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- Distribution characteristics of fungal communities with depth in paddy fields of three soil types in China
- Xu Li , Huanhuan Wang , Xiang Li , Xinyu Li , Huiwen Zhang
- J. Microbiol. 2020;58(4):279-287. Published online February 27, 2020
- DOI: https://doi.org/10.1007/s12275-020-9409-8
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- 14 Web of Science
- 9 Crossref
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Abstract
- Little is known about the distribution of fungal communities with soil depth on relatively large scales. In this study, typical paddy soils in three regions (Hailun, Changshu, and Yingtan) from north to south China were selected to investigate the vertical distribution (0-100 cm) of the fungal community by Illumina MiSeq sequencing, and to identify the main factors influencing the fungal community distribution. The results indicated that the structure of the soil fungal community changed significantly with region and soil depth. Soil fungal taxa such as Zygomycota, Glomeromycota, Saccharomycete, Kazachstania, Mortierella, Massariosphaeria, Hypholoma, and Zopfiella were enriched at depths of 0–20 cm, whereas Dothideomycetes, Microbotryomycetes, Tremellomycetes, Sporobolomyces, Cryptococcus, Rhodotorula, Fusarium, and Pyrenochaetopsis had high relative abundances at 80–100 cm. Variance partitioning analysis indicated that the geographic distance contributed more to the fungal community variation than environmental variables on a large scale. In addition, soil total carbon and nitrogen contents were the main environmental factors driving the vertical distribution of the fungal community in paddy soils.
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Citations
Citations to this article as recorded by
- Region and Crop Type Influenced Fungal Diversity and Community Structure in Agricultural Areas in Qinghai Province
Lianyu Zhou, Xuelan Ma, Longrui Wang, Wenjuan Sun, Yu Liu, Yun Ma, Huichun Xie, Feng Qiao
Agriculture.2023; 14(1): 6. CrossRef - Comparing Sediment Microbial Communities of Arctic Beaver Ponds to Tundra Lakes and Streams
Kelly C. Shannon, Natasha R. Christman, Byron C. Crump, Michael P. Carey, Joshua Koch, Laura L. Lapham, Jonathan O’Donnell, Brett A. Poulin, Ken D. Tape, Jason A. Clark, Frederick S. Colwell
Journal of Geophysical Research: Biogeosciences.2023;[Epub] CrossRef - Soil depth as a driver of microbial and carbon dynamics in a planted forest (Pinus radiata) pumice soil
Alexa K. Byers, Loretta G. Garrett, Charlotte Armstrong, Fiona Dean, Steve A. Wakelin
SOIL.2023; 9(1): 55. CrossRef - Microbial communities in the diagnostic horizons of agricultural Isohumosols in northeast China reflect their soil classification
Zhuxiu Liu, Haidong Gu, Qin Yao, Feng Jiao, Junjie Liu, Jian Jin, Xiaobing Liu, Guanghua Wang
CATENA.2022; 216: 106430. CrossRef - Effects of continuous and rotational cropping practices on soil fungal communities in pineapple cultivation
Jing Chen, Hui Zeng
PeerJ.2022; 10: e13937. CrossRef - Soil texture is a stronger driver of the maize rhizosphere microbiome and extracellular enzyme activities than soil depth or the presence of root hairs
Bunlong Yim, Zeeshan Ibrahim, Lioba Rüger, Minh Ganther, Lorrie Maccario, Søren J. Sørensen, Anna Heintz-Buschart, Mika T. Tarkka, Doris Vetterlein, Michael Bonkowski, Evgenia Blagodatskaya, Kornelia Smalla
Plant and Soil.2022; 478(1-2): 229. CrossRef - The Effects of Drainage on the Soil Fungal Community in Freshwater Wetlands
Qingqing Zhao, Junhong Bai, Jia Jia, Guangliang Zhang, Jianing Wang, Yongchao Gao
Frontiers in Ecology and Evolution.2022;[Epub] CrossRef - Diversity and structure of soil fungal communities unveil the building history of a burial mound of ancient Japan (Tobiotsuka Kofun, Okayama Prefecture)
Samuele Voyron, Chiara Tonon, Laura Guglielmone, Luisella Celi, Cesare Comina, Hajime Ikeda, Naoko Matsumoto, Daniele Petrella, Joseph Ryan, Kazuhiro Sato, Akira Seike, Ivan Varriale, Jun Yamashita, Sergio E. Favero-Longo, Eleonora Bonifacio
Journal of Archaeological Science.2022; 146: 105656. CrossRef - Straw retention efficiently improves fungal communities and functions in the fallow ecosystem
Caifang Zhang, Zhaoli Lin, Youxiong Que, Nyumah Fallah, Muhammad Tayyab, Shiyan Li, Jun Luo, Zichu Zhang, Ahmad Yusuf Abubakar, Hua Zhang
BMC Microbiology.2021;[Epub] CrossRef
- Region and Crop Type Influenced Fungal Diversity and Community Structure in Agricultural Areas in Qinghai Province
- Microbial diversity in the rumen, reticulum, omasum, and abomasum of yak on a rapid fattening regime in an agro-pastoral transition zone
- Dan Xue , Huai Chen , Xiaolin Luo , Jiuqiang Guan , Yixin He , Xinquan Zhao
- J. Microbiol. 2018;56(10):734-743. Published online August 22, 2018
- DOI: https://doi.org/10.1007/s12275-018-8133-0
- 53 View
- 0 Download
- 28 Crossref
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Abstract
- The ruminant digestive system harbors a complex gut microbiome, which is poorly understood in the case of the four stomach compartments of yak. High-throughput sequencing and quantitative PCR were used to analyse microbial communities in the rumen, reticulum, omasum, and abomasum of six domesticated yak. The diversity of prokaryotes was higher in reticulum and omasum than in rumen and abomasum. Bacteroidetes predominated in the four stomach compartments, with abundance gradually decreasing in the trend rumen > reticulum > omasum > abomasum. Microorganism composition was different among the four compartments, all of which contained high levels of bacteria, methanogens, protozoa and anaerobic fungi. Some prokaryotic genera were associated with volatile fatty acids and pH. This study provides the first insights into the microorganism composition of four stomach compartments in yak, and may provide a foundation for future studies in this area.
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Citations
Citations to this article as recorded by- Pengujian Potensi Cairan Omasum Sapi untuk Ketercernaan Tiga Jenis Bahan Organik sebagai Sumber Bioetanol Generasi Ke-2
Endah Dwi Hastuti, Riska Amalia, Munifatul Izzati
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Microorganisms.2023; 11(3): 576. CrossRef - Transcriptome profiling in rumen, reticulum, omasum, and abomasum tissues during the developmental transition of pre-ruminant to the ruminant in yaks
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Applied and Environmental Microbiology.2022;[Epub] CrossRef - Comparison of Microbial Community and Metabolites in Four Stomach Compartments of Myostatin-Gene-Edited and Non-edited Cattle
Xinyu Zhou, Mingjuan Gu, Lin Zhu, Di Wu, Miaomiao Yang, Yajie Gao, Xueqiao Wang, Chunling Bai, Zhuying Wei, Lei Yang, Guangpeng Li
Frontiers in Microbiology.2022;[Epub] CrossRef - Effects of trace minerals supply from rumen sustained release boluses on milk yields and components, rumen fermentation and the rumen bacteria in lactating yaks (Bos grunniens)
Z.W. Zhao, Z.Y. Ma, H.C. Wang, C.F. Zhang
Animal Feed Science and Technology.2022; 283: 115184. CrossRef - Characterization of the bacterial microbiota across the different intestinal segments of the Qinghai semi-fine wool sheep on the Qinghai-Tibetan Plateau
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Animal Bioscience.2021; 34(12): 1921. CrossRef - Multi-Omics Analysis Reveals a Dependent Relationship Between Rumen Bacteria and Diet of Grass- and Grain-Fed Yaks
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Frontiers in Microbiology.2019;[Epub] CrossRef
- Pengujian Potensi Cairan Omasum Sapi untuk Ketercernaan Tiga Jenis Bahan Organik sebagai Sumber Bioetanol Generasi Ke-2
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