Journal Articles
- Distribution characteristics of fungal communities with depth in paddy fields of three soil types in China
-
Xu Li , Huanhuan Wang , Xiang Li , Xinyu Li , Huiwen Zhang
-
J. Microbiol. 2020;58(4):279-287. Published online February 27, 2020
-
DOI: https://doi.org/10.1007/s12275-020-9409-8
-
-
57
View
-
0
Download
-
14
Web of Science
-
9
Crossref
-
Abstract
-
Little is known about the distribution of fungal communities
with soil depth on relatively large scales. In this study, typical
paddy soils in three regions (Hailun, Changshu, and Yingtan)
from north to south China were selected to investigate the
vertical distribution (0-100 cm) of the fungal community by
Illumina MiSeq sequencing, and to identify the main factors
influencing the fungal community distribution. The results
indicated that the structure of the soil fungal community
changed significantly with region and soil depth. Soil fungal
taxa such as Zygomycota, Glomeromycota, Saccharomycete,
Kazachstania, Mortierella, Massariosphaeria, Hypholoma, and
Zopfiella were enriched at depths of 0–20 cm, whereas Dothideomycetes,
Microbotryomycetes, Tremellomycetes, Sporobolomyces,
Cryptococcus, Rhodotorula, Fusarium, and Pyrenochaetopsis
had high relative abundances at 80–100 cm.
Variance partitioning analysis indicated that the geographic
distance contributed more to the fungal community variation
than environmental variables on a large scale. In addition,
soil total carbon and nitrogen contents were the main
environmental factors driving the vertical distribution of the
fungal community in paddy soils.
-
Citations
Citations to this article as recorded by

- Region and Crop Type Influenced Fungal Diversity and Community Structure in Agricultural Areas in Qinghai Province
Lianyu Zhou, Xuelan Ma, Longrui Wang, Wenjuan Sun, Yu Liu, Yun Ma, Huichun Xie, Feng Qiao
Agriculture.2023; 14(1): 6. CrossRef - Comparing Sediment Microbial Communities of Arctic Beaver Ponds to Tundra Lakes and Streams
Kelly C. Shannon, Natasha R. Christman, Byron C. Crump, Michael P. Carey, Joshua Koch, Laura L. Lapham, Jonathan O’Donnell, Brett A. Poulin, Ken D. Tape, Jason A. Clark, Frederick S. Colwell
Journal of Geophysical Research: Biogeosciences.2023;[Epub] CrossRef - Soil depth as a driver of microbial and carbon dynamics in a planted forest (Pinus radiata) pumice soil
Alexa K. Byers, Loretta G. Garrett, Charlotte Armstrong, Fiona Dean, Steve A. Wakelin
SOIL.2023; 9(1): 55. CrossRef - Microbial communities in the diagnostic horizons of agricultural Isohumosols in northeast China reflect their soil classification
Zhuxiu Liu, Haidong Gu, Qin Yao, Feng Jiao, Junjie Liu, Jian Jin, Xiaobing Liu, Guanghua Wang
CATENA.2022; 216: 106430. CrossRef - Effects of continuous and rotational cropping practices on soil fungal communities in pineapple cultivation
Jing Chen, Hui Zeng
PeerJ.2022; 10: e13937. CrossRef - Soil texture is a stronger driver of the maize rhizosphere microbiome and extracellular enzyme activities than soil depth or the presence of root hairs
Bunlong Yim, Zeeshan Ibrahim, Lioba Rüger, Minh Ganther, Lorrie Maccario, Søren J. Sørensen, Anna Heintz-Buschart, Mika T. Tarkka, Doris Vetterlein, Michael Bonkowski, Evgenia Blagodatskaya, Kornelia Smalla
Plant and Soil.2022; 478(1-2): 229. CrossRef - The Effects of Drainage on the Soil Fungal Community in Freshwater Wetlands
Qingqing Zhao, Junhong Bai, Jia Jia, Guangliang Zhang, Jianing Wang, Yongchao Gao
Frontiers in Ecology and Evolution.2022;[Epub] CrossRef - Diversity and structure of soil fungal communities unveil the building history of a burial mound of ancient Japan (Tobiotsuka Kofun, Okayama Prefecture)
Samuele Voyron, Chiara Tonon, Laura Guglielmone, Luisella Celi, Cesare Comina, Hajime Ikeda, Naoko Matsumoto, Daniele Petrella, Joseph Ryan, Kazuhiro Sato, Akira Seike, Ivan Varriale, Jun Yamashita, Sergio E. Favero-Longo, Eleonora Bonifacio
Journal of Archaeological Science.2022; 146: 105656. CrossRef - Straw retention efficiently improves fungal communities and functions in the fallow ecosystem
Caifang Zhang, Zhaoli Lin, Youxiong Que, Nyumah Fallah, Muhammad Tayyab, Shiyan Li, Jun Luo, Zichu Zhang, Ahmad Yusuf Abubakar, Hua Zhang
BMC Microbiology.2021;[Epub] CrossRef
- Microbial diversity in the rumen, reticulum, omasum, and abomasum of yak on a rapid fattening regime in an agro-pastoral transition zone
-
Dan Xue , Huai Chen , Xiaolin Luo , Jiuqiang Guan , Yixin He , Xinquan Zhao
-
J. Microbiol. 2018;56(10):734-743. Published online August 22, 2018
-
DOI: https://doi.org/10.1007/s12275-018-8133-0
-
-
53
View
-
0
Download
-
28
Crossref
-
Abstract
-
The ruminant digestive system harbors a complex gut microbiome,
which is poorly understood in the case of the four
stomach compartments of yak. High-throughput sequencing
and quantitative PCR were used to analyse microbial communities
in the rumen, reticulum, omasum, and abomasum of
six domesticated yak. The diversity of prokaryotes was higher
in reticulum and omasum than in rumen and abomasum.
Bacteroidetes predominated in the four stomach compartments,
with abundance gradually decreasing in the trend
rumen > reticulum > omasum > abomasum. Microorganism
composition was different among the four compartments,
all of which contained high levels of bacteria, methanogens,
protozoa and anaerobic fungi. Some prokaryotic genera were
associated with volatile fatty acids and pH. This study provides
the first insights into the microorganism composition
of four stomach compartments in yak, and may provide a
foundation for future studies in this area.
-
Citations
Citations to this article as recorded by

- Pengujian Potensi Cairan Omasum Sapi untuk Ketercernaan Tiga Jenis Bahan Organik sebagai Sumber Bioetanol Generasi Ke-2
Endah Dwi Hastuti, Riska Amalia, Munifatul Izzati
Buletin Anatomi dan Fisiologi.2024; 9(1): 75. CrossRef - Effects of Two Feeding Patterns on Growth Performance, Rumen Fermentation Parameters, and Bacterial Community Composition in Yak Calves
Qin Li, Yan Tu, Tao Ma, Kai Cui, Jianxin Zhang, Qiyu Diao, Yanliang Bi
Microorganisms.2023; 11(3): 576. CrossRef - Transcriptome profiling in rumen, reticulum, omasum, and abomasum tissues during the developmental transition of pre-ruminant to the ruminant in yaks
Yili Liu, Qi Min, Jiao Tang, Lu Yang, Xinxin Meng, Tao Peng, Mingfeng Jiang
Frontiers in Veterinary Science.2023;[Epub] CrossRef - Nutrient availability of roughages in isocaloric and isonitrogenous diets alters the bacterial networks in the whole gastrointestinal tract of Hu sheep
Yuqi Li, Jian Gao, Yihan Xue, Ruolin Sun, Xiaoni Sun, Zhanying Sun, Suozhu Liu, Zhankun Tan, Weiyun Zhu, Yanfen Cheng
BMC Microbiology.2023;[Epub] CrossRef - Review: Effect of Experimental Diets on the Microbiome of Productive Animals
Rodrigo Huaiquipán, John Quiñones, Rommy Díaz, Carla Velásquez, Gastón Sepúlveda, Lidiana Velázquez, Erwin A. Paz, Daniela Tapia, David Cancino, Néstor Sepúlveda
Microorganisms.2023; 11(9): 2219. CrossRef - “The Yak”—A remarkable animal living in a harsh environment: An overview of its feeding, growth, production performance, and contribution to food security
Ali Mujtaba Shah, Iqra Bano, Izhar Hyder Qazi, Maharach Matra, Metha Wanapat
Frontiers in Veterinary Science.2023;[Epub] CrossRef - Effects of Two Different Straw Pellets on Yak Growth Performance and Ruminal Microbiota during Cold Season
Xiangyan Wang, Bingang Shi, Zhi Zuo, Youpeng Qi, Shijie Zhao, Xueping Zhang, Lijuan Lan, Yu Shi, Xiu Liu, Shaobin Li, Jiqing Wang, Jiang Hu
Animals.2023; 13(3): 335. CrossRef - Isoacids supplementation improves growth performance and feed fiber digestibility associated with ruminal bacterial community in yaks
Fei Jiang, Yanhua Gao, Zhongli Peng, Xiulian Ma, Yinjie You, Zhibin Hu, Anxiang He, Yupeng Liao
Frontiers in Microbiology.2023;[Epub] CrossRef - Representativeness of Fecal Microbiota Is Limited to Cecum and Colon in Domestic Yak
Wen Qin, Pengfei Song, Jirong Li, Jiuxiang Xie, Shoudong Zhang
Sustainability.2022; 14(16): 10263. CrossRef - Dynamic changes in the yak rumen eukaryotic community and metabolome characteristics in response to feed type
Xiaojing Cui, Yue Liu, Hao Wu, Qingxiang Meng, Shujie Liu, Shatuo Chai, Lizhuang Hao, Zhenming Zhou
Frontiers in Veterinary Science.2022;[Epub] CrossRef - The Response of Ruminal Microbiota and Metabolites to Different Dietary Protein Levels in Tibetan Sheep on the Qinghai-Tibetan Plateau
Xungang Wang, Tianwei Xu, Xiaoling Zhang, Na Zhao, Linyong Hu, Hongjin Liu, Qian Zhang, Yuanyue Geng, Shengping Kang, Shixiao Xu
Frontiers in Veterinary Science.2022;[Epub] CrossRef - Yak Gut Microbiota: A Systematic Review and Meta-Analysis
Yuxin Su, Junhong Su, Fanglin Li, Xiaojing Tian, Zewen Liu, Gongtao Ding, Jialin Bai, Zhuo Li, Zhongren Ma, Maikel P. Peppelenbosch
Frontiers in Veterinary Science.2022;[Epub] CrossRef - Gastrointestinal Biogeography of Luminal Microbiota and Short-Chain Fatty Acids in Sika Deer (Cervus nippon)
Xiaolong Hu, Yuting Wei, Tianxiang Zhang, Xiaoguo Wang, Yongtao Xu, Weiwei Zhang, Yunlin Zheng, Martha Vives
Applied and Environmental Microbiology.2022;[Epub] CrossRef - Comparison of Microbial Community and Metabolites in Four Stomach Compartments of Myostatin-Gene-Edited and Non-edited Cattle
Xinyu Zhou, Mingjuan Gu, Lin Zhu, Di Wu, Miaomiao Yang, Yajie Gao, Xueqiao Wang, Chunling Bai, Zhuying Wei, Lei Yang, Guangpeng Li
Frontiers in Microbiology.2022;[Epub] CrossRef - Effects of trace minerals supply from rumen sustained release boluses on milk yields and components, rumen fermentation and the rumen bacteria in lactating yaks (Bos grunniens)
Z.W. Zhao, Z.Y. Ma, H.C. Wang, C.F. Zhang
Animal Feed Science and Technology.2022; 283: 115184. CrossRef - Characterization of the bacterial microbiota across the different intestinal segments of the Qinghai semi-fine wool sheep on the Qinghai-Tibetan Plateau
Xungang Wang, Linyong Hu, Hongjin Liu, Tianwei Xu, Na Zhao, Xiaoling Zhang, Yuanyue Geng, Shengping Kang, Shixiao Xu
Animal Bioscience.2021; 34(12): 1921. CrossRef - Multi-Omics Analysis Reveals a Dependent Relationship Between Rumen Bacteria and Diet of Grass- and Grain-Fed Yaks
Chenchen Xu, Wenwen Liu, Baozhong Sun, Songshan Zhang, Shou Zhang, Yuanli Yang, Yuanhua Lei, Lan Chang, Peng Xie, Huayi Suo
Frontiers in Microbiology.2021;[Epub] CrossRef - Bacterial Community Characteristics in the Gastrointestinal Tract of Yak (Bos grunniens) Fully Grazed on Pasture of the Qinghai-Tibetan Plateau of China
Xueping Han, Hongjin Liu, Linyong Hu, Na Zhao, Shixiao Xu, Zhijia Lin, Yongwei Chen
Animals.2021; 11(8): 2243. CrossRef - Effects of rumen-protected methionine and lysine supplementation on milk yields and components, rumen fermentation, and the rumen microbiome in lactating yaks (Bos grunniens)
Z.W. Zhao, Z.Y. Ma, H.C. Wang, C.F. Zhang
Animal Feed Science and Technology.2021; 277: 114972. CrossRef - Response of sheep rumen fermentation and microbial communities to feed infected with the endophyte Epichloë gansuensis as evaluated with rumen-simulating technology
Yaling Ma, Hucheng Wang, Chunjie Li
Journal of Microbiology.2021; 59(8): 718. CrossRef - Brisket Disease Is Associated with Lower Volatile Fatty Acid Production and Altered Rumen Microbiome in Holstein Heifers
Naren Gaowa, Kevin Panke-Buisse, Shuxiang Wang, Haibo Wang, Zhijun Cao, Yajing Wang, Kun Yao, Shengli Li
Animals.2020; 10(9): 1712. CrossRef - A Mixed Phytogenic Modulates the Rumen Bacteria Composition and Milk Fatty Acid Profile of Water Buffaloes
Faiz-ul Hassan, Hossam M. Ebeid, Zhenhua Tang, Mengwei Li, Lijuan Peng, Kaiping Peng, Xin Liang, Chengjian Yang
Frontiers in Veterinary Science.2020;[Epub] CrossRef - Comparing the Bacterial Community in the Gastrointestinal Tracts Between Growth-Retarded and Normal Yaks on the Qinghai–Tibetan Plateau
Jian Ma, Yixiao Zhu, Zhisheng Wang, Xiong Yu, Rui Hu, Xueying Wang, Guang Cao, Huawei Zou, Ali Mujtaba Shah, Quanhui Peng, Bai Xue, Lizhi Wang, Suonan Zhao, Xiangying Kong
Frontiers in Microbiology.2020;[Epub] CrossRef - Bacterial communities in the solid, liquid, dorsal, and ventral epithelium fractions of yak (Bos grunniens) rumen
Qingmiao Ren, Huazhe Si, Xiaoting Yan, Chang Liu, Luming Ding, Ruijun Long, Zhipeng Li, Qiang Qiu
MicrobiologyOpen.2020;[Epub] CrossRef - Interactions Between Rumen Microbes, VFAs, and Host Genes Regulate Nutrient Absorption and Epithelial Barrier Function During Cold Season Nutritional Stress in Tibetan Sheep
Xiu Liu, Yuzhu Sha, Renqing Dingkao, Wei Zhang, Weibing Lv, Hong Wei, Hao Shi, Jiang Hu, Jiqing Wang, Shaobin Li, Zhiyun Hao, Yuzhu Luo
Frontiers in Microbiology.2020;[Epub] CrossRef - Yak rumen microbial diversity at different forage growth stages of an alpine meadow on the Qinghai-Tibet Plateau
Li Ma, Shixiao Xu, Hongjin Liu, Tianwei Xu, Linyong Hu, Na Zhao, Xueping Han, Xiaoling Zhang
PeerJ.2019; 7: e7645. CrossRef - Comparing the Microbial Community in Four Stomach of Dairy Cattle, Yellow Cattle and Three Yak Herds in Qinghai-Tibetan Plateau
Jinwei Xin, Zhixin Chai, Chengfu Zhang, Qiang Zhang, Yong Zhu, Hanwen Cao, Jincheng Zhong, Qiumei Ji
Frontiers in Microbiology.2019;[Epub] CrossRef - Dynamic Alterations in Yak Rumen Bacteria Community and Metabolome Characteristics in Response to Feed Type
Chang Liu, Hao Wu, Shujie Liu, Shatuo Chai, Qingxiang Meng, Zhenming Zhou
Frontiers in Microbiology.2019;[Epub] CrossRef
Research Support, Non-U.S. Gov't
- Improved pipeline for reducing erroneous identification by 16S rRNA sequences using the Illumina MiSeq platform
-
Yoon-Seong Jeon , Sang-Cheol Park , Jeongmin Lim , Jongsik Chun , Bong-Soo Kim
-
J. Microbiol. 2015;53(1):60-69. Published online January 4, 2015
-
DOI: https://doi.org/10.1007/s12275-015-4601-y
-
-
60
View
-
0
Download
-
34
Crossref
-
Abstract
-
The cost of DNA sequencing has decreased due to advancements
in Next Generation Sequencing. The number of sequences
obtained from the Illumina platform is large, use of
this platform can reduce costs more than the 454 pyrosequencer.
However, the Illumina platform has other challenges,
including bioinformatics analysis of large numbers
of sequences and the need to reduce erroneous nucleotides
generated at the 3-ends of the sequences. These erroneous
sequences can lead to errors in analysis of microbial communities.
Therefore, correction of these erroneous sequences
is necessary for accurate taxonomic identification. Several
studies that have used the Illumina platform to perform metagenomic
analyses proposed curating pipelines to increase
accuracy. In this study, we evaluated the likelihood of obtaining
an erroneous microbial composition using the MiSeq
250 bp paired sequence platform and improved the pipeline
to reduce erroneous identifications. We compared different
sequencing conditions by varying the percentage of control
phiX added, the concentration of the sequencing library, and
the 16S rRNA gene target region using a mock community
sample composed of known sequences. Our recommended
method
corrected erroneous nucleotides and improved identification
accuracy. Overall, 99.5% of the total reads shared
95% similarity with the corresponding template sequences
and 93.6% of the total reads shared over 97% similarity. This
indicated that the MiSeq platform can be used to analyze microbial
communities at the genus level with high accuracy.
The improved analysis method recommended in this study
can be applied to amplicon studies in various environments
using high-throughput reads generated on the MiSeq platform.
-
Citations
Citations to this article as recorded by

- Diversity analysis of the yeast and fungal community structure in Kazak cheese from the Yili Pastoral area in Xinjiang
Yuhui Li, Chunyan Wang, Jungang Wang
International Dairy Journal.2023; 143: 105672. CrossRef - Effects of lactic acid bacteria fermented feed and three types of lactic acid bacteria (L. plantarum, L. acidophilus, B. animalis) on intestinal microbiota and T cell polarization (Th1, Th2, Th17, Treg) in the intestinal lymph nodes and spleens of rats
Da Yoon Yu, Sang-Hyon Oh, In Sung Kim, Gwang Il Kim, Jeong A Kim, Yang Soo Moon, Jae Cheol Jang, Sang Suk Lee, Jong Hyun Jung, Hwa Chun Park, Kwang Keun Cho
Animal Bioscience.2023; 36(1): 156. CrossRef - Soil microbial community and their functional genes during grassland restoration
Jiaojiao Liao, Yanxing Dou, Xuan Yang, Shaoshan An
Journal of Environmental Management.2023; 325: 116488. CrossRef - Remediation of fomesafen contaminated soil by Bacillus sp. Za: Degradation pathway, community structure and bioenhanced remediation
Guoqiang Zhao, Jing Zhou, Yanning Tian, Qifeng Chen, Dongmei Mao, Jianchun Zhu, Xing Huang
Environmental Pollution.2023; 336: 122460. CrossRef - Inactivation of Antibiotic-Resistant Bacteria in Wastewater by Ozone-Based Advanced Water Treatment Processes
Takashi Azuma, Masaru Usui, Tetsuya Hayashi
Antibiotics.2022; 11(2): 210. CrossRef - LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis
Ezgi Özkurt, Joachim Fritscher, Nicola Soranzo, Duncan Y. K. Ng, Robert P. Davey, Mohammad Bahram, Falk Hildebrand
Microbiome.2022;[Epub] CrossRef - Intestinal microbial composition changes induced by
Lactobacillus plantarum GBL 16, 17 fermented feed and
intestinal immune homeostasis regulation in pigs
Da Yoon Yu, Sang-Hyon Oh, In Sung Kim, Gwang Il Kim, Jeong A Kim, Yang Soo Moon, Jae Cheol Jang, Sang Suk Lee, Jong Hyun Jung, Jun Park, Kwang Keun Cho
Journal of Animal Science and Technology.2022; 64(6): 1184. CrossRef - Investigating the core microbiota and its influencing factors in traditional Chinese pickles
Feiyu An, Huijun Sun, Junrui Wu, Chunyan Zhao, Tong Li, Heting Huang, Qiang Fang, Endong Mu, Rina Wu
Food Research International.2021; 147: 110543. CrossRef - Soil remediation approach and bacterial community structure in a long-term contaminated soil by a mining spill (Aznalcóllar, Spain)
M. Paniagua-López, M. Vela-Cano, D. Correa-Galeote, F. Martín-Peinado, F.J. Martínez Garzón, C. Pozo, J. González-López, M. Sierra Aragón
Science of The Total Environment.2021; 777: 145128. CrossRef - Effects of natural sunlight on antimicrobial-resistant bacteria (AMRB) and antimicrobial-susceptible bacteria (AMSB) in wastewater and river water
Takashi Azuma, Tetsuya Hayashi
Science of The Total Environment.2021; 766: 142568. CrossRef - On-site chlorination responsible for effective disinfection of wastewater from hospital
Takashi Azuma, Tetsuya Hayashi
Science of The Total Environment.2021; 776: 145951. CrossRef - Disinfection of Antibiotic-resistant Bacteria in Sewage and Hospital Effluent by Ozonation
Takashi Azuma, Tetsuya Hayashi
Ozone: Science & Engineering.2021; 43(5): 413. CrossRef - Analysis of bacterial diversity and biogenic amines content during fermentation of farmhouse sauce from Northeast China
Yu Hao, Bo Sun
Food Control.2020; 108: 106861. CrossRef - Performance of enhanced anaerobic digestion with different pyrolysis biochars and microbial communities
Ruixia Shen, Yong Jing, Jing Feng, Juan Luo, Jiadong Yu, Lixin Zhao
Bioresource Technology.2020; 296: 122354. CrossRef - Astrovirus infects actively secreting goblet cells and alters the gut mucus barrier
Valerie Cortez, David F. Boyd, Jeremy Chase Crawford, Bridgett Sharp, Brandi Livingston, Hannah M. Rowe, Amy Davis, Ramzi Alsallaq, Camenzind G. Robinson, Peter Vogel, Jason W. Rosch, Elisa Margolis, Paul G. Thomas, Stacey Schultz-Cherry
Nature Communications.2020;[Epub] CrossRef - Metagenomic analysis of bacterial community structure and functions during the fermentation of da-jiang, a Chinese traditional fermented food
Mengxi Xie, Feiyu An, Yue Zhao, Rina Wu, Junrui Wu
LWT.2020; 129: 109450. CrossRef - Relationship between nasopharyngeal microbiota and patient’s susceptibility to viral infection
Grégory Dubourg, Sophie Edouard, Didier Raoult
Expert Review of Anti-infective Therapy.2019; 17(6): 437. CrossRef - Structure and Diversity of Soil Bacterial Communities in Offshore Islands
Yu-Te Lin, Yu-Fei Lin, Isheng J. Tsai, Ed-Haun Chang, Shih-Hao Jien, Yen-Ju Lin, Chih-Yu Chiu
Scientific Reports.2019;[Epub] CrossRef - Meta‐omics reveal microbial assortments and key enzymes in bean sauce mash, a traditional fermented soybean product
Mengxi Xie, Feiyu An, Junrui Wu, Yiming Liu, Haishu Shi, Rina Wu
Journal of the Science of Food and Agriculture.2019; 99(14): 6522. CrossRef - Insights into evolutionary trends in molecular biology tools in microbial screening for biohydrogen production through dark fermentation
Gopalakrishnan Kumar, Si-Kyung Cho, Periyasamy Sivagurunathan, Parthiban Anburajan, Durga Madhab Mahapatra, Jeong-Hoon Park, Arivalagan Pugazhendhi
International Journal of Hydrogen Energy.2018; 43(43): 19885. CrossRef - Analyses of microbial community of naturally homemade soybean pastes in Liaoning Province of China by Illumina Miseq Sequencing
Xiaodong Sun, Guozhong Lyu, Yushi Luan, Zhihui Zhao, Hong Yang, Dan Su
Food Research International.2018; 111: 50. CrossRef - Effects of Rubus coreanus byproducts on intestinal microbiota and the immune modulation
Da Yoon Yu, Sung Hak Kim, Jeong A Kim, In Sung Kim, Yang Soo Moon, Sang Suk Lee, Hwa Chun Park, Jong Hyun Jung, Yi Hyung Chung, Dae Keun Shin, Ki Chang Nam, In Soon Choi, Kwang Keun Cho
Asian-Australasian Journal of Animal Sciences.2018; 31(3): 429. CrossRef - Sequencing Batch Reactor and Bacterial Community in Aerobic Granular Sludge for Wastewater Treatment of Noodle-Manufacturing Sector
Tang Chinh, Phung Hieu, Bui Cuong, Nguyen Linh, Nguyen Lan, Nguyen Nguyen, Nguyen Hung, Le Hien
Applied Sciences.2018; 8(4): 509. CrossRef - An improved metagenomic strategy reveals an unprecedentedly high level of intragenomic polymorphism of ribosomal DNA in three species of Camellia
Yang Shao, Min Zhang, Ying Xu, Yong‐Qing Zhu, Takahiro Yonezawa, Yu‐Guo Wang, Zhi‐Ping Song, Wen‐Ju Zhang
Journal of Systematics and Evolution.2018; 56(3): 250. CrossRef - Comparison of intestinal microbiota and activities of digestive and immune-related enzymes of sea cucumber Apostichopus japonicus in two habitats
Qi Wang, Xiumei Zhang, Muyan Chen, Wentao Li, Peidong Zhang
Journal of Oceanology and Limnology.2018; 36(3): 990. CrossRef - DNA Sequencing as a Tool to Monitor Marine Ecological Status
Kelly D. Goodwin, Luke R. Thompson, Bernardo Duarte, Tim Kahlke, Andrew R. Thompson, João C. Marques, Isabel Caçador
Frontiers in Marine Science.2017;[Epub] CrossRef - Differences in root-associated bacterial communities among fine root branching orders of poplar (Populus × euramericana (Dode) Guinier.)
Qitong Wang, Nian Wang, Yanping Wang, Qingkui Wang, Baoli Duan
Plant and Soil.2017; 421(1-2): 123. CrossRef - Advanced nitrogen removal from the biological secondary effluent of dyeing wastewater via a biological–ferric–carbon nitrification and denitrification process
Hong Chen, Gang Xue, Mengran Jiang, Yuying Cheng
RSC Advances.2016; 6(108): 106951. CrossRef - Microbial electrolysis cell to treat hydrothermal liquefied wastewater from cornstalk and recover hydrogen: Degradation of organic compounds and characterization of microbial community
Ruixia Shen, Zhidan Liu, Yanhong He, Yuanhui Zhang, Jianwen Lu, Zhangbing Zhu, Buchun Si, Chong Zhang, Xin-Hui Xing
International Journal of Hydrogen Energy.2016; 41(7): 4132. CrossRef - DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses
Marie Lisandra Zepeda-Mendoza, Kristine Bohmann, Aldo Carmona Baez, M. Thomas P. Gilbert
BMC Research Notes.2016;[Epub] CrossRef - Studying long 16S rDNA sequences with ultrafast-metagenomic sequence classification using exact alignments (Kraken)
Fabiola Valenzuela-González, Marcel Martínez-Porchas, Enrique Villalpando-Canchola, Francisco Vargas-Albores
Journal of Microbiological Methods.2016; 122: 38. CrossRef - Adaptive evolution and metabolic engineering of a cellobiose- and xylose- negative Corynebacterium glutamicum that co-utilizes cellobiose and xylose
Jungseok Lee, Jack N. Saddler, Youngsoon Um, Han Min Woo
Microbial Cell Factories.2016;[Epub] CrossRef - Bacteria Associated WithPiezodorus guildinii(Hemiptera: Pentatomidae), With Special Reference to Those Transmitted by Feeding
Claudia Husseneder, Jong-Seok Park, Andrea Howells, Chinmay V. Tikhe, Jeffrey A. Davis
Environmental Entomology.2016; : nvw112. CrossRef - Fecal Microbiota Analysis: An Overview of Sample Collection Methods and Sequencing Strategies
Vincent Thomas, James Clark, Joël Doré
Future Microbiology.2015; 10(9): 1485. CrossRef