Skip Navigation
Skip to contents

Journal of Microbiology : Journal of Microbiology

OPEN ACCESS
SEARCH
Search

Search

Page Path
HOME > Search
1 "SMRT sequencing"
Filter
Filter
Article category
Keywords
Publication year
Journal Article
Antarctic tundra soil metagenome as useful natural resources of cold-active lignocelluolytic enzymes
Han Na Oh , Doyoung Park , Hoon Je Seong , Dockyu Kim , Woo Jun Sul
J. Microbiol. 2019;57(10):865-873.   Published online September 30, 2019
DOI: https://doi.org/10.1007/s12275-019-9217-1
  • 52 View
  • 0 Download
  • 21 Web of Science
  • 21 Crossref
AbstractAbstract
Lignocellulose composed of complex carbohydrates and aromatic heteropolymers is one of the principal materials for the production of renewable biofuels. Lignocellulose-degrading genes from cold-adapted bacteria have a potential to increase the productivity of biological treatment of lignocellulose biomass by providing a broad range of treatment temperatures. Antarctic soil metagenomes allow to access novel genes encoding for the cold-active lignocellulose-degrading enzymes, for biotechnological and industrial applications. Here, we investigated the metagenome targeting cold-adapted microbes in Antarctic organic matter-rich soil (KS 2-1) to mine lignolytic and celluloytic enzymes by performing single molecule, real-time metagenomic (SMRT) sequencing. In the assembled Antarctic metagenomic contigs with relative long reads, we found that 162 (1.42%) of total 11,436 genes were annotated as carbohydrate-active enzymes (CAZy). Actinobacteria, the dominant phylum in this soil’s metagenome, possessed most of candidates of lignocellulose catabolic genes like glycoside hydrolase families (GH13, GH26, and GH5) and auxiliary activity families (AA7 and AA3). The predicted lignocellulose degradation pathways in Antarctic soil metagenome showed synergistic role of various CAZyme harboring bacterial genera including Streptomyces, Streptosporangium, and Amycolatopsis. From phylogenetic relationships with cellular and environmental enzymes, several genes having potential for participating in overall lignocellulose degradation were also found. The results indicated the presence of lignocellulose-degrading bacteria in Antarctic tundra soil and the potential benefits of the lignocelluolytic enzymes as candidates for cold-active enzymes which will be used for the future biofuel-production industry.

Citations

Citations to this article as recorded by  
  • Metagenomic insights into the lignocellulose degradation mechanism during short-term composting of peach sawdust: Core microbial community and carbohydrate-active enzyme profile analysis
    Wei-Wei Zhang, Yu-Xin Guo, Qing-Jun Chen, Yi-Yang Wang, Qiu-Ying Wang, Ya-Ru Yang, Guo-Qing Zhang
    Environmental Technology & Innovation.2025; 37: 103959.     CrossRef
  • Comprehensive characterization and resistome analysis of Antarctic Pseudomonas migulae strain CAS19
    Çiğdem Otur, Sezer Okay, Ömer Konuksever, Oğuzhan Duyar, Yılmaz Kaya, Aslıhan Kurt-Kızıldoğan
    World Journal of Microbiology and Biotechnology.2024;[Epub]     CrossRef
  • Response of carbohydrate-degrading enzymes and microorganisms to land use change in the southeastern Qinghai-Tibetan Plateau, China
    Renhuan Zhu, Belayneh Azene, Piotr Gruba, Kaiwen Pan, Yalemzewd Nigussie, Awoke Guadie, Xiaoming Sun, Xiaogang Wu, Lin Zhang
    Applied Soil Ecology.2024; 200: 105442.     CrossRef
  • Investigating eukaryotic and prokaryotic diversity and functional potential in the cold and alkaline ikaite columns in Greenland
    Mariane Schmidt Thøgersen, Athanasios Zervas, Peter Stougaard, Lea Ellegaard-Jensen
    Frontiers in Microbiology.2024;[Epub]     CrossRef
  • Bacterial Diversity, Metabolic Profiling, and Application Potential of Antarctic Soil Metagenomes
    Mario Fernández, Salvador Barahona, Fernando Gutierrez, Jennifer Alcaíno, Víctor Cifuentes, Marcelo Baeza
    Current Issues in Molecular Biology.2024; 46(11): 13165.     CrossRef
  • Cold adaptation and response genes of Antarctic Cryobacterium sp. SO2 from the Fildes Peninsula, King George Island
    Chui Peng Teoh, Marcelo González‑Aravena, Paris Lavin, Clemente Michael Vui Ling Wong
    Polar Biology.2024; 47(2): 135.     CrossRef
  • A bacterial cold-active dye-decolorizing peroxidase from an Antarctic Pseudomonas strain
    Célica Cagide, Juan José Marizcurrena, Diego Vallés, Beatriz Alvarez, Susana Castro-Sowinski
    Applied Microbiology and Biotechnology.2023; 107(5-6): 1707.     CrossRef
  • Role of metagenomics in prospecting novel endoglucanases, accentuating functional metagenomics approach in second-generation biofuel production: a review
    Ninian Prem Prashanth Pabbathi, Aditya Velidandi, Tanvi Tavarna, Shreyash Gupta, Ram Sarvesh Raj, Pradeep Kumar Gandam, Rama Raju Baadhe
    Biomass Conversion and Biorefinery.2023; 13(2): 1371.     CrossRef
  • Different Response of Plant- and Microbial-Derived Carbon Decomposition Potential between Alpine Steppes and Meadows on the Tibetan Plateau
    Yanhong Yuan, Lan Chen, Jieying Wang, Yanfang Liu, Chengjie Ren, Yaoxin Guo, Jun Wang, Ninglian Wang, Fazhu Zhao, Wenying Wang
    Forests.2023; 14(8): 1580.     CrossRef
  • Investigation of cold-active and mesophilic cellulases: opportunities awaited
    Sambhaji Chavan, Ashvini Shete, Yasmin Mirza, Mahesh S. Dharne
    Biomass Conversion and Biorefinery.2023; 13(10): 8829.     CrossRef
  • Cold-Adapted Proteases: An Efficient and Energy-Saving Biocatalyst
    Zhengfeng Yang, Zhendi Huang, Qian Wu, Xianghua Tang, Zunxi Huang
    International Journal of Molecular Sciences.2023; 24(10): 8532.     CrossRef
  • Reclamation of abandoned saline-alkali soil increased soil microbial diversity and degradation potential
    Fating Yin, Fenghua Zhang
    Plant and Soil.2022; 477(1-2): 521.     CrossRef
  • Recent advances in metagenomic analysis of different ecological niches for enhanced biodegradation of recalcitrant lignocellulosic biomass
    Deepak Kukkar, Pushpender Kumar Sharma, Ki-Hyun Kim
    Environmental Research.2022; 215: 114369.     CrossRef
  • Novel bacterial taxa in a minimal lignocellulolytic consortium and their potential for lignin and plastics transformation
    Carlos Andrés Díaz Rodríguez, Laura Díaz-García, Boyke Bunk, Cathrin Spröer, Katherine Herrera, Natalia A Tarazona, Luis M Rodriguez-R, Jörg Overmann, Diego Javier Jiménez
    ISME Communications.2022;[Epub]     CrossRef
  • The Use of Response Surface Methodology as a Statistical Tool for the Optimisation of Waste and Pure Canola Oil Biodegradation by Antarctic Soil Bacteria
    Khadijah Nabilah Mohd Zahri, Azham Zulkharnain, Claudio Gomez-Fuentes, Suriana Sabri, Khalilah Abdul Khalil, Peter Convey, Siti Aqlima Ahmad
    Life.2021; 11(5): 456.     CrossRef
  • Comparison of Gut Microbiota between Gentoo and Adélie Penguins Breeding Sympatrically on Antarctic Ardley Island as Revealed by Fecal DNA Sequencing
    Yin-Xin Zeng, Hui-Rong Li, Wei Han, Wei Luo
    Diversity.2021; 13(10): 500.     CrossRef
  • Deconstruction of Lignin: From Enzymes to Microorganisms
    Jéssica P. Silva, Alonso R. P. Ticona, Pedro R. V. Hamann, Betania F. Quirino, Eliane F. Noronha
    Molecules.2021; 26(8): 2299.     CrossRef
  • Molecular Characterization of Novel Family IV and VIII Esterases from a Compost Metagenomic Library
    Jong-Eun Park, Geum-Seok Jeong, Hyun-Woo Lee, Hoon Kim
    Microorganisms.2021; 9(8): 1614.     CrossRef
  • Illite/smectite clay regulating laccase encoded genes to boost lignin decomposition and humus formation in composting habitats revealed by metagenomics analysis
    Qingran Meng, Susu Wang, Qiuqi Niu, Hailong Yan, Gen Li, Qiuhui Zhu, Qunliang Li
    Bioresource Technology.2021; 338: 125546.     CrossRef
  • Cultivation-independent and cultivation-dependent metagenomes reveal genetic and enzymatic potential of microbial community involved in the degradation of a complex microbial polymer
    Ohana Y. A. Costa, Mattias de Hollander, Agata Pijl, Binbin Liu, Eiko E. Kuramae
    Microbiome.2020;[Epub]     CrossRef
  • Extremophile Microbial Communities and Enzymes for Bioenergetic Application Based on Multi-Omics Tools
    Gislaine Fongaro, Guilherme Augusto Maia, Paula Rogovski, Rafael Dorighello Cadamuro, Joana Camila Lopes, Renato Simões Moreira, Aline Frumi Camargo, Thamarys Scapini, Fábio Spitza Stefanski, Charline Bonatto, Doris Sobral Marques Souza, Patrícia Hermes
    Current Genomics.2020; 21(4): 240.     CrossRef

Journal of Microbiology : Journal of Microbiology
TOP