from larvae of Tenebrio molitor L. and Allomyrina dichotoma, respectively
    Soon Dong Lee, In Seop Kim
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Roseateles albus sp. nov., Roseateles koreensis sp. nov. and Janthinobacterium fluminis sp. nov., isolated from freshwater at Jucheon River, and emended description of Roseateles aquaticus comb. nov.
    Sunho Park, Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Haejin Woo, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Species-specificity of the secondary biosynthetic potential in Bacillus
    Qun-Jian Yin, Ti-Ti Ying, Zhen-Yi Zhou, Gang-Ao Hu, Cai-Ling Yang, Yi Hua, Hong Wang, Bin Wei
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Taxonomic Study of Three Novel Paenibacillus Species with Cold-Adapted Plant Growth-Promoting Capacities Isolated from Root of Larix gmelinii
    Han Xue, Yan Tu, Tengfei Ma, Ning Jiang, Chungen Piao, Yong Li
    Microorganisms.2023; 11(1): 130.     CrossRef
  • Characterization and Antioxidant Activity of Exopolysaccharides Produced by Lysobacter soyae sp. nov Isolated from the Root of Glycine max L.
    Inhyup Kim, Geeta Chhetri, Yoonseop So, Sunho Park, Yonghee Jung, Haejin Woo, Taegun Seo
    Microorganisms.2023; 11(8): 1900.     CrossRef
  • Cyclitol metabolism is a central feature of Burkholderia leaf symbionts
    Bram Danneels, Monique Blignaut, Guillaume Marti, Simon Sieber, Peter Vandamme, Marion Meyer, Aurélien Carlier
    Environmental Microbiology.2023; 25(2): 454.     CrossRef
  • Sphingomonas abietis sp. nov., an Endophytic Bacterium Isolated from Korean Fir
    Lingmin Jiang, Hanna Choe, Yuxin Peng, Doeun Jeon, Donghyun Cho, Yue Jiang, Ju Huck Lee, Cha Young Kim, Jiyoung Lee
    Journal of Microbiology and Biotechnology.2023; 33(10): 1292.     CrossRef
  • Description of Brachybacterium sillae sp. nov., a thermophilic bacterium isolated from a hot spring
    Dariimaa Ganbat, DoKyung Oh, Yong-Jik Lee, Dong-Woo Lee, Seong-Bo Kim, Won-Jae Chi, Ki-Eun Lee, Byoung-Hee Lee, You-Jung Jung, Jung-Sook Lee, Sang-Jae Lee
    Antonie van Leeuwenhoek.2023; 116(8): 791.     CrossRef
  • Bacillus velezensis RC116 Inhibits the Pathogens of Bacterial Wilt and Fusarium Wilt in Tomato with Multiple Biocontrol Traits
    Honghong Dong, Ruixiang Gao, Yijie Dong, Qing Yao, Honghui Zhu
    International Journal of Molecular Sciences.2023; 24(10): 8527.     CrossRef
  • Cultivation of marine bacteria of the SAR202 clade
    Yeonjung Lim, Ji-Hui Seo, Stephen J. Giovannoni, Ilnam Kang, Jang-Cheon Cho
    Nature Communications.2023;[Epub]     CrossRef
  • Complex evolutionary history of photosynthesis in Bradyrhizobium
    Juanita R. Avontuur, P. Markus Wilken, Marike Palmer, Martin P. A. Coetzee, Tomasz Stępkowski, Stephanus N. Venter, Emma T. Steenkamp
    Microbial Genomics .2023;[Epub]     CrossRef
  • Brevibacillus ruminantium sp. nov., isolated from cow faeces
    Seunghwan Kim, Jun Heo, Soon-Wo Kwon, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Yiseul Kim
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Rhizobium acaciae sp. nov., a new nitrogen-fixing symbiovar isolated from root nodules of Acacia saligna in Tunisia
    Jihed Hsouna, Houda Ilahi, Jia-Cheng Han, Takwa Gritli, Walid Ellouze, Xiao Xia Zhang, Maroua Mansouri, Praveen Rahi, Mustapha Missbah El Idrissi, Mouad Lamrabet, M'hamed Oubla, Pierre Emmanuel Courty, Daniel Wipf, James T. Tambong, Bacem Mnasri
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Asticcacaulis aquaticus sp. nov., Asticcacaulis currens sp. nov. and Asticcacaulis machinosus sp. nov., isolated from streams in PR China
    Huibin Lu, Li Chen, Lingyang Kong, Linpei Huang, Guangjie Chen
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Maritalea mediterranea sp. nov., isolated from marine plastic residues
    Àngela Vidal-Verdú, Esther Molina-Menor, Leila Satari, Javier Pascual, Juli Peretó, Manuel Porcar
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Acidaminococcus homini s sp. nov., Amedibacillus hominis sp. nov., Lientehia hominis gen. nov. sp. nov., Merdimmobilis hominis gen. nov. sp. nov., and Paraeggerthella hominis sp. nov., isolated from human faeces
    Rashidin Abdugheni, Dan-Hua Li, Yu-Jing Wang, Meng-Xuan Du, Nan Zhou, Chang Liu, Shuang-Jiang Liu
    International Journal of Systematic and Evolutionary Microbiology.2023;[Epub]     CrossRef
  • Streptomyces albidoflavus Q antifungal metabolites inhibit the ergosterol biosynthesis pathway and yeast growth in fluconazole-resistant Candida glabrata : phylogenomic and metabolomic analyses
    Celia Bautista-Crescencio, Arturo Casimiro-Ramos, M. Jonathan Fragoso-Vázquez, José Correa-Basurto, Carlos Olano, César Hernández-Rodríguez, Lourdes Villa-Tanaca, Edward Sionov
    Microbiology Spectrum.2023;[Epub]     CrossRef
  • Neopusillimonas aromaticivorans sp. nov. isolated from poultry manure
    Shih-Yao Lin, Tzu-Yu Lin, Asif Hameed, Yu-Shan Tang, Chiu-Chung Young
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Microbacterium nymphoidis sp. nov. and Microbacterium festucae sp. nov., two novel species with high plant-promoting potential isolated from wetland plants in China
    Chunyi Li, Xiaoqian Jin, Fu Yang, Jiayi Zhao, Siyu Wang, Qiwu Sun, Lubin Li, Lei Liu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Salipiger pentaromativorans sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from mangrove sediment
    Jiangwei Li, Qiliang Lai, Anyi Hu, Huijie Liu, Dan Qin, Xiaoyong Yang, Yun Tian, Chang-Ping Yu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Dermatobacter hominis gen. nov., sp. nov., a new member of the family Iamiaceae, revealed the potential utilisation of skin-derived metabolites
    HyungWoo Jo, Chaeyun Baek, Young Mok Heo, Hye-Been Kim, Haeun Lee, Seunghyun Kang, Seyoung Mun, Yunseok Oh, Doyeong Ko, Kyudong Han, Raúl Riesco, Martha E. Trujillo, Dong-Geol Lee
    Antonie van Leeuwenhoek.2023; 116(11): 1139.     CrossRef
  • Cerina litoralis gen. nov., sp. nov., a novel potential polysaccharide degrading bacterium of the family Flavobacteriaceae, isolated from marine sediment
    Ya-Wei Wang, Xin-Hui Wang, Jing Zhang, Zong-Jun Du, Da-Shuai Mu
    Antonie van Leeuwenhoek.2023; 116(12): 1447.     CrossRef
  • Sphingomonas liriopis sp. nov., Sphingomonas donggukensis sp. nov., and Sphingomonas tagetis sp. nov., isolated from Liriope platyphylla fruit, soil, and Tagetes patula roots
    Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Sunho Park, Taegun Seo
    Archives of Microbiology.2023;[Epub]     CrossRef
  • Characterization of phytopathogen-preying Hyalangium versicolor sp. nov., and proposal for the reclassification of Cystobacter gracilis as Hyalangium gracile comb. Nov
    Xianjiao Zhang, Guangda Feng, Yang Liu, Jiali Li, Xiaoqin Deng, Qing Yao, Honghui Zhu
    Archives of Microbiology.2023;[Epub]     CrossRef
  • Thiorhodovibrio frisius and Trv. litoralis spp. nov., Two Novel Members from a Clade of Fastidious Purple Sulfur Bacteria That Exhibit Unique Red-Shifted Light-Harvesting Capabilities
    Anika Methner, Steven Kuzyk, Jörn Petersen, Sabine Bauer, Henner Brinkmann, Katja Sichau, Gerhard Wanner, Jacqueline Wolf, Meina Neumann-Schaal, Petra Henke, Marcus Tank, Cathrin Spröer, Boyke Bunk, Jörg Overmann
    Microorganisms.2023; 11(10): 2394.     CrossRef
  • Genomic attributes and characterization of novel exopolysaccharide-producing bacterium Halomonas piscis sp. nov. isolated from jeotgal
    Bora Kim, Ah-In Yang, Hae-In Joe, Ki Hyun Kim, Hanna Choe, Sung-Hong Joe, Min Ok Jun, Na-Ri Shin
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Corynebacterium lipophilum sp. nov., a lipophilic bacterium isolated from clinical breast specimens and emended description of the species Corynebacterium pilbarense
    Qiang Luo, Haimin Luo, Tianqi Zhang, Xiaofang Liu, Xiaowei Chen, Qianming Chen, Junhui Feng, Pinghua Qu, Cha Chen, Ning Xu
    Antonie van Leeuwenhoek.2023; 116(10): 1091.     CrossRef
  • Arcobacter roscoffensis sp. nov., a marine bacterium isolated from coastal seawater
    Javier Pascual, Cendrella Lepleux, Anika Methner, Cathrin Spröer, Boyke Bunk, Jörg Overmann
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Ferranicluibacter rubi gen. nov., sp. nov., a new member of family Rhizobiaceae isolated from stems of elmleaf blackberry (Rubus ulmifolius Schott) in Northwest Spain
    Rocio Roca-Couso, Jose David Flores-Felix, Jose M. Igual, Paula García-Fraile, Encarna Velázquez, Raúl Rivas
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Sulfurovum mangrovi sp. nov., an obligately chemolithoautotrophic, hydrogen-oxidizing bacterium isolated from coastal marine sediments
    Yufei Li, Shasha Wang, Bowen Ji, Qing Yuan, Shiping Wei, Qiliang Lai, Kaiyue Wu, Lijing Jiang, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Hominibacterium faecale gen. nov., sp. nov., an anaerobic l-arginine-degrading bacterium isolated from human feces
    Noori Borhanudin, Min Yang, Andrei V. Chaplin, Jiang Li, Qiong Wang, Li-rong Dai, Ke-jia Wu, Shi-chun Ma, Boris A. Efimov, Lei Cheng
    Archives of Microbiology.2023;[Epub]     CrossRef
  • Curtobacterium caseinilyticum sp. nov., Curtobacterium subtropicum sp. nov. and Curtobacterium citri sp. nov., isolated from citrus phyllosphere
    Guang-Da Feng, Jiali Li, Songzhen Yang, Jun Zhang, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Vibrio intestinalis sp. nov., isolated from intestine of seahorse
    Libo Yu, Shiping Wei, Zhidong Zhou, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Chitinophaga nivalis sp. nov., isolated from forest soil in Pyeongchang, Republic of Korea
    Ngoc Hoang Trinh, Jaisoo Kim
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Reclassification of Clostridium cocleatum, Clostridium ramosum, Clostridium spiroforme and Clostridium saccharogumia as Thomasclavelia cocleata gen. nov., comb. nov., Thomasclavelia ramosa comb. nov., gen. nov., Thomasclavelia spiroformis comb. nov. and T
    Paul A. Lawson, Liz Saavedra Perez, Krithivasan Sankaranarayanan
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Paracoccus albicereus sp. nov., isolated from the shallow-sea hydrothermal system off Kueishantao Island
    Yajie He, Dan Lin, Beihan Chen, Xinzhu Liu, Jianing Ye, Jia Sun, Kai Tang
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Flectobacillus longus sp. nov. and Flectobacillus rivi sp. nov., isolated from streams in China and reclassification of Flectobacillus rhizosphaerae as a synonym of Flectobacillus roseus
    Huibin Lu, Ping Li, Li Chen, Guangjie Chen
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Aequorivita vitellina sp. nov. and Aequorivita xiaoshiensis sp. nov., isolated from marine sediment
    Ya-Wei Wang, Jing Zhang, Shu-Xin Wang, Zong-Jun Du, Da-Shuai Mu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Two novel symbiovars of Bradyrhizobium yuanmingense, americaense and caribense, the symbiovar tropici of Bradyrhizobium pachyrhizi and the symbiovar cajani of Bradyrhizobium cajani are microsymbionts of the legume Cajanus cajan in Dominican Republic
    José David Flores-Félix, Fernando Sánchez-Juanes, Juan Araujo, César Antonio Díaz-Alcántara, Encarna Velázquez, Fernando González-Andrés
    Systematic and Applied Microbiology.2023; 46(5): 126454.     CrossRef
  • Frateuria soli sp. nov. and Frateuria edaphi sp. nov., isolated from greenhouse soil
    Miyoung Won, Jun Heo, Hang-Yeon Weon, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Soon-Wo Kwon
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Four new Microbacterium species isolated from seaweeds and reclassification of five Microbacterium species with a proposal of Paramicrobacterium gen. nov. under a genome-based framework of the genus Microbacterium
    Soon Dong Lee, Hong Lim Yang, In Seop Kim
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Actinomadura terrae sp. nov. and Actinomadura litoris OS3-89, isolated from rhizosphere soil of cactus
    Soon Dong Lee, Hong Lim Yang, In Seop Kim, Hanna Choe, Ji-Sun Kim
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Bioplastic (poly-3-hydroxybutyrate)-producing Massilia endophytica sp. nov., isolated from Cannabis sativa L. ‘Cheungsam’
    Doeun Jeon, Lingmin Jiang, Ki-Hyun Kim, Yuxin Peng, Donghyun Cho, Rae-Dong Jeong, Cha Young Kim, Jae Cheol Jeong, Jiyoung Lee
    Scientific Reports.2023;[Epub]     CrossRef
  • Similar but different: Characterization of dddD gene–mediated DMSP metabolism among coral-associated Endozoicomonas
    Yu-Jing Chiou, Ya-Fan Chan, Sheng-Ping Yu, Chih-Ying Lu, Silver Sung-Yun Hsiao, Pei-Wen Chiang, Ting-Chang Hsu, Po-Yu Liu, Naohisa Wada, Yu Lee, Wann-Neng Jane, Der-Chuen Lee, Yu-Wen Huang, Sen-Lin Tang
    Science Advances.2023;[Epub]     CrossRef
  • Halomonas dongshanensis sp. nov., isolated from the seawater of Dongshan Island
    Wen-zhen Lin, Lin-feng Gong, Ying Guo, Ru-zhen Liu, Wei Xu, Qi-yang Guan, Chi-ming Guo, Zhi-kai Lin, Hong-yan Meng, Xiao-yao Chen
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Reclassification of Sabulilitoribacter multivorans and Sabulilitoribacter arenilitoris as Flaviramulus multivorans comb. nov. and Wocania arenilitoris comb. nov., respectively, based on genome sequence analysis
    Ang Liu, Xinyue Dong, Wanting Wang, Jiayi Qin, Hongyu Leng, Chenlong Yan, Longyu Zhao
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Tahibacter harae sp. nov., isolated from pig farm soil in Guangdong, PR China
    Haixin Chen, Yang Zhou, Qing Yao, Hongxia Jiang, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Paenibacillus soyae sp. nov., isolated from the rhizosphere of soya bean
    Hui Zhao, Yue Su, Qihui Gu, Jumei Zhang, Xinqiang Xie, Qingping Wu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Maribacter aquimaris sp. nov., isolated from seawater adjacent to Fildes Peninsula, Antarctica
    Yanfeng Zhang, Yanwu Zhai, Lulu Mu, Miaomiao Hu, Wei Fang, Yazhong Xiao, Zemin Fang
    Antonie van Leeuwenhoek.2023; 116(8): 753.     CrossRef
  • Three novel marine species of the genus Reichenbachiella exhibiting degradation of complex polysaccharides
    Neak Muhammad, Forbes Avila, Olga I. Nedashkovskaya, Song-Gun Kim
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Isolation of Spirosoma foliorum sp. nov. from the fallen leaf of Acer palmatum by a novel cultivation technique
    Ho Le Han, Dian Alfian Nurcahyanto, Neak Muhammad, Yong-Jae Lee, Tra T. H. Nguyen, Song-Gun Kim, Sook Sin Chan, Kuan Shiong Khoo, Kit Wayne Chew, Pau Loke Show, Thi Ngoc Thu Tran, Thi Dong Phuong Nguyen, Chen Yaw Chiu
    Scientific Reports.2023;[Epub]     CrossRef
  • Identification and genomic analysis of Pseudosulfitobacter koreense sp. nov. isolated from toxin-producing dinoflagellate Alexandrium pacificum
    Yue Jiang, Zhun Li
    Archives of Microbiology.2023;[Epub]     CrossRef
  • Agromyces larvae sp. nov., a novel actinobacterium isolated from gut of larvae of Protaetia brevitarsis seulensis
    Miyoung Won, Parthiban Subramanian, Seunghwan Kim, Jun Heo, Hanako Naito, Tomomi Asano, Moriyuki Hamada, Soon-Wo Kwon
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Antioxidant prodigiosin-producing cold-adapted Janthinobacterium sp. ERMR3:09 from a glacier moraine: Genomic elucidation of cold adaptation and pigment biosynthesis
    Srijana Mukhia, Anil Kumar, Rakshak Kumar
    Gene.2023; 857: 147178.     CrossRef
  • Oryzibacter oryziterrae gen. nov., sp. nov., isolated from rice paddy soil
    Hyo-Jin Lee, Kyung-Sook Whang
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Trinickia mobilis sp. nov. and Trinickia acidisoli sp. nov., isolated from soil
    You-qi Wang, Bing-nan Zhao, Xiu-yin Guo, Ke-cheng Wu, Li-hong Qiu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Metabolic Versatility of the FamilyHalieaceaeRevealed by the Genomics of Novel Cultured Isolates
    Shan-Hui Li, Ilnam Kang, Jang-Cheon Cho, Eva C. Sonnenschein
    Microbiology Spectrum.2023;[Epub]     CrossRef
  • Description of Luteibacter aegosomatis sp. nov., Luteibacter aegosomaticola sp. nov., and Luteibacter aegosomatissinici sp. nov. isolated from the Intestines of Aegosoma sinicum Larvae
    Hae-In Joe, Jee-Won Choi, June-Young Lee, Hojun Sung, Su-Won Jeong, Yun-Seok Jeong, Jae-Yun Lee, Jin-Woo Bae
    Journal of Microbiology.2023; 61(6): 603.     CrossRef
  • Alkalimarinus alittae sp. nov., isolated from gut of marine sandworm (Alitta virens) and emended description of the genus Alkalimarinus
    Ah-In Yang, Hae-In Joe, Hanna Choe, Han Sol Kim, Mi Kyung Eom, Zhun Li, Min Ok Jun, Bora Kim, Jung-Sook Lee, Na-Ri Shin
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Pan-Genome Analyses of the Genus Cohnella and Proposal of the Novel Species Cohnella silvisoli sp. nov., Isolated from Forest Soil
    Chunling Wang, Lutian Mao, Gegen Bao, Honghui Zhu
    Microorganisms.2023; 11(11): 2726.     CrossRef
  • Five novel Hymenobacter species isolated from air: Hymenobacter cellulosilyticus sp. nov., Hymenobacter cellulosivorans sp. nov., Hymenobacter aerilatus sp. nov., Hymenobacter sublimis sp. nov. and Hymenobacter volaticus sp. nov.
    Yiseul Kim, Parthiban Subramanian, Hyorim Choi, Hang-Yeon Weon, Seunghwan Kim, Soon-Wo Kwon, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Jun Heo
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Vogesella aquatica sp. nov. and Vogesella margarita sp. nov., isolated from rivers in Southwest China
    Huibin Lu, Li Chen, Lingyang Kong, Linpei Huang, Guangjie Chen
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • tilS and rpoB: New Molecular Markers for Phylogenetic and Biodiversity Studies of the Genus Thiothrix
    Nikolai V. Ravin, Dmitry D. Smolyakov, Nikita D. Markov, Alexey V. Beletsky, Andrey V. Mardanov, Tatyana S. Rudenko, Margarita Yu. Grabovich
    Microorganisms.2023; 11(10): 2521.     CrossRef
  • Poseidonibacter ostreae sp. nov., Isolated from the Gut of Ostrea from the Seomjin River
    Kiwoon Baek, Sumin Jang, Eu Jin Chung, Shi Hyun Ryu, Ahyoung Choi
    Diversity.2023; 15(8): 920.     CrossRef
  • Paenibacillus dendrobii sp. nov., an indole-3-acetic acid-producing endophytic bacterium isolated from Dendrobium nobile
    Yadong Hu, Hongjie Li, Yaoyi Chen, Qiling Zhang, Shigang Zheng, Dan Rao, Ze Chun, Ruoxi Zhao
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Gillisia lutea sp. nov., isolated from marine aluminium residues from the Mediterranean sea
    Àngela Vidal-Verdú, Esther Molina-Menor, Javier Pascual, Juli Peretó, Manuel Porcar
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Flavobacterium potami sp. nov., a multi-metal resistance genes harbouring bacterium isolated from shallow river silt
    Shucheng Li, Sidi Mao, Weidong Mu, Bai Guo, Chen Li, Qing Zhu, Xiaoxiao Hou, Yanfang Zhao, Shuzhen Wei, Hongliang Liu, Aiju Liu
    Antonie van Leeuwenhoek.2023; 116(3): 265.     CrossRef
  • Ligilactobacillus cholophilus sp. nov., isolated from pickled potherb mustard (Brassica juncea Coss.)
    Quanlu Ren, Danqi Wang, Jin Han, Jing Wang, Zhenmin Liu, Zhengjun Wu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • EasyCGTree: a pipeline for prokaryotic phylogenomic analysis based on core gene sets
    Dao-Feng Zhang, Wei He, Zongze Shao, Iftikhar Ahmed, Yuqin Zhang, Wen-Jun Li, Zhe Zhao
    BMC Bioinformatics.2023;[Epub]     CrossRef
  • Genome-based analyses of the genus Acidovorax: proposal of the two novel genera Paracidovorax gen. nov., Paenacidovorax gen. nov. and the reclassification of Acidovorax antarcticus as Comamonas antarctica comb. nov. and emended description of the genus Ac
    Juan Du, Yang Liu, Honghui Zhu
    Archives of Microbiology.2023;[Epub]     CrossRef
  • Genomic insights of an alkaliphilic bacterium Halalkalibacter alkaliphilus sp. nov. isolated from an Indian Soda Lake
    Amaraja Joshi, Sonia Thite, Tushar Lodha, Neetha Joseph, Purva Mengade
    Antonie van Leeuwenhoek.2023; 116(5): 435.     CrossRef
  • Genome-Wide Pathway Exploration of the Epidermidibacterium keratini EPI-7T
    Yunseok Oh, Seyoung Mun, Young-Bong Choi, HyungWoo Jo, Dong-Geol Lee, Kyudong Han
    Microorganisms.2023; 11(4): 870.     CrossRef
  • Pseudomonas cucumis sp. nov., isolated from the rhizosphere of crop plants
    Kaiji Liao, Jianying Liu, Yi-Lin Gu, Can Wang, Hai-Lei Wei
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Three marine species of the genus Fulvivirga, rich sources of carbohydrate-active enzymes degrading alginate, chitin, laminarin, starch, and xylan
    Tra T. H. Nguyen, Tien Q. Vuong, Ho Le Han, Zhun Li, Yong-Jae Lee, Jaeho Ko, Olga I. Nedashkovskaya, Song-Gun Kim
    Scientific Reports.2023;[Epub]     CrossRef
  • Novosphingobium beihaiensis sp. nov., a novel pesticide-tolerant bacterium isolated from mangrove sediments
    Wenjin Hu, Yiying Huang, Yingjing Liu, Xiaoying Zhou, Shushi Huang, Jiemei Chu, Xinli Pan
    Antonie van Leeuwenhoek.2023; 116(11): 1151.     CrossRef
  • Paracoccus onchidii sp. nov., a moderately halophilic bacterium isolated from a marine invertebrate from the South China Sea
    Shan-shan Xu, Qi-liang Lai, Zeng-zhi Liu, Ying Xu
    Antonie van Leeuwenhoek.2023; 116(8): 801.     CrossRef
  • Ideonella oryzae sp. nov., isolated from soil, and Spirosoma liriopis sp. nov., isolated from fruits of Liriope platyphylla
    Yonghee Jung, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Mariniradius sediminis sp. nov., a multi-xenobiotics degrading genes harbouring bacterium isolated from sediment of river
    Shucheng Li, Weidong Mu, Haoran Liu, Bai Guo, Sidi Mao, Changqing Su, Hui Li, Zhiqiang Zhang, Aijv Liu, Shuzhen Wei, Hongliang Liu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Description of Xanthocytophaga agilis sp. nov. and Xanthocytophaga flavus sp. nov. of the new genus Xanthocytophaga gen. nov and the proposal of Rhodocytophagaceae fam. nov. within the order Cytophagales
    Xianjiao Zhang, Guang-Da Feng, Yang Liu, Fan Yang, Yanxuan Li, Xiaoqin Deng, Honghui Zhu, Qing Yao
    Archives of Microbiology.2023;[Epub]     CrossRef
  • A nostoxanthin-producing bacterium, Sphingomonas nostoxanthinifaciens sp. nov., alleviates the salt stress of Arabidopsis seedlings by scavenging of reactive oxygen species
    Lingmin Jiang, Jiyoon Seo, Yuxin Peng, Doeun Jeon, Ju Huck Lee, Cha Young Kim, Jiyoung Lee
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Halobacillus salinarum sp. nov., Halobacillus shinanisalinarum sp. nov. and Halobacillus amylolyticus sp. nov., isolated from saltern soil
    Yiseul Kim, Seunghwan Kim, Soon-Wo Kwon, Hang-Yeon Weon, Hanako Naito, Tomomi Asano, Moriyuki Hamada, Jun Heo
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Lignin-oxidizing and xylan-hydrolyzing Vibrio involved in the mineralization of plant detritus in the continental slope
    Jianyang Li, Chunming Dong, Biswarup Sen, Qiliang Lai, Linfeng Gong, Guangyi Wang, Zongze Shao
    Science of The Total Environment.2023; 854: 158714.     CrossRef
  • Alteromonas gilva sp. nov. and Erythrobacter fulvus sp. nov., isolated from a tidal mudflat
    Sunho Park, Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Haejin Woo, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Sphingobium nicotianae sp. nov., isolated from tobacco soil
    Rongrong Fan, Xiong Luo, Mengjuan Hong, Ruijia Yang, Xinyi Dong, Heli Shi, Mingshun Li
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Investigation of the potential of Brevibacillus spp. for the biosynthesis of nonribosomally produced bioactive compounds by combination of genome mining with MALDI-TOF mass spectrometry
    Jennifer Jähne, Stefanie Herfort, Joerg Doellinger, Peter Lasch, Le Thi Thanh Tam, Rainer Borriss, Joachim Vater
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Phylogenomic analysis of the genus Alcanivorax: proposal for division of this genus into the emended genus Alcanivorax and two novel genera Alloalcanivorax gen. nov. and Isoalcanivorax gen. nov.
    Anusha Rai, Gandham Suresh, Biswas Ria, Vighnesh L, Sreya PK, Sahu Ipsita, Chintalapati Sasikala, Chintalapati Venkata Ramana
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Corynebacterium oculi-related bacterium may act as a pathogen and carrier of antimicrobial resistance genes in dogs: a case report
    Milena Tresch, Christine Watté, Michele Stengard, Corinne Ritter, Isabelle Brodard, Simon Feyer, Estelle Gohl, Ezgi Akdesir, Vincent Perreten, Sonja Kittl
    BMC Veterinary Research.2023;[Epub]     CrossRef
  • Jeongeuplla avenae gen. nov., sp. nov., a novel β-carotene-producing bacterium that alleviates salinity stress in Arabidopsis
    Lingmin Jiang, Yuxin Peng, Ki-Hyun Kim, Doeun Jeon, Hanna Choe, Ah-Reum Han, Cha Young Kim, Jiyoung Lee
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Taxonomic descriptions of Aeromicrobium duanguangcaii sp. nov., Aeromicrobium wangtongii sp. nov. and Aeromicrobium senzhongii sp. nov.
    Lin Ye, Gui Zhang, Jing Yang, Caixin Yang, Yue Liu, Ji Pu, Yuyuan Huang, Sihui Zhang, Dong Jin, Shan Lu, Liyun Liu, Jianguo Xu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Characterization of four novel bacterial species of the genus Sphingomonas, Sphingomonas anseongensis, Sphingomonas alba, Sphingomonas brevis and Sphingomonas hankyongi sp.nov., isolated from wet land
    Muhammad Zubair Siddiqi, Govindan Rajivgandhi, Soon-Youl Lee, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Neiella litorisoli sp. nov., an alginate lyase: producing bacterium from South China Sea, and proposal of Echinimonadaceae fam. nov. in the order Alteromonadales
    Jing-Ran Sun, Kun-Lian Mo, Xue Li, Yong-Hua Hu, Zhi-Yuan Liu, Hui-Qin Huang
    Archives of Microbiology.2023;[Epub]     CrossRef
  • Paraburkholderia flagellata sp. nov. and Paraburkholderia adhaesiva sp. nov., two novel species isolated from forest soil in Dinghushan Biosphere Reserve in Guangdong, China
    Xiu-yin Guo, Ke-cheng Wu, Cheng-zhi Dong, Qiu-mei Zhang, Li-hong Qiu
    Antonie van Leeuwenhoek.2023; 116(10): 1023.     CrossRef
  • Comparative genomics reveals environmental adaptability and antimicrobial activity of a novel Streptomyces isolated from soil under black Gobi rocks
    Ying Wen, Binglin Zhang, Gaosen Zhang, Minghui Wu, Ximing Chen, Tuo Chen, Guangxiu Liu, Wei Zhang
    Antonie van Leeuwenhoek.2023; 116(12): 1407.     CrossRef
  • Phylotaxonomic assessment based on four core gene sets and proposal of a genus definition among the families Paracoccaceae and Roseobacteraceae
    Dao-Feng Zhang, Wei He, Zongze Shao, Iftikhar Ahmed, Yuqin Zhang, Wen-Jun Li, Zhe Zhao
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Pseudarthrobacter humi sp. nov., an actinobacterium isolated from soil
    Inhyup Kim, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Description of Salinimicrobium tongyeongense sp. nov., isolated from seawater
    Dariimaa Ganbat, Dong-Woo Lee, Seong-Bo Kim, Yong-Jik Lee, Gaewon Nam, Won-Jae Chi, Byoung-Hee Lee, You-Jung Jung, Jung-Sook Lee, Sang-Jae Lee
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Biocontrol potential of bacteria belonging to the Bacillus subtilis group against pests and diseases of agricultural interest through genome exploration
    Gabriela Teodoro Rocha, Paulo Roberto Martins Queiroz, Priscila Grynberg, Roberto Coiti Togawa, Antônia Débora Camila de Lima Ferreira, Izabela Nunes do Nascimento, Ana Cristina Meneses Mendes Gomes, Rose Monnerat
    Antonie van Leeuwenhoek.2023; 116(7): 599.     CrossRef
  • Mesorhizobium liriopis sp. nov., isolated from the fermented fruit of Liriope platyphylla a medicinal plant
    Inhyup Kim, Geeta Chhetri, Yoonseop So, Sunho Park, Yonghee Jung, Haejin Woo, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Tianweitania aestuarii sp. nov., isolated from a coastal dune, reclassification of Corticibacterium populi as Tianweitania populi comb. nov., and emended description of the genus Tianweitania
    Ji Hyeon Song, Sooyeon Park, Jung-Sook Lee, Wonyong Kim, Jung-Hoon Yoon
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Roseobacter insulae sp. nov. and Loktanella gaetbuli sp. nov., isolated from tidal flats in the Yellow Sea in Korea
    Eun Bee Lee, Sooyeon Park, Wonyong Kim, Jung-Hoon Yoon
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi
    Dongwook Kim, Cameron L M Gilchrist, Jongsik Chun, Martin Steinegger
    Nucleic Acids Research.2023; 51(D1): D777.     CrossRef
  • Bioassay and Whole-Genome Analysis of Bacillus velezensis FIO1408, a Biocontrol Agent Against Pathogenic Bacteria in Aquaculture
    Wenhao Huang, Lingyun Qu, Ping Gao, Guangxun Du
    Current Microbiology.2023;[Epub]     CrossRef
  • VBCG: 20 validated bacterial core genes for phylogenomic analysis with high fidelity and resolution
    Renmao Tian, Behzad Imanian
    Microbiome.2023;[Epub]     CrossRef
  • Neoroseomonas alba sp. nov., Neoroseomonas nitratireducens sp. nov., Paraoseomonas indoligenes sp. nov and Paraoseomonas baculiformis sp. nov., isolated from the rhizosphere of paddy soil
    Yoonseop So, Geeta Chhetri, Inhyup Kim, Jiyoun Kim, Sunho Park, Yonghee Jung, Taegun Seo
    Antonie van Leeuwenhoek.2023; 116(10): 1009.     CrossRef
  • Microbacterium plantarum sp. nov. and Microbacterium thalli sp. nov., two endophytic metal-resistant bacteria isolated from Sphaeralcea angustifolia (Cav.) G. Don and Prosopis laevigata (Humb. et Bonpl. ex Willd) M.C. Johnston
    Ivan Arroyo-Herrera, Brenda Román-Ponce, Rafael Bustamante-Brito, Joseph Guevara-Luna, Violeta Larios-Serrato, Lorena Carro, Jose Mariano Igual, Otto Geiger, Ayixon Sánchez-Reyes, Paulina Estrada-de los Santos, En Tao Wang, María Soledad Vásquez-Murrieta
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Genome insight and probiotic potential of three novel species of the genus Corynebacterium
    Md Shamsuzzaman, Ram Hari Dahal, Shukho Kim, Jungmin Kim
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Marinobacterium lacunae sp. nov. isolated from estuarine sediment
    Srinivas Naga Radha Tanuku, Anil Kumar Pinnaka, Swarnaprava Behera, Aditya Singh, Sudharani Pydi, Gunjan Vasudeva, Bhumika Vaidya, Gunjan Sharma, Sampath Kumar Ganta, Naveen Sagar Garbhapu
    Archives of Microbiology.2023;[Epub]     CrossRef
  • Solicola gregarius gen. nov., sp. nov., a soil actinobacterium isolated after enhanced cultivation with Micrococcus luteus culture supernatant
    Marco A. Lopez Marin, Jachym Suman, Kunal Jani, Pavel Ulbrich, Tomas Cajthaml, Alena Filipova, Petr Pajer, Meina Neumann-Schaal, Michal Strejcek, Ondrej Uhlik
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Draft Genome Sequence of Afifella sp. Strain JA880, Isolated from a Salt Pond
    Jagadeeshwari Uppada, Sasikala Chintalapati, Venkata Ramana Chintalapati, J. Cameron Thrash
    Microbiology Resource Announcements.2023;[Epub]     CrossRef
  • Sphingomonas cremea sp. nov., isolated from ginseng soil
    Yuna Park, Qingzhen Liu, Soohyun Maeng, Hyejin Oh, Chan-Seok Yun, Hanna Choe, Hyang Burm Lee, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Marixanthotalea marina gen. nov., sp. nov., a bacterium in the family Flavobacteriaceae isolated from seawater
    Zi-Yue Fu, Hua-Peng Xue, Wei He, Guang-Yuan Ma, Ai Hua Zhang, Dao-Feng Zhang, Wen-Jun Li
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Aerococcus agrisoli sp. nov., isolated from paddy soil
    Lina Sun, Wen Qiu, Xinhua Gao, Zechao Cheng, Kaihua Huang, Wei Chen
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Bacillus changyiensis sp. nov., isolated from coastal sediment
    Guiqian Xiao, Qiliang Lai, Guangyu Li, Shanshan Wang, Yunyong Lin, Zongze Shao, Zhong Hu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Whole-genome sequencing of a biocontrol Myxococcus xanthus R31 isolate and comparative genomic analysis
    Honghong Dong, Ruixiang Gao, Yijie Dong, Qing Yao, Honghui Zhu
    Gene.2023; 863: 147286.     CrossRef
  • Comparative biodegradation analysis of three compostable polyesters by a marine microbial community
    Ingrid E. Meyer Cifuentes, Julius Degenhardt, Meina Neumann-Schaal, Nico Jehmlich, David Kamanda Ngugi, Başak Öztürk, Ning-Yi Zhou
    Applied and Environmental Microbiology.2023;[Epub]     CrossRef
  • Leucobacter allii sp. nov. and Leucobacter rhizosphaerae sp. nov., isolated from rhizospheres of onion and garlic, respectively
    Seunghwan Kim, Tomomi Asano, Hanako Naito, Moriyuki Hamada, Hang-Yeon Weon, Soon-Wo Kwon, Jun Heo
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Microcystis pangenome reveals cryptic diversity within and across morphospecies
    Haiyuan Cai, Christopher J. McLimans, Jessica E. Beyer, Lee R. Krumholz, K. David Hambright
    Science Advances.2023;[Epub]     CrossRef
  • Oricola nitratireducens sp. nov., a novel nitrate reducing bacterium isolated from marine sediment in East China Sea
    Chaobo Guo, Xinyu Liu, Feilu Xie, Hong Ding, Shan He, Ning Wang, Weiyan Zhang
    Antonie van Leeuwenhoek.2023; 116(7): 711.     CrossRef
  • Runella salmonicolor sp. nov. and Dyella lutea sp. nov., isolated from paddy field soil
    Sunho Park, Inhyup Kim, Geeta Chhetri, Yoonseop So, Yonghee Jung, Haejin Woo, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Cellulosimicrobium fucosivorans is a later heterotypic synonym of Cellulosimicrobium composti
    Lingmin Jiang, Ho Le Han
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Gymnodinialimonas phycosphaerae sp. nov., a phycosphere bacterium isolated from Karlodinium veneficum
    Yuxin Peng, Lingmin Jiang, Yue Jiang, Jiyoon Seo, Doeun Jeon, Young-Min Kim, Zhun Li, Jiyoung Lee
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Larsenimonas rhizosphaerae sp. nov., isolated from a tidal mudflat
    Soon Dong Lee, In Seop Kim
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Alcanivorax xiamenensis sp. nov., a novel marine hydrocarbonoclastic bacterium isolated from surface seawater
    Qiliang Lai, Xiaoteng Fu, Jianning Wang, Chunming Dong, Liping Wang, Wanpeng Wang, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • High-quality full genome assembly of historic Xylella fastidiosa strains from ICMP collection using a hybrid sequencing approach
    Pragya Kant, Natasha Brohier, Rachel Mann, Luciano Rigano, Robert Taylor, Johanna Wong-Bajracharya, Toni A. Chapman, Monica Kehoe, Rebecca Roach, Brendan Rodoni, Fiona Constable, Vincent Michael Bruno
    Microbiology Resource Announcements.2023;[Epub]     CrossRef
  • Comammox Nitrospira and Ammonia-Oxidizing Archaea Are Dominant Ammonia Oxidizers in Sediments of an Acid Mine Lake Containing High Ammonium Concentrations
    Deyong Li, Zhichang Ren, Yangqi Zhou, Lugao Jiang, Min Zheng, Guoqiang Liu, Jennifer B. Glass
    Applied and Environmental Microbiology.2023;[Epub]     CrossRef
  • Combined Omics Approach Reveals Key Differences between Aerobic and Microaerobic Xylene-Degrading Enrichment Bacterial Communities: Rhodoferax─A Hitherto Unknown Player Emerges from the Microbial Dark Matter
    András Táncsics, Sinchan Banerjee, André Soares, Anna Bedics, Balázs Kriszt
    Environmental Science & Technology.2023; 57(7): 2846.     CrossRef
  • Sinomonas cellulolyticus sp. nov., isolated from Loktak lake
    Lhingjakim L. Khongsai, Jagadeeshwari Uppada, Shabbir Ahamad, Sasikala Chintalapati, Venkata Ramana Chintalapati
    Antonie van Leeuwenhoek.2023; 116(12): 1421.     CrossRef
  • Genomic and metabolic insights into the first host-associated isolate of Psychrilyobacter
    Meijia Liu, Guangshan Wei, Qiliang Lai, Zhaobin Huang, Min Li, Zongze Shao, Konstantinos Aristomenis Kormas, Muhamad Amin, Ruixuan Wang
    Microbiology Spectrum.2023;[Epub]     CrossRef
  • Emergence of Raoultella ornithinolytica in human infections from different hospitals in Ecuador with OXA-48-producing resistance
    José E. Villacís, Hugo G. Castelán-Sánchez, Jorge Rojas-Vargas, Ulises E. Rodríguez-Cruz, Viviana Albán, Jorge A. Reyes, Pablo M. Meza-Rodríguez, Sonia Dávila-Ramos, Fernando Villavicencio, Margarita Galarza, Monica C. Gestal
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Pseudodonghicola flavimaris sp. nov. and Sedimentitalea xiamensis sp. nov., two novel species belonging to the family Roseobacteraceae
    Jiamei Huang, Jianning Wang, Guangyu Li, Qiliang Lai, Xuying Zhu, Shanshan Wang, Xiupian Liu, Zongze Shao, Liping Wang
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Phylogeny and structural insights of lipase from Halopseudomonas maritima sp. nov., isolated from sea sand
    Ritu Rani Archana Kujur, Manisha Ghosh, Surajit Basak, Subrata K. Das
    International Microbiology.2023; 26(4): 1021.     CrossRef
  • Spirosoma oryzicola sp. nov., isolated from dried rice husk
    Miyoung Won, Jun Heo, Hang-Yeon Weon, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Soon-Wo Kwon
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Characterization of metagenome-assembled genomes of two endo-archaea of Candida tropicalis
    Uppada Jagadeeshwari, Chintalapati Sasikala, Anusha Rai, B. Indu, Sahu Ipsita, Chintalapati Venkata Ramana
    Frontiers in Microbiomes.2023;[Epub]     CrossRef
  • Pontibacterium sinense sp. nov., a nitrate-reducing and thiosulphate-oxidizing bacterium, isolated from coastal sediment
    Rui-Ying Chen, Rui-Jie Chen, De-Chen Lu, Ya Gong, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • UACG: Up-to-Date Archaeal Core Genes and Software for Phylogenomic Tree Reconstruction
    Seong-In Na, Michael James Bailey, Mauricio Chalita, Jae Hyoung Cho, Jongsik Chun
    Journal of Microbiology.2023; 61(7): 683.     CrossRef
  • Nocardioides pini sp. nov. and Nocardioides pinisoli sp. nov., two novel actinomycetes isolated from Pinus densiflora
    Yoonseop So, Geeta Chhetri, Inhyup Kim, Sunho Park, Yonghee Jung, Haejin Woo, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology.2023;[Epub]     CrossRef
  • Lacticaseibacillus huelsenbergensis sp. nov., isolated from grass silage and corn silage
    Monika Grabner F., Monika Grabner H., Hermine Schein, Elisabeth Weidenholzer, Tobias Busche, Christian Rückert-Reed, Marlene Buchebner-Jance
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Desulfovibrio mangrovi sp. nov., a sulfate-reducing bacterium isolated from mangrove sediments: a member of the proposed genus “Psychrodesulfovibrio”
    Jinjie Zhou, Cui-Jing Zhang, Meng Li
    Antonie van Leeuwenhoek.2023; 116(6): 499.     CrossRef
  • Devosia oryzisoli sp. nov., a novel moderately halotolerant bacterium isolated from the roots of rice plants and genome mining revealed the biosynthesis potential as plant growth promoter
    Geeta Chhetri, Inhyup Kim, Taegun Seo
    Antonie van Leeuwenhoek.2023; 116(3): 231.     CrossRef
  • Phosphorus Removal and Storage Polymer Synthesis by Tetrasphaera-Related Bacteria with Different Carbon Sources
    Zhaonian Yu, Shaoyi Xu, Peiliang Wang, Dezhao Liu, Huijie Lu
    ACS ES&T Water.2023; 3(5): 1374.     CrossRef
  • Phycobacter azelaicus gen. nov. sp. nov., a diatom symbiont isolated from the phycosphere of Asterionellopsis glacialis
    Lisa S. Y. Coe, Cong Fei, James Weston, Shady A. Amin
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Fluviispira vulneris sp. nov., isolated from human wound secretions
    Peijuan Tang, Na Peng, Pengwen Ouyang, Sheng Long, Zhenhua Wei, Xingchun Chen, Pinghua Qu, Liangyi Xie
    Antonie van Leeuwenhoek.2023; 116(12): 1305.     CrossRef
  • Revisiting the taxonomy of the genus Rhodopirellula with the proposal for reclassification of the genus to Rhodopirellula sensu stricto, Aporhodopirellula gen. nov., Allorhodopirellula gen. nov. and Neorhodopirellula gen. nov
    Pannikurungottu Sreya, Gandham Suresh, Anusha Rai, Biswas Ria, Lakshmanan Vighnesh, Vaibhav Chandrakant Agre, Uppada Jagadeeshwari, Chintalapati Sasikala, Chintalapati Venkata Ramana
    Antonie van Leeuwenhoek.2023; 116(3): 243.     CrossRef
  • Nocardioides cremeus sp. nov., Nocardioides abyssi sp. nov. and Nocardioides oceani sp. nov., three actinobacteria isolated from Western Pacific Ocean sediment
    Wenjing Wang, Yihan Ding, Shiping Wei, Miaomiao Yin, Gaiyun Zhang
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Gracilimonas sediminicola sp. nov., a moderately halotolerant bacterium isolated from seaweed sediment collected in the East Sea, Republic of Korea
    Yunjeong Lee, Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Peptoniphilus equinus sp. nov., a novel Gram-stain-positive anaerobic coccus isolated from the faeces of a thoroughbred racehorse
    Hye Su Jung, Jeong Ui Yun, Mi-Ja Jung, Hye Seon Song, Yeon Bee Kim, Yujin Kim, Joon-Gyu Kim, Che Ok Jeon, Seong Woon Roh, Tae Woong Whon, Se Hee Lee
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Holtiella tumoricola gen. nov. sp. nov., isolated from a human clinical sample
    Emma Allen-Vercoe, Michelle C. Daigneault, Sarah J. Vancuren, Kyla Cochrane, Lindsey L. O’Neal, Krithivasan Sankaranarayanan, Paul A. Lawson
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Gimibacter soli gen. nov. sp. nov., isolated from mangrove soil and insight into its ecological distribution and metabolic potential
    Yang Liu, Tao Pei, Jiao Duan, Juan Du, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Flavobacterium frigoritolerans sp. nov. and Flavobacterium shii sp. nov., isolated from glaciers on the Tibetan Plateau
    Lei-Lei Yang, Hong-Can Liu, Yu-Hua Xin, Qing Liu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Leucobacter edaphi sp. nov., a highly chromate-tolerant bacterium isolated from chromium containing chemical plant soil
    Bijun Zheng, Zhe Xu, Li Yang, Guangyang Jiang, Jia Chen, Yichen Yang, Yongqiang Tian
    Antonie van Leeuwenhoek.2023; 116(12): 1433.     CrossRef
  • Nitratireductor luteus sp. nov. isolated from saline-alkali land
    Xinping Yang, Liuyan Zhou, Xiaowu Wang, Zhifang Wang, Pengbin Li, Jinping Dai, Huitao Zhang, Yuqing Xie
    Antonie van Leeuwenhoek.2023; 116(3): 221.     CrossRef
  • Melaminivora suipulveris sp. nov., isolated from pigpen dust
    Miyoung Won, Jun Heo, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Soon-Wo Kwon
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Trinickia violacea sp. nov. and Trinickia terrae sp. nov., isolated from forest soil
    Zeng-hong Gao, Xiu-yin Guo, Yi-zhi Liu, Qiu-mei Zhang, Xin-jie Tong, Li-hong Qiu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Polycladospora coralii gen. nov., sp. nov., a novel member of the family Thermoactinomycetaceae isolated from stony coral in the South China Sea
    Kunlian Mo, Huiqin Huang, Lin Ye, Qingjuan Wu, Yong hua Hu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Comparative genomics and transcriptomics insight into myxobacterial metabolism potentials and multiple predatory strategies
    Chunling Wang, Yi Xiao, Yong Wang, Yumin Liu, Qing Yao, Honghui Zhu
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Acinetobacter thutiue sp. nov. Isolated from Oil-Contaminated Soil in Motorbike Repair Workshops
    Nhan Le Thi Tuyet, Jaisoo Kim
    Diversity.2023; 15(12): 1179.     CrossRef
  • Chryseobacterium edaphi sp. nov. and Chryseobacterium gilvum sp. nov., isolated from soil
    Yonghee Jung, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Haejin Woo, Ki-Ho Lee, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Ten Novel Species Belonging to the Genus Flavobacterium, Isolated from Freshwater Environments: F. praedii sp. nov., F. marginilacus sp. nov., F. aestivum sp. nov., F. flavigenum sp. nov., F. luteolum sp. nov., F. gelatinilyticum sp. nov., F. aquiphilum s
    Hyunyoung Jo, Miri S. Park, Yeonjung Lim, Ilnam Kang, Jang-Cheon Cho
    Journal of Microbiology.2023; 61(5): 495.     CrossRef
  • Description of Flavobacterium agricola sp. nov., an auxin producing bacterium isolated from paddy field
    Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Chiu-Chung Young
    Antonie van Leeuwenhoek.2023; 116(12): 1345.     CrossRef
  • Blastopirellula sediminis sp. nov. a new member of Pirellulaceae isolated from the Andaman and Nicobar Islands
    P. K. Sreya, Kumar Gaurav, Shabbir Ahmed, Chintalapati Sasikala, Chintalapati Venkata Ramana
    Antonie van Leeuwenhoek.2023; 116(5): 463.     CrossRef
  • Macromonas nakdongensis sp. nov., Isolated from Freshwater and Characterization of Bacteriophage BK-30P—The First Phage That Infects Genus Macromonas
    Kiwoon Baek, Ahyoung Choi
    Microorganisms.2023; 11(9): 2237.     CrossRef
  • Sphingomonas lycopersici sp. nov., isolated from tomato rhizosphere soil
    Ruixiang Gao, Honghong Dong, Yang Liu, Qing Yao, Huaping Li, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Staphylococcus brunensis sp. nov. isolated from human clinical specimens with a staphylococcal cassette chromosome-related genomic island outside of the rlmH gene bearing the ccrDE r
    Vojtěch Kovařovic, Adéla Finstrlová, Ivo Sedláček, Petr Petráš, Pavel Švec, Ivana Mašlaňová, Meina Neumann-Schaal, Ondrej Šedo, Tibor Botka, Eva Staňková, Jiří Doškař, Roman Pantůček, Shannon D. Manning
    Microbiology Spectrum.2023;[Epub]     CrossRef
  • The Raphidiopsis (= Cylindrospermopsis) raciborskii pangenome updated: Two new metagenome-assembled genomes from the South American clade
    Marcele Laux, Carlos Morais Piroupo, João Carlos Setubal, Alessandra Giani
    Harmful Algae.2023; 129: 102518.     CrossRef
  • Marivirga aurantiaca sp. nov., a halophilic nitrite-reducing bacterium, isolated from intertidal surface sediments
    Mingxia Zhang, Yulian Zhang, Qing Yao, Fan Yang, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Agromyces chromiiresistens sp. nov., Novosphingobium album sp. nov., Sphingobium arseniciresistens sp. nov., Sphingomonas pollutisoli sp. nov., and Salinibacterium metalliresistens sp. nov.: five new members of Microbacteriaceae and Sphingomonadaceae from
    Ze-Shen Liu, Ke-Huan Wang, Man Cai, Mei-Ling Yang, Xiao-Kang Wang, Hong-Lin Ma, Yi-Han Yuan, Lin-Huan Wu, De-Feng Li, Shuang-Jiang Liu
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Sphingomonas oryzagri sp. nov., isolated from a rice field
    Md. Amdadul Huq, Sun-Young Lee, Md. Shahedur Rahman, Shahina Akter
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Tsuneonella litorea sp. nov., a novel carotenoid-producing bacterium isolated from coastal sediment
    Yizhou He, Yang Liu, Tao Pei, Jiao Duan, Juan Du, Xiaoqin Deng, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Gramella oceanisediminis sp. nov., isolated from deep-sea sediment of the Indian Ocean
    Lin Yang, Haolei Shi, Qian Li, Minggang Zheng, Qiliang Lai, Li Zheng
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Pseudomonas petrae sp. nov. isolated from regolith samples in Antarctica
    Dana Nováková, Vendula Koublová, Karel Sedlář, Eva Staňková, Stanislava Králová, Pavel Švec, Meina Neumann-Schaal, Jacqueline Wolf, Sylva Koudelková, Miloš Barták, Ivo Sedláček
    Systematic and Applied Microbiology.2023; 46(4): 126424.     CrossRef
  • Paraflavisolibacter caeni gen. nov., sp. nov., a novel taxon within the family Chitinophagaceae isolated from sludge
    Cansheng Yuan, Bin Liu, Lin Wang, Weihua Long, Zhuang Ke, Jian He
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Shimia ponticola sp. nov., an aerobic anoxygenic photoheterotrophic bacterium, isolated from surface seawater in the South China Sea
    Qi Chen, Bowen He, Ta-Hui Lin, Nianzhi Jiao, Qiang Zheng
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • From sequences to species: Charting the phytoplasma classification and taxonomy in the era of taxogenomics
    Kiran Kirdat, Bhavesh Tiwarekar, Shivaji Sathe, Amit Yadav
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Thermobacterium salinum gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a hydrothermal zone
    Beihan Chen, Haichen Zhang, Dan Lin, Jianing Ye, Kai Tang
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Phenotypic and Genomic Characterization of Streptomyces pakalii sp. nov., a Novel Species with Anti-Biofilm and Anti-Quorum Sensing Activity in ESKAPE Bacteria
    Michelle Chávez-Hernández, Jossue Ortiz-Álvarez, Jesús Morales-Jiménez, Lourdes Villa-Tanaca, César Hernández-Rodríguez
    Microorganisms.2023; 11(10): 2551.     CrossRef
  • Dyella humicola sp. nov., Dyella subtropica sp. nov., Dyella silvatica sp. nov. and Dyella silvae sp. nov., isolated from subtropical forest soil
    Guang-Da Feng, Xiaoqin Deng, Jiali Li, Wendi Chen, Xianjiao Zhang, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Hufsiella ginkgonis gen. nov., sp. nov. and Hufsiella arboris sp. nov., isolated from tree barks
    Heeyoung Kang, Seokhyeon Bae, Haneul Kim, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Description ofDefluviimonas salinarumsp. nov. with the potential of benzene-degradation isolated from saltern in the Yellow Seacoast
    Yunjeong Lee, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
    FEMS Microbiology Letters.2023;[Epub]     CrossRef
  • Genomic potential for inorganic carbon sequestration and xenobiotic degradation in marine bacterium Youngimonas vesicularis CC-AMW-ET affiliated to family Paracoccaceae
    Asif Hameed, Kokkarambath Vannadil Suchithra, Shih-Yao Lin, Paul Stothard, Chiu-Chung Young
    Antonie van Leeuwenhoek.2023; 116(11): 1247.     CrossRef
  • Polyphasic Characterization and Genomic Insights into an Aerobic Denitrifying Bacterium, Shewanella zhuhaiensis sp. nov., Isolated from a Tidal Flat Sediment
    Yang Liu, Tao Pei, Juan Du, Honghui Zhu
    Microorganisms.2023; 11(12): 2870.     CrossRef
  • Pseudomonas quebecensis sp. nov., a bacterium isolated from root-zone soil of a native legume, Amphicarpaea bracteata (L.) Fernald, in Quebec, Canada
    James T. Tambong, Renlin Xu, Sylvia I. Chi, Isabelle Birugu, Sylvia Bachelet, Conrad Hutter, Marc-Olivier Duceppe, Stephan Brière
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Taxogenomics of Alkalihalobacterium chitinilyticum sp. nov.: an alkaliphilic chitin degrading bacterial strain isolated from Lonar Lake, India, with potential biotechnological applications
    Sonia Thite, Kamakshi Tarwadge, Purva Mengade, Tushar Lodha, Neetha Joseph, Lucky Thakkar, Amaraja Joshi
    Antonie van Leeuwenhoek.2023; 116(11): 1103.     CrossRef
  • Characterization of two novel chemolithoautotrophic bacteria of Sulfurovum from marine coastal environments and further comparative genomic analyses revealed species differentiation among deep-sea hydrothermal vent and non-vent origins
    Jun Wang, Qiang Zheng, Shasha Wang, Jialing Zeng, Qing Yuan, Yangsheng Zhong, Lijing Jiang, Zongze Shao
    Frontiers in Marine Science.2023;[Epub]     CrossRef
  • Pseudomonas citri sp. nov., a potential novel plant growth promoting bacterium isolated from rhizosphere soil of citrus
    Hong Gao, Guang-Da Feng, Zengwei Feng, Qing Yao, Jiali Li, Xiaoqin Deng, Xiaoran Li, Honghui Zhu
    Antonie van Leeuwenhoek.2023; 116(3): 281.     CrossRef
  • Pontibacter liquoris sp. nov. and Pontibacter vulgaris sp. nov., two novel bacteria isolated from the pit mud of Chinese liquor
    Chaobo Guo, Haohao Wang, Xinyu Liu, Yifan Guo, Shan He, Lijian Ding, Weiyan Zhang
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Pseudophaeobacter profundi sp. nov., isolated from the Western Pacific Ocean
    Xuying Zhu, Liping Wang, Qiliang Lai, Jianning Wang, Jiamei Huang, Guangyu Li, Lingyu Zeng, Jingyu Xia, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Physiological and genomic analyses of cobalamin (vitamin B12)-auxotrophy of Lysobacter auxotrophicus sp. nov., a methionine-auxotrophic chitinolytic bacterium isolated from chitin-treated soil
    Akihiro Saito, Hideo Dohra, Moriyuki Hamada, Ryota Moriuchi, Yohei Kotsuchibashi, Koji Mori
    International Journal of Systematic and Evolutionary Microbiology .2023;[Epub]     CrossRef
  • Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
    Cale O. Seymour, Marike Palmer, Eric D. Becraft, Ramunas Stepanauskas, Ariel D. Friel, Frederik Schulz, Tanja Woyke, Emiley Eloe-Fadrosh, Dengxun Lai, Jian-Yu Jiao, Zheng-Shuang Hua, Lan Liu, Zheng-Han Lian, Wen-Jun Li, Maria Chuvochina, Brianna K. Finley
    Nature Microbiology.2023; 8(4): 727.     CrossRef
  • Genome-resolved metagenomics provides insights into the microbial-mediated sulfur and nitrogen cycling in temperate seagrass meadows
    Pengyuan Liu, Songbao Zou, Haikun Zhang, Qing Liu, Zenglei Song, Yanyan Huang, Xiaoke Hu
    Frontiers in Marine Science.2023;[Epub]     CrossRef
  • ComammoxNitrospirabacteria outnumber canonical nitrifiers irrespective of electron donor mode and availability in biofiltration systems
    Katherine J Vilardi, Irmarie Cotto, Maria Sevillano, Zihan Dai, Christopher L Anderson, Ameet Pinto
    FEMS Microbiology Ecology.2022;[Epub]     CrossRef
  • Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-β-mannans
    Marcele P. Martins, Mariana A. B. Morais, Gabriela F. Persinoti, Rafael H. Galinari, Li Yu, Yoshihisa Yoshimi, Fernanda B. Passos Nunes, Tatiani B. Lima, Shayla F. Barbieri, Joana L. M. Silveira, Vincent Lombard, Nicolas Terrapon, Paul Dupree, Bernard Hen
    Acta Crystallographica Section D Structural Biology.2022; 78(11): 1358.     CrossRef
  • Alexandriicola marinus gen. nov., sp. nov., a new member of the family Rhodobacteraceae isolated from marine phycosphere
    Wen-Zhuo Zhu, Hui-Min Gao, Ya-Ming Ge, Jun Dai, Xi Yang, Xiao-Ling Zhang, Qiao Yang
    Antonie van Leeuwenhoek.2022; 115(4): 473.     CrossRef
  • In silico, in vitro and in vivo safety evaluation of Limosilactobacillus reuteri strains ATCC PTA-126787 & ATCC PTA-126788 for potential probiotic applications
    Dharanesh Gangaiah, Shrinivasrao P. Mane, Nilesh R. Tawari, Nallakannu Lakshmanan, Valerie Ryan, Alyssa Volland, Dwi Susanti, Milind Patel, Abraham Abouzeid, Emily B. Helmes, Arvind Kumar, Konstantinos Papadimitriou
    PLOS ONE.2022; 17(1): e0262663.     CrossRef
  • Alicyclobacillus curvatus sp. nov. and Alicyclobacillus mengziensis sp. nov., two acidophilic bacteria isolated from acid mine drainage
    Zhen Jiang, Dildar Wu, Zong-Lin Liang, Xiu-Tong Li, Ye Huang, Nan Zhou, Zheng-Hua Liu, Guang-Ji Zhang, Yan Jia, Hua-Qun Yin, Shuang-Jiang Liu, Cheng-Ying Jiang
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Genome-based taxonomic classification of the closest-to-Comamonadaceae group supports a new family Sphaerotilaceae fam. nov. and taxonomic revisions
    Yang Liu, Juan Du, Tao Pei, Hanqin Du, Guang-Da Feng, Honghui Zhu
    Systematic and Applied Microbiology.2022; 45(6): 126352.     CrossRef
  • Paraphocaeicola brunensis gen. nov., sp. nov., Carrying Two Variants of nimB Resistance Gene from Bacteroides fragilis, and Caecibacteroides pullorum gen. nov., sp. nov., Two Novel G
    Stanislava Kralova, Lenka Davidova-Gerzova, Adam Valcek, Matej Bezdicek, Ivan Rychlik, Veronika Rezacova, Alois Cizek, Jeffrey A. Gralnick
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Antrihabitans stalagmiti sp. nov., isolated from a larva cave and a proposal to transfer Rhodococcus cavernicola Lee et al. 2020 to a new genus Spelaeibacter as Spelaeibacter cavernicola gen. nov. comb. nov
    Sung-Min Kim, Soon Dong Lee, Young Sang Koh, In Seop Kim
    Antonie van Leeuwenhoek.2022; 115(4): 521.     CrossRef
  • Sphingopyxis lutea sp. nov., a novel moderately halotolerant bacterium isolated from pebbles
    Geeta Chhetri, Inhyup Kim, Taegun Seo
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Nocardioides nematodiphilus sp. nov., isolated from rhizosphere of Arabidopsis thaliana
    Xue-Mei Zhang, Wan-Ting Mo, Yu-Qian Wei, Xin Li, Gui-Mei Ma, Yu-Sen Yang, Xue-Jian Wang, Jian-Jin Liu, Zi-Yi Liu, Xing-Kui Zhou, Ti-Kun Zhang
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Sedimentimonas flavescens gen. nov., sp. nov., isolated from sediment of Clam Island, Liaoning Province
    Lulu Mu, Xueping Zhang, Yanfeng Zhang, Zemin Fang, Yazhong Xiao
    Antonie van Leeuwenhoek.2022; 115(8): 979.     CrossRef
  • Pseudomonas oligotrophica sp. nov., a Novel Denitrifying Bacterium Possessing Nitrogen Removal Capability Under Low Carbon–Nitrogen Ratio Condition
    Mingxia Zhang, Anzhang Li, Qing Yao, Botao Xiao, Honghui Zhu
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Panacibacter microcysteis sp. nov., isolated from a eutrophic reservoir during the Microcystis bloom period
    Ve Van Le, So-Ra Ko, Mingyeong Kang, Sang-Ah Lee, Hee-Mock Oh, Chi-Yong Ahn
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Ruegeria alba sp. nov., Isolated from a Tidal Flat Sediment
    Juan Du, Yang Liu, Tao Pei, Anzhang Li, Honghui Zhu
    Current Microbiology.2022;[Epub]     CrossRef
  • Larkinella humicola sp. nov., a gamma radiation-resistant bacterium isolated from soil
    Yuna Park, Leonid N. Ten, Young Koung Lee, Hee‑Young Jung, Myung Kyum Kim
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Oral and gut dysbiosis leads to functional alterations in Parkinson’s disease
    Sungyang Jo, Woorim Kang, Yun Su Hwang, Seung Hyun Lee, Kye Won Park, Mi Sun Kim, Hyunna Lee, Hyung Jeong Yoon, Yoo Kyoung Park, Mauricio Chalita, Je Hee Lee, Hojun Sung, Jae-Yun Lee, Jin-Woo Bae, Sun Ju Chung
    npj Parkinson's Disease.2022;[Epub]     CrossRef
  • Colwellia maritima sp. nov. and Polaribacter marinus sp. nov., isolated from seawater
    Sylvia Kristyanto, Jaejoon Jung, Jeong Min Kim, Keunpil Kim, Mi-hwa Lee, Lujiang Hao, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Hymenobacter translucens sp. nov. and Hymenobacter pini sp. nov. isolated from soil
    Minji Bang, Myung Kyum Kim, Hee‑Young Jung
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Chryseobacterium subflavum sp. nov., isolated from soil
    Delong Kong, Yan Wang, Qingqing Li, Yanzheng Zhou, Xu Jiang, Zhen Xing, Zhiye Wang, Zhiyong Ruan
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Acetobacter vaccinii sp. nov., a novel acetic acid bacterium isolated from blueberry fruit (Vaccinium corymbosum L.)
    Jun Heo, Atena Sadat Sombolestani, David Laureys, Jessika De Clippeleer, Miyoung Won, Peter Vandamme, Soon-Wo Kwon
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Neotabrizicola shimadae gen. nov., sp. nov., an aerobic anoxygenic phototrophic bacterium harbouring photosynthetic genes in the family Rhodobacteraceae, isolated from a terrestrial hot spring
    So Muramatsu, Setsuko Hirose, Takao Iino, Moriya Ohkuma, Satoshi Hanada, Shin Haruta
    Antonie van Leeuwenhoek.2022; 115(6): 731.     CrossRef
  • Pedomonas mirosovicensis gen. nov., sp. nov., a bacterium isolated from soil with the aid of Micrococcus luteus culture supernatant containing resuscitation-promoting factor
    Marco A. Lopez Marin, Jachym Suman, Kunal Jani, Pavel Ulbrich, Tomas Cajthaml, Petr Pajer, Jacqueline Wolf, Meina Neumann-Schaal, Michal Strejcek, Ondrej Uhlik
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Streptococcus oriscaviae sp. nov. Infection Associated with Guinea Pigs
    Jade L. L. Teng, Yuanchao Ma, Jonathan H. K. Chen, Ruibang Luo, Chuen-Hing Foo, Tsz Tuen Li, Jordan Y. H. Fong, Weiming Yao, Samson S. Y. Wong, Kitty S. C. Fung, Susanna K. P. Lau, Patrick C. Y. Woo, Jasna Kovac
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Paracidobacterium acidisoli gen. nov., sp. nov. and Alloacidobacterium dinghuense gen. nov., sp. nov., two acidobacteria isolated from forest soil, and reclassification of Acidobacterium ailaaui and Acidipila dinghuensis as Pseudacidobacteriu
    Qiu-mei Zhang, Jia-cheng Fu, Zhi-qin Chen, Li-hong Qiu
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Non‐ribosomal peptide biosynthetic potential of the nematode symbiont Photorhabdus
    Ao‐Qi Du, Ti‐Ti Ying, Zhen‐Yi Zhou, Wen‐Chao Yu, Gang‐Ao Hu, Xian Luo, Man‐Jing Ma, Yan‐Lei Yu, Hong Wang, Bin Wei
    Environmental Microbiology Reports.2022; 14(6): 917.     CrossRef
  • Chryseobacterium oryzae sp. nov. and Chryseobacterium suipulveris sp. nov., isolated from Andong sikhye and pigpen dust, respectively
    Jun Heo, Miyoung Won, Daseul Lee, Jeong-Seon Kim, Byeong-Hak Han, Soo-Jin Kim, Seung-Beom Hong, Soon-Wo Kwon
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Metagenomic evidence of a novel family of anammox bacteria in a subsea environment
    Carolina Suarez, Paula Dalcin Martins, Mike S.M. Jetten, Sabina Karačić, Britt Marie Wilén, Oskar Modin, Per Hagelia, Malte Hermansson, Frank Persson
    Environmental Microbiology.2022; 24(5): 2348.     CrossRef
  • Evolutionary Principles of Bacterial Signaling Capacity and Complexity
    Ran Mo, Yugeng Liu, Yuanyuan Chen, Yingjin Mao, Beile Gao, Qijing Zhang
    mBio.2022;[Epub]     CrossRef
  • Pseudomonas phenolilytica sp. nov., a novel phenol-degrading bacterium
    Ritu Rani Archana Kujur, Subrata K. Das
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Pontibacter pamirensis sp. nov., isolated from saline-alkaline soil
    Fang Liu, Yang-Yang Liu, Yu-Qian Li, Rui-Feng Lei, Qin Ma, Dilireba Abudourousuli, Zulihumaer Rouzi, Muyesaier Aosiman, Deng-Di An, Wen-Jun Li
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Limosilactobacillus reuteri DS0384 promotes intestinal epithelial maturation via the postbiotic effect in human intestinal organoids and infant mice
    Hana Lee, Kwang Bo Jung, Ohman Kwon, Ye Seul Son, Eunho Choi, Won Dong Yu, Naeun Son, Jun Hyoung Jeon, Hana Jo, Haneol Yang, Yeong Rak Son, Chan-Seok Yun, Hyun-Soo Cho, Sang Kyu Kim, Dae-Soo Kim, Doo-Sang Park, Mi-Young Son
    Gut Microbes.2022;[Epub]     CrossRef
  • Some like it cold: the cellular organization and physiological limits of cold‐tolerant nitrite‐oxidizing Nitrotoga
    Sabine Keuter, Hanna Koch, Katharina Sass, Simone Wegen, Natuschka Lee, Sebastian Lücker, Eva Spieck
    Environmental Microbiology.2022; 24(4): 2059.     CrossRef
  • Horticoccus luteus gen. nov., sp. nov., A Novel Member of the Phylum Verrucomicrobia Isolated from a Dichlorodiphenyltrichloroethane (DDT)-Contaminated Orchard Soil
    Joon-hui Chung, Ja-Yeon Lee, Geun-Hyung Choi, Miyoung Won, Jehyeong Yeon, Younggun Yoon, Si-Hyun An, Da-Yeon Kim, InCheol Park, Ye-eun Kim, Jae-Hyung Ahn
    Current Microbiology.2022;[Epub]     CrossRef
  • Burkholderia orbicola sp. nov., a novel species within the Burkholderia cepacia complex
    Leslie-Mariana Morales-Ruíz, Mariana Rodríguez-Cisneros, Jeniffer-Chris Kerber-Díaz, Fernando-Uriel Rojas-Rojas, J. Antonio Ibarra, Paulina Estrada-de los Santos
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Assessing the utility of mitochondrial gene markers in the family Suessiaceae (Dinophyta) with phylogenomic validation
    Se Hyeon Jang, Seong In Na, Moo Joon Lee, Yeong Du Yoo
    Molecular Phylogenetics and Evolution.2022; 177: 107625.     CrossRef
  • Taxonomic and Bioactivity Characterizations of Mameliella alba Strain LZ-28 Isolated from Highly Toxic Marine Dinoflagellate Alexandrium catenella LZT09
    Cheng-Zhe Ren, Hui-Min Gao, Jun Dai, Wen-Zhuo Zhu, Fei-Fei Xu, Yun Ye, Xiao-Ling Zhang, Qiao Yang
    Marine Drugs.2022; 20(5): 321.     CrossRef
  • Nocardioides panacis sp. nov., isolated from soil of a ginseng field
    Yuna Park, Qingzhen Liu, Soohyun Maeng, Won Jung Choi, Yoonjee Chang, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Water quality drives the distribution of freshwater cable bacteria
    Meijun Dong, Shan Yang, Xunan Yang, Meiying Xu, Wenzhe Hu, Bin Wang, Youda Huang, Jiarou Xu, Huibin Lu, Yonggang Yang, Xingjuan Chen, Haobin Huang, Guoping Sun
    Science of The Total Environment.2022; 841: 156468.     CrossRef
  • Vibrio ostreae sp. nov., a novel gut bacterium isolated from a Yellow Sea oyster
    Neak Muhammad, Tra T.H. Nguyen, Yong-Jae Lee, Jaeho Ko, Forbes Avila, Song-Gun Kim
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Flavobacterium endoglycinae sp. nov., an endophytic bacterium isolated from soybean (Glycine max L. cv. Gwangan) stems
    Jiyoon Seo, Yuxin Peng, Lingmin Jiang, Sang-Beom Lee, Rae-Dong Jeong, Soon Ju Park, Cha Young Kim, Man-Soo Choi, Jiyoung Lee
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Draft Genome Sequence of Methanobacterium paludis IBT-C12, Recovered from Sediments of the Apatlaco River, Mexico
    Erick Alejandro Sánchez-Salazar, Lizbeth Hernández-Jaimes, Luz Breton-Deval, Ayixon Sánchez-Reyes, Frank J. Stewart
    Microbiology Resource Announcements.2022;[Epub]     CrossRef
  • Successful Direct Whole Genome Sequencing and Revivification of Freeze-Dried Nontuberculous Mycobacteria after More than Half a Century of Storage
    Xenia Emilie Sinding Iversen, Anders Norman, Dorte Bek Folkvardsen, Erik Svensson, Erik Michael Rasmussen, Troels Lillebaek, Sébastien P. Faucher
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Bacterial filamentation as a mechanism for cell-to-cell spread within an animal host
    Tuan D. Tran, Munira Aman Ali, Davin Lee, Marie-Anne Félix, Robert J. Luallen
    Nature Communications.2022;[Epub]     CrossRef
  • Greater functional diversity and redundancy of coral endolithic microbiomes align with lower coral bleaching susceptibility
    Anny Cárdenas, Jean-Baptiste Raina, Claudia Pogoreutz, Nils Rädecker, Jeremy Bougoure, Paul Guagliardo, Mathieu Pernice, Christian R Voolstra
    The ISME Journal.2022; 16(10): 2406.     CrossRef
  • Comparative Genomics Reveal the Animal-Associated Features of the Acanthopleuribacteraceae Bacteria, and Description of Sulfidibacter corallicola gen. nov., sp., nov.
    Guanghua Wang, Yuanjin Li, Jianfeng Liu, Biao Chen, Hongfei Su, Jiayuan Liang, Wen Huang, Kefu Yu
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Dyella sedimenti sp. nov., Isolated from the Sediment of a Winery
    Li Gao, Yuan-Dong Li, Xing-Kui Zhou, Xiu-Ming Liu, Hui-Tian Li, Wen-Jun Li, Yan-Qing Duan
    Current Microbiology.2022;[Epub]     CrossRef
  • Arenibacterium arenosum sp. nov., isolated from sea sand
    Jiseon Jeong, Veeraya Weerawongwiwat, Jong-Hwa Kim, Min Kuk Suh, Han Sol Kim, Jung-Sook Lee, Jung-Hoon Yoon, Ampaitip Sukhoom, Wonyong Kim
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Gordonia pseudamarae sp. nov., a home for novel actinobacteria isolated from stable foams on activated sludge wastewater treatment plants
    Raúl Riesco, Jayson J. A. Rose, Steven Batinovic, Steve Petrovski, Fernando Sánchez-Juanes, Robert J. Seviour, Michael Goodfellow, Martha E. Trujillo
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Predicting butyrate- and propionate-forming bacteria of gut microbiota from sequencing data
    Berenike Kircher, Sabrina Woltemate, Frank Gutzki, Dirk Schlüter, Robert Geffers, Heike Bähre, Marius Vital
    Gut Microbes.2022;[Epub]     CrossRef
  • Kaistella soli sp. nov., isolated from oil-contaminated experimental soil
    Dhiraj Kumar Chaudhary, Ram Hari Dahal, Joung-Ho Park, Yongseok Hong
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Halomonas salinarum sp. nov., a moderately halophilic bacterium isolated from saline soil in Yingkou, China
    Ya-Lin Yin, Fang-Ling Li, Lei Wang
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Neoroseomonas marina sp. nov., Isolated from a Beach Sand
    Anusha Rai, Jagadeeshwari Uppada, Deepshikha Gupta, Smita Nandardhane, Ipsita Sahu, Sasikala Chintalapati, Venkata Ramana Chintalapati
    Current Microbiology.2022;[Epub]     CrossRef
  • Paenibacillus albicereus sp. nov. and Niallia alba sp. nov., isolated from digestive syrup
    Vipool Thorat, Kiran Kirdat, Bhavesh Tiwarekar, Priyanka Dhanavade, Prachi Karodi, Yogesh Shouche, Shivaji Sathe, Tushar Lodha, Amit Yadav
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Identification of Mucilaginibacter conchicola sp. nov., Mucilaginibacter achroorhodeus sp. nov. and Mucilaginibacter pallidiroseus sp. nov. and emended description of the genus Mucilaginibacter
    Jiyoun Kim, Byungjo Lee, Geeta Chhetri, Inhyup Kim, Yoonseop So, Wonhee Jang, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Pusillimonas faecipullorum sp. nov., isolated from the poultry manure
    Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Yu-Shan Tang, Chiu-Chung Young
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Unveiling the genomic potential of Pseudomonas type strains for discovering new natural products
    Zaki Saati-Santamaría, Nelly Selem-Mojica, Ezequiel Peral-Aranega, Raúl Rivas, Paula García-Fraile
    Microbial Genomics .2022;[Epub]     CrossRef
  • A genomic overview including polyphasic taxonomy of Thalassoroseus pseudoceratinae gen. nov., sp. nov. isolated from a marine sponge, Pseudoceratina sp.
    Gaurav Kumar, Uppada Jagadeeshwari, Pannikurungottu Sreya, Ahmed Shabbir, Chintalapati Sasikala, Chintalapati Venkata Ramana
    Antonie van Leeuwenhoek.2022; 115(7): 843.     CrossRef
  • Novosphingobium percolationis sp. nov. and Novosphingobium huizhouense sp. nov., isolated from landfill leachate of a domestic waste treatment plant
    Xiaoling He, Huibin Lu, Wenzhe Hu, Tongchu Deng, Xiaofan Gong, Xunan Yang, Da Song, Mei He, Meiying Xu
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Development of a Novel Real-Time Polymerase Chain Reaction Assay to DetectEscherichia albertiiin Chicken Meat
    Sakura Arai, Tadasuke Ooka, Mizuha Shibata, Yuhki Nagai, Yuki Tokoi, Hiromi Nagaoka, Rika Maeda, Akihiko Tsuchiya, Yuka Kojima, Kenji Ohya, Takahiro Ohnishi, Noriko Konishi, Kayoko Ohtsuka, Yukiko Hara-Kudo
    Foodborne Pathogens and Disease.2022; 19(12): 823.     CrossRef
  • Psychroflexus curvus sp. nov., Psychroflexus longus sp. nov. and Psychroflexus montanilacus sp. nov., isolated from salt lakes on the Tibetan Plateau
    Huibin Lu, Peixin Gao, Dorji Phurbu, Qinglong Wu, Peng Xing
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Tumebacillus amylolyticus sp. nov., isolated from garden soil in Korea
    Minchung Kang, Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Yoonseop So, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Description of Polaribacter batillariae sp. nov., Polaribacter cellanae sp. nov., and Polaribacter pectinis sp. nov., novel bacteria isolated from the gut of three types of South Korean shellfish
    Su-Won Jeong, Jeong Eun Han, June-Young Lee, Ji-Ho Yoo, Do-Yeon Kim, In Chul Jeong, Jee-Won Choi, Yun-Seok Jeong, Jae-Yun Lee, So-Yeon Lee, Euon Jung Tak, Hojun Sung, Hyun Sik Kim, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
    Journal of Microbiology.2022; 60(6): 576.     CrossRef
  • Survival strategy of comammox bacteria in a wastewater nutrient removal system with sludge fermentation liquid as additional carbon source
    Shaoyi Xu, Wenbo Chai, Rui Xiao, Barth F. Smets, Alejandro Palomo, Huijie Lu
    Science of The Total Environment.2022; 802: 149862.     CrossRef
  • Hymenobacter armeniacus sp. nov. and Hymenobacter montanus sp. nov., two radiation-resistant bacteria from soil
    Yuna Park, Yoonjee Chang, Myung Kyum Kim
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Hymenobacter telluris sp. nov., isolated from soil in South Korea
    Tuvshinzaya Damdintogtokh, Yuna Park, Soohyun Maeng, Hye Jin Oh, Minji Bang, Young Koung Lee, Jaesung Oh, Jaewoo Bai, Myung Kyum Kim
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Ferruginibacter albus sp. nov., isolated from a mountain soil, and Mucilaginibacter robiniae sp. nov., isolated from a black locust flower, Robinia pseudoacacia
    Miyoung Won, Hang-Yeon Weon, Jun Heo, Daseul Lee, Byeong-Hak Han, Seung-Beom Hong, Soon-Wo Kwon
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Beyond the ABCs—Discovery of Three New Plasmid Types in Rhodobacterales (RepQ, RepY, RepW)
    Heike M. Freese, Victoria Ringel, Jörg Overmann, Jörn Petersen
    Microorganisms.2022; 10(4): 738.     CrossRef
  • Comparative Genomic Analyses of the Genus Photobacterium Illuminate Biosynthetic Gene Clusters Associated with Antagonism
    Nyok-Sean Lau, Wooi Liang Heng, Noorizan Miswan, Nor Azura Azami, Go Furusawa
    International Journal of Molecular Sciences.2022; 23(17): 9712.     CrossRef
  • Comparative Genomic Analysis of Fusobacterium necrophorum Provides Insights into Conserved Virulence Genes
    Prabha K. Bista, Deepti Pillai, Chayan Roy, Joy Scaria, Sanjeev K. Narayanan, Philip N. Rather
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Shewanella sp. T2.3D-1.1 a Novel Microorganism Sustaining the Iron Cycle in the Deep Subsurface of the Iberian Pyrite Belt
    Guillermo Mateos, Adrián Martínez Bonilla, Sofía de Francisco de Polanco, José M. Martínez, Cristina Escudero, Nuria Rodríguez, Irene Sánchez-Andrea, Ricardo Amils
    Microorganisms.2022; 10(8): 1585.     CrossRef
  • Devosia rhizoryzae sp. nov., and Devosia oryziradicis sp. nov., novel plant growth promoting members of the genus Devosia, isolated from the rhizosphere of rice plants
    Geeta Chhetri, Inhyup Kim, Minchung Kang, Jiyoun Kim, Yoonseop So, Taegun Seo
    Journal of Microbiology.2022; 60(1): 1.     CrossRef
  • Nocardioides carbamazepini sp. nov., an ibuprofen degrader isolated from a biofilm bacterial community enriched on carbamazepine
    Tibor Benedek, Márton Pápai, Kholood Gharieb, Anna Bedics, András Táncsics, Erika Tóth, Hussein Daood, Gergely Maróti, Roland Wirth, Ofir Menashe, Károly Bóka, Balázs Kriszt
    Systematic and Applied Microbiology.2022; 45(4): 126339.     CrossRef
  • Agrilactobacillus fermenti sp. nov. isolated from fermented vegetable residue
    Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Mei-Hua Hung, Chiu-Chung Young
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Genomic Insights into the Radiation-Resistant Capability of Sphingomonas qomolangmaensis S5-59T and Sphingomonas glaciei S8-45T, Two Novel Bacteria from the North Slope of Mount Everest
    Yang Liu, Xiaowen Cui, Ruiqi Yang, Yiyang Zhang, Yeteng Xu, Guangxiu Liu, Binglin Zhang, Jinxiu Wang, Xinyue Wang, Wei Zhang, Tuo Chen, Gaosen Zhang
    Microorganisms.2022; 10(10): 2037.     CrossRef
  • In silico, in vitro and in vivo characterization of host-associated Latilactobacillus curvatus strains for potential probiotic applications in farmed Atlantic salmon (Salmo salar)
    Hannah S. Cathers, Shrinivasrao P. Mane, Nilesh R. Tawari, Jayanth Balakuntla, Germán Plata, Madan Krishnamurthy, Alicia MacDonald, Marilyn Wolter, Niel Baxter, Julian Briones, Akshitha Nagireddy, Gregory Millman, Roberto E. Martin, Arvind Kumar, Dharanes
    Scientific Reports.2022;[Epub]     CrossRef
  • Rahnella sikkimica sp. nov., a novel cold-tolerant bacterium isolated from the glacier of Sikkim Himalaya with plant growth-promoting properties
    Anil Kumar, Anne Le Flèche-Matéos, Rakshak Kumar, Fabienne Lomprez, Frédéric Fichenick, Dharam Singh, Patrick A. D. Grimont, Sanjay Kumar
    Extremophiles.2022;[Epub]     CrossRef
  • Hydrogenophaga crocea sp. nov. associated with cyanobacterial mat isolated from farmland mud
    Vipool Thorat, Bhavesh Tiwarekar, Kiran Kirdat, Saurabhee Chavan, Shital Markad, Shivaji Sathe, Tushar Lodha, Amit Yadav
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Genome mining revealed polyhydroxybutyrate biosynthesis by Ramlibacter agri sp. nov., isolated from agriculture soil in Korea
    Ram Hari Dahal, Jungmin Kim, Dhiraj Kumar Chaudhary, Thi Tuyet Nhan Le, Dong-Uk Kim, Hyein Jang, Jaisoo Kim
    Antonie van Leeuwenhoek.2022; 115(5): 563.     CrossRef
  • Aestuarium zhoushanense is a later heterotypic synonym of Marivivens donghaensis, and transfer of Paradonghicola geojensis to the genus Marivivens as Marivivens geojensis comb. nov
    Luxuan Qu, Yating Li, Wanpeng Wang, Zongze Shao, Zheng Gao, Qiliang Lai
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Lysobacter chinensis sp. nov., a cellulose-degrading strain isolated from cow dung compost
    Yuyue Liu, Liuyan Zhou, Xinping Yang, Pengbin Li, Jinping Dai, Yuqing Xie, Xiaowu Wang, Zhifang Wang, Zhanqiang Su, Lei Feng
    Antonie van Leeuwenhoek.2022; 115(8): 1031.     CrossRef
  • Quadrisphaera setariae sp. nov., polyphosphate-accumulating bacterium occurring as tetrad or aggregate cocci and isolated from Setaria viridis
    Inhyup Kim, Geeta Chhetri, Jiyoun Kim, Yoonseop So, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Thauera sedimentorum sp. nov., Isolated from Coastal Sediment
    Jihye Baek, Nattira Jaikwang, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
    Current Microbiology.2022;[Epub]     CrossRef
  • Description of Deefgea piscis sp. nov., and Deefgea tanakiae sp. nov., isolated from the gut of Korean indigenous fish
    Do-Hun Gim, So-Yeon Lee, Jeong Eun Han, Jae-Yun Lee, Seo Min Kang, Jin-Woo Bae
    Journal of Microbiology.2022; 60(11): 1061.     CrossRef
  • Flavobacterium proteolyticum sp. nov., isolated from aquaculture water
    Juan Du, Yang Liu, Tao Pei, Anzhang Li, Ming-Rong Deng, Honghui Zhu
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Paracoccus everestensis sp. nov., a novel bacterium with great antioxidant capacity isolated from the north slope of Mount Everest
    Xiaowen Cui, Yang Liu, Yajie Xu, Tuo Chen, Songlin Zhang, Jinxiu Wang, Ruiqi Yang, Guangxiu Liu, Wei Zhang, Gaosen Zhang
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • [Retracted] Assembly of 97 Novel Bacterial Genomes in the Microbial Community Affiliated with Polyvinyl Alcohol in Soil of Northern China
    Jiaxing Liu, Xun Gu, Hui Li, Yu-Hang Zhang
    BioMed Research International.2022;[Epub]     CrossRef
  • Comparative Genomics Reveals Genetic Diversity and Metabolic Potentials of the Genus Qipengyuania and Suggests Fifteen Novel Species
    Yang Liu, Tao Pei, Juan Du, Qing Yao, Ming-Rong Deng, Honghui Zhu, Gaurav Sharma, Feng Cai, Xuewei Xu
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Sagittula salina sp. nov., isolated from marine waste
    Leila Satari, Esther Molina-Menor, Àngela Vidal-Verdú, Javier Pascual, Juli Peretó, Manuel Porcar
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Pseudophaeobacter flagellatus sp. nov., isolated from coastal water
    Yong Guan, Yue Jiang, Young-Min Kim, Seung Yeob Yu, Seung-Hyeon Choi, Hanna Choe, Zhun Li, Mi-Kyung Lee
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Thalassococcus arenae sp. nov. isolated from sea sand
    Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Sook Lee, Jung-Hoon Yoon, Ampaitip Sukhoom, Wonyong Kim
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Microaerobic enrichment of benzene-degrading bacteria and description of Ideonella benzenivorans sp. nov., capable of degrading benzene, toluene and ethylbenzene under microaerobic conditions
    Anna Bedics, András Táncsics, Erika Tóth, Sinchan Banerjee, Péter Harkai, Balázs Kovács, Károly Bóka, Balázs Kriszt
    Antonie van Leeuwenhoek.2022; 115(9): 1113.     CrossRef
  • Hymenobacter lucidus sp. nov., and Hymenobacter nitidus sp. nov., isolated from soil
    Hyejin Oh, Hyang Burm Lee, Myung Kyum Kim
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Natronococcus pandeyae sp. nov., a Novel Haloarchaeon from Sambhar Salt Lake
    Swapnil Kajale, Neelima Deshpande, Tushar Lodha, Yogesh Shouche, Avinash Sharma
    Current Microbiology.2022;[Epub]     CrossRef
  • Parachryseolinea silvisoli gen. nov., sp. nov., isolated from forest soil, and reclassification of Chryseolinea flava as Pseudochryseolinea flava gen. nov., comb. nov.
    Chunling Wang, Yingying Lv, Anzhang Li, Qing Yao, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Whole genome sequencing of the halophilic Halomonas qaidamensis XH36, a novel species strain with high ectoine production
    Tiantian Zhang, Tianqi Cui, Yaning Cao, Yongzhen Li, Fenghui Li, Derui Zhu, Jiangwa Xing
    Antonie van Leeuwenhoek.2022; 115(4): 545.     CrossRef
  • Draft Genome Sequence of Labrys okinawensis, Isolated from Acaciella sp. Nodules in Mexico
    Belén Chávez-Ramírez, Violeta Larios-Serrato, Paulina Estrada-de los Santos, Leighton Pritchard
    Microbiology Resource Announcements.2022;[Epub]     CrossRef
  • Sporosarcina jiandibaonis sp. nov., isolated from saline soil
    Delong Kong, Zhanfeng Xia, Yan Gao, Yiqing Zhou, Xu Jiang, Piao Xu, Wei Guo, Zhiyong Ruan
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Niabella agricola sp. nov., isolated from paddy soil
    Shih-Yao Lin, Chia-Fang Tsai, Asif Hameed, Tzung-Han Lee, Chiu-Chung Young
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Description of Corynebacterium poyangense sp. nov., isolated from the feces of the greater white-fronted geese (Anser albifrons)
    Qian Liu, Guoying Fan, Kui Wu, Xiangning Bai, Xi Yang, Wentao Song, Shengen Chen, Yanwen Xiong, Haiying Chen
    Journal of Microbiology.2022; 60(7): 668.     CrossRef
  • Paludisphaera rhizosphaereae sp. nov., a new member of the family Isosphaeraceae, isolated from the rhizosphere soil of Erianthus ravennae
    Khongsai L. Lhingjakim, Nandardhane Smita, Gaurav Kumar, Uppada Jagadeeshwari, Shabbir Ahamad, Chintalapati Sasikala, Chintalapati Venkata Ramana
    Antonie van Leeuwenhoek.2022; 115(8): 1073.     CrossRef
  • Fibrella aquatilis sp. nov., Fibrella rubiginis sp. nov. and Fibrella forsythiae sp. nov., isolated from freshwater, rusty iron and forsythia flower
    Heeyoung Kang, Haneul Kim, Seokhyeon Bae, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Corallococcus silvisoli sp. nov., a novel myxobacterium isolated from subtropical forest soil
    Xian-Jiao Zhang, Guang-Da Feng, Yang Liu, Yang Zhou, Xiaoqin Deng, Qing Yao, Honghui Zhu
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Fundicoccus fermenti sp. nov., an indigo-reducing facultative anaerobic alkaliphile isolated from indigo fermentation liquor used for dyeing
    Zhihao Tu, Helena de Fátima Silva Lopes, Isao Yumoto
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Lignin-Oxidizing Vibrios Involved in the Mineralization of Plant Detritus in the Continental Slope
    Jianyang Li, Chunming Dong, Biswarup Sen, Qiliang Lai, Linfeng Gong, Guangyi Wang, Zongze Shao
    SSRN Electronic Journal .2022;[Epub]     CrossRef
  • Mapping Strengths and Weaknesses of Different Clustering Approaches to Deciphering Bacterial Chimerism
    David J. Burks, Rajeev K. Azad
    OMICS: A Journal of Integrative Biology.2022; 26(8): 422.     CrossRef
  • Unraveling Nitrogen, Sulfur, and Carbon Metabolic Pathways and Microbial Community Transcriptional Responses to Substrate Deprivation and Toxicity Stresses in a Bioreactor Mimicking Anoxic Brackish Coastal Sediment Conditions
    Paula Dalcin Martins, Maider J. Echeveste Medrano, Arslan Arshad, Julia M. Kurth, Heleen T. Ouboter, Huub J. M. Op den Camp, Mike S. M. Jetten, Cornelia U. Welte
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Rhizobium setariae sp. nov., an Indole-3-Acetic Acid-Producing Bacterium Isolated from Green Foxtail, Setaria viridis
    Minchung Kang, Taegun Seo
    Current Microbiology.2022;[Epub]     CrossRef
  • Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead)
    Seomin Kang, Jae-Yun Lee, Jeong Eun Han, Yun-Seok Jeong, Do-Hun Gim, Jin-Woo Bae
    Journal of Microbiology.2022; 60(9): 890.     CrossRef
  • Paenibacillus arenosi sp. nov., a siderophore-producing bacterium isolated from coastal sediment
    Jihye Baek, Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Vagococcus allomyrinae sp. nov. and Enterococcus larvae sp. nov., isolated from larvae of Allomyrina dichotoma
    Sung-Min Kim, Yeong-Sik Byeon, Hong Lim Yang, In Seop Kim, Soon Dong Lee
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Staphylococcus ratti sp. nov. Isolated from a Lab Rat
    Vojtěch Kovařovic, Ivo Sedláček, Petr Petráš, Stanislava Králová, Ivana Mašlaňová, Pavel Švec, Meina Neumann-Schaal, Tibor Botka, Tereza Gelbíčová, Eva Staňková, Jiří Doškař, Roman Pantůček
    Pathogens.2022; 11(1): 51.     CrossRef
  • Mucilaginibacter rivuli sp. nov., isolated from a water rivulet
    Seokhyeon Bae, Heeyoung Kang, Haneul Kim, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • A Novel Alteromonas Phage Lineage with a Broad Host Range and Small Burst Size
    Yahui Yang, Ruijie Ma, Chen Yu, Junlei Ye, Xiaowei Chen, Long Wang, Nianzhi Jiao, Rui Zhang, Wei-Hua Chen
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Muricauda aurea sp. nov. and Muricauda profundi sp. nov., two marine bacteria isolated from deep sea sediment of Pacific Ocean
    Sufang Zhao, Renju Liu, Qiliang Lai, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Lysobacter ciconiae sp. nov., and Lysobacter avium sp. nov., isolated from the faeces of an Oriental stork
    So-Yeon Lee, Pil Soo Kim, Hojun Sung, Dong-Wook Hyun, Jin-Woo Bae
    Journal of Microbiology.2022; 60(5): 469.     CrossRef
  • Culturomics of Bacteria from Radon-Saturated Water of the World’s Oldest Radium Mine
    Gabriela Kapinusova, Kunal Jani, Tereza Smrhova, Petr Pajer, Irena Jarosova, Jachym Suman, Michal Strejcek, Ondrej Uhlik, Jing Han
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Pseudomonas germanica sp. nov., isolated from Iris germanica rhizomes
    Kostadin Evgeniev Atanasov, David Miñana-Galbis, Julia Gallego, Annabel Serpico, Montserrat Bosch, Teresa Altabella, Albert Ferrer
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Cohnella herbarum sp. nov., isolated from wild grass fermentation broth
    Miyoung Won, Shin Ae Lee, Seung-Beom Hong, Byeong-Hak Han, Soon-Wo Kwon
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Description of Prasinibacter corallicola gen. nov., sp. nov., a zeaxanthin-producing bacterium isolated from stony coral Porites lutea
    Guanghua Wang, Jianfeng Liu, Yuanjin Li, Jin Li, Jixin Luo, Biao Chen, Zhiheng Liao, Hongfei Su, Jiayuan Liang, Kefu Yu
    Antonie van Leeuwenhoek.2022; 115(7): 933.     CrossRef
  • Phylogenomic analysis of a metagenome-assembled genome indicates a new taxon of an anoxygenic phototroph bacterium in the family Chromatiaceae and the proposal of “Candidatus Thioaporhodococcus” gen. nov
    Bakshi Amulyasai, Rai Anusha, Chintalapati Sasikala, Chintalapati Venkata Ramana
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Mucilaginibacter aurantiaciroseus sp. nov. and Mucilaginibacter flavidus sp. nov., isolated from Renlongba glacier on the Tibetan Plateau
    Lei-Lei Yang, Yu Pang, Hong-Can Liu, Yu-Hua Xin, Qing Liu
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Aeromicrobium stalagmiti sp. nov., isolated from a lava cave
    Yeong-Sik Byeon, Sung-Min Kim, Hong Lim Yang, In Seop Kim, Soon Dong Lee
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Halorubrum salinarum sp. nov., an extremely halophilic archaeon isolated from a saturated brine pond of a saltern
    Ho Le Han, Reneelyn E. Danganan, Zhun Li, Na-Ri Shin, Reuel M. Bennett, Gina R. Dedeles, Song-Gun Kim
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Sulfuriroseicoccus oceanibius gen. nov., sp. nov., a representative of the phylum Verrucomicrobia with a special cytoplasmic membrane
    Xi Feng, Qi-Yun Liang, Qi-Hang Zou, Meng-Qi Ye, Zong-Jun Du
    Antonie van Leeuwenhoek.2022; 115(2): 337.     CrossRef
  • Sediminibacillus dalangtanensis sp. nov., a moderate halophile isolated from hypersaline sediments of the Qaidam Basin in Northwest China
    Ting Huang, Qiliang Lai, Long Xiao, Linfeng Gong, Zongze Shao, Hongmei Wang, Yi Xu, Ricardo Amils, Cristina Escudero, José M. Martinez
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Croceicoccus hydrothermalis sp. nov., isolated from shallow-sea hydrothermal system off Kueishantao Island
    Beihan Chen, Youting Ye, Dan Lin, Mu Zhang, Jia Sun, Kai Tang
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Deciphering Genomes: Genetic Signatures of Plant-Associated Micromonospora
    Raúl Riesco, Maite Ortúzar, José Manuel Fernández-Ábalos, Martha E. Trujillo
    Frontiers in Plant Science.2022;[Epub]     CrossRef
  • Erwinia phyllosphaerae sp. nov., a novel bacterium isolated from phyllosphere of pomelo (Citrus maxima)
    Ming-Kai Pan, Guang-Da Feng, Qing Yao, Jiali Li, Chenjian Liu, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Capillimicrobium parvum gen. nov., sp. nov., a novel representative of Capillimicrobiaceae fam. nov. within the order Solirubrobacterales, isolated from a grassland soil
    Selma Vieira, Katharina J. Huber, Alicia Geppert, Jacqueline Wolf, Meina Neumann-Schaal, Manja Luckner, Gerhard Wanner, Mathias Müsken, Jörg Overmann
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Salegentibacter lacus sp. nov. and Salegentibacter tibetensis sp. nov., isolated from hypersaline lakes on the Tibetan Plateau
    Huibin Lu, Peixin Gao, Dorji Phurbu, Qinglong L. Wu, Peng Xing
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Sphingomonas cannabina sp. nov., isolated from Cannabis sativa L. ‘Cheungsam’
    Doeun Jeon, Lingmin Jiang, Yuxin Peng, Jiyoon Seo, Zhun Li, Seung-Hwan Park, Rae-Dong Jeong, Soon Ju Park, Jae Cheol Jeong, Jiyoung Lee
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Ideonella alba sp. nov. and Ideonella aquatica sp. nov. isolated from an aquaculture farm
    Juan Du, Yang Liu, Tao Pei, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Gottfriedia endophyticus sp. nov., a novel indole-acetic acid producing bacterium isolated from the roots of rice plant
    Geeta Chhetri, Inhyup Kim, Taegun Seo
    Antonie van Leeuwenhoek.2022; 115(7): 943.     CrossRef
  • Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides
    Lucelia Cabral, Gabriela F. Persinoti, Douglas A. A. Paixão, Marcele P. Martins, Mariana A. B. Morais, Mariana Chinaglia, Mariane N. Domingues, Mauricio L. Sforca, Renan A. S. Pirolla, Wesley C. Generoso, Clelton A. Santos, Lucas F. Maciel, Nicolas Terrap
    Nature Communications.2022;[Epub]     CrossRef
  • Aggregatimonas sangjinii gen. nov., sp. nov., a novel silver nanoparticle synthesizing bacterium belonging to the family Flavobacteriaceae
    Dawoon Chung, Jaejoon Jung, Jaoon Young Hwan Kim, Kyung Woo Kim, Yong Min Kwon
    Antonie van Leeuwenhoek.2022; 115(2): 325.     CrossRef
  • Comparative genomic analyses of four novel Ramlibacter species and the cellulose-degrading properties of Ramlibacter cellulosilyticus sp. nov.
    Minchung Kang, Geeta Chhetri, Inhyup Kim, Yoonseop So, Taegun Seo
    Scientific Reports.2022;[Epub]     CrossRef
  • Cellulosimicrobium protaetiae sp. nov., isolated from the gut of the larva of Protaetia brevitarsis seulensis
    Ho Le Han, Tra T. H. Nguyen, Zhun Li, Na-Ri Shin, Song-Gun Kim
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Prokaryotes of renowned Karlovy Vary (Carlsbad) thermal springs: phylogenetic and cultivation analysis
    Tereza Smrhova, Kunal Jani, Petr Pajer, Gabriela Kapinusova, Tomas Vylita, Jachym Suman, Michal Strejcek, Ondrej Uhlik
    Environmental Microbiome.2022;[Epub]     CrossRef
  • Draft Genome Sequences of the Kocuria subflava Type Strain KCTC 39547 and Kocuria sp. Strain JC486, a Newly Isolated Strain from a Wild Ass Sanctuary in Gujarat, India
    Jagadeeshwari Uppada, Sasikala Chintalapati, Karthika K, Venkata Ramana Chintapati, J. Cameron Thrash
    Microbiology Resource Announcements.2022;[Epub]     CrossRef
  • Cellulomonas fulva sp. nov., isolated from oil-contaminated soil
    Ram Hari Dahal, Jungmin Kim, Dong-Uk Kim, Ke Dong, Yongseok Hong, Dhiraj Kumar Chaudhary
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Hymenobacter piscis sp. nov., isolated from a fish pond
    Shih-Yi Sheu, Che-Chia Yang, Soon-Wo Kwon, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Corynebacterium uberis sp. nov. frequently isolated from bovine mastitis
    Sonja Kittl, Eveline Studer, Isabelle Brodard, Andreas Thomann, Jörg Jores
    Systematic and Applied Microbiology.2022; 45(4): 126325.     CrossRef
  • Spiractinospora alimapuensis gen. nov., sp. nov., isolated from marine sediment of Valparaíso Bay (Chile) and proposal for reclassification of two species of the genus Nocardiopsis
    Fernanda P. Claverías, Néstor Serna-Cardona, Andrés Cumsille, Leonardo Zamora-Leiva, Raúl Riesco, Eduardo Couve, Martha E. Trujillo, Beatriz Cámara
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Microvirga splendida sp. nov., bacteria isolated from soil
    Yuna Park, Soohyun Maeng, Tuvshinzaya Damdintogtokh, Hyejin Oh, Minji Bang, Jaewoo Bai, Myung Kyum Kim
    Antonie van Leeuwenhoek.2022; 115(6): 741.     CrossRef
  • Genome analysis of Pseudomonas species reveals that Pseudomonas panacis Park et al. 2005 is a later heterotypic synonym of Pseudomonas marginalis (Brown 1918) Stevens 1925 (Approved Lists 1980)
    Ritu Rani Archana Kujur, Sushanta Deb, Subrata K. Das
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Halomonas antri sp. nov., a carotenoid-producing bacterium isolated from surface seawater
    Yoonseop So, Geeta Chhetri, Inhyup Kim, Minchung Kang, Jiyoun Kim, Byungjo Lee, Wonhee Jang, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Parvicella tangerina gen. nov., sp. nov. (Parvicellaceae fam. nov., Flavobacteriales), first cultured representative of the marine clade UBA10066, and Lysobacter luteus sp. nov., from activated sludge of a seawater-processing wastewater treat
    Teresa Lucena, Olga Sánchez, Isabel Sanz-Saez, Silvia G. Acinas, Laura Garrido, Jordi Mas, M. Carmen Macián, María A. Ruvira, David R. Arahal, María J. Pujalte
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Sphingomonas folii sp. nov., Sphingomonas citri sp. nov. and Sphingomonas citricola sp. nov., isolated from citrus phyllosphere
    Guang-Da Feng, Jiali Li, Mingkai Pan, Xiaoqin Deng, Meng Chen, Qing Yao, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Frequent Occurrence and Metabolic Versatility of Marinifilaceae Bacteria as Key Players in Organic Matter Mineralization in Global Deep Seas
    Jianyang Li, Chunming Dong, Qiliang Lai, Guangyi Wang, Zongze Shao, Thomas J. Sharpton
    mSystems.2022;[Epub]     CrossRef
  • Tenebrionicola larvae gen. nov., sp. nov., isolated from larvae of mealworm Tenebrio molitor L., and a proposal to transfer Erwinia teleogrylli Liu et al. 2016 to a new genus Entomohabitans as Entomohabitans teleogrylli comb. nov.
    Soon Dong Lee, Seong-Min Kim, Yeong-Sik Byeon, Hong Lim Yang, Soo Hong Chang, In Seop Kim
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Sessilibacter corallicola gen. nov., sp. nov., a sessile bacterium isolated from coral Porites lutea
    Jianfeng Liu, Jin Li, Jixin Luo, Yuanjin Li, Zian Yang, Chengli Huang, Feilong Sun, Guanghua Wang
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Moraxella tetraodonis sp. nov., isolated from freshwater pufferfish (Tetraodon cutcutia) skin
    Lipika Das, Subrata K. Das
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Sulfurimonas marina sp. nov., an obligately chemolithoautotrophic, sulphur-oxidizing bacterium isolated from a deep-sea sediment sample from the South China Sea
    Zhaodi Wang, Shasha Wang, Qiliang Lai, Shiping Wei, Lijing Jiang, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Genome-based reclassification of Azospirillum brasilense Az39 as the type strain of Azospirillum argentinense sp. nov.
    Natália dos Santos Ferreira, Anahí Coniglio, Mariana Puente, Fernando Hayashi Sant’Anna, Guillermo Maroniche, Julia García, Romina Molina, Sofia Nievas, Camila Gazolla Volpiano, Adriana Ambrosini, Luciane M. P. Passaglia, Raul O. Pedraza, Verônica Massena
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Genome-based, phenotypic and chemotaxonomic classification of Faecalibacterium strains: proposal of three novel species Faecalibacterium duncaniae sp. nov., Faecalibacterium hattorii sp. nov. and Faecalibacterium gallinarum sp. nov.
    Mitsuo Sakamoto, Naomi Sakurai, Hiroki Tanno, Takao Iino, Moriya Ohkuma, Akihito Endo
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Bradyrhizobium altum sp. nov., Bradyrhizobium oropedii sp. nov. and Bradyrhizobium acaciae sp. nov. from South Africa show locally restricted and pantropical nodA phylogeographic patterns
    Juanita R. Avontuur, Marike Palmer, Chrizelle W. Beukes, Wai Y. Chan, Taponeswa Tasiya, Elritha van Zyl, Martin P.A. Coetzee, Tomasz Stepkowski, Stephanus N. Venter, Emma T. Steenkamp
    Molecular Phylogenetics and Evolution.2022; 167: 107338.     CrossRef
  • Azospirillum tabaci sp. nov., a bacterium isolated from rhizosphere soil of Nicotiana tabacum L
    Yan-Qing Duan, Xing-Kui Zhou, Neeli Habib, Shi-Qiang Gao, Li-Min Dong, Xiao-Fei Liu, Yang-Mei Shi, Wen-Jun Li, Gang Du
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Cecal Microbial Hydrogen Cycling Potential Is Linked to Feed Efficiency Phenotypes in Chickens
    Gustavo Antonio Ramírez, Jitendra Keshri, Isabella Vahrson, Arkadiy I. Garber, Mark E. Berrang, Nelson A. Cox, Fernando González-Cerón, Samuel E. Aggrey, Brian B. Oakley
    Frontiers in Veterinary Science.2022;[Epub]     CrossRef
  • Enterococcus alishanensis sp. nov., a novel lactic acid bacterium isolated from fresh coffee beans
    Jen-hao Chung, Misa Otoguro, Fujitoshi Yanagida, Hui-chung Wu, Yu-chung Chang, Yun-Shien Lee, Yi-sheng Chen
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Comparative Genomics of the Genus Pseudomonas Reveals Host- and Environment-Specific Evolution
    Zaki Saati-Santamaría, Riccardo Baroncelli, Raúl Rivas, Paula García-Fraile, Olaya Rendueles Garcia
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Croceicoccus gelatinilyticus sp. nov., isolated from a tidal flat sediment
    Tao Pei, Yang Liu, Juan Du, Kunpeng Huang, Ming-Rong Deng, Honghui Zhu
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Shewanella jiangmenensis sp. nov., isolated from aquaculture water
    Yingli Song, Anzhang Li, Shuaishuai Xu, Mingxia Zhang, Qing Yao, Lian Ma, Honghui Zhu
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Mesonia aestuariivivens sp. nov., isolated from a tidal flat
    Sooyeon Park, Jung-Sook Lee, Wonyong Kim, Jung-Hoon Yoon
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Chryseobacterium tagetis sp. nov., a plant growth promoting bacterium with an antimicrobial activity isolated from the roots of medicinal plant (Tagetes patula)
    Geeta Chhetri, Inhyup Kim, Jiyoun Kim, Yoonseop So, Taegun Seo
    The Journal of Antibiotics.2022; 75(6): 312.     CrossRef
  • Description ofPseudogemmobacter faecipullorumsp. nov., isolated from poultry manure
    Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Yu-Shan Tang, Chiu-Chung Young
    FEMS Microbiology Letters.2022;[Epub]     CrossRef
  • Acetylenotrophic and Diazotrophic Bradyrhizobium sp. Strain I71 from TCE-Contaminated Soils
    Denise M. Akob, John M. Sutton, Timothy J. Bushman, Shaun M. Baesman, Edina Klein, Yesha Shrestha, Robert Andrews, Janna L. Fierst, Max Kolton, Sara Gushgari-Doyle, Ronald S. Oremland, John L. Freeman, Jeremy D. Semrau
    Applied and Environmental Microbiology.2022;[Epub]     CrossRef
  • Definition of the Metagenomic Profile of Ocean Water Samples From the Gulf of Mexico Based on Comparison With Reference Samples From Sites Worldwide
    Antonio Loza, Fernando García-Guevara, Lorenzo Segovia, Alejandra Escobar-Zepeda, Maria del Carmen Sanchez-Olmos, Enrique Merino, Alejandro Sanchez-Flores, Liliana Pardo-Lopez, Katy Juarez, Rosa-Maria Gutierrez-Rios
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Marinobacterium arenosum sp. nov., isolated from a coastal sand
    Yunjeong Lee, Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Nocardioides palaemonis sp. nov. and Tessaracoccus palaemonis sp. nov., isolated from the gastrointestinal tract of lake prawn
    Do-Yeon Kim, In-Chul Jeong, So-Yeon Lee, Yun-Seok Jeong, Jeong Eun Han, Euon Jung Tak, June-Young Lee, Pil Soo Kim, Dong-Wook Hyun, Jin-Woo Bae
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Genomic characterization and production of antimicrobial lipopeptides by Bacillus velezensis P45 growing on feather by-products
    Carolini Esmeriz da Rosa, Cristian Mauricio Barreto Pinilla, Paolo Stincone, Jamile Queiroz Pereira, Ana Paula Muterle Varela, Fabiana Quoos Mayer, Adriano Brandelli
    Journal of Applied Microbiology.2022; 132(3): 2067.     CrossRef
  • Subtercola endophyticus sp. nov., a cold-adapted bacterium isolated from Abies koreana
    Lingmin Jiang, Yuxin Peng, Jiyoon Seo, Doeun Jeon, Mi Gyeong Jo, Ju Huck Lee, Jae Cheol Jeong, Cha Young Kim, Hyeong Cheol Park, Jiyoung Lee
    Scientific Reports.2022;[Epub]     CrossRef
  • Type IV pili trigger episymbiotic association of Saccharibacteria with its bacterial host
    Bingliang Xie, Jian Wang, Yong Nie, Jing Tian, Zerui Wang, Dongwei Chen, Beiyu Hu, Xiao-Lei Wu, Wenbin Du
    Proceedings of the National Academy of Sciences.2022;[Epub]     CrossRef
  • Gymnodinialimonas ceratoperidinii gen. nov., sp. nov., isolated from rare marine dinoflagellate Ceratoperidinium margalefii
    Yue Jiang, Yuxin Peng, Hyeon Ho Shin, Hyun Jung Kim, Ki-Hyun Kim, Lingmin Jiang, Jiyoung Lee, Zhun Li
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Pufferfish (Tetraodon cutcutia) Sampled from a Freshwater River Serves as an Intermediate Reservoir of a Sucrose Nonfermenting Variant of Vibrio cholerae PS-4
    Lipika Das, Sushanta Deb, Eiji Arakawa, Shinji Yamasaki, Subrata K. Das, Courtney J. Robinson
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Deinococcus betulae sp. nov. and Deinococcus arboris sp. nov., novel bacteria isolated from bark of birch tree (Betula platyphylla)
    Seokhyeon Bae, Heeyoung Kang, Haneul Kim, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Hi-C deconvolution of a textile dye–related microbiome reveals novel taxonomic landscapes and links phenotypic potential to individual genomes
    Ayixon Sánchez-Reyes, Luz Bretón-Deval, Hayley Mangelson, Ilse Salinas-Peralta, Alejandro Sanchez-Flores
    International Microbiology.2022; 25(1): 99.     CrossRef
  • Thermal Endurance by a Hot-Spring-Dwelling Phylogenetic Relative of the Mesophilic Paracoccus
    Nibendu Mondal, Chayan Roy, Sumit Chatterjee, Jagannath Sarkar, Subhajit Dutta, Sabyasachi Bhattacharya, Ranadhir Chakraborty, Wriddhiman Ghosh, Jeffrey A. Gralnick
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Microbiota of the Pregnant Mouse: Characterization of the Bacterial Communities in the Oral Cavity, Lung, Intestine, and Vagina through Culture and DNA Sequencing
    Jonathan M. Greenberg, Roberto Romero, Andrew D. Winters, Jose Galaz, Valeria Garcia-Flores, Marcia Arenas-Hernandez, Jonathan Panzer, Zachary Shaffer, David J. Kracht, Nardhy Gomez-Lopez, Kevin R. Theis, Jennifer M. Auchtung
    Microbiology Spectrum.2022;[Epub]     CrossRef
  • Sphingomonas radiodurans sp. nov., a novel radiation-resistant bacterium isolated from the north slope of Mount Everest
    Yang Liu, Tuo Chen, Xiaowen Cui, Yeteng Xu, Shixin Hu, Yidan Zhao, Wei Zhang, Guangxiu Liu, Gaosen Zhang
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Enterovibrio paralichthyis sp. nov., isolated from the gut of an olive flounder Paralichthys olivaceus
    Young-Ok Kim, In-Suk Park, Dong-Gyun Kim, Sooyeon Park, Sung Hoon Han, Jung-Hoon Yoon
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Deep Learning Encoding for Rapid Sequence Identification on Microbiome Data
    Jacob Borgman, Karen Stark, Jeremy Carson, Loren Hauser
    Frontiers in Bioinformatics.2022;[Epub]     CrossRef
  • Arthrobacter wenxiniae sp. nov., a novel plant growth-promoting rhizobacteria species harbouring a carotenoids biosynthetic gene cluster
    Yu-chen Sun, Pengbo Sun, Jing Xue, Yunpeng Du, Hui Yan, Li-wei Wang, Xin-xin Yi, Jian-guang Sun, Xiuhai Zhang, Jun-lian Gao
    Antonie van Leeuwenhoek.2022; 115(3): 353.     CrossRef
  • Microvirga terricola sp. nov. and Microvirga solisilvae sp. nov, isolated from forest soil
    Xianjiao Zhang, Guang-Da Feng, Xiangling Zhen, Yulian Zhang, Xiaoqin Deng, Honghui Zhu, Qing Yao
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Pararoseburia lenta gen. nov., sp. nov. isolated from human faeces
    Rashidin Abdugheni, Yu-Jing Wang, Dan-Hua Li, Meng-Xuan Du, Chang Liu, Nan Zhou, Shuang-Jiang Liu
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Six novel Micromonospora species associated with the phyllosphere and roots of leguminous plants: Micromonospora alfalfae sp. nov., Micromonospora cabrerizensis sp. nov., Micromonospora foliorum sp. nov., Micromonospora hortensis sp. nov., Micromonospora
    Raúl Riesco, Maite Ortúzar, Brenda Román-Ponce, Fernando Sánchez-Juanes, José Mariano Igual, Martha E. Trujillo
    International Journal of Systematic and Evolutionary Microbiology .2022;[Epub]     CrossRef
  • Rothia santali sp. nov., endophytic bacteria isolated from sandalwood (Santalum album L.) seedling
    Ngangyola Tuikhar, Kiran Kirdat, Gayatri Nair, S. Padma, Vipool Thorat, P. Swetha, Shivaji Sathe, R. Sundararaj, Amit Yadav
    Archives of Microbiology.2022;[Epub]     CrossRef
  • Rhodococcus spelaei sp. nov., isolated from a cave, and proposals that Rhodococcus biphenylivorans is a later synonym of Rhodococcus pyridinivorans, Rhodococcus qingshengii and Rhodococcus baikonurensis are later synonyms of Rhodococcus eryth
    Soon Dong Lee, In Seop Kim
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Sweet spheres: succession and CAZyme expression of marine bacterial communities colonizing a mix of alginate and pectin particles
    Carina Bunse, Hanna Koch, Sven Breider, Meinhard Simon, Matthias Wietz
    Environmental Microbiology.2021; 23(6): 3130.     CrossRef
  • Pareuzebyella sediminis gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae, isolated from a tidal flat sediment
    Zhaobin Huang, Xiaomei Wei, Qiliang Lai, Shiyong Chen, Jianjun Yuan
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Description of Devosia faecipullorum sp. nov., harboring antibiotic- and toxic compound-resistant genes, isolated from poultry manure
    Shih-Yao Lin, Chia-Fang Tsai, Asif Hameed, Yu-Shan Tang, Chiu-Chung Young
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Description of Nocardioides piscis sp. nov., Sphingomonas piscis sp. nov. and Sphingomonas sinipercae sp. nov., isolated from the intestine of fish species Odontobutis interrupta (Korean spotted sleeper) and Siniperca scherzeri (leopard mandarin fish)
    Dong-Wook Hyun, Yun-Seok Jeong, Jae-Yun Lee, Hojun Sung, So-Yeon Lee, Jee-Won Choi, Hyun Sik Kim, Pil Soo Kim, Jin-Woo Bae
    Journal of Microbiology.2021; 59(6): 552.     CrossRef
  • Pseudomonas schmalbachii sp. nov., isolated from the gut of a millipede (Trigoniulus corallinus) from a coconut tree
    Matan Shelomi, Wen-Ming Chen, Hsin-Kuang Chen, Hsin-Ying Lee, Chiu-Chung Young, Shih-Yao Lin, Shwu-Jen Liaw
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Fuscibacter oryzae gen. nov., sp. nov., a phosphate-solubilizing bacterium isolated from the rhizosphere of rice plant
    Geeta Chhetri, Minchung Kang, Jiyoun Kim, Inhyup Kim, Yoonseop So, Taegun Seo
    Antonie van Leeuwenhoek.2021; 114(9): 1453.     CrossRef
  • Genome insight and description of antibiotic producing Massilia antibiotica sp. nov., isolated from oil-contaminated soil
    Ram Hari Dahal, Dhiraj Kumar Chaudhary, Jaisoo Kim
    Scientific Reports.2021;[Epub]     CrossRef
  • Maritimibacter harenae sp. nov. and Sneathiella litorea sp. nov.: members of Alphaproteobacteria isolated from sea sand
    Shehzad Abid Khan, Hye Su Jung, Hye Yoon Park, Che Ok Jeon
    Antonie van Leeuwenhoek.2021; 114(6): 799.     CrossRef
  • Palleronia sediminis sp. nov. and Flavivirga algicola sp. nov., two marine bacteria isolated from offshore areas near Weihai
    Xun-Ke Sun, Ya-Ning Zhang, Yu-Yao Jia, Yan-Lin Zhong, Guan-Jun Chen, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Paenarthrobacter sp. GOM3 Is a Novel Marine Species With Monoaromatic Degradation Relevance
    Jaime Rosas-Díaz, Alejandra Escobar-Zepeda, Libertad Adaya, Jorge Rojas-Vargas, Diego Humberto Cuervo-Amaya, Ayixon Sánchez-Reyes, Liliana Pardo-López
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Pseudidiomarina piscicola sp. nov., isolated from cultured European seabass, Dicenthrarchus labrax
    M. Carmen Macián, Teresa Lucena, David R. Arahal, María A. Ruvira, Rosa Aznar, María J. Pujalte
    Archives of Microbiology.2021; 203(4): 1293.     CrossRef
  • Pseudoprevotella muciniphila gen. nov., sp. nov., a mucin-degrading bacterium attached to the bovine rumen epithelium
    Sang Weon Na, Byung Hee Chun, Seok-Hyeon Beak, Shehzad Abid Khan, Md. Najmul Haque, Jae Sung Lee, Che Ok Jeon, Sang-Suk Lee, Myunggi Baik, Pankaj Kumar Arora
    PLOS ONE.2021; 16(5): e0251791.     CrossRef
  • Nocardioides baculatus sp. nov., a novel actinomycete isolated from the rhizosphere of Tagetes patula
    Geeta Chhetri, Inhyup Kim, Minchung Kang, Jiyoun Kim, Yoonseop So, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Phylogenomic Analyses of a Clade Within the Family Flavobacteriaceae Suggest Taxonomic Reassignments of Species of the Genera Algibacter, Hyunsoonleella, Jejuia, and Flavivirga, and the Proposal of Pseudalgibacter gen. nov. and Pseudalgibacter alginicilyt
    Miao Li, Ling-Zhi Hou, Xing-Hao Xu, Xiao-Xiao Wang, Ming-Can Zheng, Yan-Jiao Zhang, Ang Liu
    Current Microbiology.2021; 78(8): 3277.     CrossRef
  • Description of antibiotic-producing novel bacteria Paraburkholderia antibiotica sp. nov. and Paraburkholderia polaris sp. nov.
    Ram Hari Dahal, Jungmin Kim, Dhiraj Kumar Chaudhary, Dong-Uk Kim, Jaisoo Kim
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Thiomicrorhabdus sediminis sp. nov. and Thiomicrorhabdus xiamenensis sp. nov., novel sulfur-oxidizing bacteria isolated from coastal sediments and an emended description of the genus Thiomicrorhabdus
    Xuewen Liu, Baoping Chen, Qiliang Lai, Zongze Shao, Lijing Jiang
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Sanguibacter suaedae sp. nov., isolated from the root of Suaeda aralocaspica in north-west PR China
    Qin Ma, Rui-Feng Lei, Yu-Qian Li, Dilireba Abudourousuli, Zulihumaer Rouzi, Muyesaier Aosiman, Fang Liu, Yang-Yang Liu, Deng-Di An, Wen-Jun Li
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Algibacillus agarilyticus gen. nov., sp. nov., isolated from the surface of the red algae Gelidium amansii
    Xue Meng, Ya-Qi Chang, Huan Wang, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • 'Candidatus Phytoplasma sacchari’, a novel taxon - associated with Sugarcane Grassy Shoot (SCGS) disease
    Kiran Kirdat, Bhavesh Tiwarekar, Vipool Thorat, Shivaji Sathe, Yogesh Shouche, Amit Yadav
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Bruguierivorax albus gen. nov. sp. nov. Isolated from Mangrove Sediment and Proposal of Bruguierivoracaceae fam. nov
    Mi Li, Kai Liu, Yonghong Liu, Chenghai Gao, Xiangxi Yi
    Current Microbiology.2021; 78(2): 856.     CrossRef
  • Uliginosibacterium aquaticum sp. nov., Isolated from a Freshwater Lake
    Jaeho Song, Mirae Kim, Miri S. Park, Yochan Joung, Ilnam Kang, Jang-Cheon Cho
    Current Microbiology.2021; 78(9): 3381.     CrossRef
  • Nonlabens ponticola sp. nov., isolated from seawater and reclassification of Nonlabens sediminis as a later heterotypic synonym of Nonlabens tegetincola
    Ye Lin Seo, Jaejoon Jung, Chi-une Song, Yong Min Kwon, Hye Su Jung, Seong-il Eyun, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Thermosipho ferrireducens sp.nov., an anaerobic thermophilic iron(III)-reducing bacterium isolated from a deep-sea hydrothermal sulfide deposits
    Yao Chen, Yang He, Zongze Shao, Xiqiu Han, Danling Chen, Jian Yang, Xiang Zeng
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Peteryoungia gen. nov. with four new species combinations and description of Peteryoungia desertarenae sp. nov., and taxonomic revision of the genus Ciceribacter based on phylogenomics of Rhizobiaceae
    Praveen Rahi, Mitesh Khairnar, Ashwini Hagir, Avinash Narayan, Kunal R. Jain, Datta Madamwar, Aabeejjeet Pansare, Yogesh Shouche
    Archives of Microbiology.2021; 203(6): 3591.     CrossRef
  • Brevilactibacter coleopterorum sp. nov., isolated from the intestine of the dark diving beetle Hydrophilus acuminatus, and Weissella coleopterorum sp. nov., isolated from the intestine of the diving beetle Cybister lewisianus
    Dong-Wook Hyun, June-Young Lee, Hojun Sung, Pil Soo Kim, Yun-Seok Jeong, Jae-Yun Lee, Ji-Hyun Yun, Jee-Won Choi, Jeong Eun Han, So-Yeon Lee, Euon Jung Tak, Hyun Sik Kim, Jin-Woo Bae
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Crassaminicella thermophila sp. nov., a moderately thermophilic bacterium isolated from a deep-sea hydrothermal vent chimney and emended description of the genus Crassaminicella
    Xue-Gong Li, Jin Lin, Shi-Jie Bai, Jie Dai, Ze-Xi Jiao, Hong-Zhi Tang, Xiao-Qing Qi, Wei-Jia Zhang, Min Liu, Jian-Sheng Xu, Long-Fei Wu
    International Journal of Systematic and Evolutionary Microbiology.2021;[Epub]     CrossRef
  • Isoptericola sediminis sp. nov., Isolated from Chilika Lagoon
    Dhanesh Kumar, Jagadeeshwari U., Krishnaiah A., Suresh G., Ch. Sasikala, Ch. Venkata Ramana
    Current Microbiology.2021; 78(2): 848.     CrossRef
  • “Candidatus Laterigemmans baculatus” gen. nov. sp. nov., the first representative of rod shaped planctomycetes with lateral budding in the family Pirellulaceae
    Dhanesh Kumar, Gaurav Kumar, Uppada Jagadeeshwari, Chintalapati Sasikala, Chintalapati Venkata Ramana
    Systematic and Applied Microbiology.2021; 44(2): 126188.     CrossRef
  • Rahnella laticis sp. nov. and Rahnella contaminans sp. nov., and emended description of the genus Rahnella
    Dabin Jeon, In Seop Kim, Soon Dong Lee
    International Journal of Systematic and Evolutionary Microbiology.2021;[Epub]     CrossRef
  • Proposal of Thermoactinomyces mirandus sp. nov., a filamentous, anaerobic bacterium isolated from a biogas plant
    Mira Mutschlechner, Nina Lackner, Rudolf Markt, Willi Salvenmoser, Christopher A. Dunlap, Andreas O. Wagner
    Antonie van Leeuwenhoek.2021; 114(1): 45.     CrossRef
  • Enrichment and physiological characterization of a novel comammox Nitrospira indicates ammonium inhibition of complete nitrification
    Dimitra Sakoula, Hanna Koch, Jeroen Frank, Mike S M Jetten, Maartje A H J van Kessel, Sebastian Lücker
    The ISME Journal.2021; 15(4): 1010.     CrossRef
  • Pontixanthobacter rizhaonensis sp. nov., a marine bacterium isolated from surface seawater of the Yellow Sea, and proposal of Pseudopontixanthobacter gen. nov., Pseudopontixanthobacter confluentis comb. nov. and Pseudopontixanthobacter sedimi
    Ang Liu, Qing-Jie Xue, Shi-Gen Li, Yan-Jiao Zhang
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Burkholderia species in human infections in Mexico: Identification of B. cepacia, B. contaminans, B. multivorans, B. vietnamiensis,B. pseudomallei and a new Burkholderia species
    Georgina Meza-Radilla, Violeta Larios-Serrato, Rigoberto Hernández-Castro, J. Antonio Ibarra, Paulina Estrada-de los Santos, Yunn-Hwen Gan
    PLOS Neglected Tropical Diseases.2021; 15(6): e0009541.     CrossRef
  • Chryseobacterium caseinilyticum sp. nov., a casein hydrolyzing bacterium isolated from rice plant and emended description of Chryseobacterium piscicola
    Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Minchung Kang, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Genome-Based Taxonomic Rearrangement of the Order Geobacterales Including the Description of Geomonas azotofigens sp. nov. and Geomonas diazotrophica sp. nov.
    Zhenxing Xu, Yoko Masuda, Xueding Wang, Natsumi Ushijima, Yutaka Shiratori, Keishi Senoo, Hideomi Itoh
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Description of Ornithinimicrobium ciconiae sp. nov., and Ornithinimicrobium avium sp. nov., isolated from the faeces of the endangered and near-threatened birds
    So-Yeon Lee, Hojun Sung, Pil Soo Kim, Hyun Sik Kim, Jae-Yun Lee, June-Young Lee, Yun-Seok Jeong, Euon Jung Tak, Jeong Eun Han, Dong-Wook Hyun, Jin-Woo Bae
    Journal of Microbiology.2021; 59(11): 978.     CrossRef
  • CAZymes in Maribacter dokdonensis 62–1 From the Patagonian Shelf: Genomics and Physiology Compared to Related Flavobacteria and a Co-occurring Alteromonas Strain
    Laura A. Wolter, Maximilian Mitulla, Jovan Kalem, Rolf Daniel, Meinhard Simon, Matthias Wietz
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Gephyromycinifex aptenodytis gen. nov., sp. nov., isolated from gut of Antarctic emperor penguin Aptenodytes forsteri
    Wen-Zhuo Zhu, Ya-Ming Ge, Hui-Min Gao, Jun Dai, Xiao-Ling Zhang, Qiao Yang
    Antonie van Leeuwenhoek.2021; 114(12): 2003.     CrossRef
  • Roseibium litorale sp. nov., isolated from a tidal flat sediment and proposal for the reclassification of Labrenzia polysiphoniae as Roseibium polysiphoniae comb. nov.
    Yang Liu, Tao Pei, Juan Du, Meijie Chao, Ming-Rong Deng, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Enrichment of novel Verrucomicrobia, Bacteroidetes, and Krumholzibacteria in an oxygen‐limited methane‐ and iron‐fed bioreactor inoculated with Bothnian Sea sediments
    Paula Dalcin Martins, Anniek de Jong, Wytze K. Lenstra, Niels A. G. M. van Helmond, Caroline P. Slomp, Mike S. M. Jetten, Cornelia U. Welte, Olivia Rasigraf
    MicrobiologyOpen.2021;[Epub]     CrossRef
  • Description of Acinetobacter kanungonis sp. nov., based on phylogenomic analysis
    Lipika Das, Sushanta Deb, Subrata K. Das
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Inhella proteolytica sp. nov. and Inhella gelatinilytica sp. nov., two novel species of the genus Inhella isolated from aquaculture water
    Yang Liu, Tao Pei, Juan Du, Ming-Rong Deng, Honghui Zhu
    Archives of Microbiology.2021; 203(6): 3191.     CrossRef
  • Variimorphobacter saccharofermentans gen. nov., sp. nov., a new member of the family Lachnospiraceae, isolated from a maize-fed biogas fermenter
    Regina Rettenmaier, Nils Thieme, Johanna Streubel, Luca Di Bello, Marie-Louise Kowollik, Liren Huang, Irena Maus, Andreas Klingl, Wolfgang Liebl, Vladimir V. Zverlov
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Crateriforma spongiae sp. nov., isolated from a marine sponge and emended description of the genus “Crateriforma”
    Gaurav Kumar, Dhanesh Kumar, U. Jagadeeshwari, P. K. Sreya, A. Shabbir, Ch. Sasikala, Ch. V. Ramana
    Antonie van Leeuwenhoek.2021; 114(4): 341.     CrossRef
  • Characterization of Sulfurimonas hydrogeniphila sp. nov., a Novel Bacterium Predominant in Deep-Sea Hydrothermal Vents and Comparative Genomic Analyses of the Genus Sulfurimonas
    Shasha Wang, Lijing Jiang, Qitao Hu, Liang Cui, Bitong Zhu, Xiaoteng Fu, Qiliang Lai, Zongze Shao, Suping Yang
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Elizabethkingia argenteiflava sp. nov., isolated from the pod of soybean, Glycine max
    Jun-Hee Hwang, Jihyeon Kim, Jae-heon Kim, SangJoon Mo
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Clostridium fessum sp. nov., isolated from human faeces
    Boram Seo, Kyungchan Jeon, Inwoo Baek, Yung Mi Lee, Kiwoon Baek, GwangPyo Ko
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • A sulfate-reducing bacterial genus, Desulfosediminicola gen. nov., comprising two novel species cultivated from tidal-flat sediments
    Jaeho Song, Juchan Hwang, Ilnam Kang, Jang-Cheon Cho
    Scientific Reports.2021;[Epub]     CrossRef
  • Hyphomicrobium album sp. nov., isolated from mountain soil and emended description of genus Hyphomicrobium
    Qing Xu, Yuxiao Zhang, Xing Wang, Gejiao Wang
    Archives of Microbiology.2021; 203(10): 5931.     CrossRef
  • Bowmanella yangjiangensis sp. nov. and Amphritea pacifica sp. nov., isolated from mariculture fishponds in China
    Zhipeng Cai, Huibin Lu, Youfeng Qian, Letian Chen, Meiying Xu
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Dyella telluris sp. nov. and Dyella acidiphila sp. nov., isolated from forest soil of Dinghushan Biosphere Reserve, China
    Tao Huang, Jia-cheng Fu, Shuo-han Dong, Qiu-mei Zhang, Ting-ting Wu, Li-hong Qiu
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Noviherbaspirillum pedocola sp. nov., isolated from oil-contaminated experimental soil
    Dhiraj Kumar Chaudhary, Ram Hari Dahal, Yongseok Hong
    Archives of Microbiology.2021; 203(6): 3071.     CrossRef
  • Reclassification of Facklamia ignava, Facklamia sourekii and Facklamia tabacinasalis as Falseniella ignava gen. nov., comb. nov., Hutsoniella sourekii gen. nov., comb. nov., and Ruoffia tabacinasalis gen. nov., comb. nov., and description of Ruoffia halot
    Rashmi Fotedar, Krithivasan Sankaranarayanan, Matthew E. Caldwell, Aisha Zeyara, Amina Al Malki, Ridhima Kaul, Hamad Al Shamari, Mohammad Ali, Masoud Al Marri, Paul A. Lawson
    Antonie van Leeuwenhoek.2021; 114(8): 1181.     CrossRef
  • Reconstructing Draft Genomes Using Genome Resolved Metagenomics Reveal Arsenic Metabolizing Genes and Secondary Metabolites in Fresh Water Lake in Eastern India
    Samrat Ghosh, Aditya Narayan Sarangi, Mayuri Mukherjee, Deeksha Singh, Madduluri Madhavi, Sucheta Tripathy
    Bioinformatics and Biology Insights.2021;[Epub]     CrossRef
  • Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
    Plinio S. Vieira, Isabela M. Bonfim, Evandro A. Araujo, Ricardo R. Melo, Augusto R. Lima, Melissa R. Fessel, Douglas A. A. Paixão, Gabriela F. Persinoti, Silvana A. Rocco, Tatiani B. Lima, Renan A. S. Pirolla, Mariana A. B. Morais, Jessica B. L. Correa, L
    Nature Communications.2021;[Epub]     CrossRef
  • Mesobacillus aurantius sp. nov., isolated from an orange-colored pond near a solar saltern
    Anusha Rai, N. Smita, A. Shabbir, U. Jagadeeshwari, T. Keertana, Ch. Sasikala, Ch. V. Ramana
    Archives of Microbiology.2021; 203(4): 1499.     CrossRef
  • Paenibacillus foliorum sp. nov., Paenibacillus phytohabitans sp. nov., Paenibacillus plantarum sp. nov., Paenibacillus planticolens sp. nov., Paenibacillus phytorum sp. nov. and Paenibacillus germinis sp. nov., isolated from the Arabidopsis t
    Shan Shan Qi, Margo Cnockaert, Aurélien Carlier, Peter A. Vandamme
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Marinobacter orientalis sp. nov., a thiosulfate-oxidizing bacterium isolated from a marine solar saltern
    Feng-Bai Lian, Xu-Yang Chen, Shan Jiang, Guang-Yu Li, Zong-Jun Du
    Antonie van Leeuwenhoek.2021; 114(6): 765.     CrossRef
  • Cold-Active Shewanella glacialimarina TZS-4T nov. Features a Temperature-Dependent Fatty Acid Profile and Putative Sialic Acid Metabolism
    Muhammad Suleman Qasim, Mirka Lampi, Minna-Maria K. Heinonen, Berta Garrido-Zabala, Dennis H. Bamford, Reijo Käkelä, Elina Roine, Leif Peter Sarin
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Descriptions of Roseiconus nitratireducens gen. nov. sp. nov. and Roseiconus lacunae sp. nov.
    Dhanesh Kumar, Gaurav Kumar, Jagadeeshwari Uppada, Shabbir Ahmed, Chintalapati Sasikala, Chintalapati Venkata Ramana
    Archives of Microbiology.2021; 203(2): 741.     CrossRef
  • Comparative Genome Analysis of Bacillus amyloliquefaciens Focusing on Phylogenomics, Functional Traits, and Prevalence of Antimicrobial and Virulence Genes
    Hualin Liu, Vimalkumar Prajapati, Shobha Prajapati, Harsh Bais, Jianguo Lu
    Frontiers in Genetics.2021;[Epub]     CrossRef
  • Taibaiella lutea sp. nov., Isolated from Ubiquitous Weedy Grass
    Geeta Chhetri, Inhyup Kim, Jiyoun Kim, Minchung Kang, Taegun Seo
    Current Microbiology.2021; 78(7): 2799.     CrossRef
  • Marinobacter shengliensis subsp. alexandrii Subsp. Nov., Isolated from Cultivable Phycosphere Microbiota of Highly Toxic Dinoflagellate Alexandrium catenella LZT09 and Description of Marinobacter shengliensis Subsp. shengliensis Subsp. Nov
    Xi Yang, Rong Xiang, Nurhezreen Md Iqbal, Yu-Han Duan, Xiao-Ai Zhang, Lei Wang, Lin-Zeng Yu, Jia-Zhou Li, Ming-Fei Sun, Qiao Yang, Chun-Tian Zheng, Shen-Quan Liao
    Current Microbiology.2021; 78(4): 1648.     CrossRef
  • Assessment of Erythrobacter Species Diversity through Pan-Genome Analysis with Newly Isolated Erythrobacter sp. 3-20A1M
    Sang-Hyeok Cho, Yujin Jeong, Eunju Lee, So-Ra Ko, Chi-Yong Ahn, Hee-Mock Oh, Byung-Kwan Cho, Suhyung Cho
    Journal of Microbiology and Biotechnology.2021; 31(4): 601.     CrossRef
  • Phylotaxogenomics for the Reappraisal of the Genus Roseomonas With the Creation of Six New Genera
    Anusha Rai, Uppada Jagadeeshwari, Gupta Deepshikha, Nandardhane Smita, Chintalapati Sasikala, Chintalapati Venkata Ramana
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Zafaria cholistanensis gen. nov. sp. nov., a moderately thermotolerant and halotolerant actinobacterium isolated from Cholistan desert soil of Pakistan
    Arshia Amin, Iftikhar Ahmed, Nauman Khalid, Peter Schumann, Hans-Jürgen Busse, Inam Ullah Khan, Ahmad Ali, Shuai Li, Wen-Jun Li
    Archives of Microbiology.2021; 203(4): 1717.     CrossRef
  • Sphingomonas sabuli sp. nov., a carotenoid-producing bacterium isolated from beach sand
    Minchung Kang, Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Gut microbiome drives individual memory variation in bumblebees
    Li Li, Cwyn Solvi, Feng Zhang, Zhaoyang Qi, Lars Chittka, Wei Zhao
    Nature Communications.2021;[Epub]     CrossRef
  • Qipengyuania soli sp. nov., Isolated from Mangrove Soil
    Yang Liu, Tao Pei, Ming-Rong Deng, Honghui Zhu
    Current Microbiology.2021; 78(7): 2806.     CrossRef
  • Description of Microbacterium luteum sp. nov., Microbacterium cremeum sp. nov., and Microbacterium atlanticum sp. nov., three novel C50 carotenoid producing bacteria
    Fuquan Xie, Siwen Niu, Xihuang Lin, Shengxiang Pei, Li Jiang, Yun Tian, Gaiyun Zhang
    Journal of Microbiology.2021; 59(10): 886.     CrossRef
  • Arthrobacter cheniae and Arthrobacter frigidicola sp. nov., isolated from a glacier
    Lei-Lei Yang, Hong-Can Liu, Qing Liu, Yu-Hua Xin
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Stappia albiluteola sp. nov., isolated from marine sediment
    Shan Jiang, You-Yang Sun, Feng-Bai Lian, Xiao-Kui Zhang, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Flagellatimonas centrodinii gen. nov., sp. nov., a novel member of the family Nevskiaceae isolated from toxin-producing dinoflagellate Centrodinium punctatum
    Yue Jiang, Lingmin Jiang, Yuxin Peng, Ki-Hyun Kim, Hyeon Ho Shin, Young-Min Kim, Jiyoung Lee, Zhun Li
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Adlercreutzia hattorii sp. nov., an equol non-producing bacterium isolated from human faeces
    Mitsuo Sakamoto, Nao Ikeyama, Masahiro Yuki, Takumi Murakami, Hiroshi Mori, Takao Iino, Moriya Ohkuma
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Anaerosporobacter faecicola sp. nov. isolated from faeces of Korean cow
    Seung-Hyeon Choi, Jam-Eon Park, Ji Young Choi, Ji-Sun Kim, Se Won Kang, Jiyoung Lee, Mi-Kyung Lee, Jung-Sook Lee, Ju Huck Lee, Hyunjung Jung, Tai-Young Hur, Hyeun Bum Kim, Ju-Hoon Lee, Jae-Kyung Kim, Seung-Hwan Park
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Marixanthomonas spongiae sp. nov., isolated from marine sponge
    Lingping Zhuang, Haiyue Pang, Li Xu, Dan Chen
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Alkalihalobacterium elongatum gen. nov. sp. nov.: An Antibiotic-Producing Bacterium Isolated From Lonar Lake and Reclassification of the Genus Alkalihalobacillus Into Seven Novel Genera
    Amaraja Joshi, Sonia Thite, Prachi Karodi, Neetha Joseph, Tushar Lodha
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Aliidiomarina indica sp. nov., isolated from deep seawater
    Lei Song, Hongcan Liu, Ying Huang, Xin Dai, Yuguang Zhou
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • First description outside Europe of the emergent pathogen Vibrio europaeus in shellfish aquaculture
    Rodrigo Rojas, Andrés Blanco-Hortas, Hannah Kehlet-Delgado, Alberto Lema, Claudio D. Miranda, Jaime Romero, Paulino Martínez, Juan L. Barja, Javier Dubert
    Journal of Invertebrate Pathology.2021; 180: 107542.     CrossRef
  • Chryseoglobus indicus sp. nov., isolated from deep sea water
    Shengxiang Pei, Fuquan Xie, Wenjing Wang, Shuang Zhang, Gaiyun Zhang
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Sphingosinicella flava sp. nov., indole acetic acid producing bacteria isolated from maize field soil
    Geeta Chhetri, Minchung Kang, Jiyoun Kim, Inhyup Kim, Yoonseop So, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Duganella aceris sp. nov., isolated from tree sap and proposal to transfer of Rugamonas aquatica and Rugamonas rivuli to the genus Duganella as Duganella aquatica comb. nov., with the emended description of the genus Rugamonas
    Dabin Jeon, In Seop Kim, Hanna Choe, Ji-Sun Kim, Soon Dong Lee
    Archives of Microbiology.2021; 203(6): 2843.     CrossRef
  • Hymenobacter puniceus sp. nov., radiation resistant bacteria isolated from soil in South Korea
    Yuna Park, Soohyun Maeng, Tuvshinzaya Damdintogtokh, Minji Bang, Hyejin Oh, Sathiyaraj Srinivasan, Myung Kyum Kim
    Antonie van Leeuwenhoek.2021; 114(10): 1647.     CrossRef
  • Tessaracoccus coleopterorum sp. nov., isolated from the intestine of the dark diving beetle, Hydrophilus acuminatus
    Dong-Wook Hyun, Hojun Sung, Pil Soo Kim, Jae-Yun Lee, Yun-Seok Jeong, Ji-Hyun Yun, Jee-Won Choi, Jeong Eun Han, So-Yeon Lee, Euon Jung Tak, June-Young Lee, Hyun Sik Kim, Jin-Woo Bae
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Limnohabitans radicicola sp. nov., a slow-growing bacterium isolated from rhizosphere of rice plant and emended description of the genus Limnohabitans
    Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Minchung Kang, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Distribution and Diversity of Nisin Producing LAB in Fermented Food
    Basista Rabina Sharma, Dharana Jayant, Kumari Rajshee, Yashika Singh, Prakash M. Halami
    Current Microbiology.2021; 78(9): 3430.     CrossRef
  • Chryseobacterium cheonjiense sp. nov., isolated from forest soil
    Dhiraj Kumar Chaudhary, Ram Hari Dahal, Dong-Uk Kim, Jaisoo Kim
    Archives of Microbiology.2021; 203(2): 725.     CrossRef
  • Undibacterium baiyunense sp. nov., Undibacterium curvum sp. nov., Undibacterium fentianense sp. nov., Undibacterium flavidum sp. nov., Undibacterium griseum sp. nov., Undibacterium hunanense sp. nov., Undibacterium luofuense sp. nov., Undibac
    Huibin Lu, Fei Liu, Tongchu Deng, Meiying Xu
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Flavobacterium franklandianum sp. nov. and Flavobacterium gawalongense sp. nov., isolated from glaciers on the Tibetan Plateau
    Qing Liu, Hong-Can Liu, Lei-Lei Yang, Yu-Hua Xin
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Sediminihaliea albiluteola gen. nov., sp. nov., a new member of the family Halieaceae, isolated from marine sediment
    Shan Jiang, Feng-Bai Lian, You-Yang Sun, Xiao-Kui Zhang, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Fusibacter ferrireducens sp. nov., an anaerobic, Fe(Ⅲ)- and sulphur-reducing bacterium isolated from mangrove sediment
    Donghua Qiu, Xiang Zeng, Lingyu Zeng, Guangyu Li, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Geothermobacter hydrogeniphilus sp. nov., a mesophilic, iron(III)-reducing bacterium from seafloor/subseafloor environments in the Pacific Ocean, and emended description of the genus Geothermobacter
    Ileana Pérez-Rodríguez, Jessica K. Choi, Karla Abuyen, Madeline Tyler, Cynthia Ronkowski, Eric Romero, Anthony Trujillo, Jason Tremblay, Isabella Viney, Pratixaben Savalia, Jan P. Amend
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Oryzicola mucosus gen. nov., sp. nov., a novel slime producing bacterium belonging to the family Phyllobacteriaceae isolated from the rhizosphere of rice plants
    Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Minchung Kang, Yoonseop So, Taegun Seo
    Antonie van Leeuwenhoek.2021; 114(11): 1925.     CrossRef
  • Ostreibacterium oceani gen. nov., sp. nov., isolated from oyster, and description of Ostreibacteriaceae fam. nov.
    Chao-Nan Wang, Feng-Qing Wang, Yuan Liu, Ming-Yi Wang, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Salegentibacter maritimus sp. nov., isolated from marine coastal sediment
    Feng-Bai Lian, Shan Jiang, Ke-Lei Zhu, Dan-Dan Shang, Jing Zhang, Zong-Jun Du
    Systematic and Applied Microbiology.2021; 44(3): 126209.     CrossRef
  • Solimonas marina sp. nov., isolated from deep seawater of the Pacific Ocean
    Xiupian Liu, Qiliang Lai, Fengqin Sun, Yaping Du, Yingbao Gai, Guangyu Li, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Phylo-taxogenomics of the genus Tautonia with descriptions of Tautonia marina sp. nov., Tautonia rosea sp. nov., and emended description of the genus
    Kumar Gaurav, Dhanesh Kumar, U. Jagadeeshwari, A. Shabbir, Ch. Sasikala, Ch.V. Ramana
    Systematic and Applied Microbiology.2021; 44(4): 126229.     CrossRef
  • Reclassification of Algibacter wandonensis as a Later Heterotypic Synonym of Algibacter lectus Based on Whole-Genome Sequence Analysis
    Ang Liu, Hui Wang, Yuan-Yuan Yang, Qing-Jie Xue, Xiu-Zhen Li
    Current Microbiology.2021; 78(3): 1034.     CrossRef
  • Vibrio ziniensis sp. nov., isolated from mangrove sediments
    Jie Wu, Wu Qu, Qiliang Lai, Shengxiang Pei, Tianyou Zhang, Yan Zhuang, Zhuhua Chan, Runying Zeng
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Parasphingopyxis marina sp. nov. isolated from coastal seawater
    Soo-Yeon Choi, Ji-Sung Oh, Dong-Hyun Roh
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Kushneria phosphatilytica sp. nov., a phosphate-solubilizing bacterium isolated from a solar saltern
    Guang-Xun Du, Ling-Yun Qu, Xu-Guang Hong, Cheng-Hua Li, De-Wen Ding, Ping Gao, Qin-Zeng Xu
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Phylogenomic Analyses of the Genus Pseudomonas Lead to the Rearrangement of Several Species and the Definition of New Genera
    Zaki Saati-Santamaría, Ezequiel Peral-Aranega, Encarna Velázquez, Raúl Rivas, Paula García-Fraile
    Biology.2021; 10(8): 782.     CrossRef
  • Marinobacter alexandrii sp. nov., a novel yellow-pigmented and algae growth-promoting bacterium isolated from marine phycosphere microbiota
    Qiao Yang, Qi Feng, Bao-ping Zhang, Jia-jun Gao, Zhi Sheng, Qi-ping Xue, Xiao-ling Zhang
    Antonie van Leeuwenhoek.2021; 114(6): 709.     CrossRef
  • Multi-Omics Characterization of Host-Derived Bacillus spp. Probiotics for Improved Growth Performance in Poultry
    Dwi Susanti, Alyssa Volland, Nilesh Tawari, Nielson Baxter, Dharanesh Gangaiah, Germán Plata, Akshitha Nagireddy, Troy Hawkins, Shrinivasrao P. Mane, Arvind Kumar
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Salibaculum halophilum gen. nov., sp. nov. and Salibaculum griseiflavum sp. nov., in the family Rhodobacteraceae
    Ke-Lei Zhu, Xiao-Qun Wang, Tian-Shu Zhang, Dan-Dan Shang, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Aquabacterium terrae sp. nov., isolated from soil
    Ram Hari Dahal, Ji Yeon Han, Hyosun Lee, Dhiraj Kumar Chaudhary, Dong-Uk Kim
    Archives of Microbiology.2021; 203(6): 3183.     CrossRef
  • Safety Assessment of Lactiplantibacillus (formerly Lactobacillus) plantarum Q180
    Yoo Jin Kwon, Byung Hee Chun, Hye Su Jung, Jaeryang Chu, Hyunchae Joung, Sung Yurb Park, Byoung Kook Kim, Che Ok Jeon
    Journal of Microbiology and Biotechnology.2021; 31(10): 1420.     CrossRef
  • Collimonas silvisoli sp. nov. and Collimonas humicola sp. nov., two novel species isolated from forest soil
    Jiali Li, Mingkai Pan, Xianjiao Zhang, Yang Zhou, Guang-Da Feng, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Flavobacterium tagetis sp. nov., a novel urea-hydrolysing bacterium isolated from the roots of Tagetes patula
    Geeta Chhetri, Inhyup Kim, Minchung Kang, Jiyoun Kim, Yoonseop So, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Croceicoccus bisphenolivorans sp. nov., a bisphenol A-degrading bacterium isolated from seawater
    Jiangwei Li, Anyi Hu, Min Lv, Chang-Ping Yu
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Vineibacter terrae gen. nov., sp. nov., an ammonium-assimilating and nitrate-reducing bacterium isolated from vineyard soil
    Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Chiu-Chung Young
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Geomesophilobacter sediminis gen. nov., sp. nov., Geomonas propionica sp. nov. and Geomonas anaerohicana sp. nov., three novel members in the family Geobacterecace isolated from river sediment and paddy soil
    Zhengcheng Zhang, Zhenxing Xu, Yoko Masuda, Xueding Wang, Natsumi Ushijima, Yutaka Shiratori, Keishi Senoo, Hideomi Itoh
    Systematic and Applied Microbiology.2021; 44(5): 126233.     CrossRef
  • Rouxiella aceris sp. nov., isolated from tree sap and the emended description of the genus Rouxiella
    Soon Dong Lee, Hong Lim Yang, In Seop Kim
    Antonie van Leeuwenhoek.2021; 114(7): 1013.     CrossRef
  • Pseudomarimonas arenosa gen. nov., sp. nov. isolated from marine sand
    Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Chitinophaga fulva sp. nov., isolated from forest soil
    Ram Hari Dahal, Dhiraj Kumar Chaudhary, Dong-Uk Kim, Jaisoo Kim
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Horizontal Gene Transfer of Genes Encoding Copper-Containing Membrane-Bound Monooxygenase (CuMMO) and Soluble Di-iron Monooxygenase (SDIMO) in Ethane- and Propane-Oxidizing Rhodococcus Bacteria
    Bin Zou, Ying Huang, Pan-Pan Zhang, Xiao-Ming Ding, Huub J. M. Op den Camp, Zhe-Xue Quan, Alfons J. M. Stams
    Applied and Environmental Microbiology.2021;[Epub]     CrossRef
  • Arachidicoccus soli sp. nov., a bacterium isolated from soil
    Shin Ae Lee, Tae-Wan Kim, Mee-Kyung Sang, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Quantitative Real-Time PCR Assay for the Detection of Pectobacterium parmentieri, a Causal Agent of Potato Soft Rot
    Anna A. Lukianova, Peter V. Evseev, Alexander A. Stakheev, Irina B. Kotova, Sergey K. Zavriev, Alexander N. Ignatov, Konstantin A. Miroshnikov
    Plants.2021; 10(9): 1880.     CrossRef
  • Phylogenomic Framework for Taxonomic Delineation of Paracoccus spp. and Exploration of Core-Pan Genome
    Akshita Puri, Abhay Bajaj, Sukanya Lal, Yogendra Singh, Rup Lal
    Indian Journal of Microbiology.2021; 61(2): 180.     CrossRef
  • Echinicola arenosa sp. nov., isolated from marine sand
    Jihye Baek, Veeraya Weerawongwiwat, Jong-Hwa Kim, Jung-Hoon Yoon, Jung-Sook Lee, Ampaitip Sukhoom, Wonyong Kim
    Archives of Microbiology.2021; 203(9): 5675.     CrossRef
  • Cold-shock gene cspC in the genome of Massilia polaris sp. nov. revealed cold-adaptation
    Ram Hari Dahal, Dhiraj Kumar Chaudhary, Dong-Uk Kim, Jaisoo Kim
    Antonie van Leeuwenhoek.2021; 114(8): 1275.     CrossRef
  • Complete genome sequence of Streptomyces sp. HSG2 from rhizosphere soil of mangrove in Qingmei Gang, Sanya
    Shengxiang Pei, Siwen Niu, Fuquan Xie, Shuang Zhang, Wenjing Wang, Gaiyun Zhang
    Archives of Microbiology.2021; 203(6): 3519.     CrossRef
  • Martelella alba sp. nov., isolated from mangrove rhizosphere soil within the Beibu Gulf
    Mi Li, Chenghai Gao, Yuyao Feng, Kai Liu, Pei Cao, Yonghong Liu, Xiangxi Yi
    Archives of Microbiology.2021; 203(4): 1779.     CrossRef
  • Photobacterium arenosum sp. nov., isolated from marine sediment sand
    Veeraya Weerawongwiwat, Seokmin Yoon, Jong-Hwa Kim, Jung-Hoon Yoon, Jung Sook Lee, Ampaitip Sukhoom, Wonyong Kim
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Oricola thermophila sp. nov., a marine bacterium isolated from tidal flat sediment and emended description of the genus Oricola Hameed et al. 2015
    Sung-Hyun Yang, Mi-Jeong Park, Kae Kyoung Kwon
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Zeimonas arvi gen. nov., sp. nov., of the family Burkholderiaceae, harboring biphenyl- and phenolic acid-metabolizing genes, isolated from a long-term ecological research field
    Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Chiu-Chung Young
    Antonie van Leeuwenhoek.2021; 114(12): 2101.     CrossRef
  • Chitinilyticum piscinae sp. nov., isolated from aquaculture water
    Tao Pei, Juan Du, Yang Liu, Ming-Rong Deng, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Usitatibacter rugosus gen. nov., sp. nov. and Usitatibacter palustris sp. nov., novel members of Usitatibacteraceae fam. nov. within the order Nitrosomonadales isolated from soil
    Selma Vieira, Katharina J. Huber, Meina Neumann-Schaal, Alicia Geppert, Manja Luckner, Gerhard Wanner, Jörg Overmann
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Caenimonas soli sp. nov., isolated from soil
    Ram Hari Dahal, Hyosun Lee, Dhiraj Kumar Chaudhary, Dae-Young Kim, Jigwan Son, Jaisoo Kim, Jong-Ok Ka, Dong-Uk Kim
    Archives of Microbiology.2021; 203(3): 1123.     CrossRef
  • Coprobacter secundus subsp. similis subsp. nov. and Solibaculum mannosilyticum gen. nov., sp. nov., isolated from human feces
    Mitsuo Sakamoto, Nao Ikeyama, Atsushi Toyoda, Takumi Murakami, Hiroshi Mori, Sho Morohoshi, Tadao Kunihiro, Takao Iino, Moriya Ohkuma
    Microbiology and Immunology.2021; 65(6): 245.     CrossRef
  • Mesobacillus harenae sp. nov., isolated from the sandy soil of a cold desert
    Gaosen Zhang, Ruiqi Yang, Tuo Chen, Binglin Zhang, Hui Yang, Xiukun Wu, Haining Gao, Wei Zhang, Guangxiu Liu
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Pedobacter riviphilus sp. nov., isolated from stream sediment
    Hong Sik Im, Yochan Joung, Sang-Seob Lee
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Paraliobacillus salinarum sp. nov., isolated from saline soil in Yingkou, China
    Ya-Lin Yin, Fang-Ling Li, Xian-Yuan Du, Ya-Xi Zhang, Lei Wang
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Leucobacter coleopterorum sp. nov., Leucobacter insecticola sp. nov., and Leucobacter viscericola sp. nov., isolated from the intestine of the diving beetles, Cybister brevis and Cybister lewisianus, and emended description of the genus Leucobacter
    Dong-Wook Hyun, Hojun Sung, Pil Soo Kim, Ji-Hyun Yun, Jin-Woo Bae
    Journal of Microbiology.2021; 59(4): 360.     CrossRef
  • Brevibacterium limosum sp. nov., Brevibacterium pigmenatum sp. nov., and Brevibacterium atlanticum sp. nov., three novel dye decolorizing actinobacteria isolated from ocean sediments
    Shengxiang Pei, Siwen Niu, Fuquan Xie, Wenjing Wang, Shuang Zhang, Gaiyun Zhang
    Journal of Microbiology.2021; 59(10): 898.     CrossRef
  • Saccharobesus litoralis gen. nov., sp. nov., a novel alginate-degrading bacterium isolated from the surface of intertidal algal turf
    Rosyada Amran Amrina, Go Furusawa, Nyok-Sean Lau
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Sphingopyxis microcysteis sp. nov., a novel bioactive exopolysaccharides-bearing Sphingomonadaceae isolated from the Microcystis phycosphere
    Xiao-ling Zhang, Gui-xian Li, Ya-ming Ge, Nurhezreen Md Iqbal, Xi Yang, Zhen-dong Cui, Qiao Yang
    Antonie van Leeuwenhoek.2021; 114(6): 845.     CrossRef
  • Aquisphaera insulae sp. nov., a new member in the family Isosphaeraceae, isolated from the floating island of Loktak lake and emended description of the genus Aquisphaera
    Gaurav Kumar, Khongsai L. Lhingjakim, Jagadeeshwari Uppada, Shabbir Ahamad, Dhanesh Kumar, Gulam Mohammad Kashif, Chintalapati Sasikala, Chintalapati Venkata Ramana
    Antonie van Leeuwenhoek.2021; 114(9): 1465.     CrossRef
  • Description of Lujinxingia vulgaris sp. nov., isolated from coastal sediment via prey-traps
    Shuo Wang, Da-Shuai Mu, Guang-Yu Li, Zong-Jun Du
    Antonie van Leeuwenhoek.2021; 114(11): 1805.     CrossRef
  • Novosphingobium olei sp. nov., with the ability to degrade diesel oil, isolated from oil-contaminated soil and proposal to reclassify Novosphingobium stygium as a later heterotypic synonym of Novosphingobium aromaticivorans
    Dhiraj Kumar Chaudhary, Ram Hari Dahal, Dong-Uk Kim, Jaisoo Kim
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Pontibacter aquaedesilientis sp. nov., isolated from Jeongbang Waterfall, Jeju Island
    Geeta Chhetri, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Aeromicrobium terrae sp. nov., isolated from a maize field
    Shih-Yao Lin, Chia-Fang Tsai, Asif Hameed, Chiu-Chung Young
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis
    Jihyeon Kim, Seong-In Na, Dongwook Kim, Jongsik Chun
    Journal of Microbiology.2021; 59(6): 609.     CrossRef
  • Engineering Vibrio sp. SP1 for the production of carotenoids directly from brown macroalgae
    Sungwoo Park, Sung Won Cho, Yungyu Lee, Mincheol Choi, Jina Yang, Hojun Lee, Sang Woo Seo
    Computational and Structural Biotechnology Journal.2021; 19: 1531.     CrossRef
  • Aquabacterium soli sp. nov., a novel bacterium isolated from soil under the long-term application of bifenthrin
    Lina Sun, Wei Chen, Kaihua Huang, Weiguang Lyu, Xinhua Gao
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Permianibacter fluminis sp. nov., isolated from a freshwater stream
    Miri S. Park, Jaeho Song, Jaeho Chang, Yochan Joung, Ilnam Kang, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Description of Cohnella zeiphila sp. nov., a bacterium isolated from maize callus cultures
    Eric T. Johnson, Patrick F. Dowd, Christopher D. Skory, Christopher A. Dunlap
    Antonie van Leeuwenhoek.2021; 114(1): 37.     CrossRef
  • Mesorhizobium microcysteis sp. nov., isolated from a culture of Microcystis aeruginosa
    Jaejoon Jung, Ye Lin Seo, Kyeong Ryeol Kim, Hye Yoon Park, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Sphingobacterium micropteri sp. nov. and Sphingobacterium litopenaei sp. nov., isolated from aquaculture water
    Mingxia Zhang, Anzhang Li, Shuaishuai Xu, Meng Chen, Qing Yao, Botao Xiao, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Maritimibacter alexandrii sp. nov., a New Member of Rhodobacteraceae Isolated from Marine Phycosphere
    Xing Wang, Yun Ye, Fei-Fei Xu, Yu-Han Duan, Peng-Fei Xie, Qiao Yang, Xiao-Ling Zhang
    Current Microbiology.2021; 78(11): 3996.     CrossRef
  • Mucilaginibacter glaciei sp. nov. and Mucilaginibacter pankratovii sp. nov., isolated from a glacier on the Tibetan Plateau
    Lei-Lei Yang, Yu Pang, Hong-Can Liu, Yu-Hua Xin, Qing Liu
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Pedobacter endophyticus sp. nov., an endophytic bacterium isolated from Carex pumila
    Yuxin Peng, Lingmin Jiang, Jiyoon Seo, Zhun Li, Hanna Choe, Jae Cheol Jeong, Suk Weon Kim, Young-Min Kim, Cha Young Kim, Jiyoung Lee
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Zongyanglinia huanghaiensis gen. nov., sp. nov., a novel denitrifying bacterium isolated from the yellow sea, and transfer of Pelagicola marinus to Zongyanglinia gen. nov. as Zongyanglinia marinus comb. nov
    Lili Xu, Ang Liu, Yan-Jiao Zhang
    Antonie van Leeuwenhoek.2021; 114(2): 137.     CrossRef
  • Pyomelanin-Producing Brevundimonas vitisensis sp. nov., Isolated From Grape (Vitis vinifera L.)
    Lingmin Jiang, Doeun Jeon, Jueun Kim, Chul Won Lee, Yuxin Peng, Jiyoon Seo, Ju Huck Lee, Jin Hyub Paik, Cha Young Kim, Jiyoung Lee
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Belnapia mucosa sp. nov. and Belnapia arida sp. nov., isolated from desert biocrust
    Esther Molina-Menor, Àngela Vidal-Verdú, Leila Satari, Alba Calonge-García, Javier Pascual, Juli Peretó, Manuel Porcar
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Nocardioides donggukensis sp. nov. and Hyunsoonleella aquatilis sp. nov., isolated from Jeongbang Waterfall on Jeju Island
    Inhyup Kim, Geeta Chhetri, Jiyoun Kim, Minchung Kang, Yoonseop So, Byungjo Lee, Wonhee Jang, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Yangia mangrovi sp. nov., a novel member of the Roseobacter clade isolated from mangrove soil and emended description of Yangia pacifica Dai et al. 2006
    Ashish Verma, Shiva S. Sundharam, Yash Pal, Bhawana Bisht, Pooja Yadav, Srinivasan Krishnamurthi
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Draft genome of a novel methanotrophic Methylobacter sp. from the volcanic soils of Pantelleria Island
    Carmen Hogendoorn, Nunzia Picone, Femke van Hout, Sophie Vijverberg, Lianna Poghosyan, Theo A. van Alen, Jeroen Frank, Arjan Pol, Antonia L. Gagliano, Mike S. M. Jetten, Walter D’Alessandro, Paola Quatrini, Huub J. M. Op den Camp
    Antonie van Leeuwenhoek.2021; 114(3): 313.     CrossRef
  • Strain-Specific Identification and In Vivo Immunomodulatory Activity of Heat-Killed Latilactobacillus sakei K040706
    Kyung-Sook Chung, Jae Woong Choi, Ji-Sun Shin, Seo-Yeon Kim, Hee-Soo Han, Su-Yeon Kim, Kwang-Young Lee, Joo-Yeon Kang, Chang-Won Cho, Hee-Do Hong, Young Kyoung Rhee, Kyung-Tae Lee
    Foods.2021; 10(12): 3034.     CrossRef
  • Zophobihabitans entericus gen. nov., sp. nov., a new member of the family Orbaceae isolated from the gut of a superworm Zophobas morio
    Chih-Horng Kuo, Pin-Yun Huang, Shih-Yi Sheu, Der-Shyan Sheu, Li-Cheng Jheng, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology.2021;[Epub]     CrossRef
  • Description of Vagococcus coleopterorum sp. nov., isolated from the intestine of the diving beetle, Cybister lewisianus, and Vagococcus hydrophili sp. nov., isolated from the intestine of the dark diving beetle, Hydrophilus acuminatus, and emended descrip
    Dong-Wook Hyun, Euon Jung Tak, Pil Soo Kim, Jin-Woo Bae
    Journal of Microbiology.2021; 59(2): 132.     CrossRef
  • Devosia aurantiaca sp. nov., Isolated from Mountain Soil and Proposal of Albitalea gen. nov. to Replace the Illegitimate Prokaryotic Genus Name Geomonas Khan et al. 2020
    Shehzad Abid Khan, Hyung Min Kim, Byung Hee Chun, Che Ok Jeon
    Current Microbiology.2021; 78(7): 2548.     CrossRef
  • An atlas of bacterial secondary metabolite biosynthesis gene clusters
    Bin Wei, Ao‐Qi Du, Zhen‐Yi Zhou, Cong Lai, Wen‐Chao Yu, Jin‐Biao Yu, Yan‐Lei Yu, Jian‐Wei Chen, Hua‐Wei Zhang, Xue‐Wei Xu, Hong Wang
    Environmental Microbiology.2021; 23(11): 6981.     CrossRef
  • Nesterenkonia sedimenti sp. nov., isolated from marine sediment
    Fuquan Xie, Shengxiang Pei, Yubian Zhang, Yun Tian, Gaiyun Zhang
    Archives of Microbiology.2021; 203(10): 6287.     CrossRef
  • Phylogenomics reveals the evolution of root nodulating alpha- and beta-Proteobacteria (rhizobia)
    Saleh Rahimlou, Mohammad Bahram, Leho Tedersoo
    Microbiological Research.2021; 250: 126788.     CrossRef
  • Mesonia hitae sp. nov., isolated from the seawater of the South Atlantic Ocean
    Ying Zhou, Xiujun Gao, Jingjing Xu, Guizhen Li, Rui Ma, Peisheng Yan, Chunming Dong, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology.2021;[Epub]     CrossRef
  • Microcella flavibacter sp. nov., isolated from marine sediment, and reclassification of Chryseoglobus frigidaquae, Chryseoglobus indicus, and Yonghaparkia alkaliphila as Microcella frigidaquae comb. nov., Microcella indica nom. nov., and Microcella alkali
    Fuquan Xie, Shengxiang Pei, Xiaoyun Huang, Lina Wang, Jinyan Kou, Gaiyun Zhang
    Antonie van Leeuwenhoek.2021; 114(12): 2133.     CrossRef
  • Hongsoonwoonella zoysiae gen. nov., sp. nov., a new member of the family Stappiaceae isolated from a tidal mudflat
    Soon Dong Lee, Sung-Min Kim, Hong Lim Yang, Yeong-Sik Byeon, In Seop Kim
    Archives of Microbiology.2021; 203(4): 1335.     CrossRef
  • Poseidonibacter parvus sp. nov., isolated from a squid
    Min Ji Kim, Min-gyung Baek, Su-Kyoung Shin, Hana Yi
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Methylomonas albis sp. nov. and Methylomonas fluvii sp. nov.: Two cold-adapted methanotrophs from the river Elbe and emended description of the species Methylovulum psychrotolerans
    Ingeborg Bussmann, Fabian Horn, Michael Hoppert, Karl-Walter Klings, Anke Saborowski, Julia Warnstedt, Susanne Liebner
    Systematic and Applied Microbiology.2021; 44(6): 126248.     CrossRef
  • Chitinibacter bivalviorum sp. nov., isolated from the gut of the freshwater mussel Anodonta arcaeformis
    Jee-Won Choi, Jae-Yun Lee, Dong-Wook Hyun, June-Young Lee, Pil Soo Kim, Jeong Eun Han, Yun-Seok Jeong, So-Yeon Lee, Hojun Sung, Euon Jung Tak, Hyun Sik Kim, Jin-Woo Bae
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Aerobic Denitrification and Heterotrophic Sulfur Oxidation in the Genus Halomonas Revealed by Six Novel Species Characterizations and Genome-Based Analysis
    Liping Wang, Zongze Shao
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Horizontal Gene Transfer and Genomic Erosion Shape Functional Differences of the Two-Partner Secretion Toxin Exla in the Genus Pseudomonas
    Viviana Job, Laura Gomez-Valero, Adèle Renier, Christophe Rusniok, Stéphanie Bouillot, Viviane Chenal-Francisque, Erwan Gueguen, Annie Adrait, Mylène Robert-Genthon, Katy Jeannot, Peter Panchev, Sylvie Elsen, Marie-Odile Fauvarque, Yohann Couté, Carmen Bu
    SSRN Electronic Journal .2021;[Epub]     CrossRef
  • Schlegelella koreensis sp. nov., isolated from evaporator core of automobile air conditioning system
    Dhiraj Kumar Chaudhary, Hyosun Lee, Ram Hari Dahal, Dong-Uk Kim
    Archives of Microbiology.2021; 203(5): 2373.     CrossRef
  • Chryseobacterium potabilaquae sp. nov., Chryseobacterium aquaeductus sp. nov. and Chryseobacterium fistulae sp. nov., from drinking water systems
    Teresa Lucena, María A. Ruvira, M. Carmen Macián, David R. Arahal, Rosa Aznar, María J. Pujalte
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Flavobacterium undicola sp. nov., isolated from a freshwater lake
    Wen-Ming Chen, Yi-Ru Xie, Soon-Wo Kwon, Shih-Yi Sheu
    Archives of Microbiology.2021; 203(3): 989.     CrossRef
  • Flavobacterium difficile sp. nov., isolated from a freshwater waterfall
    Wen-Ming Chen, Ya-Xiu You, Chiu-Chung Young, Shih-Yao Lin, Shih-Yi Sheu
    Archives of Microbiology.2021; 203(7): 4449.     CrossRef
  • Salipiger mangrovisoli sp. nov., isolated from mangrove soil and the proposal for the reclassification of Paraphaeobacter pallidus as Salipiger pallidus comb. nov.
    Juan Du, Yang Liu, Tao Pei, Ming-Rong Deng, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Classification of uncultivated anammox bacteria and Candidatus Uabimicrobium into new classes and provisional nomenclature as Candidatus Brocadiia classis nov. and Candidatus Uabimicrobiia classis nov. of the phylum Planctomycetes and novel family Candida
    Tushar Lodha, Simran Narvekar, Prachi Karodi
    Systematic and Applied Microbiology.2021; 44(6): 126272.     CrossRef
  • Sulfurimonas indica sp. nov., a hydrogen- and sulfur-oxidizing chemolithoautotroph isolated from a hydrothermal sulfide chimney in the Northwest Indian Ocean
    Qitao Hu, Shasha Wang, Qiliang Lai, Zongze Shao, Lijing Jiang
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Pontibacter cellulosilyticus sp. nov., a carboxymethyl cellulose-hydrolysing bacterium isolated from coastal water
    Minchung Kang, Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Chitinophaga rhizophila sp. nov., isolated from rhizosphere soil of banana
    Xian-Jiao Zhang, Guang-Da Feng, Fan Yang, Honghui Zhu, Qing Yao
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Jinshanibacter allomyrinae sp. nov., isolated from larvae of Allomyrina dichotoma, proposal of Insectihabitans xujianqingii gen. nov., comb. nov. and emended descriptions of the genera Jinshanibacter, Limnobaculum and Pragia
    Soon Dong Lee, Yeong-Sik Byeon, Sung-Min Kim, Hong Lim Yang, In Seop Kim
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Revealing taxon-specific heavy metal-resistance mechanisms in denitrifying phosphorus removal sludge using genome-centric metaproteomics
    Yuan Lin, Liye Wang, Ke Xu, Kan Li, Hongqiang Ren
    Microbiome.2021;[Epub]     CrossRef
  • Development of qPCR Detection Assay for Potato Pathogen Pectobacterium atrosepticum Based on a Unique Target Sequence
    Anna A. Lukianova, Peter V. Evseev, Alexander A. Stakheev, Irina B. Kotova, Sergey K. Zavriev, Alexander N. Ignatov, Konstantin A. Miroshnikov
    Plants.2021; 10(2): 355.     CrossRef
  • Marivivens aquimaris sp. nov., isolated from seawater
    Jeong Ah Kim, Binna Lee, Ji Young Kang, Jae Jun Song, Jong Hyun Choi
    Archives of Microbiology.2021; 203(6): 3229.     CrossRef
  • Lysobacter arenosi sp. nov. and Lysobacter solisilvae sp. nov. isolated from soil
    Kyeong Ryeol Kim, Kyung Hyun Kim, Shehzad Abid Khan, Hyung Min Kim, Dong Min Han, Che Ok Jeon
    Journal of Microbiology.2021; 59(8): 709.     CrossRef
  • Sediminibacterium soli sp. nov., isolated from soil
    Shijuan Wu, Limin Zhong, Shuijiao Liao, Tengfei Li, Zijie Zhou, Gejiao Wang
    Archives of Microbiology.2021; 203(3): 967.     CrossRef
  • Rhodobacter amnigenus sp. nov. and Rhodobacter ruber sp. nov., isolated from freshwater habitats
    Wen-Ming Chen, Ting-Hsuan Chang, Che-Chia Yang, Der-Shyan Sheu, Li-Cheng Jheng, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology.2021;[Epub]     CrossRef
  • Alcanivorax profundimaris sp. nov., a Novel Marine Hydrocarbonoclastic Bacterium Isolated from Seawater and Deep-Sea Sediment
    Chunming Dong, Qiliang Lai, Xiupian Liu, Li Gu, Yu Zhang, Zhangxian Xie, Dazhi Wang, Zongze Shao
    Current Microbiology.2021; 78(3): 1053.     CrossRef
  • Ornithobacterium rhinotracheale: MALDI-TOF MS and Whole Genome Sequencing Confirm That Serotypes K, L and M Deviate from Well-Known Reference Strains and Numerous Field Isolates
    Merima Alispahic, Lukas Endler, Michael Hess, Claudia Hess
    Microorganisms.2021; 9(5): 1006.     CrossRef
  • Geomonas silvestris sp. nov., Geomonas paludis sp. nov. and Geomonas limicola sp. nov., isolated from terrestrial environments, and emended description of the genus Geomonas
    Hideomi Itoh, Zhenxing Xu, Yoko Masuda, Natsumi Ushijima, Chie Hayakawa, Yutaka Shiratori, Keishi Senoo
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Marinobacter mangrovi sp. nov., isolated from mangrove sediment
    En Yi, Zongze Shao, Guizhen Li, Xiaobo Liang, Meixian Zhou
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Paraneptunicella aestuarii gen. nov., sp. nov., a member of the family Alteromonadaceae isolated from seawater in East China Sea
    Yanzhu Zhang, Shufen He, Liufei Shi, Yang Liu, Deqiang Mao, Biying Liu, Xiaoping He, Bahareh Nowruzi, Dawoon Jung, Weiyan Zhang, Lijian Ding, Shan He, Liwei Liu
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Sulfurimonas sediminis sp. nov., a novel hydrogen- and sulfur-oxidizing chemolithoautotroph isolated from a hydrothermal vent at the Longqi system, southwestern Indian ocean
    Shasha Wang, Zongze Shao, Qiliang Lai, Xuewen Liu, Shaobin Xie, Lijing Jiang, Suping Yang
    Antonie van Leeuwenhoek.2021; 114(6): 813.     CrossRef
  • Dyadobacter sandarakinus sp. nov., isolated from Arctic tundra soil, and emended descriptions of Dyadobacter alkalitolerans, Dyadobacter koreensis and Dyadobacter psychrophilus
    Yongping Zhang, Xiaoya Peng, Kun Qin, Jia Liu, Qiang Xu, Jingjing Niu, Yanyan Zheng, Fang Peng
    International Journal of Systematic and Evolutionary Microbiology .2021;[Epub]     CrossRef
  • Current Status and Future Strategies to Increase Secondary Metabolite Production from Cyanobacteria
    Yujin Jeong, Sang-Hyeok Cho, Hookeun Lee, Hyung-Kyoon Choi, Dong-Myung Kim, Choul-Gyun Lee, Suhyung Cho, Byung-Kwan Cho
    Microorganisms.2020; 8(12): 1849.     CrossRef
  • Description of Three Novel Members in the Family Geobacteraceae, Oryzomonas japonicum gen. nov., sp. nov., Oryzomonas sagensis sp. nov., and Oryzomonas ruber sp. nov.
    Zhenxing Xu, Yoko Masuda, Chie Hayakawa, Natsumi Ushijima, Keisuke Kawano, Yutaka Shiratori, Keishi Senoo, Hideomi Itoh
    Microorganisms.2020; 8(5): 634.     CrossRef
  • Hypericibacter terrae gen. nov., sp. nov. and Hypericibacter adhaerens sp. nov., two new members of the family Rhodospirillaceae isolated from the rhizosphere of Hypericum perforatum
    Zahra Noviana, Selma Vieira, Javier Pascual, Serge Alain Tanemossu Fobofou, Manfred Rohde, Cathrin Spröer, Boyke Bunk, Jorg Overmann
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(3): 1850.     CrossRef
  • Mucilaginibacter celer sp. nov. and Aquirhabdus parva gen. nov., sp. nov., isolated from freshwater
    MinJi Kim, Su-Kyoung Shin, Hana Yi
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5479.     CrossRef
  • Methylotenera oryzisoli sp. nov., a lanthanide-dependent methylotrophic bacteria isolated from rice field soil
    Haoxin Lv, Nurettin Sahin, Akio Tani
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(4): 2713.     CrossRef
  • Lewinella aurantiaca sp. nov., a carotenoid pigment-producing bacterium isolated from surface seawater
    Inhyup Kim, Geeta Chhetri, Jiyoun Kim, Minchung Kang, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(12): 6180.     CrossRef
  • Pseudomonas kitaguniensis sp. nov., a pathogen causing bacterial rot of Welsh onion in Japan
    Hiroyuki Sawada, Takashi Fujikawa, Yoshie Nishiwaki, Harukuni Horita
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(5): 3018.     CrossRef
  • Sandaracinomonas limnophila gen. nov., sp. nov., a new member of the family Cytophagaceae isolated from a freshwater mesocosm
    Wen-Ming Chen, Cheng-Ye Cai, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(4): 2178.     CrossRef
  • Use of Newly Designed Primers for Quantification of Complete Ammonia-Oxidizing (Comammox) Bacterial Clades and Strict Nitrite Oxidizers in the Genus Nitrospira
    Ran Jiang, Jian-Gong Wang, Ting Zhu, Bin Zou, Dan-Qi Wang, Sung-Keun Rhee, Dong An, Zhi-Yuan Ji, Zhe-Xue Quan, Alfons J. M. Stams
    Applied and Environmental Microbiology.2020;[Epub]     CrossRef
  • Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum
    Regina Rettenmaier, Martina Schneider, Bernhard Munk, Michael Lebuhn, Sebastian Jünemann, Alexander Sczyrba, Irena Maus, Vladimir Zverlov, Wolfgang Liebl
    Microorganisms.2020; 8(6): 915.     CrossRef
  • Flavobacterium restrictum sp. nov., Flavobacterium rhamnosiphilum sp. nov., and Flavobacterium zepuense sp. nov. isolated from glaciers
    Guo-Qing Zhang, Lei-Lei Yang, Qing Liu, Hong-Can Liu, Yu-Guang Zhou, Yu-Hua Xin
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(8): 4583.     CrossRef
  • Arenimonas terrae sp. nov., isolated from orchard soil
    Dong Min Han, Byung Hee Chun, Hyung Min Kim, Shehzad Abid Khan, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(1): 537.     CrossRef
  • Morphologically Different Pectobacterium brasiliense Bacteriophages PP99 and PP101: Deacetylation of O-Polysaccharide by the Tail Spike Protein of Phage PP99 Accompanies the Infection
    Anna A. Lukianova, Mikhail M. Shneider, Peter V. Evseev, Anna M. Shpirt, Eugenia N. Bugaeva, Anastasia P. Kabanova, Ekaterina A. Obraztsova, Kirill K. Miroshnikov, Sofiya N. Senchenkova, Alexander S. Shashkov, Stepan V. Toschakov, Yuriy A. Knirel, Alexand
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Shedding light on biogas: Phototrophic biofilms in anaerobic digesters hold potential for improved biogas production
    Christian Abendroth, Adriel Latorre-Pérez, Manuel Porcar, Claudia Simeonov, Olaf Luschnig, Cristina Vilanova, Javier Pascual
    Systematic and Applied Microbiology.2020; 43(1): 126024.     CrossRef
  • Saliniradius amylolyticus gen. nov., sp. nov., isolated from solar saltern sediment
    Heeyoung Kang, Inseong Cha, Haneul Kim, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(1): 267.     CrossRef
  • Pseudomonas lalkuanensis sp. nov., isolated from a bacterial consortia of contaminated soil enriched for the remediation of e-waste
    Vipool Thorat, Kiran Kirdat, Bhavesh Tiwarekar, Elaine DaCosta, Prasenjit Debbarma, Yogesh Shouche, Shivaji Sathe, Reeta Goel, Tushar Lodha, Amit Yadav
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(12): 6468.     CrossRef
  • Denitrobaculum tricleocarpae gen. nov., sp. nov., a marine bacterium from coralline algae Tricleocarpa sp
    Guanghua Wang, Dahao Tang, Guangyu Li, Shuailiang Xu, Ge Dang, Hongfei Su, Zhiheng Liao, Biao Chen, Wen Huang, Jiayuan Liang, Kefu Yu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(5): 3335.     CrossRef
  • Roseovarius gahaiensis sp. nov., isolated from Gahai Saline Lake, PR China
    Xia Sun, Fang Wang, Yang Liu, Ying Lu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5330.     CrossRef
  • Bacillus yapensis sp. nov., a novel piezotolerant bacterium isolated from deep-sea sediment of the Yap Trench, Pacific Ocean
    Xiashutong Xu, Libo Yu, Guangxin Xu, Qilin Wang, Shiping Wei, Xixiang Tang
    Antonie van Leeuwenhoek.2020; 113(3): 389.     CrossRef
  • Description of Luteithermobacter gelatinilyticus gen. nov., sp. nov., and Paremcibacter congregatus gen. nov., comb. nov. via reclassification of the genus Emcibacter
    Mi-Jeong Park, Teddy Namirimu, Sung-Hyun Yang, Kae Kyoung Kwon
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(8): 4691.     CrossRef
  • Genetic Organization of the aprX-lipA2 Operon Affects the Proteolytic Potential of Pseudomonas Species in Milk
    Christopher Maier, Christopher Huptas, Mario von Neubeck, Siegfried Scherer, Mareike Wenning, Genia Lücking
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Nonomuraea nitratireducens sp. nov., a new actinobacterium isolated from Suaeda australis Moq. rhizosphere
    Yixin Ou, Yong Sheng, Xiaojing Hu, Dongjin Leng, Jiafu Huang, Zhiyu Hu, Linquan Bai, Zixin Deng, Qianjin Kang, Yingying Wu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(9): 5026.     CrossRef
  • Muricauda oceani sp. nov., isolated from the East Pacific Ocean
    Bingxia Dong, Sidong Zhu, Ting Chen, Na Ren, Xiunuan Chen, Yong Chen, Zehao Xue, Xudong Shen, Yizhe Huang, Jifang Yang, Jigang Chen
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(6): 3839.     CrossRef
  • Sphingobium fluviale sp. nov., isolated from a river
    Shih-Yi Sheu, Ya-Ping Guo, Soon-Wo Kwon, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(2): 827.     CrossRef
  • Characterization of Staphylococcus intermedius Group Isolates Associated with Animals from Antarctica and Emended Description of Staphylococcus delphini
    Veronika Vrbovská, Ivo Sedláček, Michal Zeman, Pavel Švec, Vojtěch Kovařovic, Ondrej Šedo, Monika Laichmanová, Jiří Doškař, Roman Pantůček
    Microorganisms.2020; 8(2): 204.     CrossRef
  • Variovorax beijingensis sp. nov., a novel plant-associated bacterial species with plant growth-promoting potential isolated from different geographic regions of Beijing, China
    Jun-lian Gao, Yu-chen Sun, Jing Xue, Pengbo Sun, Hui Yan, Mohammad Sayyar Khan, Li-wei Wang, Xiuhai Zhang, Jian-guang Sun
    Systematic and Applied Microbiology.2020; 43(6): 126135.     CrossRef
  • Aliikangiella coralliicola sp. nov., a bacterium isolated from coral Porites lutea, and proposal of Pleioneaceae fam. nov. to accommodate Pleionea and Aliikangiella
    Guanghua Wang, Ge Dang, Shuailiang Xu, Jianfeng Liu, Hongfei Su, Jiayuan Liang, Wen Huang, Yinghui Wang, Kefu Yu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(11): 5880.     CrossRef
  • Jeotgalibaca ciconiae sp. nov., isolated from the faeces of an Oriental stork
    So-Yeon Lee, Woorim Kang, Pil Soo Kim, Hyun Sik Kim, Hojun Sung, Na-Ri Shin, Ji-Hyun Yun, Jae-Yun Lee, June-Young Lee, Mi-Ja Jung, Yun-Seok Jeong, Euon Jung Tak, Jeong Eun Han, Dong-Wook Hyun, Myung-Suk Kang, Ki-Eun Lee, Byoung-Hee Lee, Jin-Woo Bae
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(5): 3247.     CrossRef
  • Aquabacterium lacunae sp. nov., isolated from a freshwater pond
    Wen-Ming Chen, Tzu-Ying Chen, Soon-Wo Kwon, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(4): 2888.     CrossRef
  • Zoogloea dura sp. nov., a N2-fixing bacterium isolated from forest soil and emendation of the genus Zoogloea and the species Zoogloea oryzae and Zoogloea ramigera
    Ram Hari Dahal, Dhiraj Kumar Chaudhary, Dong-Uk Kim, Jaisoo Kim
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5312.     CrossRef
  • Roseimaritima sediminicola sp. nov., a new member of Planctomycetaceae isolated from Chilika lagoon
    Dhanesh Kumar, Kumar Gaurav, Jagadeeshwari U, Deepshikha G, Sasikala Ch., Ramana Ch.V.
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(4): 2616.     CrossRef
  • Lactobacillus jinshani sp. nov., isolated from solid-state vinegar culture of Zhenjiang aromatic vinegar
    Yongjian Yu, Xin Li, Junhong Zhang, Li-Juan Chai, Zhen-Ming Lu, Zheng-Hong Xu
    Antonie van Leeuwenhoek.2020; 113(1): 43.     CrossRef
  • Aquirufa rosea sp. nov., isolated from a freshwater lake
    Shih-Yi Sheu, Tzu-Ying Chen, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(5): 3145.     CrossRef
  • Staphylococcus borealis sp. nov., isolated from human skin and blood
    Maria Pain, Runa Wolden, Daniel Jaén-Luchoro, Francisco Salvà-Serra, Beatriz Piñeiro Iglesias, Roger Karlsson, Claus Klingenberg, Jorunn Pauline Cavanagh
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(12): 6067.     CrossRef
  • Exploring the Diversity Within the Genus Francisella – An Integrated Pan-Genome and Genome-Mining Approach
    Rajender Kumar, Jeanette E. Bröms, Anders Sjöstedt
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Mesonia oceanica sp. nov., isolated from oceans during the Tara oceans expedition, with a preference for mesopelagic waters
    Teresa Lucena, Isabel Sanz-Sáez, David R. Arahal, Silvia G. Acinas, Olga Sánchez, Carlos Pedrós-Alió, Rosa Aznar, María J. Pujalte
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4329.     CrossRef
  • Jiella pacifica sp. nov., isolated from the West Pacific Ocean
    Zehao Xue, Sidong Zhu, Xiunuan Chen, Ting Chen, Na Ren, Yong Chen, Bingxia Dong, Xudong Shen, Yizhe Huang, Jifang Yang, Jigang Chen
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(7): 4345.     CrossRef
  • Sphingomonas lacunae sp. nov., isolated from a freshwater pond
    Shih-Yi Sheu, Che-Chia Yang, Der-Shyan Sheu, Jyh-Ming Tsai, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(11): 5899.     CrossRef
  • Bradymonabacteria, a novel bacterial predator group with versatile survival strategies in saline environments
    Da-Shuai Mu, Shuo Wang, Qi-Yun Liang, Zhao-Zhong Du, Renmao Tian, Yang Ouyang, Xin-Peng Wang, Aifen Zhou, Ya Gong, Guan-Jun Chen, Joy Van Nostrand, Yunfeng Yang, Jizhong Zhou, Zong-Jun Du
    Microbiome.2020;[Epub]     CrossRef
  • Gemmobacter aquarius sp. nov., Runella rosea sp. nov. and Flavobacterium fluviale sp. nov., isolated from the Namhangang River system
    Min-gyung Baek, Su-Kyoung Shin, Hana Yi
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(11): 5640.     CrossRef
  • Sphingobacterium endophyticum sp. nov., a novel endophyte isolated from halophyte
    Yang-Yang Liu, Fang Liu, Yu-Qian Li, Rui-Feng Lei, Qin Ma, Manik Prabhu Narsing Rao, Dilireba Abudourousuli, Zulihumaer Rouzi, Muyesaier Aosiman, Deng-Di An, Wen-Jun Li
    Archives of Microbiology.2020; 202(10): 2771.     CrossRef
  • Sphingomonas montanisoli sp. nov., isolated from mountain soil
    Zixiao Xu, Yuxiao Zhang, Yasir Muhammad, Gejiao Wang
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(6): 3606.     CrossRef
  • Out of the Abyss: Genome and Metagenome Mining Reveals Unexpected Environmental Distribution of Abyssomicins
    Alba Iglesias, Adriel Latorre-Pérez, James E. M. Stach, Manuel Porcar, Javier Pascual
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Pseudomonas xionganensis sp. nov., isolated from Baiyangdian Lake in Xiong'an New Area
    Yingying Zhao, Yunzhen Yang, Fei He, Chao Wang, Jie Feng, Xiumin Zhang
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(12): 6052.     CrossRef
  • Massilia aquatica sp. nov., Isolated from a Subtropical Stream in China
    Hui-Bin Lu, Tong-Chu Deng, Mei-Ying Xu
    Current Microbiology.2020; 77(10): 3185.     CrossRef
  • Duganella rivus sp. nov., Duganella fentianensis sp. nov., Duganella qianjiadongensis sp. nov. and Massilia guangdongensis sp. nov., isolated from subtropical streams in China and reclassification of all species within genus Pseudoduganella
    Hui-Bin Lu, Zhi-Peng Cai, Yong-Gang Yang, Mei-Ying Xu
    Antonie van Leeuwenhoek.2020; 113(8): 1155.     CrossRef
  • Poritiphilus flavus gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from coral Porites lutea
    Guanghua Wang, Shuailiang Xu, Ge Dang, Jianfeng Liu, Hongfei Su, Biao Chen, Zhiheng Liao, Wen Huang, Jiayuan Liang, Yinghui Wang, Kefu Yu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(11): 5620.     CrossRef
  • Sphingomonas edaphi sp. nov., a novel species isolated from beach soil in the Republic of Korea
    Hyungdong Kim, Geeta Chhetri, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(1): 522.     CrossRef
  • Thalassocella blandensis gen. nov., sp. nov., a novel member of the family Cellvibrionaceae
    Teresa Lucena, David R. Arahal, Isabel Sanz-Sáez, Silvia G. Acinas, Olga Sánchez, Rosa Aznar, Carlos Pedrós-Alió, María J. Pujalte
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(2): 1231.     CrossRef
  • Hymenobacter terrestris sp. nov. and Hymenobacter lapidiphilus sp. nov., isolated from regoliths in Antarctica
    Ivo Sedláček, Roman Pantůček, Michal Zeman, Pavla Holochová, Ondrej Šedo, Eva Staňková, Pavel Švec, Stanislava Králová, Petra Vídeňská, Lenka Micenková, Urvashi, Suresh Korpole, Rup Lal
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(12): 6364.     CrossRef
  • Reclassification of genus Izhakiella into the family Erwiniaceae based on phylogenetic and genomic analyses
    Lingmin Jiang, Dexin Wang, Ji-Sun Kim, Ju Huck Lee, Dae-Hyuk Kim, Suk Weon Kim, Jiyoung Lee
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(5): 3541.     CrossRef
  • Orrella amnicola sp. nov., isolated from a freshwater river, reclassification of Algicoccus marinus as Orrella marina comb. nov., and emended description of the genus Orrella
    Shih-Yi Sheu, Li-Chu Chen, Che-Chia Yang, Aurelien Carlier, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(12): 6381.     CrossRef
  • Allorhizobium terrae sp. nov., isolated from paddy soil, and reclassification of Rhizobium oryziradicis (Zhao et al. 2017) as Allorhizobium oryziradicis comb. nov.
    Shih-Yao Lin, Asif Hameed, Hsin-I Huang, Chiu-Chung Young
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(1): 397.     CrossRef
  • Antrihabitans stalactiti gen. nov., sp. nov., a new member of the family Nocardiaceae isolated from a cave
    Soon Dong Lee, In Seop Kim, Susanne Verbarg, Yochan Joung
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5503.     CrossRef
  • Methylobacterium terricola sp. nov., a gamma radiation-resistant bacterium isolated from gamma ray-irradiated soil
    Jiyoun Kim, Geeta Chhetri, Inhyup Kim, Byungjo Lee, Wonhee Jang, Myung Kyum Kim, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(4): 2449.     CrossRef
  • Pseudomonas leptonychotis sp. nov., isolated from Weddell seals in Antarctica
    Dana Nováková, Pavel Švec, Michal Zeman, Hans-Jürgen Busse, Ivana Mašlaňová, Roman Pantůček, Stanislava Králová, Lucie Krištofová, Ivo Sedláček
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(1): 302.     CrossRef
  • Tichowtungia aerotolerans gen. nov., sp. nov., a novel representative of the phylum Kiritimatiellaeota and proposal of Tichowtungiaceae fam. nov., Tichowtungiales ord. nov. and Tichowtungiia class. nov.
    Da-Shuai Mu, Liu-Yan Zhou, Qi-Yun Liang, Guan-Jun Chen, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(9): 5001.     CrossRef
  • Alcanivorax sediminis sp. nov., isolated from deep-sea sediment of the Pacific Ocean
    Xianzhi Liao, Qiliang Lai, Junpeng Yang, Chunming Dong, Dengfeng Li, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4280.     CrossRef
  • Oleiharenicola lentus sp. nov., isolated from irrigation water
    Wen-Ming Chen, Tzu-Ying Chen, Che-Chia Yang, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(5): 3440.     CrossRef
  • Aestuariirhabdus litorea gen. nov., sp. nov., isolated from a sea tidal flat and proposal of Aestuariirhabdaceae fam. nov.
    Shehzad Abid Khan, Hye Su Jung, Hyung Min Kim, Jeill Oh, Sang-Suk Lee, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(4): 2239.     CrossRef
  • Larkinella punicea sp. nov., isolated from manganese mine soil
    Zijie Zhou, Lin Zhu, Yixuan Dong, Xian Xia, Shijuan Wu, Gejiao Wang
    Archives of Microbiology.2020; 202(9): 2517.     CrossRef
  • Persicimonas caeni gen. nov., sp. nov., the Representative of a Novel Wide-Ranging Predatory Taxon in Bradymonadales
    Shuo Wang, Dashuai Mu, Zong-Jun Du
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Distribution and conservation of known secondary metabolite biosynthesis gene clusters in the genomes of geographically diverse Microcystis aeruginosa strains
    Leanne A. Pearson, Nicholas D. Crosbie, Brett A. Neilan
    Marine and Freshwater Research.2020; 71(5): 701.     CrossRef
  • Terricaulis silvestris gen. nov., sp. nov., a novel prosthecate, budding member of the family Caulobacteraceae isolated from forest soil
    Selma Vieira, Javier Pascual, Christian Boedeker, Alicia Geppert, Thomas Riedel, Manfred Rohde, Jörg Overmann
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(9): 4966.     CrossRef
  • Description of Azotobacter chroococcum subsp. isscasi subsp. nov. isolated from paddy soil and establishment of Azotobacter chroococcum subsp. chroococcum subsp. nov.
    Haiyang Jin, Hui Wang, Yanhui Zhang, Tianlong Hu, Zhibin Lin, Benjuan Liu, Jing Ma, Xiaojie Wang, Qi Liu, Xingwu Lin, Zubin Xie
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(3): 2124.     CrossRef
  • Gracilibacillus oryzae sp. nov., isolated from rice seeds
    Shan-Wen He, Xing Wang, He-Bao Guo, Ji-Gang Han, Kyu Kyu Thin, Ju-sheng Gao, Li-An Ma, Xiao-Xia Zhang
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5467.     CrossRef
  • Senegalimassilia faecalis sp. nov., an anaerobic actinobacterium isolated from human faeces, and emended description of the genus Senegalimassilia
    Kook-Il Han, Ji-Sun Kim, Keun Chul Lee, Mi Kyung Eom, Min Kuk Suh, Han Sol Kim, Seung-Hwan Park, Ju Huck Lee, Se Won Kang, Jam-Eon Park, Byeong Seob Oh, Seung Yeob Yu, Seung-Hyeon Choi, Dong Ho Lee, Hyuk Yoon, Byung-Yong Kim, Je Hee Lee, Jung-Sook Lee
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(3): 1684.     CrossRef
  • Limnobacter alexandrii sp. nov., a thiosulfate-oxidizing, heterotrophic and EPS-bearing Burkholderiaceae isolated from cultivable phycosphere microbiota of toxic Alexandrium catenella LZT09
    Yuhan Duan, Zhiwei Jiang, Zheng Wu, Zhi Sheng, Xi Yang, Jingya Sun, Xiaoling Zhang, Qiao Yang, Xinwei Yu, Jianbo Yan
    Antonie van Leeuwenhoek.2020; 113(11): 1689.     CrossRef
  • Alteromonas profundi sp. nov., isolated from the Indian Ocean
    Xudong Shen, Sidong Zhu, Bingxia Dong, Yong Chen, Zehao Xue, Na Ren, Ting Chen, Xiunuan Chen, Jifang Yang, Jigang Chen
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(8): 4531.     CrossRef
  • Wenzhouxiangella limi sp. nov., isolated from a salt lake
    Xiao-Yu Zhang, Rui Zhang, Jia-Cheng Wang, Ting Zhang, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(8): 4610.     CrossRef
  • Hymenobacter ginkgonis sp. nov., isolated from bark of Ginkgo biloba
    Inseong Cha, Heeyoung Kang, Haneul Kim, Seokhyeon Bae, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(8): 4760.     CrossRef
  • Maribacter luteus sp. nov., a marine bacterium isolated from intertidal sand of the Yellow Sea
    Ang Liu, Yan-Jiao Zhang, De-Kun Liu, Xiu-Zhen Li
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(5): 3497.     CrossRef
  • Cryobacterium soli sp. nov., isolated from forest soil
    Chunjie Gong, Qiliang Lai, Hanfeng Cai, Yanming Jiang, Hu Liao, Yunfei Liu, Dongsheng Xue
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(1): 675.     CrossRef
  • Flavobacterium supellecticarium sp. nov., isolated from an abandoned construction timber
    Shih-Yao Lin, Wen-Ming Chen, Guan-Hua Huang, Asif Hameed, Chun-Tse Chang, Chia-Fang Tsai, Chiu-Chung Young
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(6): 3731.     CrossRef
  • Rubrivivax albus sp. nov., isolated from a freshwater pond
    Shih-Yi Sheu, Zhi-Hao Li, Chiu-Chung Young, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(2): 805.     CrossRef
  • Tabrizicola oligotrophica sp. nov. and Rhodobacter tardus sp. nov., two new species of bacteria belonging to the family Rhodobacteraceae
    Ceshing Sheu, Zhi-Hao Li, Shih-Yi Sheu, Che-Chia Yang, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(12): 6266.     CrossRef
  • Spirosoma telluris sp. nov. and Spirosoma arboris sp. nov. isolated from soil and tree bark, respectively
    Heeyoung Kang, Inseong Cha, Haneul Kim, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5355.     CrossRef
  • Devosia indica sp. nov., isolated from surface seawater in the Indian Ocean
    Danqiu Lin, Yizhe Huang, Yong Chen, Sidong Zhu, Jifang Yang, Jigang Chen
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(1): 340.     CrossRef
  • Brevilactibacter flavus gen. nov., sp. nov., a novel bacterium of the family Propionibacteriaceae isolated from raw milk and dairy products and reclassification of Propioniciclava sinopodophylli as Brevilactibacter sinopodophylli comb. nov.
    Mareike Wenning, Franziska Breitenwieser, Christopher Huptas, Etienne Doll, Benedikt Bächler, Annika Schulz, Andreas Dunkel, Thomas Hofmann, Mario von Neubeck, Hans-Jürgen Busse, Siegfried Scherer
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(4): 2186.     CrossRef
  • Ideonella livida sp. nov., isolated from a freshwater lake
    Wen-Ming Chen, Li-Chu Chen, Der-Shyan Sheu, Jyh-Ming Tsai, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(9): 4942.     CrossRef
  • Jejubacter calystegiae gen. nov., sp. nov., moderately halophilic, a new member of the family Enterobacteriaceae, isolated from beach morning glory
    Lingmin Jiang, Dexin Wang, Jung-Sook Lee, Dae-Hyuk Kim, Jae Cheol Jeong, Cha Young Kim, Suk Weon Kim, Jiyoung Lee
    Journal of Microbiology.2020; 58(5): 357.     CrossRef
  • Hymenobacter setariae sp. nov., isolated from the ubiquitous weedy grass Setaria viridis
    Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Hyungdong Kim, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(6): 3724.     CrossRef
  • Geomonas soli gen. nov., sp. nov., a New Member of the Family Comamonadaceae, Isolated from Soil
    Shehzad Abid Khan, Sang Eun Jeong, Hye Yoon Park, Sang-Suk Lee, Che Ok Jeon
    Current Microbiology.2020; 77(2): 286.     CrossRef
  • Arenibacter lacus sp. nov., Isolated from Chilika Lagoon, India
    Dhanesh Kumar, Nandardhane Smita, Gaurav Kumar, Gandham Suresh, Uppada Jagadeeshwari, Chintalapati Sasikala, Chintalapati Venkata Ramana
    Current Microbiology.2020; 77(12): 4152.     CrossRef
  • Adhaeribacter arboris sp. nov., and Adhaeribacter pallidiroseus sp. nov., novel bacteria isolated from birch tree (Betula platyphylla)
    Heeyoung Kang, Haneul Kim, Inseong Cha, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(12): 6195.     CrossRef
  • Sphingobium algorifonticola sp. nov., isolated from a cold spring
    Wen-Ming Chen, Ya-Ping Guo, Ceshing Sheu, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(1): 309.     CrossRef
  • Distribution of Phototrophic Purple Nonsulfur Bacteria in Massive Blooms in Coastal and Wastewater Ditch Environments
    Akira Hiraishi, Nobuyoshi Nagao, Chinatsu Yonekawa, So Umekage, Yo Kikuchi, Toshihiko Eki, Yuu Hirose
    Microorganisms.2020; 8(2): 150.     CrossRef
  • Rhodovarius crocodyli sp. nov., isolated from a crocodile pond
    Wen-Ming Chen, Yi-Ru Xie, Der-Shyan Sheu, Jyh-Ming Tsai, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(9): 5141.     CrossRef
  • Description of Azoarcus nasutitermitis sp. nov. and Azoarcus rhizosphaerae sp. nov., two nitrogen-fixing species isolated from termite nest and rhizosphere of Ficus religiosa
    Shih-Yao Lin, Asif Hameed, Chia-Fang Tsai, Guan-Hua Huang, Yi-Han Hsu, Chiu-Chung Young
    Antonie van Leeuwenhoek.2020; 113(7): 933.     CrossRef
  • Cohnella fermenti sp. nov., isolated from a fermentation process
    Shih-Yao Lin, Wen-Ming Chen, Asif Hameed, Guan-Hua Huang, Mei-Hua Hung, Chiu-Chung Young
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(4): 2602.     CrossRef
  • Gimesia chilikensis sp. nov., a haloalkali-tolerant planctomycete isolated from Chilika lagoon and emended description of the genus Gimesia
    Dhanesh Kumar, Kumar Gaurav, Sreya PK, Shabbir A., Jagadeeshwari Uppada, Sasikala Ch., Ramana Ch.V.
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(6): 3647.     CrossRef
  • Salinibius halmophilus gen. nov., sp. nov., isolated from a marine solar saltern
    Si-Kai Ling, Hui Zhang, Nan-Nan Wang, Guan-Jun Chen, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(2): 1079.     CrossRef
  • Metagenomic profiling of ammonia- and methane-oxidizing microorganisms in two sequential rapid sand filters
    Lianna Poghosyan, Hanna Koch, Jeroen Frank, Maartje A.H.J. van Kessel, Geert Cremers, Theo van Alen, Mike S.M. Jetten, Huub J.M. Op den Camp, Sebastian Lücker
    Water Research.2020; 185: 116288.     CrossRef
  • “ Candidatus Desulfobulbus rimicarensis,” an Uncultivated Deltaproteobacterial Epibiont from the Deep-Sea Hydrothermal Vent Shrimp Rimicaris exoculata
    Lijing Jiang, Xuewen Liu, Chunming Dong, Zhaobin Huang, Marie-Anne Cambon-Bonavita, Karine Alain, Li Gu, Shasha Wang, Zongze Shao, Shuang-Jiang Liu
    Applied and Environmental Microbiology.2020;[Epub]     CrossRef
  • Nocardioides convexus sp. nov. and Nocardioides anomalus sp. nov., isolated from soil and mineral water
    Yuna Park, Qingzhen Liu, Soohyun Maeng, Won Jung Choi, Yoonjee Chang, Wan-Taek Im
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(12): 6402.     CrossRef
  • Mesorhizobium alexandrii sp. nov., isolated from phycosphere microbiota of PSTs-producing marine dinoflagellate Alexandrium minutum amtk4
    Xi Yang, Zhiwei Jiang, Jing Zhang, Xin Zhou, Xiaoling Zhang, Lei Wang, Ting Yu, Zhilin Wang, Jinlong Bei, Bo Dong, Zhangyan Dai, Qiao Yang, Zhuang Chen
    Antonie van Leeuwenhoek.2020; 113(7): 907.     CrossRef
  • Description of Massilia rubra sp. nov., Massilia aquatica sp. nov., Massilia mucilaginosa sp. nov., Massilia frigida sp. nov., and one Massilia genomospecies isolated from Antarctic streams, lakes and regoliths
    Pavla Holochová, Ivana Mašlaňová, Ivo Sedláček, Pavel Švec, Stanislava Králová, Vojtěch Kovařovic, Hans-Jürgen Busse, Eva Staňková, Miloš Barták, Roman Pantůček
    Systematic and Applied Microbiology.2020; 43(5): 126112.     CrossRef
  • Paradesulfovibrio onnuriensis gen. nov., sp. nov., a chemolithoautotrophic sulfate-reducing bacterium isolated from the Onnuri vent field of the Indian Ocean and reclassification of Desulfovibrio senegalensis as Paradesulfovibrio senegalensis comb. nov.
    Yun Jae Kim, Jhung-Ahn Yang, Jae Kyu Lim, Mi-Jeong Park, Sung-Hyun Yang, Hyun Sook Lee, Sung Gyun Kang, Jung-Hyun Lee, Kae Kyoung Kwon
    Journal of Microbiology.2020; 58(4): 252.     CrossRef
  • Litorilituus lipolyticus sp. nov., isolated from intertidal sand of the Yellow Sea in China, and emended description of Colwellia asteriadis
    Ang Liu, Yan-Jiao Zhang, Qing-Jie Xue, Hui Wang, Yuan-Yuan Yang, Feng Du, Long-Yu Zhao, Hong-Hua Zhang, Yun-Qing Li, Xiu-Zhen Li
    Antonie van Leeuwenhoek.2020; 113(4): 449.     CrossRef
  • Wocania indica gen. nov., sp. nov., isolated from deep sea hydrothermal sulfide in the northwest Indian Ocean, and proposal to reclassify Flaviramulus ichthyoenteri as Wocania ichthyoenteri comb. nov.
    Yang He, Xiang Zeng, Jinbo Xiong, Qiliang Lai, Jianyang Li, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(10): 5488.     CrossRef
  • Whole genome analysis calls for a taxonomic rearrangement of the genus Colwellia
    Ang Liu, Yan-Jiao Zhang, Peng Cheng, Ya-Jie Peng, Jochen Blom, Qing-Jie Xue
    Antonie van Leeuwenhoek.2020; 113(7): 919.     CrossRef
  • Leeia aquatica sp. nov., isolated from freshwater
    Jaeho Song, Yochan Joung, Shan-Hui Li, Juchan Hwang, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(11): 5848.     CrossRef
  • Aurantiacibacter rhizosphaerae sp. nov., isolated from a rhizosphere mudflat of a halophyte and proposal to reclassify Erythrobacter suaedae Lee et al. 2019. and Erythrobacter flavus Yoon et al. 2003 as Aurantiacibacter suaedae comb. nov. and
    Soon Dong Lee, In Seop Kim
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(12): 6257.     CrossRef
  • Hydrogen and Carbon Monoxide-Utilizing Kyrpidia spormannii Species From Pantelleria Island, Italy
    Carmen Hogendoorn, Arjan Pol, Nunzia Picone, Geert Cremers, Theo A. van Alen, Antonina L. Gagliano, Mike S. M. Jetten, Walter D’Alessandro, Paola Quatrini, Huub J. M. Op den Camp
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Fundicoccus ignavus gen. nov., sp. nov., a novel genus of the family Aerococcaceae isolated from bulk tank milk
    Annemarie Siebert, Christopher Huptas, Mareike Wenning, Siegfried Scherer, Etienne V. Doll
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(8): 4774.     CrossRef
  • Flammeovirga pectinis sp. nov., isolated from the gut of the Korean scallop, Patinopecten yessoensis
    Yun-Seok Jeong, Woorim Kang, Hojun Sung, June-Young Lee, Ji-Hyun Yun, Na-Ri Shin, Hyun Sik Kim, So-Yeon Lee, Jeong Eun Han, Jae-Yun Lee, Euon Jung Tak, Pil Soo Kim, Dong-Wook Hyun, Mi-Ja Jung, Tae Woong Whon, Myung-Suk Kang, Ki-Eun Lee, Byoung-Hee Lee, Ji
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(1): 499.     CrossRef
  • High counts of thermophilic spore formers in dairy powders originate from persisting strains in processing lines
    Anna Dettling, Carolin Wedel, Christopher Huptas, Jörg Hinrichs, Siegfried Scherer, Mareike Wenning
    International Journal of Food Microbiology.2020; 335: 108888.     CrossRef
  • Paenibacillus lycopersici sp. nov. and Paenibacillus rhizovicinus sp. nov., isolated from the rhizosphere of tomato (Solanum lycopersicum)
    Shin Ae Lee, Tae-Wan Kim, Jun Heo, Mee-Kyung Sang, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
    Journal of Microbiology.2020; 58(10): 832.     CrossRef
  • Cerasibacillus terrae sp. nov., isolated from maize field, and emended description of Cerasibacillus quisquiliarum Nakamura et al. 2004
    Shih-Yao Lin, Chia-Fang Tsai, Asif Hameed, Chiu-Chung Young
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(11): 5725.     CrossRef
  • Microbial community composition and functional potential in Bothnian Sea sediments is linked to Fe and S dynamics and the quality of organic matter
    Olivia Rasigraf, Niels A. G. M. van Helmond, Jeroen Frank, Wytze K. Lenstra, Matthias Egger, Caroline P. Slomp, Mike S. M. Jetten
    Limnology and Oceanography.2020;[Epub]     CrossRef
  • Metagenomic Association Analysis of Gut Symbiont Limosilactobacillus reuteri Without Host-Specific Genome Isolation
    Sein Park, Martin Steinegger, Ho-Seong Cho, Jongsik Chun
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Methylobacterium symbioticum sp. nov., a new species isolated from spores of Glomus iranicum var. tenuihypharum
    Jose Antonio Pascual, Margarita Ros, Jesus Martínez, Francisco Carmona, Antonio Bernabé, Rocío Torres, Teresa Lucena, Rosa Aznar, David R. Arahal, Felix Fernández
    Current Microbiology.2020; 77(9): 2031.     CrossRef
  • Sphingomonas solaris sp. nov., isolated from a solar panel in Boston, Massachusetts
    Kristie Tanner, Christopher P. Mancuso, Juli Peretó, Ahmad S. Khalil, Cristina Vilanova, Javier Pascual
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(3): 1814.     CrossRef
  • Adhaeribacter rhizoryzae sp. nov., a fibrillar matrix-producing bacterium isolated from the rhizosphere of rice plant
    Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Byungjo Lee, Wonhee Jang, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5382.     CrossRef
  • Genomic Comparison of Insect Gut Symbionts from Divergent Burkholderia Subclades
    Kazutaka Takeshita, Yoshitomo Kikuchi
    Genes.2020; 11(7): 744.     CrossRef
  • Duganella albus sp. nov., Duganella aquatilis sp. nov., Duganella pernnla sp. nov. and Duganella levis sp. nov., isolated from subtropical streams in China
    Huibin Lu, Tongchu Deng, Feifei Liu, Yonghong Wang, Xunan Yang, Meiying Xu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(6): 3801.     CrossRef
  • Description of Maribellus sediminis sp. nov., a marine nitrogen-fixing bacterium isolated from sediment of cordgrass and mangrove
    Zhaobin Huang, Yuzhong Hu, Qiliang Lai, Yu Guo
    Systematic and Applied Microbiology.2020; 43(4): 126099.     CrossRef
  • Ningiella ruwaisensis gen. nov., sp. nov., a member of the family Alteromonadaceae isolated from marine water of the Arabian Gulf
    Rashmi Fotedar, Matthew E. Caldwell, Krithivasan Sankaranarayanan, Aisha Al -Zeyara, Ameena Al-Malki, Ridhima Kaul, Masoud Al Marri, Hamad S. Al -Shamari, Paul A. Lawson
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4130.     CrossRef
  • Maribacter algicola sp. nov., isolated from a marine red alga, Porphyridium marinum, and transfer of Maripseudobacter aurantiacus Chen et al. 2017 to the genus Maribacter as Maribacter aurantiacus comb. nov.
    Shehzad Abid Khan, Sang Eun Jeong, Ju Hye Baek, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(2): 797.     CrossRef
  • In silico functional and evolutionary analyses of rubber oxygenases (RoxA and RoxB)
    Vikas Sharma, Fauzul Mobeen, Tulika Prakash
    3 Biotech.2020;[Epub]     CrossRef
  • Improved Metagenomic Taxonomic Profiling Using a Curated Core Gene-Based Bacterial Database Reveals Unrecognized Species in the Genus Streptococcus
    Mauricio Chalita, Sung-min Ha, Yeong Ouk Kim, Hyun-Seok Oh, Seok-Hwan Yoon, Jongsik Chun
    Pathogens.2020; 9(3): 204.     CrossRef
  • Klebsiella indica sp. nov., isolated from the surface of a tomato
    Sukriti Gujarati, Diptaraj Chaudhari, Ashwini Hagir, Mitesh Khairnar, Yogesh Shouche, Praveen Rahi
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(5): 3278.     CrossRef
  • Cupriavidus agavae sp. nov., a species isolated from Agave L. rhizosphere in northeast Mexico
    Ivan Arroyo-Herrera, Jessica Maldonado-Hernández, Fernando-Uriel Rojas-Rojas, Georgina Meza-Radilla, Violeta Larios-Serrato, María-Soledad Vásquez-Murrieta, William B. Whitman, Paulina Estrada-de los Santos
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4165.     CrossRef
  • Filimonas effusa sp. nov., isolated from a freshwater river
    Wen-Ming Chen, Tzu-Ying Chen, Zhi-Hao Li, Soon-Wo Kwon, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(3): 1508.     CrossRef
  • Duganella lactea sp. nov., Duganella guangzhouensis sp. nov., Duganella flavida sp. nov. and Massilia rivuli sp. nov., isolated from a subtropical stream in PR China and proposal to reclassify Duganella ginsengisoli as Massilia ginsengisoli c
    Huibin Lu, Tongchu Deng, Feifei Liu, Yonghong Wang, Xunan Yang, Meiying Xu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(8): 4822.     CrossRef
  • Genome-based reclassification of Paenibacillus jamilae Aguilera et al. 2001 as a later heterotypic synonym of Paenibacillus polymyxa (Prazmowski 1880) Ash et al. 1994
    Min-Jung Kwak, Seon-Bin Choi, Sung-min Ha, Eun Hye Kim, Byung-Yong Kim, Jongsik Chun
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(5): 3134.     CrossRef
  • Aequoribacter fuscus gen. nov., sp. nov., a new member of the family Halieaceae, isolated from coastal seawater
    Shan-Hui Li, Jaeho Song, Ilnam Kang, Juchan Hwang, Jang-Cheon Cho
    Journal of Microbiology.2020; 58(6): 463.     CrossRef
  • Psychroflexus maritimus sp. nov., isolated from coastal sediment
    Yan-Lin Zhong, Rui Zhang, Xiao-Yu Zhang, Li-Xue Yu, Meng-Fan Zhao, Zong-Jun Du
    Archives of Microbiology.2020; 202(8): 2127.     CrossRef
  • Ketobacter nezhaii sp. nov., a marine bacterium isolated from coastal sediment
    Jianyang Li, Mingming Qi, Qiliang Lai, Xianhua Liu, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(9): 4960.     CrossRef
  • Sphingobacterium chungjuense sp. nov., isolated from a freshwater lake
    Jaeho Song, Yochan Joung, Shan-Hui Li, Juchan Hwang, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(12): 6126.     CrossRef
  • Paracoccus xiamenensis sp. nov., isolated from seawater on the Xiamen
    Lina Lyu, Bin Zhi, Qiliang Lai, Zongze Shao, Zhiqiang Yu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4285.     CrossRef
  • Paludisphaera soli sp. nov., a new member of the family Isosphaeraceae isolated from high altitude soil in the Western Himalaya
    Rishabh Kaushik, Meesha Sharma, Kumar Gaurav, U. Jagadeeshwari, A. Shabbir, Ch. Sasikala, Ch. V. Ramana, Maharaj K. Pandit
    Antonie van Leeuwenhoek.2020; 113(11): 1663.     CrossRef
  • Lacibacter luteus sp. nov., isolated from a freshwater river
    Shih-Yi Sheu, Tzu-Ying Chen, Soon-Wo Kwon, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(2): 1404.     CrossRef
  • Flavobacterium ichthyis sp. nov., isolated from a fish pond
    Wen-Ming Chen, Che-Chia Yang, Ceshing Sheu, Soon-Wo Kwon, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(9): 5075.     CrossRef
  • Mucilaginibacter agri sp. nov. and Mucilaginibacter humi sp. nov., isolated from soil
    Ye Lin Seo, Shehzad Abid Khan, Hyung Min Kim, Byung Hee Chun, Dong Min Han, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(8): 4616.     CrossRef
  • Ferrimonas sediminicola sp. nov. and Ferrimonas aestuarii sp. nov., Fe(III)-reducing bacteria isolated from marine environments
    Juchan Hwang, Jaeho Song, Yeonjung Lim, Yochan Joung, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(9): 4927.     CrossRef
  • Patiriisocius marinistellae gen. nov., sp. nov., isolated from the starfish Patiria pectinifera, and reclassification of Ulvibacter marinus as a member of the genus Patiriisocius comb. nov.
    Keisuke Kawano, Natsumi Ushijima, Minoru Kihara, Hideomi Itoh
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4119.     CrossRef
  • Integration of culture-dependent and independent methods provides a more coherent picture of the pig gut microbiome
    Gavin J Fenske, Sudeep Ghimire, Linto Antony, Jane Christopher-Hennings, Joy Scaria
    FEMS Microbiology Ecology.2020;[Epub]     CrossRef
  • Pseudomonas karstica sp. nov. and Pseudomonas spelaei sp. nov., isolated from calcite moonmilk deposits from caves
    Pavel Švec, Marcel Kosina, Michal Zeman, Pavla Holochová, Stanislava Králová, Eva Němcová, Lenka Micenková, Urvashi, Vipin Gupta, Utkarsh Sood, Rup Lal, Suresh Korpole, Ivo Sedláček
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(9): 5131.     CrossRef
  • Extremophilic nitrite-oxidizing Chloroflexi from Yellowstone hot springs
    Eva Spieck, Michael Spohn, Katja Wendt, Eberhard Bock, Jessup Shively, Jeroen Frank, Daniela Indenbirken, Malik Alawi, Sebastian Lücker, Jennifer Hüpeden
    The ISME Journal.2020; 14(2): 364.     CrossRef
  • Novosphingobium ovatum sp. nov., isolated from a freshwater mesocosm
    Wen-Ming Chen, Cheng-Ye Cai, Der-Shyan Sheu, Jyh-Ming Tsai, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(10): 5243.     CrossRef
  • Sunxiuqinia indica sp. nov., isolated from deep sea
    Jianyang Li, Mingming Qi, Qiliang Lai, Guangyi Wang, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4186.     CrossRef
  • Saccharibacillus brassicae sp. nov., an endophytic bacterium isolated from kimchi cabbage (Brassica rapa subsp. pekinensis) seeds
    Lingmin Jiang, Chan Ju Lim, Song-Gun Kim, Jae Cheol Jeong, Cha Young Kim, Dae-Hyuk Kim, Suk Weon Kim, Jiyoung Lee
    Journal of Microbiology.2020; 58(1): 24.     CrossRef
  • Sphingorhabdus lacus sp. nov. and Sphingorhabdus profundilacus sp. nov., isolated from freshwater environments
    Miri Park, Ilsuk Jung, Jaeho Song, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(5): 3202.     CrossRef
  • Novosphingobium umbonatum sp. nov., isolated from a freshwater mesocosm
    Shih-Yi Sheu, Cheng-Ye Cai, Soon-Wo Kwon, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology.2020; 70(2): 1122.     CrossRef
  • Pseudooceanicola pacificus sp. nov., isolated from deep-sea sediment of the Pacific Ocean
    Lina Lyu, Qiliang Lai, Jianyang Li, Zongze Shao, Zhiqiang Yu
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4372.     CrossRef
  • Halioglobus maricola sp. nov., isolated from coastal seawater
    Shan-Hui Li, Jaeho Song, Yeonjung Lim, Yochan Joung, Ilnam Kang, Jang-Cheon Cho
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(3): 1868.     CrossRef
  • Cryobacterium ruanii sp. nov. and Cryobacterium breve sp. nov., isolated from glaciers
    Qing Liu, Ji-Hui Tian, Hong-Can Liu, Yu-Guang Zhou, Yu-Hua Xin
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(3): 1918.     CrossRef
  • Prokaryotic sigma factors and their transcriptional counterparts in Archaea and Eukarya
    Ana G. Abril, Jose Luis R. Rama, A. Sánchez-Pérez, Tomás G. Villa
    Applied Microbiology and Biotechnology.2020; 104(10): 4289.     CrossRef
  • Nitratireductor alexandrii sp. nov., from phycosphere microbiota of toxic marine dinoflagellate Alexandrium tamarense
    Zhiwei Jiang, Yuhan Duan, Xi Yang, Bing Yao, Teer Zeng, Xiaoyan Wang, Qi Feng, Min Qi, Qiao Yang, Xiaoling Zhang
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4390.     CrossRef
  • Croceicoccus sediminis sp. nov., isolated from coastal sediment
    Zhaobin Huang, Aoqiang Zhang, Qiliang Lai, Jianjun Yuan
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(2): 779.     CrossRef
  • Signs of a phyllospheric lifestyle in the genome of the stress-tolerant strain Azospirillum brasilense Az19
    Julia E. García, Maria M. Labarthe, Luciana A. Pagnussat, Melina Amenta, Cecilia M. Creus, Guillermo A. Maroniche
    Systematic and Applied Microbiology.2020; 43(6): 126130.     CrossRef
  • Genomic, metabolic and phenotypic variability shapes ecological differentiation and intraspecies interactions of Alteromonas macleodii
    Hanna Koch, Nora Germscheid, Heike M. Freese, Beatriz Noriega-Ortega, Dominik Lücking, Martine Berger, Galaxy Qiu, Ezequiel M. Marzinelli, Alexandra H. Campbell, Peter D. Steinberg, Jörg Overmann, Thorsten Dittmar, Meinhard Simon, Matthias Wietz
    Scientific Reports.2020;[Epub]     CrossRef
  • Reinekea thalattae sp. nov., a New Species of the Genus Reinekea Isolated from Surface Seawater in Sehwa Beach
    Inhyup Kim, Geeta Chhetri, Jiyoun Kim, Minchung Kang, Taegun Seo
    Current Microbiology.2020; 77(12): 4174.     CrossRef
  • All ANIs are not created equal: implications for prokaryotic species boundaries and integration of ANIs into polyphasic taxonomy
    Marike Palmer, Emma T. Steenkamp, Jochen Blom, Brian P. Hedlund, Stephanus N. Venter
    International Journal of Systematic and Evolutionary Microbiology .2020; 70(4): 2937.     CrossRef
  • Rhizobium indicum sp. nov., isolated from root nodules of pea (Pisum sativum) cultivated in the Indian trans-Himalayas
    Praveen Rahi, Pranoti Giram, Diptaraj Chaudhari, George C. diCenzo, Shashi Kiran, Aastha Khullar, Mahima Chandel, Sayali Gawari, Anagha Mohan, Shraddha Chavan, Bhagyashree Mahajan
    Systematic and Applied Microbiology.2020; 43(5): 126127.     CrossRef
  • Nonlabens xiamenensis sp. nov., isolated from coastal seawater
    Zhaobin Huang, Yaping Du, Qiliang Lai, Zongze Shao
    Antonie van Leeuwenhoek.2019; 112(8): 1263.     CrossRef
  • Amniculibacterium aquaticum gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from a stream
    Wen-Ming Chen, Ya-Ping Guo, Ceshing Sheu, Shih-Yi Sheu
    Archives of Microbiology.2019; 201(8): 1119.     CrossRef
  • Discovery of a functional, contracted heme-binding motif within a multiheme cytochrome
    Christina Ferousi, Simon Lindhoud, Frauke Baymann, Eric R. Hester, Joachim Reimann, Boran Kartal
    Journal of Biological Chemistry.2019; 294(45): 16953.     CrossRef
  • Flavobacterium piscinae sp. nov., isolated from a fish pond
    Wen-Ming Chen, Ya-Ping Guo, Soon-Wo Kwon, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(6): 1775.     CrossRef
  • Description of Sphingobium psychrophilum sp. nov., a cold-adapted bacterium isolated from Arctic soil
    Ram Hari Dahal, Dhiraj Kumar Chaudhary, Dong-Uk Kim, Jaisoo Kim
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Uncultured Nitrospina-like species are major nitrite oxidizing bacteria in oxygen minimum zones
    Xin Sun, Linnea F M Kop, Maggie C Y Lau, Jeroen Frank, Amal Jayakumar, Sebastian Lücker, Bess B Ward
    The ISME Journal.2019; 13(10): 2391.     CrossRef
  • Sphingomonas crocodyli sp. nov., isolated from a crocodile pond
    Shih-Yi Sheu, Yi-Ru Xie, Soon-Wo Kwon, Ceshing Sheu, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(7): 2153.     CrossRef
  • N-glycan Utilization by Bifidobacterium Gut Symbionts Involves a Specialist β-Mannosidase
    Rosa Lorizolla Cordeiro, Renan Augusto Siqueira Pirolla, Gabriela Felix Persinoti, Fábio Cesar Gozzo, Priscila Oliveira de Giuseppe, Mario Tyago Murakami
    Journal of Molecular Biology.2019; 431(4): 732.     CrossRef
  • Identification of Molecular Markers That Are Specific to the Class Thermoleophilia
    Danyu Hu, Yang Zang, Yingjin Mao, Beile Gao
    Frontiers in Microbiology.2019;[Epub]     CrossRef
  • Neobacillus endophyticus sp. nov., an endophytic bacterium isolated from Selaginella involvens roots
    Lingmin Jiang, Myoung Hui Lee, Jae Cheol Jeong, Dae-Hyuk Kim, Cha Young Kim, Suk Weon Kim, Jiyoung Lee
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Stagnimonas aquatica gen. nov., sp. nov., a new member of the family Nevskiaceae isolated from a freshwater mesocosm
    Shih-Yi Sheu, Tzu-Ying Chen, Chiu-Chung Young, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(6): 1606.     CrossRef
  • Hydrocarboniclastica marina gen. nov., sp. nov., a marine hydrocarbonoclastic bacterium isolated from an in situ enriched hydrocarbon-degrading consortium in sea sediment
    Chunming Dong, Tiantian Ma, Renju Liu, Qiliang Lai, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(8): 2250.     CrossRef
  • Anaerosacchariphilus polymeriproducens gen. nov., sp. nov., an anaerobic bacterium isolated from a salt field
    Wonduck Kim, Sung-Hyun Yang, Mi-Jeong Park, Jihye Oh, Jung-Hyun Lee, Kae Kyoung Kwon
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(7): 1934.     CrossRef
  • Flavobacterium baculatum sp. nov., a carotenoid and flexirubin-type pigment producing species isolated from flooded paddy field
    Geeta Chhetri, Jiyoun Kim, Inhyup Kim, Minchung Kang, Byungjo Lee, Wonhee Jang, Taegun Seo
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Oceaniradius stylonematis gen. nov., sp. nov., isolated from a red alga, Stylonema cornu-cervi
    Sang Eun Jeong, Kyung Hyun Kim, Duckhyun Lhee, Hwan Su Yoon, Zhe-Xue Quan, En-Young Lee, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(7): 1967.     CrossRef
  • Pradoshia eiseniae gen. nov., sp. nov., a spore-forming member of the family Bacillaceae capable of assimilating 3-nitropropionic acid, isolated from the anterior gut of the earthworm Eisenia fetida
    Tilak Saha, Vivek K. Ranjan, Sriradha Ganguli, Subarna Thakur, Biswanath Chakraborty, Partha Barman, Wriddhiman Ghosh, Ranadhir Chakraborty
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(5): 1265.     CrossRef
  • Rhizobium chutanense sp. nov., isolated from root nodules of Phaseolus vulgaris in China
    Yunyun Huo, Wenjun Tong, Juanjuan Wang, Fang Wang, Wenqing Bai, Entao Wang, Peng Shi, Weimin Chen, Gehong Wei
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(7): 2049.     CrossRef
  • Complete nitrification: insights into the ecophysiology of comammox Nitrospira
    Hanna Koch, Maartje A. H. J. van Kessel, Sebastian Lücker
    Applied Microbiology and Biotechnology.2019; 103(1): 177.     CrossRef
  • Paraburkholderia telluris sp. nov., isolated from subtropical forest soil
    Sen-yang Xiao, Zeng-hong Gao, Zi Yang, Jie-yi Bi, Li-hong Qiu
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(5): 1274.     CrossRef
  • Pseudorhodobacter turbinis sp. nov., isolated from the gut of the Korean turban shell, Turbo cornutus
    Yun-Seok Jeong, Woorim Kang, June-Young Lee, Hojun Sung, Hyun Sik Kim, Jeong-Eun Han, Euon Jung Tak, So-Yeon Lee, Jae-Yun Lee, Pil Soo Kim, Dong-Wook Hyun, Mi-Ja Jung, Jin-Woo Bae
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Isolation and genome analysis of Winogradskyella algicola sp. nov., the dominant bacterial species associated with the green alga Dunaliella tertiolecta
    Jaeho Song, Yeonjung Lim, Hye-Jin Jang, Yochan Joung, Ilnam Kang, Seong-Joo Hong, Choul-Gyun Lee, Jang-Cheon Cho
    Journal of Microbiology.2019; 57(11): 982.     CrossRef
  • Jannaschia marina sp. nov., isolated from the gut of a gastropod, Onchidium reevesii
    Si Chen, Mengyuan He, Qiliang Lai, Ying Xu, Chenjing Shang
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Allopseudarcicella aquatilis gen. nov., sp. nov., isolated from freshwater
    Haneul Kim, Heeyoung Kang, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(11): 3574.     CrossRef
  • Paraburkholderia pallida sp. nov. and Paraburkholderia silviterrae sp. nov., isolated from forest soil
    Sen-yang Xiao, Zeng-hong Gao, Qin-hua Lin, Li-hong Qiu
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(12): 3777.     CrossRef
  • Aquincola rivuli sp. nov., isolated from a freshwater stream
    Shih-Yi Sheu, Tsai-Ying Hsieh, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(8): 2226.     CrossRef
  • Flavobacterium amnicola sp. nov., isolated from a sub-tropical stream
    Shih-Yi Sheu, Ya-Ping Guo, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(8): 2283.     CrossRef
  • Shimia thalassica sp. nov., and reclassification of Pseudopelagicola gijangensis as Shimia gijangensis comb. nov., and Thalassobius activus as Cognatishimia activa comb. nov.
    David R. Arahal, Alexandra La Mura, Teresa Lucena, Lidia Rodrigo-Torres, Rosa Aznar, María J. Pujalte
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(11): 3405.     CrossRef
  • Clostridium indicum sp. nov., a novel anaerobic bacterium isolated from the sludge of an industrial effluent
    Krishna Gundawar, Sumeeta Kumari, Shikha Sharma, Vishakha Grover, Prabhu B. Patil, Suresh Korpole
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(3): 672.     CrossRef
  • Peribacillus faecalis sp. nov., a moderately halophilic bacterium isolated from the faeces of a cow
    Lingmin Jiang, Won Yong Jung, Zhun Li, Mi-Kyung Lee, Seung-Hwan Park, Se Won Kang, Jung-Sook Lee, Hyunjung Jung, Tai-Young Hur, Hyeun Bum Kim, Jae-Kyung Kim, Ju-Hoon Lee, Ju Huck Lee, Jiyoung Lee
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Mucilaginibacter aquatilis sp. nov., Mucilaginibacter arboris sp. nov., and Mucilaginibacter ginkgonis sp. nov., novel bacteria isolated from freshwater and tree bark
    Heeyoung Kang, Haneul Kim, Seokhyeon Bae, Kiseong Joh
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Devosia naphthalenivorans sp. nov., isolated from East Pacific Ocean sediment
    Yong Chen, Sidong Zhu, Danqiu Lin, Xing Wang, Jifang Yang, Jigang Chen
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(7): 1974.     CrossRef
  • Parashewanella tropica sp. nov., a mesophilic bacterium isolated from a marine sponge from Chuuk lagoon, Federated States of Micronesia, and emended description of the genus Parashewanella
    Teddy Namirimu, Mi-Jeong Park, Sung-Hyun Yang, Young-Gun Zo, Kae Kyoung Kwon
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(10): 3256.     CrossRef
  • Histidinibacterium lentulum gen. nov., sp. nov., a marine bacterium from the culture broth of marine microalga Picochlorum sp. 122
    Guanghua Wang, Shuailiang Xu, Hongfei Su, Biao Chen, Jiayuan Liang, Wen Huang, Yinghui Wang, Kefu Yu
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(2): 578.     CrossRef
  • Apibacter muscae sp. nov., a novel bacterial species isolated from house flies
    Rahel Park, Maria C. Dzialo, Donat Nsabimana, Bart Lievens, Kevin J. Verstrepen
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(11): 3586.     CrossRef
  • Pseudomonas nitrititolerans sp. nov., a nitrite-tolerant denitrifying bacterium isolated from a nitrification/denitrification bioreactor
    Ji-Sen Peng, Ying Liu, Lei Yan, Ting-Ting Hou, Hong-Can Liu, Yu-Guang Zhou, Zhi-Pei Liu
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(8): 2471.     CrossRef
  • Geomonas oryzae gen. nov., sp. nov., Geomonas edaphica sp. nov., Geomonas ferrireducens sp. nov., Geomonas terrae sp. nov., Four Ferric-Reducing Bacteria Isolated From Paddy Soil, and Reclassification of Three Species of the Genus Geobacter as Members of
    Zhenxing Xu, Yoko Masuda, Hideomi Itoh, Natsumi Ushijima, Yutaka Shiratori, Keishi Senoo
    Frontiers in Microbiology.2019;[Epub]     CrossRef
  • Comparative Genomic and Phylogenomic Analyses Clarify Relationships Within and Between Bacillus cereus and Bacillus thuringiensis: Proposal for the Recognition of Two Bacillus thuringiensis Genomovars
    Inwoo Baek, Kihyun Lee, Michael Goodfellow, Jongsik Chun
    Frontiers in Microbiology.2019;[Epub]     CrossRef
  • Flavobacterium lotistagni sp. nov. and Flavobacterium celericrescens sp. nov., isolated from freshwater habitats
    Jia-Hong Wu, Ya-Xiu You, Chiu-Chung Young, Soon-Wo Kwon, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Proposal of Parashewanella gen. nov. to accommodate Parashewanella curva sp. nov. and Parashewanella spongiae comb. nov. in the Shewanellaceae
    Shuailiang Xu, Kefu Yu, Hongfei Su, Biao Chen, Wen Huang, Jiayuan Liang, Yinghui Wang, Guanghua Wang
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(5): 1259.     CrossRef
  • Sulfitobacter profundi sp. nov., isolated from deep seawater
    Jaeho Song, Hye-Jin Jang, Yochan Joung, Ilnam Kang, Jang-Cheon Cho
    Journal of Microbiology.2019; 57(8): 661.     CrossRef
  • Lujinxingia litoralis gen. nov., sp. nov. and Lujinxingia sediminis sp. nov., two new representatives in the order Bradymonadales
    Ling-Yun Guo, Chang-Ming Li, Shuo Wang, Da-Shuai Mu, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(9): 2767.     CrossRef
  • Syntrophotalea acetylenivorans sp. nov., a diazotrophic, acetylenotrophic anaerobe isolated from intertidal sediments
    Shaun M. Baesman, John M. Sutton, Janna L. Fierst, Denise M. Akob, Ronald S. Oremland
    International Journal of Systematic and Evolutionary Microbiology.2019;[Epub]     CrossRef
  • Adaptations of Alteromonas sp. 76-1 to Polysaccharide Degradation: A CAZyme Plasmid for Ulvan Degradation and Two Alginolytic Systems
    Hanna Koch, Heike M. Freese, Richard L. Hahnke, Meinhard Simon, Matthias Wietz
    Frontiers in Microbiology.2019;[Epub]     CrossRef
  • Sulfurovum indicum sp. nov., a novel hydrogen- and sulfur-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal plume in the Northwestern Indian Ocean
    Shaobin Xie, Shasha Wang, Dengfeng Li, Zongze Shao, Qiliang Lai, Yejian Wang, Mingcong Wei, Xiqiu Han, Lijing Jiang
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Bacillus safensis subsp. osmophilus subsp. nov., isolated from condensed milk, and description of Bacillus safensis subsp. safensis subsp. nov.
    Ana G. Abril, Jose Luis R. Rama, Lucia Feijoo-Siota, Pilar Calo-Mata, Sergio Salazar, Alvaro Peix, Encarna Velázquez, Tomás G. Villa
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(1): 189.     CrossRef
  • Pseudomethylobacillus aquaticus gen. nov., sp. nov., a new member of the family Methylophilaceae isolated from an artificial reservoir
    Ceshing Sheu, Cheng-Ye Cai, Shih-Yi Sheu, Zhi-Hao Li, Wen-Ming Chen
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(11): 3551.     CrossRef
  • Metabolic Overlap in Environmentally Diverse Microbial Communities
    Eric R. Hester, Mike S. M. Jetten, Cornelia U. Welte, Sebastian Lücker
    Frontiers in Genetics.2019;[Epub]     CrossRef
  • Application of the Whole Genome-Based Bacterial Identification System, TrueBac ID, Using Clinical Isolates That Were Not Identified With Three Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS) Systems
    Sung-Min Ha, Chang Ki Kim, Juhye Roh, Jung-Hyun Byun, Seung-Jo Yang, Seon-Bin Choi, Jongsik Chun, Dongeun Yong
    Annals of Laboratory Medicine.2019; 39(6): 530.     CrossRef
  • Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus Aquarickettsia rohweri, gen. nov., sp. nov
    J Grace Klinges, Stephanie M Rosales, Ryan McMinds, Elizabeth C Shaver, Andrew A Shantz, Esther C Peters, Michael Eitel, Gert Wörheide, Koty H Sharp, Deron E Burkepile, Brian R Silliman, Rebecca L Vega Thurber
    The ISME Journal.2019; 13(12): 2938.     CrossRef
  • Mucilaginibacter limnophilus sp. nov., isolated from a lake
    Shih-Yi Sheu, Yi-Ru Xie, Wen-Ming Chen
    Journal of Microbiology.2019; 57(11): 967.     CrossRef
  • Diversity of Bacteria Exhibiting Bile Acid-inducible 7α-dehydroxylation Genes in the Human Gut
    Marius Vital, Tatjana Rud, Silke Rath, Dietmar H. Pieper, Dirk Schlüter
    Computational and Structural Biotechnology Journal.2019; 17: 1016.     CrossRef
  • Paraburkholderia dinghuensis sp. nov., isolated from soil
    Jia-cheng Fu, Ying-ying Lv, Jia You, Zeng-hong Gao, Bo-feng Wang, Li-hong Qiu
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(6): 1613.     CrossRef
  • Nocardioides zhouii sp. nov., isolated from the Hailuogou Glacier in China
    Guo-Qing Zhang, Qing Liu, Hong-Can Liu, Yu-Guang Zhou, Yu-Hua Xin
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(8): 2329.     CrossRef
  • Mucilaginibacter gilvus sp. nov., isolated from Antarctic soil
    Yu-Qi Yan, Yong-Xin Hao, Rui-Han He, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(12): 3885.     CrossRef
  • Paracoccus amoyensis sp. nov., isolated from the surface seawater along the coast of Xiamen Island, China
    Lina Lyu, Qiliang Lai, Jianyang Li, Zhiqiang Yu, Zongze Shao
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Neptunomonas marina sp. nov., isolated from seawater
    Wen-Ming Chen, Tsai-Ying Hsieh, Shih-Yi Sheu
    Archives of Microbiology.2019; 201(8): 1053.     CrossRef
  • Acerihabitans arboris gen. nov., sp. nov., a new member of the family Pectobacteriaceae isolated from sap drawn from Acer pictum
    Soon Dong Lee, In Seop Kim, Hanna Choe, Ji-Sun Kim
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Chakrabartia godavariana gen. nov., sp. nov., a novel member of the family Sphingomonadaceae isolated from the Godavari River, India
    Kunal Jani, Guang-Da Feng, Hong-Hui Zhu, Om Prakash, Jayashree Bandal, Vinay Rale, Yogesh Shouche, Avinash Sharma
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(8): 2452.     CrossRef
  • Hungateiclostridium mesophilum sp. nov., a mesophilic, cellulolytic and spore-forming bacterium isolated from a biogas fermenter fed with maize silage
    Regina Rettenmaier, Martin Gerbaulet, Wolfgang Liebl, Vladimir V. Zverlov
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(11): 3567.     CrossRef
  • Sphingobium terrigena sp. nov., isolated from gasoline-contaminated soil
    Yu Jin Park, Kyung Hyun Kim, Dong Min Han, Dong Ho Lee, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(8): 2459.     CrossRef
  • Trinickia dinghuensis sp. nov. and Trinickia fusca sp. nov., isolated from forest soil
    Zeng-hong Gao, Shu-fen Zhong, Yi-ning Qin, Zi Yang, Ying-ying Lv, Li-hong Qiu
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(5): 1390.     CrossRef
  • Roseithermus sacchariphilus gen. nov., sp. nov. and proposal of Salisaetaceae fam. nov., representing new family in the order Rhodothermales
    Mi-Jeong Park, Ji Hye Oh, Sung-Hyun Yang, Kae Kyoung Kwon
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(4): 1213.     CrossRef
  • Cryobacterium melibiosiphilum sp. nov., a psychrophilic bacterium isolated from glacier ice
    Qing Liu, Ji-Hui Tian, Hong-Can Liu, Yu-Guang Zhou, Yu-Hua Xin
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(10): 3276.     CrossRef
  • Flavobacterium stagni sp. nov., isolated from a freshwater reservoir
    Wen-Ming Chen, Ya-Ping Guo, Soon-Wo Kwon, Ceshing Sheu, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(8): 2372.     CrossRef
  • Dyella amyloliquefaciens sp. nov., isolated from forest soil
    Jia-cheng Fu, Zeng-hong Gao, Ting-ting Wu, Mei-hong Chen, Li-hong Qiu
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(11): 3560.     CrossRef
  • Stenotrophobium rhamnosiphilum gen. nov., sp. nov., isolated from a glacier, proposal of Steroidobacteraceae fam. nov. in Nevskiales and emended description of the family Nevskiaceae
    Qing Liu, Hong-Can Liu, Yu-Guang Zhou, Yu-Hua Xin
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(5): 1404.     CrossRef
  • Metagenomic recovery of two distinct comammox Nitrospira from the terrestrial subsurface
    Lianna Poghosyan, Hanna Koch, Adi Lavy, Jeroen Frank, Maartje A.H.J. van Kessel, Mike S.M. Jetten, Jillian F. Banfield, Sebastian Lücker
    Environmental Microbiology.2019; 21(10): 3627.     CrossRef
  • Flavivirga rizhaonensis sp. nov., a marine bacterium isolated from intertidal sand
    Ang Liu, Hong-Mei Liu, Feng Du, Shuang Wang, Long-Yu Zhao, Hong-Hua Zhang, Yun-Qing Li, Qing-Jie Xue, Xiu-Zhen Li
    Antonie van Leeuwenhoek.2019; 112(11): 1645.     CrossRef
  • Paraburkholderia acidiphila sp. nov., Paraburkholderia acidisoli sp. nov. and Burkholderia guangdongensis sp. nov., isolated from forest soil, and reclassification of Burkholderia ultramafica as Paraburkholderia ultramafica comb. nov.
    Zeng-hong Gao, Qiu-mei Zhang, Ying-ying Lv, You-qi Wang, Bing-nan Zhao, Li-hong Qiu
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Faecalibacillus intestinalis gen. nov., sp. nov. and Faecalibacillus faecis sp. nov., isolated from human faeces
    Boram Seo, Kyungchan Jeon, Inwoo Baek, Yung Mi Lee, Kiwoon Baek, GwangPyo Ko
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(7): 2120.     CrossRef
  • Hwanghaeella grinnelliae gen. nov., sp. nov., isolated from a marine red alga
    Jungeun Kim, Sang Eun Jeong, Shehzad Abid Khan, Che Ok Jeon
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(11): 3544.     CrossRef
  • Comparative Pangenomics of the Mammalian Gut Commensal Bifidobacterium longum
    Korin Albert, Asha Rani, David A. Sela
    Microorganisms.2019; 8(1): 7.     CrossRef
  • Ferruginivarius sediminum gen. nov., sp. nov., isolated from a marine solar saltern
    Shuo Wang, Zi-Hui Ye, Nan-Nan Wang, Da-Shuai Mu, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(10): 3056.     CrossRef
  • Methylobacterium oryzihabitans sp. nov., isolated from water sampled from a rice paddy field
    Wen-Ming Chen, Cheng-Ye Cai, Zhi-Hao Li, Chiu-Chung Young, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(12): 3843.     CrossRef
  • Genome-based reclassification of Weissella jogaejeotgali as a later heterotypic synonym of Weissella thailandensis
    Min-Jung Kwak, Seon-Bin Choi, Byung-Yong Kim, Jongsik Chun
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(12): 3672.     CrossRef
  • Lysobacter penaei sp. nov., isolated from intestinal content of a Pacific white shrimp (Penaeus vannamei)
    Shuaishuai Xu, Anzhang Li, Ming-Xia Zhang, Qing Yao, Honghui Zhu
    International Journal of Systematic and Evolutionary Microbiology .2019;[Epub]     CrossRef
  • Taxogenomics Resolves Conflict in the Genus Rhodobacter: A Two and Half Decades Pending Thought to Reclassify the Genus Rhodobacter
    G. Suresh, Tushar D. Lodha, B. Indu, Ch. Sasikala, Ch. V. Ramana
    Frontiers in Microbiology.2019;[Epub]     CrossRef
  • Flavobacterium sufflavum sp. nov., isolated from a freshwater lake
    Wen-Ming Chen, Yi-Ru Xie, Soon-Wo Kwon, Shih-Yi Sheu
    International Journal of Systematic and Evolutionary Microbiology.2019; 69(6): 1705.     CrossRef
  • Oceaniglobus ichthyenteri sp. nov., isolated from the gut microflora of sea bass (Dicentrarchus labrax L.) and emended description of the genus Oceaniglobus
    Nan-Nan Wang, Liu-Yan Zhou, Xin-Peng Wang, Ying-Xiu Li, Zong-Jun Du
    International Journal of Systematic and Evolutionary Microbiology .2019; 69(9): 2892.     CrossRef
  • Ruegeria denitrificans sp. nov., a marine bacterium in the family Rhodobacteraceae with the potential ability for cyanophycin synthesis
    David R. Arahal, Teresa Lucena, Lidia Rodrigo-Torres, María J. Pujalte
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(8): 2515.     CrossRef
  • Lawsonibacter asaccharolyticus gen. nov., sp. nov., a butyrate-producing bacterium isolated from human faeces
    Mitsuo Sakamoto, Takao Iino, Masahiro Yuki, Moriya Ohkuma
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(6): 2074.     CrossRef
  • Defining the Species Micromonospora saelicesensis and Micromonospora noduli Under the Framework of Genomics
    Raúl Riesco, Lorena Carro, Brenda Román-Ponce, Carlos Prieto, Jochen Blom, Hans-Peter Klenk, Philippe Normand, Martha E. Trujillo
    Frontiers in Microbiology.2018;[Epub]     CrossRef
  • Phenotypic and Genomic Properties of Brachybacterium vulturis sp. nov. and Brachybacterium avium sp. nov.
    Euon J. Tak, Pil S. Kim, Dong-Wook Hyun, Hyun S. Kim, June-Young Lee, Woorim Kang, Hojun Sung, Na-Ri Shin, Min-Soo Kim, Tae W. Whon, Jin-Woo Bae
    Frontiers in Microbiology.2018;[Epub]     CrossRef
  • Phylogeny Trumps Chemotaxonomy: A Case Study Involving Turicella otitidis
    Inwoo Baek, Mincheol Kim, Imchang Lee, Seong-In Na, Michael Goodfellow, Jongsik Chun
    Frontiers in Microbiology.2018;[Epub]     CrossRef
  • A Phylogenomic and Molecular Markers Based Analysis of the Class Acidimicrobiia
    Danyu Hu, Guihong Cha, Beile Gao
    Frontiers in Microbiology.2018;[Epub]     CrossRef
  • Roseivivax atlanticus (Li, Lai, Liu, Sun and Shao, 2015) is a later heterotypic synonym of Roseivivax marinus (Dai, Shi, Gao, Liu and Zhang, 2014)
    Alexandra La Mura, David R. Arahal, María J. Pujalte
    International Journal of Systematic and Evolutionary Microbiology.2018; 68(8): 2650.     CrossRef
Proteome analysis reveals global response to deletion of mrflbA in Monascus ruber
Qingqing Yan , Zhouwei Zhang , Yishan Yang , Fusheng Chen , Yanchun Shao
J. Microbiol. 2018;56(4):255-263.   Published online February 28, 2018
DOI: https://doi.org/10.1007/s12275-018-7425-8
  • 348 View
  • 0 Download
  • 4 Crossref
AbstractAbstract PDF
Monascus spp. are commonly used for a wide variety of applications in the food and pharmaceutical industries. In previous studies, the knock-out of mrflbA (a putative regulator of the G protein α subunit) in M. ruber led to autolysis of the mycelia, decreased pigmentation and lowered mycotoxin production. Therefore, we aimed to obtain a comprehensive overview of the underlying mechanism of mrflbA deletion at the proteome level. A two-dimensional gel electrophoresis analysis of mycelial proteins indicated that the abundance of 178 proteins was altered in the ΔmrflbA strain, 33 of which were identified with high confidence. The identified proteins are involved in a range of activities, including carbohydrate and amino acid metabolism, hyphal development and the oxidative stress response, protein modification, and the regulation of cell signaling. Consistent with these findings, the activity of antioxidative enzymes and chitinase was elevated in the supernatant of the ΔmrflbA strain. Furthermore, deletion of mrflbA resulted in the transcriptional reduction of secondary metabolites (pigment and mycotoxin). In short, the mutant phenotypes induced by the deletion of mrflbA were consistent with changes in the expression levels of associated proteins, providing direct evidence of the regulatory functions mediated by mrflbA in M. ruber.

Citations

Citations to this article as recorded by  
  • Histone deacetylase MrHos3 negatively regulates the production of citrinin and pigments in Monascus ruber
    Qianrui Liu, Yunfan Zheng, Baixue Liu, Fufang Tang, Yanchun Shao
    Journal of Basic Microbiology.2023; 63(10): 1128.     CrossRef
  • Histone deacetylase MrRpd3 plays a major regulational role in the mycotoxin production of Monascus ruber
    Yunfan Zheng, Yueyan Huang, Zejing Mao, Yanchun Shao
    Food Control.2022; 132: 108457.     CrossRef
  • Characterization of key upstream asexual developmental regulators in Monascus ruber M7
    Lili Jia, Yuyun Huang, Jae-Hyuk Yu, Marc Stadler, Yanchun Shao, Wanping Chen, Fusheng Chen
    Food Bioscience.2022; 50: 102153.     CrossRef
  • Quantitative Proteomics Analysis by Sequential Window Acquisition of All Theoretical Mass Spectra–Mass Spectrometry Reveals Inhibition Mechanism of Pigments and Citrinin Production of Monascus Response to High Ammonium Chloride Concentration
    Bo Zhou, Yifan Ma, Yuan Tian, Jingbo Li, Haiyan Zhong
    Journal of Agricultural and Food Chemistry.2020; 68(3): 808.     CrossRef
NMR-based metabolomics reveals the metabolite profiles of Vibrio parahaemolyticus under ferric iron stimulation
Jun Zhou , Chenyang Lu , Dijun Zhang , Chennv Ma , Xiurong Su
J. Microbiol. 2017;55(8):628-634.   Published online July 28, 2017
DOI: https://doi.org/10.1007/s12275-017-6551-z
  • 388 View
  • 0 Download
  • 6 Crossref
AbstractAbstract PDF
Vibrio parahaemolyticus is a halophilic bacterium endemic to coastal areas, and its pathogenicity has caused widespread seafood poisoning. In our previous research, the protein expression of V. parahaemolyticus in Fe3+ medium was determined using isobaric tags for relative and absolute quantitation (iTRAQ). Here, nuclear magnetic resonance (NMR) was used to detect changes in the V. parahaemolyticus metabolome. NMR spectra were obtained using methanol-water extracts of intracellular metabolites from V. parahaemolyticus under various culture conditions, and 62 metabolites were identified, including serine, arginine, alanine, ornithine, tryptophan, glutamine, malate, NAD+, NADP+, oxypurinol, xanthosine, dCTP, uracil, thymine, hypoxanthine, and betaine. Among these, 21 metabolites were up-regulated after the stimulation of the cells by ferric iron, and 9 metabolites were down-regulated. These metabolites are involved in amino acid and protein synthesis, energy metabolism, DNA and RNA synthesis and osmolality. Based on these results, we conclude that Fe3+ influences the metabolite profiles of V. parahaemolyticus.

Citations

Citations to this article as recorded by  
  • Multifunctional Bimetallic Nanoreactors for Integrative Host‐Pathogen Analysis Toward Bloodstream Infection Diagnosis
    Ayizekeranmu Yiming, Yuewei Zhao, Hongwei Meng, Shouzhi Yang, Chunmeng Ding, Ruiming Wang, Haiyang Su, Wei Chen, Wanshan Liu, Yan Zhou, Xvelian Li, Haojie Jin, Jiayi Wang, Kun Qian, Lin Huang
    Advanced Functional Materials.2025;[Epub]     CrossRef
  • Potential role of alginate in marine bacteria-yeast interactions
    Shota Nakata, Ryuichi Takase, Shigeyuki Kawai, Kohei Ogura, Wataru Hashimoto, Jennifer B. Glass
    Applied and Environmental Microbiology.2024;[Epub]     CrossRef
  • ZrgA contributes to zinc acquisition in Vibrio parahaemolyticus
    Chengkun Zheng, Jun Qiu, Yimeng Zhai, Man Wei, Xiaohui Zhou, Xinan Jiao
    Virulence.2023;[Epub]     CrossRef
  • 1H NMR-based water-soluble lower molecule characterization and fatty acid composition of Chinese native chickens and commercial broiler
    Zhichao Xiao, Wangang Zhang, Hongtao Yang, Ziyu Yan, Changrong Ge, Guozhou Liao, Huawei Su
    Food Research International.2021; 140: 110008.     CrossRef
  • Itaconic acid inhibits growth of a pathogenic marine Vibrio strain: A metabolomics approach
    Thao Van Nguyen, Andrea C. Alfaro, Tim Young, Saras Green, Erica Zarate, Fabrice Merien
    Scientific Reports.2019;[Epub]     CrossRef
  • New Insights Into the Response of Metabolome of Escherichia coli O157:H7 to Ohmic Heating
    Xiaojing Tian, Qianqian Yu, Donghao Yao, Lele Shao, Zhihong Liang, Fei Jia, Xingmin Li, Teng Hui, Ruitong Dai
    Frontiers in Microbiology.2018;[Epub]     CrossRef
The protein and neutral lipid composition of lipid droplets isolated from the fission yeast, Schizosaccharomyces pombe
Alex Meyers , Karuna Chourey , Taylor M. Weiskittel , Susan Pfiffner , John R. Dunlap , Robert L. Hettich , Paul Dalhaimer
J. Microbiol. 2017;55(2):112-122.   Published online January 26, 2017
DOI: https://doi.org/10.1007/s12275-017-6205-1
  • 367 View
  • 0 Download
  • 16 Crossref
AbstractAbstract PDF
Lipid droplets consist of a core of neutral lipids surrounded by a phospholipid monolayer with bound proteins. Much of the information on lipid droplet function comes from proteomic and lipodomic studies that identify the components of droplets isolated from organisms throughout the phylogenetic tree. Here, we add to that important inventory by reporting lipid droplet factors from the fission yeast, Schizosaccharomyces pombe. Unique to this study was the fact that cells were cultured in three different environments: 1) late log growth phase in glucose-based media, 2) stationary phase in glucosebased media, and 3) late log growth phase in media containing oleic acid. We confirmed colocalization of major factors with lipid droplets using live-cell fluorescent microscopy. We also analyzed droplets from each of the three conditions for sterol ester (SE) and triacylglycerol (TAG) content, along with their respective fatty acid compositions. We identified a previously undiscovered lipid droplet protein, Vip1p, which affects droplet size distribution. The results provide further insight into the workings of these ubiquitous organelles.

Citations

Citations to this article as recorded by  
  • Cbf11 and Mga2 function together to activate transcription of lipid metabolism genes and promote mitotic fidelity in fission yeast
    Anna Marešová, Michaela Grulyová, Miluše Hradilová, Viacheslav Zemlianski, Jarmila Princová, Martin Převorovský, Cathy Savage-Dunn
    PLOS Genetics.2024; 20(12): e1011509.     CrossRef
  • Mild Heat Stress Alters the Physical State and Structure of Membranes in Triacylglycerol-Deficient Fission Yeast, Schizosaccharomyces pombe
    Péter Gudmann, Imre Gombos, Mária Péter, Gábor Balogh, Zsolt Török, László Vígh, Attila Glatz
    Cells.2024; 13(18): 1543.     CrossRef
  • Lipid droplets: a cellular organelle vital in cancer cells
    Yi Jin, Yanjie Tan, Jian Wu, Zhuqing Ren
    Cell Death Discovery.2023;[Epub]     CrossRef
  • Oleaginous yeasts: Time to rethink the definition?
    José Manuel Salvador López, Meriam Vandeputte, Inge N. A. Van Bogaert
    Yeast.2022; 39(11-12): 553.     CrossRef
  • Proteomic and lipidomic analyses of lipid droplets in Aurantiochytrium limacinum ATCC MYA-1381
    Kohei Yoneda, Yohei Ishibashi, Masaki Yoshida, Makoto M. Watanabe, Makoto Ito, Iwane Suzuki
    Algal Research.2022; 67: 102844.     CrossRef
  • ER-localized phosphatidylethanolamine synthase plays a conserved role in lipid droplet formation
    Mehmet Oguz Gok, Natalie Ortiz Speer, W. Mike Henne, Jonathan R. Friedman, James Olzmann
    Molecular Biology of the Cell.2022;[Epub]     CrossRef
  • Lipid Droplet Nucleation
    Abdou Rachid Thiam, Elina Ikonen
    Trends in Cell Biology.2021; 31(2): 108.     CrossRef
  • Metabolism of Storage Lipids and the Role of Lipid Droplets in the Yeast Schizosaccharomyces pombe
    Ivan Hapala, Peter Griac, Roman Holic
    Lipids.2020; 55(5): 513.     CrossRef
  • Lipid Droplets in Neurodegenerative Disorders
    Brandon C. Farmer, Adeline E. Walsh, Jude C. Kluemper, Lance A. Johnson
    Frontiers in Neuroscience.2020;[Epub]     CrossRef
  • Harnessing the Power of Mutagenesis and Adaptive Laboratory Evolution for High Lipid Production by Oleaginous Microalgae and Yeasts
    Neha Arora, Hong-Wei Yen, George P. Philippidis
    Sustainability.2020; 12(12): 5125.     CrossRef
  • Mechanisms of protein targeting to lipid droplets: A unified cell biological and biophysical perspective
    Ravi Dhiman, Stefanie Caesar, Abdou Rachid Thiam, Bianca Schrul
    Seminars in Cell & Developmental Biology.2020; 108: 4.     CrossRef
  • The New Face of the Lipid Droplet: Lipid Droplet Proteins
    Congyan Zhang, Pingsheng Liu
    PROTEOMICS.2019;[Epub]     CrossRef
  • Effect of Selenium on Lipid and Amino Acid Metabolism in Yeast Cells
    Marek Kieliszek, Stanisław Błażejak, Anna Bzducha-Wróbel, Anna M. Kot
    Biological Trace Element Research.2019; 187(1): 316.     CrossRef
  • The Peroxygenase Activity of the Aspergillus flavus Caleosin, AfPXG, Modulates the Biosynthesis of Aflatoxins and Their Trafficking and Extracellular Secretion via Lipid Droplets
    Abdulsamie Hanano, Mari Alkara, Ibrahem Almousally, Mouhnad Shaban, Farzana Rahman, Mehedi Hassan, Denis J. Murphy
    Frontiers in Microbiology.2018;[Epub]     CrossRef
  • Mitotic defects in fission yeast lipid metabolism ‘cut’ mutants are suppressed by ammonium chloride
    Róbert Zach, Jarmila Tvarůžková, Martin Schätz, Ondřej Ťupa, Beáta Grallert, Martin Převorovský
    FEMS Yeast Research.2018;[Epub]     CrossRef
  • Lipid Droplets: Formation to Breakdown
    Alex Meyers, Taylor M. Weiskittel, Paul Dalhaimer
    Lipids.2017; 52(6): 465.     CrossRef
Proteomic characterization of the outer membrane vesicle of the halophilic marine bacterium Novosphingobium pentaromativorans US6-1
Sung Ho Yun , Sang-Yeop Lee , Chi-Won Choi , Hayoung Lee , Hyun-Joo Ro , Sangmi Jun , Yong Min Kwon , Kae Kyoung Kwon , Sang-Jin Kim , Gun-Hwa Kim , Seung Il Kim
J. Microbiol. 2017;55(1):56-62.   Published online December 30, 2016
DOI: https://doi.org/10.1007/s12275-017-6581-6
  • 403 View
  • 0 Download
  • 17 Crossref
AbstractAbstract PDF
Novosphingobium pentaromativorans US6-1 is a Gram-negative halophilic marine bacterium able to utilize several polycyclic aromatic hydrocarbons such as phenanthrene, pyrene, and benzo[a]pyrene. In this study, using transmission electron microscopy, we confirmed that N. pentaromativorans US6-1 produces outer membrane vesicles (OMVs). N. pentaromativorans OMVs (hereafter OMVNovo) are spherical in shape, and the average diameter of OMVNovo is 25–70 nm. Proteomic analysis revealed that outer membrane proteins and periplasmic proteins of N. pentaromativorans are the major protein components of OMVNovo. Comparative proteomic analysis with the membrane-associated protein fraction and correlation analysis demonstrated that the outer membrane proteins of OMVNovo originated from the membrane- associated protein fraction. To the best of our knowledge, this study is the first to characterize OMV purified from halophilic marine bacteria.

Citations

Citations to this article as recorded by  
  • Bacterial extracellular vesicles: Vital contributors to physiology from bacteria to host
    Xinke Nie, Qiqiong Li, Xinyang Chen, Stanley Onyango, Junhua Xie, Shaoping Nie
    Microbiological Research.2024; 284: 127733.     CrossRef
  • Marine Delivery Vehicles: Molecular Components and Applications of Bacterial Extracellular Vesicles
    Angela Casillo, Raffaele D’Amico, Rosa Lanzetta, Maria Michela Corsaro
    Marine Drugs.2024; 22(8): 363.     CrossRef
  • Impact of probiotics-derived extracellular vesicles on livestock gut barrier function
    Yuhan Zhang, Mengzhen Song, Jinping Fan, Xuming Guo, Shiyu Tao
    Journal of Animal Science and Biotechnology.2024;[Epub]     CrossRef
  • Genomic and physiological characterization of Novosphingobium terrae sp. nov., an alphaproteobacterium isolated from Cerrado soil containing a mega-sized chromid
    Aline Belmok, Felipe Marques de Almeida, Rodrigo Theodoro Rocha, Carla Simone Vizzotto, Marcos Rogério Tótola, Marcelo Henrique Soller Ramada, Ricardo Henrique Krüger, Cynthia Maria Kyaw, Georgios J. Pappas
    Brazilian Journal of Microbiology.2023; 54(1): 239.     CrossRef
  • The relationship between bacterial outer membrane vesicles and halophilic adaptation
    Dilan Barut, Blaise M. Enuh, Burak Derkuş, Ülkü Güler, Bekir Salih, Pınar Aytar Çelik
    Molecular Omics.2023; 19(2): 174.     CrossRef
  • Proteomic and Functional Analyses of Outer Membrane Vesicles Secreted by Vibrio splendidus
    Huimin Song, Yilong Ruan, Ya Li, Huirong Yang, Weiwei Zhang
    Journal of Ocean University of China.2023; 22(5): 1361.     CrossRef
  • Bacterial membrane vesicle functions, laboratory methods, and applications
    Pınar Aytar Çelik, Burak Derkuş, Kübra Erdoğan, Dilan Barut, Enuh Blaise Manga, Yalın Yıldırım, Simon Pecha, Ahmet Çabuk
    Biotechnology Advances.2022; 54: 107869.     CrossRef
  • Prochlorococcus extracellular vesicles: molecular composition and adsorption to diverse microbes
    Steven J. Biller, Rachel A. Lundeen, Laura R. Hmelo, Kevin W. Becker, Aldo A. Arellano, Keven Dooley, Katherine R. Heal, Laura T. Carlson, Benjamin A. S. Van Mooy, Anitra E. Ingalls, Sallie W. Chisholm
    Environmental Microbiology.2022; 24(1): 420.     CrossRef
  • Benzo[a]pyrene might be transported by a TonB-dependent transporter in Novosphingobium pentaromativorans US6-1
    Jiaqing Liang, Jiantao Xu, Weijun Zhao, Jiaofeng Wang, Kai Chen, Yuqian Li, Yun Tian
    Journal of Hazardous Materials.2021; 404: 124037.     CrossRef
  • Isolation and Characterization of Outer Membrane Vesicles of Pectobacterium brasiliense 1692
    Silindile Maphosa, Lucy Novungayo Moleleki
    Microorganisms.2021; 9(9): 1918.     CrossRef
  • Eco-evolutionary feedbacks mediated by bacterial membrane vesicles
    Nikola Zlatkov, Aftab Nadeem, Bernt Eric Uhlin, Sun Nyunt Wai
    FEMS Microbiology Reviews.2021;[Epub]     CrossRef
  • Analysis of the Extracellular Proteome of Colistin-Resistant Korean Acinetobacter baumannii Strains
    Sang-Yeop Lee, Sung Ho Yun, Hayoung Lee, Yoon-Sun Yi, Edmond Changkyun Park, Wooyoung Kim, Hye-Yeon Kim, Je Chul Lee, Gun-Hwa Kim, Seung Il Kim
    ACS Omega.2020; 5(11): 5713.     CrossRef
  • Comprehensive proteomic analysis and pathogenic role of membrane vesicles of Listeria monocytogenes serotype 4b reveals proteins associated with virulence and their possible interaction with host
    Raman Karthikeyan, Pratapa Gayathri, Paramasamy Gunasekaran, Medicharla V. Jagannadham, Jeyaprakash Rajendhran
    International Journal of Medical Microbiology.2019; 309(3-4): 199.     CrossRef
  • Novosphingobium sp. PP1Y as a novel source of outer membrane vesicles
    Federica De Lise, Francesca Mensitieri, Giulia Rusciano, Fabrizio Dal Piaz, Giovanni Forte, Flaviana Di Lorenzo, Antonio Molinaro, Armando Zarrelli, Valeria Romanucci, Valeria Cafaro, Antonio Sasso, Amelia Filippelli, Alberto Di Donato, Viviana Izzo
    Journal of Microbiology.2019; 57(6): 498.     CrossRef
  • Proteomic and Metabolomic Analyses of Xylella fastidiosa OMV-Enriched Fractions Reveal Association with Virulence Factors and Signaling Molecules of the DSF Family
    Oséias R. Feitosa-Junior, Eliezer Stefanello, Paulo A. Zaini, Rafael Nascimento, Paulo M. Pierry, Abhaya M. Dandekar, Steven E. Lindow, Aline M. da Silva
    Phytopathology®.2019; 109(8): 1344.     CrossRef
  • Biophysical restriction of growth area using a monodispersed gold sphere nanobarrier prolongs the mitotic phase in HeLa cells
    Dae-Woong Jung, Hyun-Joo Ro, Junmin Kim, Seung Il Kim, Gi-Ra Yi, Gaehang Lee, Sangmi Jun
    RSC Advances.2019; 9(64): 37497.     CrossRef
  • Extracellular membrane vesicles in the three domains of life and beyond
    Sukhvinder Gill, Ryan Catchpole, Patrick Forterre
    FEMS Microbiology Reviews.2019; 43(3): 273.     CrossRef
Metagenomic analysis reveals the contribution of anaerobic methanotroph-1b in the oxidation of methane at the Ulleung Basin, East Sea of Korea
Jin-Woo Lee , Kae Kyoung Kwon , Jang-Jun Bahk , Dong-Hun Lee , Hyun Sook Lee , Sung Gyun Kang , Jung-Hyun Lee
J. Microbiol. 2016;54(12):814-822.   Published online November 26, 2016
DOI: https://doi.org/10.1007/s12275-016-6379-y
  • 363 View
  • 0 Download
  • 4 Crossref
AbstractAbstract PDF
We have previously identified a sulfate methane transition zone (SMTZ) within the methane hydrate-bearing sediment in the Ulleung Basin, East Sea of Korea, and the presence of ANME-1b group in the sediment has been shown by phylogenetic analysis of a 16S rRNA gene. Herein, we describe taxonomic and functional profiling in the SMTZ sample by metagenomic analysis, comparing with that of surface sediment. Metagenomic sequences of 115 Mbp and 252 Mbp were obtained from SMTZ and surface sediments, respectively. The taxonomic profiling using BLASTX against the SEED within MG-RAST showed the prevalence of methanogens (19.1%), such as Methanosarcinales (12.0%) and Methanomicrobiales (4.1%) predominated within the SMTZ metagenome. A number of 185,200 SMTZ reads (38.9%) and 438,484 surface reads (62.5%) were assigned to functional categories, and methanogenesis-related reads were statistically significantly overrepresented in the SMTZ metagenome. However, the mapping analysis of metagenome reads to the reference genomes, most of the sequences of the SMTZ metagenome were mapped to ANME-1 draft genomes, rather than those of methanogens. Furthermore, the two copies of the methyl-coenzyme M reductase gene (mcrA) segments of the SMTZ metagenome were clustered with ANME-1b in the phylogenetic cluster. These results indicate that ANME- 1b reads were miss-annotated to methanogens due to limitation of database. Many of key genes necessary for reverse methanogenesis were present in the SMTZ metagenome, except for N5,N10-methenyl-H4MPT reductase (mer) and CoBCoM heterodisulfide reductase subunits D and E (hdrDE). These data suggest that the ANME-1b represents the primary player the anaerobic methane oxidation in the SMTZ, of the methane hydrate-bearing sediment at the Ulleung Basin, East Sea of Korea.

Citations

Citations to this article as recorded by  
  • Methane seepage intensity distinguish microbial communities in sediments at the Mid-Okinawa Trough
    Youzhi Xin, Nengyou Wu, Zhilei Sun, Hongmei Wang, Ye Chen, Cuiling Xu, Wei Geng, Hong Cao, Xilin Zhang, Bin Zhai, Dawei Yan
    Science of The Total Environment.2022; 851: 158213.     CrossRef
  • Anthropogenic and Environmental Constraints on the Microbial Methane Cycle in Coastal Sediments
    Anna J. Wallenius, Paula Dalcin Martins, Caroline P. Slomp, Mike S. M. Jetten
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Roles of Organohalide-Respiring Dehalococcoidia in Carbon Cycling
    Yi Yang, Robert Sanford, Jun Yan, Gao Chen, Natalie L. Cápiro, Xiuying Li, Frank E. Löffler, Nick Bouskill
    mSystems.2020;[Epub]     CrossRef
  • Community structure and distribution of benthic Bacteria and Archaea in a stratified coastal lagoon in the Southern Gulf of Mexico
    Santiago Cadena, M. Leopoldina Aguirre-Macedo, Daniel Cerqueda-García, Francisco J. Cervantes, Jorge A. Herrera-Silveira, José Q. García-Maldonado
    Estuarine, Coastal and Shelf Science.2019; 230: 106433.     CrossRef
A computationally simplistic poly-phasic approach to explore microbial communities from the Yucatan aquifer as a potential sources of novel natural products
Marfil-Santana Miguel David , O’Connor-Sánchez Aileen , Ramírez-Prado Jorge Humberto , De los Santos-Briones Cesar , López- Aguiar , Lluvia Korynthia , Rojas-Herrera Rafael , Lago-Lestón Asunción , Prieto-Davó Alejandra
J. Microbiol. 2016;54(11):774-781.   Published online October 29, 2016
DOI: https://doi.org/10.1007/s12275-016-6092-x
  • 361 View
  • 0 Download
  • 3 Crossref
AbstractAbstract PDF
The need for new antibiotics has sparked a search for the microbes that might potentially produce them. Current sequencing technologies allow us to explore the biotechnological potential of microbial communities in diverse environments without the need for cultivation, benefitting natural product discovery in diverse ways. A relatively recent method to search for the possible production of novel compounds includes studying the diverse genes belonging to polyketide synthase pathways (PKS), as these complex enzymes are an important source of novel therapeutics. In order to explore the biotechnological potential of the microbial community from the largest underground aquifer in the world located in the Yucatan, we used a polyphasic approach in which a simple, non-computationally intensive method was coupled with direct amplification of environmental DNA to assess the diversity and novelty of PKS type I ketosynthase (KS) domains. Our results suggest that the bioinformatic method proposed can indeed be used to assess the novelty of KS enzymes; nevertheless, this in silico study did not identify some of the KS diversity due to primer bias and stringency criteria outlined by the metagenomics pipeline. Therefore, additionally implementing a method involving the direct cloning of KS domains enhanced our results. Compared to other freshwater environments, the aquifer was characterized by considerably less diversity in relation to known ketosynthase domains; however, the metagenome included a family of KS type I domains phylogenetically related, but not identical, to those found in the curamycin pathway, as well as an outstanding number of thiolases. Over all, this first look into the microbial community found in this large Yucatan aquifer and other fresh water free living microbial communities highlights the potential of these previously overlooked environments as a source of novel natural products.

Citations

Citations to this article as recorded by  
  • Biosynthetic potential of the sediment microbial subcommunities of an unexplored karst ecosystem and its ecological implications
    Pablo Suárez‐Moo, Alejandra Prieto‐Davó
    MicrobiologyOpen.2024;[Epub]     CrossRef
  • Changes in the sediment microbial community structure of coastal and inland sinkholes of a karst ecosystem from the Yucatan peninsula
    Pablo Suárez-Moo, Claudia A. Remes-Rodríguez, Norma A. Márquez-Velázquez, Luisa I. Falcón, José Q. García-Maldonado, Alejandra Prieto-Davó
    Scientific Reports.2022;[Epub]     CrossRef
  • Insights into the Chemical Diversity of Selected Fungi from the Tza Itzá Cenote of the Yucatan Peninsula
    Carlos A. Fajardo-Hernández, Firoz Shah Tuglak Khan, Laura Flores-Bocanegra, Alejandra Prieto-Davó, Baojie Wan, Rui Ma, Mallique Qader, Rodrigo Villanueva-Silva, Anahí Martínez-Cárdenas, Marian A. López-Lobato, Shabnam Hematian, Scott G. Franzblau, Huzefa
    ACS Omega.2022; 7(14): 12171.     CrossRef
Research Support, Non-U.S. Gov't
Enhanced method for microbial community DNA extraction and purification from agricultural yellow loess soil
Mathur Nadarajan Kathiravan , Geun Ho Gim , Jaewon Ryu , Pyung Il Kim , Chul Won Lee , Si Wouk Kim
J. Microbiol. 2015;53(11):767-775.   Published online October 28, 2015
DOI: https://doi.org/10.1007/s12275-015-5454-0
  • 401 View
  • 0 Download
  • 12 Crossref
AbstractAbstract
In this study, novel DNA extraction and purification methods were developed to obtain high-quantity and reliable quality DNA from the microbial community of agricultural yellow loess soil samples. The efficiencies of five different soil DNAextraction protocols were evaluated on the basis of DNA yield, quality and DNA shearing. Our suggested extraction
method
, which used CTAB, EDTA and cell membrane lytic enzymes in the extraction followed by DNA precipitation using isopropanol, yielded a maximum DNA content of 42.28 ± 5.59 μg/g soil. In addition, among the five different purification protocols, the acid-treated polyvinyl polypyrrolidone (PVPP) spin column purification method yielded high-quality DNA and recovered 91% of DNA from the crude DNA. Spectrophotometry revealed that the ultraviolet A260/A230 and A260/A280 absorbance ratios of the purified DNA were 1.82 ± 0.03 and 1.94 ± 0.05, respectively. PCR-based 16S rRNA amplification showed clear bands at ~1.5 kb with acid-treated PVPP–purified DNA templates. In conclusion, our suggested extraction and purification protocols can be used to recover high concentration, high purity, and high-molecular-weight DNA from clay and silica-rich agricultural soil samples.

Citations

Citations to this article as recorded by  
  • DNA of the three elements: development of molecular genetic techniques in environmental research
    Svetlana Galkina
    Priroda.2025; (2(1314)): 3.     CrossRef
  • Inhibitory Effect of Volatiles from Flavobacterium johnsoniae TR-18 on Aspergillus flavus Growth and Aflatoxin Production
    Andong Gong, Jingrong Liu, Gaozhan Wang, Mengge Song, Jianhua Wang, Jingbo Zhang
    Plant Disease.2025; 109(2): 471.     CrossRef
  • Better Performance of Organic Fertilizer on Improving Yield and Reducing Nitrogen Losses in a Paddy Field as Compared to Biochar-Based Fertilizer
    Ke Wang, Shanshan Ying
    Water, Air, & Soil Pollution.2025;[Epub]     CrossRef
  • TACKLING THE SOIL MICROBIOME – CHALLENGES AND OPORTUNITIES
    Andreea-Mihaela Mlesnita
    Journal of Experimental and Molecular Biology.2024;[Epub]     CrossRef
  • Effects of sodium sulfide application on the growth of Robinia pseudoacacia, heavy metal immobilization, and soil microbial activity in Pb–Zn polluted soil
    Xiangyu Zhang, Xiao Lou, Haoqiang Zhang, Wei Ren, Ming Tang
    Ecotoxicology and Environmental Safety.2020; 197: 110563.     CrossRef
  • Biases from different DNA extraction methods in intestine microbiome research based on 16S rDNA sequencing: a case in the koi carp, Cyprinus carpio var. Koi
    Zhuoran Han, Jingfeng Sun, Aijun Lv, Anli Wang
    MicrobiologyOpen.2019;[Epub]     CrossRef
  • Isolation of PCR-quality Genomic DNA from Soils Impacted with Extra Heavy Crude Oil
    Laynet Angerlyn Puentes , Yusibeska Ramos, Ysvic Inojosa, César Rivera, Angela De Sisto
    BIO-PROTOCOL.2019;[Epub]     CrossRef
  • Impact of DNA extraction methods on the observed microbial communities from the intestinal flora of the penaeid shrimp Litopenaeus vannamei
    Boyun Jiang, Jingfeng Sun, Aijun Lv, Xiucai Hu, Hongyue Shi, YeongYik Sung, Qingkui Wang, Yang Wang
    FEMS Microbiology Letters.2019;[Epub]     CrossRef
  • Illumina sequencing and assessment of new cost-efficient protocol for metagenomic-DNA extraction from environmental water samples
    Mariam Hassan, Tamer Essam, Salwa Megahed
    Brazilian Journal of Microbiology.2018; 49: 1.     CrossRef
  • A modified method for genomic DNA extraction from the fish intestinal microflora
    Zhuoran Han, Jingfeng Sun, Aijun Lv, YeongYik Sung, Xueliang Sun, Hongyue Shi, Xiucai Hu, Anli Wang, Kezhi Xing
    AMB Express.2018;[Epub]     CrossRef
  • Isolation of nematode DNA from 100 g of soil using Fe3O4 super paramagnetic nanoparticles
    Adrienne M. Gorny, Frank S. Hay, Xiaohong Wang, Sarah J. Pethybridge
    Nematology.2018; 20(3): 271.     CrossRef
  • Evaluation of the Punch-it™ NA-Sample kit for detecting microbial DNA in blood culture bottles using PCR-reverse blot hybridization assay
    Jungho Kim, Hye-young Wang, Seoyong Kim, Soon Deok Park, Kwangmin Yu, Hyo Youl Kim, Young Uh, Hyeyoung Lee
    Journal of Microbiological Methods.2016; 128: 24.     CrossRef
Review
Counts and sequences, observations that continue to change our understanding of viruses in nature
K. Eric Wommack , Daniel J. Nasko , Jessica Chopyk , Eric G. Sakowski
J. Microbiol. 2015;53(3):181-192.   Published online March 3, 2015
DOI: https://doi.org/10.1007/s12275-015-5068-6
  • 440 View
  • 0 Download
  • 48 Crossref
AbstractAbstract PDF
The discovery of abundant viruses in the oceans and on land has ushered in a quarter century of groundbreaking advancements in our understanding of viruses within ecosystems. Two types of observations from environmental samples - direct counts of viral particles and viral metagenomic sequences - have been critical to these discoveries. Accurate direct counts have established ecosystem-scale trends in the impacts of viral infection on microbial host populations and have shown that viral communities within aquatic and soil environments respond to both short term and seasonal environmental change. Direct counts have been critical for estimating viral production rate, a measurement essential to quantifying the implications of viral infection for the biogeochemical cycling of nutrients within ecosystems. While direct counts have defined the magnitude of viral processes; shotgun sequences of environmental viral DNA - virome sequences - have enabled researchers to estimate the diversity and composition of natural viral communities. Virome-enabled studies have found the virioplankton to contain thousands of viral genotypes in communities where the most dominant viral population accounts for a small fraction of total abundance followed by a long tail of diverse populations. Detailed examination of long virome sequences has led to new understanding of genotype-to-phenotype connections within marine viruses and revealed that viruses carry metabolic genes that are important to maintaining cellular energy during viral replication. Increased access to long virome sequences will undoubtedly reveal more genetic secrets of viruses and enable us to build a genomics rulebook for predicting key biological and ecological features of unknown viruses.

Citations

Citations to this article as recorded by  
  • A systematic scoping review reveals that geographic and taxonomic patterns influence the scientific and societal interest in urban soil microbial diversity
    Simon Masson, Matteo Chialva, Davide Bongiovanni, Martino Adamo, Irene Stefanini, Luisa Lanfranco
    Environmental Microbiome.2025;[Epub]     CrossRef
  • Metagenomic analysis of viral communities in the polluted Varuna River reveals site-specific diversity patterns associated with environmental aspects
    Arpit Srivastava, Piyush Kant Rai, Vivek Kumar Agnihotri, Kamlesh Choure, Reena Vishvakarma
    International Microbiology.2025; 28(7): 2129.     CrossRef
  • Comparative Analysis Reveals Host Species-Dependent Diversity Among 16 Virulent Bacteriophages Isolated Against Soybean Bradyrhizobium spp.
    Emily A. Morgese, Barbra D. Ferrell, Spencer C. Toth, Shawn W. Polson, K. Eric Wommack, Jeffry J. Fuhrmann
    Viruses.2025; 17(11): 1474.     CrossRef
  • Host species and geography impact bee-associated RNA virus communities with evidence for isolation by distance in viral populations
    Chris R P Robinson, Adam G Dolezal, Irene L G Newton
    ISME Communications.2024;[Epub]     CrossRef
  • Metavirome mining from fjord sediments of Svalbard Archipelago
    Bhavya Kachiprath, Jayanath Gopi, Manomi Sarasan, Jayesh Puthumana, E. R. Chaithanya, Rosamma Philip
    Journal of Soils and Sediments.2024; 24(7): 2887.     CrossRef
  • In vitro characterization and genome sequencing of two novel lytic phages against Salmonella Infantis isolated from poultry feces
    Noemi Battistelli, Fabrizia Tittarelli, Fausto Ruffini, Luigi Gavazzi, Silvia Scattolini, Vicdalia Aniela Acciari, Teresa Romualdi, Valentina Curini, Simona Di Carlo, Nicola D’Alterio, Giacomo Migliorati, Francesco Pomilio, Giuseppe Aprea
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Genomic diversity and biogeographic distributions of a novel lineage of bacteriophages that infect marine OM43 bacteria
    Mingyu Yang, Sen Du, Zefeng Zhang, Qian Xia, He Liu, Fang Qin, Zuqing Wu, Hanqi Ying, Yin Wu, Jiabing Shao, Yanlin Zhao, Eva C. Sonnenschein
    Microbiology Spectrum.2023;[Epub]     CrossRef
  • Ubiquitous, B12-dependent virioplankton utilizing ribonucleotide-triphosphate reductase demonstrate interseasonal dynamics and associate with a diverse range of bacterial hosts in the pelagic ocean
    Ling-Yi Wu, Gonçalo J Piedade, Ryan M Moore, Amelia O Harrison, Ana M Martins, Kay D Bidle, Shawn W Polson, Eric G Sakowski, Jozef I Nissimov, Jacob T Dums, Barbra D Ferrell, K Eric Wommack
    ISME Communications.2023;[Epub]     CrossRef
  • Microbial Community Abundance and Metabolism Close to the Ice-Water Interface of the Blomstrandbreen Glacier (Kongsfjorden, Svalbard): A Sampling Survey Using an Unmanned Autonomous Vehicle
    Maria Papale, Gabriella Caruso, Giovanna Maimone, Rosabruna La Ferla, Angelina Lo Giudice, Alessandro Ciro Rappazzo, Alessandro Cosenza, Filippo Azzaro, Roberta Ferretti, Rodolfo Paranhos, Anderson Souza Cabral, Massimo Caccia, Angelo Odetti, Giuseppe Zap
    Water.2023; 15(3): 556.     CrossRef
  • Enhanced resolution of marine viruses with violet side scatter
    Yuan Zhao, Yanchu Zhao, Shan Zheng, Li Zhao, Wuchang Zhang, Tian Xiao, Gérald Grégori
    Cytometry Part A.2023; 103(3): 260.     CrossRef
  • Characterization of crAss-like phage isolates highlights Crassvirales genetic heterogeneity and worldwide distribution
    María Dolores Ramos-Barbero, Clara Gómez-Gómez, Laura Sala-Comorera, Lorena Rodríguez-Rubio, Sara Morales-Cortes, Elena Mendoza-Barberá, Gloria Vique, Daniel Toribio-Avedillo, Anicet R. Blanch, Elisenda Ballesté, Cristina Garcia-Aljaro, Maite Muniesa
    Nature Communications.2023;[Epub]     CrossRef
  • Viral Metagenomics Reveals Widely Diverse Viral Community of Freshwater Amazonian Lake
    Wylerson Guimarães Nogueira, Bruna Verônica Azevedo Gois, Kenny da Costa Pinheiro, Andressa de Oliveira Aragão, Ana Lídia Cavalcante Queiroz, Artur Luiz da Silva, Adriana Carneiro Folador, Rommel Thiago Jucá Ramos
    Frontiers in Public Health.2022;[Epub]     CrossRef
  • Isolation, characterization, and comparative genomic analysis of vB_PlaM_Pd22F, a new bacteriophage of the family Myoviridae
    Arif Bozdeveci, Merve Karali, Rahşan Akpinar, Şengül Alpay Karaoğlu
    Archives of Virology.2022; 167(5): 1269.     CrossRef
  • Picorna-Like Viruses of the Havel River, Germany
    Roland Zell, Marco Groth, Lukas Selinka, Hans-Christoph Selinka
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Strong selection and high mutation supply characterize experimental Chlorovirus evolution
    Cas Retel, Vienna Kowallik, Lutz Becks, Philine G D Feulner
    Virus Evolution.2022;[Epub]     CrossRef
  • Novel Viral DNA Polymerases From Metagenomes Suggest Genomic Sources of Strand-Displacing Biochemical Phenotypes
    Rachel A. Keown, Jacob T. Dums, Phillip J. Brumm, Joyanne MacDonald, David A. Mead, Barbra D. Ferrell, Ryan M. Moore, Amelia O. Harrison, Shawn W. Polson, K. Eric Wommack
    Frontiers in Microbiology.2022;[Epub]     CrossRef
  • Identification of Novel Viruses and Their Microbial Hosts from Soils with Long-Term Nitrogen Fertilization and Cover Cropping Management
    Ning Duan, Mark Radosevich, Jie Zhuang, Jennifer M. DeBruyn, Margaret Staton, Sean M. Schaeffer, Michaeline B. N. Albright
    mSystems.2022;[Epub]     CrossRef
  • Temporal Changes of Virus-Like Particle Abundance and Metagenomic Comparison of Viral Communities in Cropland and Prairie Soils
    Carolyn R. Cornell, Ya Zhang, Joy D. Van Nostrand, Pradeep Wagle, Xiangming Xiao, Jizhong Zhou, Angela D. Kent
    mSphere.2021;[Epub]     CrossRef
  • Virus Prevalence and Genetic Diversity Across a Wild Bumblebee Community
    David J. Pascall, Matthew C. Tinsley, Bethany L. Clark, Darren J. Obbard, Lena Wilfert
    Frontiers in Microbiology.2021;[Epub]     CrossRef
  • Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
    Akbar Adjie Pratama, Benjamin Bolduc, Ahmed A. Zayed, Zhi-Ping Zhong, Jiarong Guo, Dean R. Vik, Maria Consuelo Gazitúa, James M. Wainaina, Simon Roux, Matthew B. Sullivan
    PeerJ.2021; 9: e11447.     CrossRef
  • Viral abundance, community structure and correlation with bacterial community in soils of different cover plants
    Xiaolong Liang, Yusong Wang, Ying Zhang, Jie Zhuang, Mark Radosevich
    Applied Soil Ecology.2021; 168: 104138.     CrossRef
  • Extended Evaluation of Viral Diversity in Lake Baikal through Metagenomics
    Tatyana V. Butina, Yurij S. Bukin, Ivan S. Petrushin, Alexey E. Tupikin, Marsel R. Kabilov, Sergey I. Belikov
    Microorganisms.2021; 9(4): 760.     CrossRef
  • Occurrence and role of virioplankton in a tropical estuarine system
    Anderson S. Cabral, Mariana M. Lessa, Marianne P. Mello, Rafael M. Martins, Fernando H. Pulgati, Rodolfo Paranhos
    Hydrobiologia.2020; 847(19): 4125.     CrossRef
  • Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond
    Jessica Chopyk, Daniel J. Nasko, Sarah Allard, Anthony Bui, Mihai Pop, Emmanuel F. Mongodin, Amy R. Sapkota
    Environmental Microbiome.2020;[Epub]     CrossRef
  • Iroki: automatic customization and visualization of phylogenetic trees
    Ryan M. Moore, Amelia O. Harrison, Sean M. McAllister, Shawn W. Polson, K. Eric Wommack
    PeerJ.2020; 8: e8584.     CrossRef
  • Microbial Assemblages in Pressurized Antarctic Brine Pockets (Tarn Flat, Northern Victoria Land): A Hotspot of Biodiversity and Activity
    Maria Papale, Angelina Lo Giudice, Antonella Conte, Carmen Rizzo, Alessandro C. Rappazzo, Giovanna Maimone, Gabriella Caruso, Rosabruna La Ferla, Maurizio Azzaro, Concetta Gugliandolo, Rodolfo Paranhos, Anderson S. Cabral, Vincenzo Romano Spica, Mauro Gug
    Microorganisms.2019; 7(9): 333.     CrossRef
  • Engineering of a thermostable viral polymerase using metagenome-derived diversity for highly sensitive and specific RT-PCR
    Ryan C Heller, Suhman Chung, Katarzyna Crissy, Kyle Dumas, David Schuster, Thomas W Schoenfeld
    Nucleic Acids Research.2019; 47(7): 3619.     CrossRef
  • VFM: Identification of Bacteriophages From Metagenomic Bins and Contigs Based on Features Related to Gene and Genome Composition
    Qiaoliang Liu, Fu Liu, Jiaxue He, Miaolei Zhou, Tao Hou, Yun Liu
    IEEE Access.2019; 7: 177529.     CrossRef
  • The ‘Neglected’ Soil Virome – Potential Role and Impact
    Akbar Adjie Pratama, Jan Dirk van Elsas
    Trends in Microbiology.2018; 26(8): 649.     CrossRef
  • Viruses in soil: Nano-scale undead drivers of microbial life, biogeochemical turnover and ecosystem functions
    Yakov Kuzyakov, Kyle Mason-Jones
    Soil Biology and Biochemistry.2018; 127: 305.     CrossRef
  • Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses
    Marcos Parras-Moltó, Ana Rodríguez-Galet, Patricia Suárez-Rodríguez, Alberto López-Bueno
    Microbiome.2018;[Epub]     CrossRef
  • Size-dependent Catalysis of Chlorovirus Population Growth by A Messy Feeding Predator
    John P. DeLong, Zeina Al-Ameeli, Shelby Lyon, James L. Van Etten, David D. Dunigan
    Microbial Ecology.2018; 75(4): 847.     CrossRef
  • Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations
    Jessica Chopyk, Sarah Allard, Daniel J. Nasko, Anthony Bui, Emmanuel F. Mongodin, Amy R. Sapkota
    Frontiers in Microbiology.2018;[Epub]     CrossRef
  • Family A DNA Polymerase Phylogeny Uncovers Diversity and Replication Gene Organization in the Virioplankton
    Daniel J. Nasko, Jessica Chopyk, Eric G. Sakowski, Barbra D. Ferrell, Shawn W. Polson, K. Eric Wommack
    Frontiers in Microbiology.2018;[Epub]     CrossRef
  • Virioplankton dynamics are related to eutrophication levels in a tropical urbanized bay
    Anderson S. Cabral, Mariana M. Lessa, Pedro C. Junger, Fabiano L. Thompson, Rodolfo Paranhos, Jiang-Shiou Hwang
    PLOS ONE.2017; 12(3): e0174653.     CrossRef
  • Viruses in Soil Ecosystems: An Unknown Quantity Within an Unexplored Territory
    Kurt E. Williamson, Jeffry J. Fuhrmann, K. Eric Wommack, Mark Radosevich
    Annual Review of Virology.2017; 4(1): 201.     CrossRef
  • Virus–host interactions and their roles in coral reef health and disease
    Rebecca Vega Thurber, Jérôme P. Payet, Andrew R. Thurber, Adrienne M. S. Correa
    Nature Reviews Microbiology.2017; 15(4): 205.     CrossRef
  • Symbiosis: Viruses as Intimate Partners
    Marilyn J. Roossinck, Edelio R. Bazán
    Annual Review of Virology.2017; 4(1): 123.     CrossRef
  • Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches
    Stephen Hayes, Jennifer Mahony, Arjen Nauta, Douwe Van Sinderen
    Viruses.2017; 9(6): 127.     CrossRef
  • Transporting Ocean Viromes: Invasion of the Aquatic Biosphere
    Yiseul Kim, Tiong Gim Aw, Joan B. Rose, Senjie Lin
    PLOS ONE.2016; 11(4): e0152671.     CrossRef
  • Dynamics of Viral Abundance and Diversity in a Sphagnum-Dominated Peatland: Temporal Fluctuations Prevail Over Habitat
    Flore Ballaud, Alexis Dufresne, André-Jean Francez, Jonathan Colombet, Télesphore Sime-Ngando, Achim Quaiser
    Frontiers in Microbiology.2016;[Epub]     CrossRef
  • Assessing viral taxonomic composition in benthic marine ecosystems: reliability and efficiency of different bioinformatic tools for viral metagenomic analyses
    M. Tangherlini, A. Dell’Anno, L. Zeigler Allen, G. Riccioni, C. Corinaldesi
    Scientific Reports.2016;[Epub]     CrossRef
  • Nothing in Evolution Makes Sense Except in the Light of Genomics: Read–Write Genome Evolution as an Active Biological Process
    James Shapiro
    Biology.2016; 5(2): 27.     CrossRef
  • Complete genome sequence of bacteriophage P2559Y, a marine phage that infects Croceibacter atlanticus HTCC2559
    Ilnam Kang, Dongmin Kang, Jang-Cheon Cho
    Marine Genomics.2016; 29: 35.     CrossRef
  • The Ferrojan Horse Hypothesis: Iron-Virus Interactions in the Ocean
    Chelsea Bonnain, Mya Breitbart, Kristen N. Buck
    Frontiers in Marine Science.2016;[Epub]     CrossRef
  • Complete genome sequence of bacteriophage P26218 infecting Rhodoferax sp. strain IMCC26218
    Kira Moon, Ilnam Kang, Suhyun Kim, Jang-Cheon Cho, Sang-Jong Kim
    Standards in Genomic Sciences.2015;[Epub]     CrossRef
  • Complete genome sequence of bacteriophage P8625, the first lytic phage that infects Verrucomicrobia
    Ahyoung Choi, Ilnam Kang, Seung-Jo Yang, Jang-Cheon Cho
    Standards in Genomic Sciences.2015;[Epub]     CrossRef
  • Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities
    Kemal Sanli, Johan Bengtsson-Palme, R. Henrik Nilsson, Erik Kristiansson, Magnus Alm Rosenblad, Hans Blanck, Karl M. Eriksson
    Frontiers in Microbiology.2015;[Epub]     CrossRef
Research Support, Non-U.S. Gov'ts
Proteomic and Functional Analyses of a Novel Porin-like Protein in Xanthomonas oryzae pv. oryzae
Hye-Jee Park , Sang-Won Lee , Sang-Wook Han
J. Microbiol. 2014;52(12):1030-1035.   Published online November 29, 2014
DOI: https://doi.org/10.1007/s12275-014-4442-0
  • 363 View
  • 0 Download
  • 13 Crossref
AbstractAbstract PDF
Proteomic analysis is a useful technique for postulating and elucidating protein functions. In the present work, a shotgun proteomic analysis was used to identify functions of the PXO_03968 gene (previously known as the ax21) from Xanthomonas oryzae pv. oryzae (Xoo), a causal agent for bacterial blight disease in rice. Structural prediction performed on the protein sequence encoded by PXO_03968 reveals that it encodes a putative porin-like protein, possessing a β-barrel domain with 10 β-strands and a signal peptide at the Nterminus. We renamed the gene as an omp1X (outer membrane protein 1 in Xoo), generated its knock out mutant (XooΔomp1X), and compared the protein expression level in the mutant to that in the wild type. A total of 106 proteins displayed more than 1.5-fold difference in expression between the mutant and the wild type strains. COG analysis revealed that these proteins are involved in cell motility as well as signal transduction. In addition, phenotypic analysis demonstrated that motility and biofilm formation in XooΔomp1X are lower than the wild type. These results provide new insights into the functions of outer membrane proteins in Gram-negative bacteria.

Citations

Citations to this article as recorded by  
  • Stenotrophomonas maltophilia virulence: a current view
    Vladimir Mikhailovich, Rustam Heydarov, Danila Zimenkov, Igor Chebotar
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Molecular-genetic portrait of virulence of Stenotrophomonas maltophilia
    Vladimir M. Mikhailovich, Rustam N. Geydarov, Julia A. Bocharova, Igor V. Chebotar
    Journal of microbiology, epidemiology and immunobiology.2023; 100(5): 380.     CrossRef
  • p‐Aminobenzoic acid inhibits the growth of soybean pathogen Xanthomonas axonopodis pv. glycines by altering outer membrane integrity
    Yong‐Hui Jiang, Ting Liu, Xin‐Chi Shi, Daniela D Herrera‐Balandrano, Mei‐Ting Xu, Su‐Yan Wang, Pedro Laborda
    Pest Management Science.2023; 79(10): 4083.     CrossRef
  • Expression and function of clpS and clpA in Xanthomonas campestris pv. campestris
    Hsueh-Hsia Lo, Hsiao-Ching Chang, Chao-Tsai Liao, Yi-Min Hsiao
    Antonie van Leeuwenhoek.2022; 115(5): 589.     CrossRef
  • Outer Membrane Vesicles: Biogenesis, Functions, and Issues
    Rokas Juodeikis, Simon R. Carding
    Microbiology and Molecular Biology Reviews.2022;[Epub]     CrossRef
  • Recombinant Ax21 protein is a promising subunit vaccine candidate against Stenotrophomonas maltophilia in a murine infection model
    Amal Tarek Sarhan, Mohammed Bahey-El-Din, Taha Ibrahim Zaghloul
    Vaccine.2021; 39(32): 4471.     CrossRef
  • Deciphering the functions of the outer membrane porin OprBXo involved in virulence, motility, exopolysaccharide production, biofilm formation and stress tolerance in Xanthomonas oryzae pv. oryzae
    Nahee Bae, Hye‐Jee Park, Hanbi Park, Minyoung Kim, Sang‐Wook Han
    Molecular Plant Pathology.2018; 19(12): 2527.     CrossRef
  • The Ax21 protein influences virulence and biofilm formation in Stenotrophomonas maltophilia
    Shi-qi An, Ji-liang Tang
    Archives of Microbiology.2018; 200(1): 183.     CrossRef
  • Lsp family proteins regulate antibiotic biosynthesis in Lysobacter enzymogenes OH11
    Ruping Wang, Huiyong Xu, Yangyang Zhao, Juan Zhang, Gary Y Yuen, Guoliang Qian, Fengquan Liu
    AMB Express.2017;[Epub]     CrossRef
  • Systems and synthetic biology perspective of the versatile plant-pathogenic and polysaccharide-producing bacterium Xanthomonas campestris
    Sarah Schatschneider, Jessica Schneider, Jochen Blom, Fabien Létisse, Karsten Niehaus, Alexander Goesmann, Frank-Jörg Vorhölter
    Microbiology.2017; 163(8): 1117.     CrossRef
  • Functional and Proteomic Analyses Reveal That ScpBXv Is Involved in Bacterial Growth, Virulence, and Biofilm Formation in Xanthomonas campestris pv. vesicatoria
    Hye-Jee Park, Sang-Wook Han
    The Plant Pathology Journal.2017; 33(6): 602.     CrossRef
  • Deciphering the Role of Tyrosine Sulfation in Xanthomonas oryzae pv. oryzae Using Shotgun Proteomic Analysis
    Hye-Jee Park, Chang-Jin Park, Nahee Bae, Sang-Wook Han
    The Plant Pathology Journal.2016; 32(3): 266.     CrossRef
  • The effect of imipenem and diffusible signaling factors on the secretion of outer membrane vesicles and associated Ax21 proteins in Stenotrophomonas maltophilia
    Simon Devos, Laurence Van Oudenhove, Stephan Stremersch, Wouter Van Putte, Riet De Rycke, Gonzalez Van Driessche, Jolien Vitse, Koen Raemdonck, Bart Devreese
    Frontiers in Microbiology.2015;[Epub]     CrossRef
Deodorization of Pig Slurry and Characterization of Bacterial Diversity Using 16S rDNA Sequence Analysis
Ok-Hwa Hwang , Sebastian Raveendar , Young-Ju Kim , Ji-Hun Kim , Tae-Hun Kim , Dong-Yoon Choi , Che Ok Jeon , Sung-Back Cho , Kyung-Tai Lee
J. Microbiol. 2014;52(11):918-929.   Published online October 31, 2014
DOI: https://doi.org/10.1007/s12275-014-4251-5
  • 336 View
  • 0 Download
  • 8 Crossref
AbstractAbstract PDF
The concentration of major odor-causing compounds including phenols, indoles, short-chain fatty acids (SCFAs) and branched chain fatty acids (BCFAs) in response to the addition of powdered horse radish (PHR) and spent mushroom compost (SMC) was compared with control nontreated slurry (CNS) samples. A total of 97,465 rDNAs sequence reads were generated from three different samples (CNS, n = 2; PHR, n = 3; SMC, n = 3) using bar-coded pyrosequencing. The number of operational taxonomic units (OTUs) was lower in the PHR slurry compared with the other samples. A total of 11 phyla were observed in the slurry samples, while the phylogenetic analysis revealed that the slurry microbiome predominantly comprised members of the Bacteroidetes, Firmicutes, and Proteobacteria phyla. The rarefaction analysis showed the bacterial species richness varied among the treated samples. Overall, at the OTU level, 2,558 individual genera were classified, 276 genera were found among the three samples, and 1,832 additional genera were identified in the individual samples. A principal component analysis revealed the differences in microbial communities among the CNS, PHR, and SMC pig slurries. Correlation of the bacterial community structure with the Kyoto Encyclopedia of Genes and Genomes (KEGG) predicted pathways showed that the treatments altered the metabolic capabilities of the slurry microbiota. Overall, these results demonstrated that the PHR and SMC treatments significantly reduced the malodor compounds in pig slurry (P < 0.05).

Citations

Citations to this article as recorded by  
  • Impact of Bacillus subtilis on manure solids, odor, and microbiome
    Okhwa Hwang, Yeo-Myeong Yun, Steven Trabue
    Journal of Environmental Management.2023; 333: 117390.     CrossRef
  • Isolation and identification of proteolytic bacteria from pig sludge and protease activity determination
    S Hamdani, N Asstiyani, D Astriany, M Singgih, S Ibrahim
    IOP Conference Series: Earth and Environmental Science.2019; 230: 012095.     CrossRef
  • The gut bacteria across life stages in the synanthropic fly Chrysomya megacephala
    Xiaoyun Wang, Qiao Gao, Wanqiang Wang, Xiaoping Wang, Chaoliang Lei, Fen Zhu
    BMC Microbiology.2018;[Epub]     CrossRef
  • Bacterial community composition and diversity uncovered in experimental sludge treatment reed bed systems with different swine slurry hydraulic loadings
    Paula Arroyo, Luis E. Sáenz de Miera, Jorge Falagán, Gemma Ansola
    Ecological Engineering.2018; 123: 175.     CrossRef
  • Effect of pH on soil bacterial diversity
    Sun-Ja Cho, Mi-Hee Kim, Young-Ok Lee
    Journal of Ecology and Environment.2016;[Epub]     CrossRef
  • Indole: a signaling molecule or a mere metabolic byproduct that alters bacterial physiology at a high concentration?
    Jisun Kim, Woojun Park
    Journal of Microbiology.2015; 53(7): 421.     CrossRef
  • Application of Next Generation Sequencing to Investigate Microbiome in the Livestock Sector
    Minseok Kim, Youlchang Baek, Young Kyoon Oh
    Journal of Animal Environmental Science.2015; 21(3): 93.     CrossRef
  • Survival of free-living Acholeplasma in aerated pig manure slurry revealed by 13C-labeled bacterial biomass probing
    Dai Hanajima, Tomo Aoyagi, Tomoyuki Hori
    Frontiers in Microbiology.2015;[Epub]     CrossRef
A Functional and Phylogenetic Comparison of Quorum Sensing Related Genes in Brucella melitensis 16M
Aniel Jessica Leticia Brambila-Tapia , Ernesto Pérez-Rueda
J. Microbiol. 2014;52(8):709-715.   Published online July 4, 2014
DOI: https://doi.org/10.1007/s12275-014-3570-x
  • 381 View
  • 0 Download
  • 6 Crossref
AbstractAbstract PDF
A quorum-sensing (QS) system is involved in Brucella melitensis survival inside the host cell. Two transcriptional regulators identified in B. melitensis, BlxR and VjbR, regulate the expression of virB, an operon required for bacterial intracellular persistence. In this work, 628 genes affected by VjbR and 124 by BlxR were analyzed to gain insights into their functional and taxonomical distributions among the Bacteria and Archaea cellular domains. In this regard, the Cluster of Orthologous Groups (COG) genes and orthologous genes in 789 nonredundant bacterial and archaeal genomes were obtained and compared against a group of randomly selected genes. From these analyses, we found 71 coaffected genes between VjbR and BlxR. In the COG comparison, VjbR activated genes associated with intracellular trafficking, secretion and vesicular transport and defense mechanisms, while BlxR affected genes related to energy production and conversion (with an equal effect) and translation, ribosomal structure and biogenesis, posttranslational modifications and carbohydrate and amino acid metabolism (with a negative effect). When the taxonomical distribution of orthologous genes was evaluated, the VjbR- and BlxRrelated genes presented more orthologous genes in Crenarchaeota (Archaea), Firmicutes, and Tenericutes and fewer genes in Proteobacteria than expected by chance. These findings suggest that QS system exert a fine-tuning modulation of gene expression, by which VjbR activates genes related to infection persistence and defense, while BlxR represses general bacterial metabolism for intracellular adaptations. Finally, these affected genes present a degree of presence among Bacteria and Archaea genomes that is different from that expected by chance.

Citations

Citations to this article as recorded by  
  • Phylogeny as the basis for the sub-fields of biosemiotics
    Charles H. Lineweaver
    Semiotica.2025; 2025(264): 171.     CrossRef
  • Brucella mediates autophagy, inflammation, and apoptosis to escape host killing
    Yaqiong Qin, Gengxu Zhou, Fengyuan Jiao, Chuan Cheng, Chi Meng, Lingjie Wang, Shengping Wu, Cailiang Fan, Jixiang Li, Bo Zhou, Yuefeng Chu, Hanwei Jiao
    Frontiers in Cellular and Infection Microbiology.2024;[Epub]     CrossRef
  • The VirB System Plays a Crucial Role in Brucella Intracellular Infection
    Xue Xiong, Bowen Li, Zhixiong Zhou, Guojing Gu, Mengjuan Li, Jun Liu, Hanwei Jiao
    International Journal of Molecular Sciences.2021; 22(24): 13637.     CrossRef
  • Uncovering the Hidden Credentials ofBrucellaVirulence
    R. Martin Roop, Ian S. Barton, Dariel Hopersberger, Daniel W. Martin
    Microbiology and Molecular Biology Reviews.2021;[Epub]     CrossRef
  • Rich Repertoire of Quorum Sensing Protein Coding Sequences in CPR and DPANN Associated with Interspecies and Interkingdom Communication
    Charles Bernard, Romain Lannes, Yanyan Li, Éric Bapteste, Philippe Lopez, Robert G. Beiko
    mSystems.2020;[Epub]     CrossRef
  • BASI74, a Virulence-Related sRNA in Brucella abortus
    Hao Dong, Xiaowei Peng, Yufu Liu, Tonglei Wu, Xiaolei Wang, Yanyan De, Tao Han, Lin Yuan, Jiabo Ding, Chuanbin Wang, Qingmin Wu
    Frontiers in Microbiology.2018;[Epub]     CrossRef
Profiling of the Bacteria Responsible for Pyogenic Liver Abscess by 16S rRNA Gene Pyrosequencing
Yun Gyu Song , Sang Gun Shim , Kwang Min Kim , Dong-Hae Lee , Dae-Soo Kim , Sang-Haeng Choi , Jae-Young Song , Hyung-Lyun Kang , Seung-Chul Baik , Woo-Kon Lee , Myung-Je Cho , Kwang-Ho Rhee
J. Microbiol. 2014;52(6):504-509.   Published online May 29, 2014
DOI: https://doi.org/10.1007/s12275-014-4241-7
  • 429 View
  • 0 Download
  • 25 Crossref
AbstractAbstract PDF
Pyogenic liver abscess (PLA) is a severe disease with considerable mortality and is often polymicrobial. Understanding the pathogens that cause PLA is the basis for PLA treatment. Here, we profiled the bacterial composition in PLA fluid by pyrosequencing the 16S ribosomal RNA (rRNA) gene based on next-generation sequencing (NGS) technology to identify etiological agents of PLA and to provide information of their 16S rRNA sequences for application to DNA-based techniques in the hospital. Twenty patients with PLA who underwent percutaneous catheter drainage, abscess culture, and blood culture for isolates were included. Genomic DNAs from abscess fluids were subjected to polymerase chain reaction and pyrosequencing of the 16S rRNA gene with a 454 GS Junior System. The abscess and blood cultures were positive in nine (45%) and four (20%) patients, respectively. Pyrosequencing of 16S rRNA gene showed that 90% of the PLA fluid samples contained single or multiple genera of known bacteria such as Klebsiella, Fusobacterium, Streptococcus, Bacteroides, Prevotella, Peptostreptococcus, unassigned Enterobacteriaceae, and Dialister. Klebsiella was predominantly found in the PLA fluid samples. All samples that carried unassigned bacteria had 26.8% reads on average. We demonstrated that the occurrence of PLA was associated with eight known bacterial genera as well as unassigned bacteria and that 16S rRNA gene sequencing was more useful than conventional culture methods for accurate identification of bacterial pathogens from PLA.

Citations

Citations to this article as recorded by  
  • Massive Sequencing of V3-V4 Hypervariable Region in Pyogenic Liver Abscesses Reveals the Presence of Unusual Bacteria Not Detected by Classical Culture Methods
    Verónica Fernández-Sánchez, Estibeyesbo Said Plascencia-Nieto, Mónica Alethia Cureño-Díaz, Emilio Mariano Durán-Manuel, Aida Verónica Rodríguez-Tovar, Claudia Camelia Calzada-Mendoza, Clemente Cruz-Cruz, Miguel Ángel Loyola-Cruz, María Elizbeth Álvarez-Sá
    Microorganisms.2025; 13(1): 131.     CrossRef
  • Pyogenic liver abscess and sepsis caused by mixed anaerobic bacteria in an immunocompetent adult: a case report
    Ziwen Fan, Mu Mei, Cen Chen
    Frontiers in Medicine.2025;[Epub]     CrossRef
  • Comparative microbiome analysis of contracted breast capsules: a cross-sectional study
    Tae Hyun Park, Min-Ji Kim, Yeonkyeong Lee, Joon Seok Lee, Jeeyeon Lee, Ho Yong Park, Jae-Ho Shin, Jung Dug Yang
    BMC Microbiology.2025;[Epub]     CrossRef
  • Alterations of Gut Microbiota in Pyogenic Liver Abscess Patients with and without Type 2 Diabetes Mellitus
    Shanshan Liu, Xiaomeng Ge, Xizhan Xu, Kang Zhang, Xinxin Lu
    Infection and Drug Resistance.2024; Volume 17: 2149.     CrossRef
  • Absceso hepático
    G. Rossi, M. Ronot, V. Zarrouk, A. Lefort
    EMC - Tratado de Medicina.2024; 28(3): 1.     CrossRef
  • Comprehensive analysis of the microbiome and metabolome in pus from pyogenic liver abscess patients with and without diabetes mellitus
    Yawen Guo, Hairui Wang, Zhaoyu Liu, Zhihui Chang
    Frontiers in Microbiology.2023;[Epub]     CrossRef
  • Metagenome Analysis of the Bacterial Characteristics in Invasive Klebsiella Pneumoniae Liver Abscesses
    Zhijie Zhang, Hairui Wang, Yawen Guo, Zhaoyu Liu, Zhihui Chang
    Frontiers in Cellular and Infection Microbiology.2022;[Epub]     CrossRef
  • Involvement of Fusobacterium nucleatum in malignancies except for colorectal cancer: A literature review
    Zhixing He, Wei Tian, Qichun Wei, Jing Xu
    Frontiers in Immunology.2022;[Epub]     CrossRef
  • Liver abscesses in the Western pediatric population
    L Grossar, I Hoffman, E Sokal, X Stéphenne, P Witters
    Acta Gastro Enterologica Belgica.2022; 85(3): 439.     CrossRef
  • Characterization of abscesses from liver, pancreas and kidney using deep sequencing of the 16S rRNA gene
    Joanna Małgorzata Bivand, Randi Monsen Nygaard, Øyvind Kommedal
    Diagnostic Microbiology and Infectious Disease.2021; 99(3): 115277.     CrossRef
  • Brevundimonas diminuta coinfection as source of pyogenic liver abscess
    Jacob Burch, Shilpa Tatineni, Ikponmwosa Enofe, Heather Laird-Fick
    BMJ Case Reports.2021; 14(5): e236235.     CrossRef
  • Real‐time PCR versus MALDI‐TOF MS and culture‐based techniques for diagnosis of bloodstream and pyogenic infections in humans and animals
    N.K. Abd El‐Aziz, A.A Gharib, E.A.A. Mohamed, A.H. Hussein
    Journal of Applied Microbiology.2021; 130(5): 1630.     CrossRef
  • Neonatal Exposure to BPA, BDE-99, and PCB Produces Persistent Changes in Hepatic Transcriptome Associated With Gut Dysbiosis in Adult Mouse Livers
    Joe Jongpyo Lim, Moumita Dutta, Joseph L Dempsey, Hans-Joachim Lehmler, James MacDonald, Theo Bammler, Cheryl Walker, Terrance J Kavanagh, Haiwei Gu, Sridhar Mani, Julia Yue Cui
    Toxicological Sciences.2021; 184(1): 83.     CrossRef
  • Impact of Qualitative and Quantitative Biliary Contamination Status on the Incidence of Postoperative Infection Complications in Patients Undergoing Pancreatoduodenectomy
    Masaya Suenaga, Yukihiro Yokoyama, Tsutomu Fujii, Suguru Yamada, Junpei Yamaguchi, Masamichi Hayashi, Takashi Asahara, Masato Nagino, Yasuhiro Kodera
    Annals of Surgical Oncology.2021; 28(1): 560.     CrossRef
  • Glycan cross-feeding supports mutualism between Fusobacterium and the vaginal microbiota
    Kavita Agarwal, Lloyd S. Robinson, Somya Aggarwal, Lynne R. Foster, Ariel Hernandez-Leyva, Hueylie Lin, Brett A. Tortelli, Valerie P. O’Brien, Liza Miller, Andrew L. Kau, Hilary Reno, Nicole M. Gilbert, Warren G. Lewis, Amanda L. Lewis, Ken Cadwell
    PLOS Biology.2020; 18(8): e3000788.     CrossRef
  • Clinical characteristics and treatment outcomes in a cohort of patients with pyogenic and amoebic liver abscess
    Lorna Neill, Frances Edwards, Simon M. Collin, David Harrington, Dominic Wakerley, Guduru Gopal Rao, Alastair C. McGregor
    BMC Infectious Diseases.2019;[Epub]     CrossRef
  • Profiling of the Causative Bacteria in Infected Lymphocysts after Lymphadenectomy for Gynecologic Cancer by Pyrosequencing the 16S Ribosomal RNA Gene Using Next-Generation Sequencing Technology
    Yuya Nogami, Kouji Banno, Masataka Adachi, Haruko Kunitomi, Yusuke Kobayashi, Eiichiro Tominaga, Daisuke Aoki
    Infectious Diseases in Obstetrics and Gynecology.2019; 2019: 1.     CrossRef
  • PCR Characterization of Microbiota on Contracted and Non-Contracted Breast Capsules
    Yara Bachour, Linda Poort, Stephan P. Verweij, Gijs van Selms, Hay A. H. Winters, Marco J. P. F. Ritt, Frank B. Niessen, Andries E. Budding
    Aesthetic Plastic Surgery.2019; 43(4): 918.     CrossRef
  • Detection of bacterial DNA from central venous catheter removed from patients by next generation sequencing: a preliminary clinical study
    Ken-ichi Okuda, Yutaka Yoshii, Satomi Yamada, Akio Chiba, Ippei Hironaka, Seiji Hori, Katsuhiko Yanaga, Yoshimitsu Mizunoe
    Annals of Clinical Microbiology and Antimicrobials.2018;[Epub]     CrossRef
  • Rapid Communication: 16S ribosomal ribonucleic acid characterization of liver abscesses in feedlot cattle from three states in the United States1
    M. D. Weinroth, C. R. Carlson, J. N. Martin, J. L. Metcalf, P. S. Morley, K. E. Belk
    Journal of Animal Science.2017; 95(10): 4520.     CrossRef
  • Fusobacterium nucleatum in gastroenterological cancer: Evaluation of measurement methods using quantitative polymerase chain reaction and a literature review
    Kensuke Yamamura, Yoshifumi Baba, Keisuke Miyake, Kenichi Nakamura, Hironobu Shigaki, Kosuke Mima, Junji Kurashige, Takatsugu Ishimoto, Masaaki Iwatsuki, Yasuo Sakamoto, Yoichi Yamashita, Naoya Yoshida, Masayuki Watanabe, Hideo Baba
    Oncology Letters.2017;[Epub]     CrossRef
  • Fusobacterial liver abscess: a case report and review of the literature
    Dilip Jayasimhan, Linus Wu, Paul Huggan
    BMC Infectious Diseases.2017;[Epub]     CrossRef
  • Automated Broad-Range Molecular Detection of Bacteria in Clinical Samples
    Andries E. Budding, Martine Hoogewerf, Christina M. J. E. Vandenbroucke-Grauls, Paul H. M. Savelkoul, N. A. Ledeboer
    Journal of Clinical Microbiology.2016; 54(4): 934.     CrossRef
  • Fusobacterium nucleatum infections: clinical spectrum and bacteriological features of 78 cases
    E. Denes, O. Barraud
    Infection.2016; 44(4): 475.     CrossRef
  • Pyrosequencing-based analysis of fecal microbial communities in three purebred pig lines
    Edward Alain B. Pajarillo, Jong Pyo Chae, Marilen P. Balolong, Hyeun Bum Kim, Kang-Seok Seo, Dae-Kyung Kang
    Journal of Microbiology.2014; 52(8): 646.     CrossRef
Identifying Airborne Fungi in Seoul, Korea Using Metagenomics
Seung-Yoon Oh , Jonathan J. Fong , Myung Soo Park , Limseok Chang , Young Woon Lim
J. Microbiol. 2014;52(6):465-472.   Published online April 11, 2014
DOI: https://doi.org/10.1007/s12275-014-3550-1
  • 427 View
  • 0 Download
  • 40 Crossref
AbstractAbstract PDF
Fungal spores are widespread and common in the atmosphere. In this study, we use a metagenomic approach to study the fungal diversity in six total air samples collected from April to May 2012 in Seoul, Korea. This springtime period is important in Korea because of the peak in fungal spore concentration and Asian dust storms, although the year of this study (2012) was unique in that were no major Asian dust events. Clustering sequences for operational taxonomic unit (OTU) identification recovered 1,266 unique OTUs in the combined dataset, with between 223-396 OTUs present in individual samples. OTUs from three fungal phyla were identified. For Ascomycota, Davidiella (anamorph: Cladosporium) was the most common genus in all samples, often accounting for more than 50% of all sequences in a sample. Other common Ascomycota genera identified were Alternaria, Didymella, Khuskia, Geosmitha, Penicillium, and Aspergillus. While several Basidiomycota genera were observed, Chytridiomycota OTUs were only present in one sample. Consistency was observed within sampling days, but there was a large shift in species composition from Ascomycota dominant to Basidiomycota dominant in the middle of the sampling period. This marked change may have been caused by meteorological events. A potential set of 40 allergyinducing genera were identified, accounting for a large proportion of the diversity present (22.5–77.2%). Our study identifies high fungal diversity and potentially high levels of fungal allergens in springtime air of Korea, and provides a good baseline for future comparisons with Asian dust storms.

Citations

Citations to this article as recorded by  
  • Aspergillus flavus with Mycovirus as an Etiologic Factor for Acute Leukemias in Susceptible Individuals: Evidence and Discussion
    Cameron K. Tebbi, Eva Sahakian, Bijal Shah, Jiyu Yan, Melanie Mediavilla-Varela, Saumil Patel
    Biomedicines.2025; 13(2): 488.     CrossRef
  • Comparison of airborne bacterial communities in PM2.5 between a dry-season haze period and a wet-season non-haze period in thailand
    Nopadol Precha, Kittipong Chaisiri, Suwalee Worakhunpiset, Yanin Limpanont, Naomichi Yamamoto, Wantanasak Suksong, Wissanupong Kliengchuay, Kraichat Tantrakarnapa
    Scientific Reports.2025;[Epub]     CrossRef
  • Airborne DNA: State of the art – Established methods and missing pieces in the molecular genetic detection of airborne microorganisms, viruses and plant particles
    C.-E. Pogner, C. Antunes, G.P. Apangu, N. Bruffaerts, S. Celenk, A. Cristofori, N. González Roldán, A. Grinn-Gofroń, B. Lara, M. Lika, D. Magyar, M. Martinez-Bracero, L. Muggia, B. Muyshondt, D. O'Connor, A. Pallavicini, M.A. Marchã Penha, R. Pérez-Badia,
    Science of The Total Environment.2024; 957: 177439.     CrossRef
  • Synoptic Variation Drives Genetic Diversity and Transmission Mode of Airborne DNA Viruses in Urban Space
    Aihua Deng, Junyue Wang, Lai Li, Ruilin Shi, Xuemin Li, Tingyi Wen
    Advanced Science.2024;[Epub]     CrossRef
  • Fungal Catastrophe of a Specimen Room: Just One Week is Enough to Eradicate Traces of Thousands of Animals
    Ji Seon Kim, Yoonhee Cho, Chang Wan Seo, Ki Hyeong Park, Shinnam Yoo, Jun Won Lee, Sung Hyun Kim, Wonjun Lee, Young Woon Lim
    Journal of Microbiology.2023; 61(2): 189.     CrossRef
  • Seasonal variability of airborne mold concentrations as related to dust in a coastal urban area in the Eastern Mediterranean
    Elif Palaz, Sibel Menteşe, Abdurrahman Bayram, Melik Kara, Tolga Elbir
    Environmental Science and Pollution Research.2023; 31(28): 40717.     CrossRef
  • A Metagenomic Survey of Wood Decay Fungi in the Urban Trees of Singapore
    Yan Hong, Jhing Yein Tan, Huiyu Xue, Mei Lun Chow, Mohamed Ali, Arthur Ng, Abigail Leong, Jeb Yeo, Shao Ming Koh, Megan Shi Ying Tang, Yan Yi Lee, Amy Mei Fun Choong, Serena Mei Lyn Lee, Riccardo Delli Ponti, Perry M. Chan, Daryl Lee, Jia Yih Wong, Marek
    Journal of Fungi.2023; 9(4): 460.     CrossRef
  • Optimization of DNA Extraction and PCR Conditions for Fungal Metagenome Analysis of Atmospheric Particulate Matter
    Sookyung Kang, Kyung-Suk Cho
    Microbiology and Biotechnology Letters.2023; 51(1): 99.     CrossRef
  • Annual Change in Fungal Concentrations and Allergic Sensitization Rates to Alternaria and Cladosporium in Korea During the Period 1998–2022
    Young-Jin Choi, Kyung-Suk Lee, Jin Hyeok Jeong, Kyunghoon Kim, Seung Yang, Jae Yoon Na, Jae Kyoon Hwang, Yunsoo Choe, Kyu Rang Kim, Mae-Ja Han, Yung-Seop Lee, Jae-Won Oh
    Allergy, Asthma & Immunology Research.2023; 15(6): 825.     CrossRef
  • The relationships between health risk and special weather conditions according to fungal community characteristics
    Ting Zhang, Yao Wang, Jianhua Qi, Dahai Zhang, Xianguo Li
    Aerobiologia.2022; 38(2): 263.     CrossRef
  • Co-exposure of peptidoglycan and heat-inactivated Asian sand dust exacerbates ovalbumin-induced allergic airway inflammation in mice
    Kaori Sadakane, Takamichi Ichinose, Teruya Maki, Masataka Nishikawa
    Inhalation Toxicology.2022; 34(9-10): 231.     CrossRef
  • The decay of airborne bacteria and fungi in a constant temperature and humidity test chamber
    Caihong Xu, Hui Chen, Zhe Liu, Guodong Sui, Dan Li, Haidong Kan, Zhuohui Zhao, Wei Hu, Jianmin Chen
    Environment International.2021; 157: 106816.     CrossRef
  • Efficiency of bioaerosol samplers: a comparison study
    Esra Mescioglu, Adina Paytan, Bailey W. Mitchell, Dale W. Griffin
    Aerobiologia.2021; 37(3): 447.     CrossRef
  • Fungal Community Analyses of Endophytic Fungi from Two Oak Species,Quercus mongolicaandQuercus serrata, in Korea
    Manh Ha Nguyen, Keum Chul Shin, Jong Kyu Lee
    Mycobiology.2021; 49(4): 385.     CrossRef
  • The Response of Airborne Mycobiome to Dust Storms in the Eastern Mediterranean
    Xuefeng Peng, Daniela Gat, Adina Paytan, Yinon Rudich
    Journal of Fungi.2021; 7(10): 802.     CrossRef
  • Influence of rainfall on fungal aerobiota in the urban atmosphere over Tianjin, China: A case study
    Mutong Niu, Wei Hu, Borong Cheng, Libin Wu, Lujie Ren, Junjun Deng, Fangxia Shen, Pingqing Fu
    Atmospheric Environment: X.2021; 12: 100137.     CrossRef
  • Comparison of five membrane filters to collect bioaerosols for airborne microbiome analysis
    S.‐Y. Jeong, T.G. Kim
    Journal of Applied Microbiology.2021; 131(2): 780.     CrossRef
  • Metagenomic characterisation of bioaerosols during the dry season in Mexico City
    M. C. Calderón-Ezquerro, N. Serrano-Silva, C. Brunner-Mendoza
    Aerobiologia.2020; 36(3): 493.     CrossRef
  • An aero mycological analysis of Mucormycetes in indoor and outdoor environments of northern India
    Hariprasath Prakash, Shreya Singh, Shivaprakash Mandya Rudramurthy, Pankaj Singh, Neha Mehta, Dipika Shaw, Anup Kumar Ghosh
    Medical Mycology.2020; 58(1): 118.     CrossRef
  • Fungal communities decline with urbanization—more in air than in soil
    Nerea Abrego, Brittni Crosier, Panu Somervuo, Natalia Ivanova, Arusyak Abrahamyan, Amir Abdi, Karoliina Hämäläinen, Kaisa Junninen, Minna Maunula, Jenna Purhonen, Otso Ovaskainen
    The ISME Journal.2020; 14(11): 2806.     CrossRef
  • Relevance of plant and fungal DNA metabarcoding in aerobiology
    Elisa Banchi, Alberto Pallavicini, Lucia Muggia
    Aerobiologia.2020; 36(1): 9.     CrossRef
  • Metagenomic investigation of African dust events in the Caribbean
    Samantha Marie Waters, S K Purdue, R Armstrong, Y Detrés
    FEMS Microbiology Letters.2020;[Epub]     CrossRef
  • Monitoring and Surveillance of Aerial Mycobiota of Rice Paddy through DNA Metabarcoding and qPCR
    Sara Franco Ortega, Ilario Ferrocino, Ian Adams, Simone Silvestri, Davide Spadaro, Maria Lodovica Gullino, Neil Boonham
    Journal of Fungi.2020; 6(4): 372.     CrossRef
  • Biochemical Characteristics and Allergenic Activity of Common Fungus Allergens
    Lisha Li, Kai Guan, Song Guo Zheng
    Current Protein & Peptide Science.2020; 21(2): 170.     CrossRef
  • Temporal patterns of variability for prokaryotic and eukaryotic diversity in the urban air of Madrid (Spain)
    Andrés Núñez, Guillermo Amo de Paz, Alberto Rastrojo, Zuzana Ferencova, A. Montserrat Gutiérrez-Bustillo, Antonio Alcamí, Diego A. Moreno, Raúl Guantes
    Atmospheric Environment.2019; 217: 116972.     CrossRef
  • Effects of co‐exposure of lipopolysaccharide and β‐glucan (Zymosan A) in exacerbating murine allergic asthma associated with Asian sand dust
    Kaori Sadakane, Takamichi Ichinose, Masataka Nishikawa
    Journal of Applied Toxicology.2019; 39(4): 672.     CrossRef
  • A review on the applications and recent advances in environmental DNA (eDNA) metagenomics
    Deviram Garlapati, B. Charankumar, K. Ramu, P. Madeswaran, M. V. Ramana Murthy
    Reviews in Environmental Science and Bio/Technology.2019; 18(3): 389.     CrossRef
  • DNA metabarcoding uncovers fungal diversity of mixed airborne samples in Italy
    Elisa Banchi, Claudio Gennaro Ametrano, David Stanković, Pierluigi Verardo, Olga Moretti, Francesca Gabrielli, Stefania Lazzarin, Maria Francesca Borney, Francesca Tassan, Mauro Tretiach, Alberto Pallavicini, Lucia Muggia, Hideyuki Doi
    PLOS ONE.2018; 13(3): e0194489.     CrossRef
  • Comparative study of the airborne microbial communities and their functional composition in fine particulate matter (PM2.5) under non-extreme and extreme PM2.5 conditions
    Azilah Abd Aziz, Kwangyul Lee, Byeonghyeok Park, Hongjae Park, Kihong Park, In-Geol Choi, In Seop Chang
    Atmospheric Environment.2018; 194: 82.     CrossRef
  • A review on airborne microorganisms in particulate matters: Composition, characteristics and influence factors
    Yunbo Zhai, Xue Li, Tengfei Wang, Bei Wang, Caiting Li, Guangming Zeng
    Environment International.2018; 113: 74.     CrossRef
  • Give me a sample of air and I will tell which species are found from your region: Molecular identification of fungi from airborne spore samples
    Nerea Abrego, Veera Norros, Panu Halme, Panu Somervuo, Heini Ali‐Kovero, Otso Ovaskainen
    Molecular Ecology Resources.2018; 18(3): 511.     CrossRef
  • Global Ramifications of Dust and Sandstorm Microbiota
    Hayedeh Behzad, Katsuhiko Mineta, Takashi Gojobori, Bill Martin
    Genome Biology and Evolution.2018; 10(8): 1970.     CrossRef
  • The future of immunotherapy with individual allergens: Immunotherapy with fungi
    F. Pineda
    Allergologia et Immunopathologia.2017; 45: 36.     CrossRef
  • Dust Storms from Degraded Drylands of Asia: Dynamics and Health Impacts
    Shinji Otani, Yasunori Kurosaki, Youichi Kurozawa, Masato Shinoda
    Land.2017; 6(4): 83.     CrossRef
  • Fungi diversity in PM2. 5 and PM1 at the summit of Mt. Tai: abundance, size distribution, and seasonal variation
    Caihong Xu, Min Wei, Jianmin Chen, Chao Zhu, Jiarong Li, Ganglin Lv, Xianmang Xu, Lulu Zheng, Guodong Sui, Weijun Li, Bing Chen, Wenxing Wang, Qingzhu Zhang, Aijun Ding, Abdelwahid Mellouki
    Atmospheric Chemistry and Physics.2017; 17(18): 11247.     CrossRef
  • Diversity and abundance of human‐pathogenic fungi associated with pigeon faeces in urban environments
    Won Dong Lee, Jonathan J. Fong, John A. Eimes, Young Woon Lim
    Molecular Ecology.2017; 26(17): 4574.     CrossRef
  • Diversity and Composition of Airborne Fungal Community Associated with Particulate Matters in Beijing during Haze and Non-haze Days
    Dong Yan, Tao Zhang, Jing Su, Li-Li Zhao, Hao Wang, Xiao-Mei Fang, Yu-Qin Zhang, Hong-Yu Liu, Li-Yan Yu
    Frontiers in Microbiology.2016;[Epub]     CrossRef
  • Mold Allergens in Respiratory Allergy: From Structure to Therapy
    Teresa E Twaroch, Mirela Curin, Rudolf Valenta, Ines Swoboda
    Allergy, Asthma & Immunology Research.2015; 7(3): 205.     CrossRef
  • Challenges and Opportunities of Airborne Metagenomics
    H. Behzad, T. Gojobori, K. Mineta
    Genome Biology and Evolution.2015; 7(5): 1216.     CrossRef
  • Associations Between Subjective Symptoms and Serum Immunoglobulin E Levels During Asian Dust Events
    Shinji Otani, Kazunari Onishi, Haosheng Mu, Takenobu Hosoda, Youichi Kurozawa, Masahide Ikeguchi
    International Journal of Environmental Research and Public Health.2014; 11(8): 7636.     CrossRef
Journal of Microbiology : Journal of Microbiology
© The Microbiological Society of Korea.
TOP