Journal of Microbiology

Reviews

Advancements in the production of value-added products via methane biotransformation by methanotrophs: Current status and future perspectives: Ok Kyung Lee, Jong Seok Lee, Yoonyong Yang, Moonsuk Hur, Kyung Jin Lee, Eun Yeol Lee; J. Microbiol. 2025;63(3):e2412024. Published online March 28, 2025; DOI: https://doi.org/10.71150/jm.2412024

1,423 View
137 Download
1 Crossref

Methane gas is recognized as a promising carbon substrate for the biosynthesis of value-added products due to its abundance and low price. Methanotrophs utilized methane as their sole source of carbon and energy, thus they can serve as efficient biocatalysts for methane bioconversion. Methanotrophs-catalyzed microbial bioconversion offer numerous advantages, compared to chemical processes. Current indirect chemical conversions of methane suffer from their energy-intensive processes and high capital expenditure. Methanotrophs can be cell factories capable of synthesizing various value-added products from methane such as methanol, organic acids, ectoine, polyhydroxyalkanoates, etc. However, the large-scale commercial implementation using methanotrophs remains a formidable challenge, primarily due to limitations in gas-liquid mass transfer and low metabolic capacity. This review explores recent advancements in methanotroph research, providing insights into their potential for enabling methane bioconversion.

Citations

Citations to this article as recorded by

Advancing microbial engineering through synthetic biology
Ki Jun Jeong
Journal of Microbiology.2025; 63(3): e2503100. CrossRef

Advancements in dengue vaccines: A historical overview and pro-spects for following next-generation candidates: Kai Yan, Lingjing Mao, Jiaming Lan, Zhongdang Xiao; J. Microbiol. 2025;63(2):e2410018. Published online February 27, 2025; DOI: https://doi.org/10.71150/jm.2410018

11,892 View
418 Download
4 Web of Science
4 Crossref

Abstract PDF

Dengue, caused by four serotypes of dengue viruses (DENV-1 to DENV-4), is the most prevalent and widely mosquito-borne viral disease affecting humans. Dengue virus (DENV) infection has been reported in over 100 countries, and approximately half of the world's population is now at risk. The paucity of universally licensed DENV vaccines highlights the urgent need to address this public health concern. Action and attention to antibody-dependent enhancement increase the difficulty of vaccine development. With the worsening dengue fever epidemic, Dengvaxia^® (CYD-TDV) and Qdenga^® (TAK-003) have been approved for use in specific populations in affected areas. However, these vaccines do not provide a balanced immune response to all four DENV serotypes and the vaccination cannot cover all populations. There is still a need to develop a safe, broad-spectrum, and effective vaccine to address the increasing number of dengue cases worldwide. This review provides an overview of the existing DENV vaccines, as well as potential candidates for future studies on DENV vaccine development, and discusses the challenges and possible solutions in the field.

Citations

Citations to this article as recorded by

Role of c-ABL in DENV-2 Infection and Actin Remodeling in Vero Cells
Grace Paola Carreño-Flórez, Alexandra Milena Cuartas-López, Ryan L. Boudreau, Miguel Vicente-Manzanares, Juan Carlos Gallego-Gómez
International Journal of Molecular Sciences.2025; 26(9): 4206. CrossRef
Crystallographic Fragment Screening of the Dengue Virus Polymerase Reveals Multiple Binding Sites for the Development of Non-nucleoside Antiflavivirals
Manisha Saini, Jasmin C. Aschenbrenner, Francesc Xavier Ruiz, Ashima Chopra, Anu V. Chandran, Peter G. Marples, Blake H. Balcomb, Daren Fearon, Frank von Delft, Eddy Arnold
Journal of Medicinal Chemistry.2025; 68(17): 18356. CrossRef
Understanding the Diversity of Dengue Serotypes: Impacts on Public Health and Disease Control
Gopinath Ramalingam, Madhumitha Patchaiyappan, M. Arundadhi, Krishnapriya Subramani, A. Dhanasezhian, Sucila Thangam Ganesan
The Journal of Medical Research.2025; 11(4): 69. CrossRef
Dengue Fever Resurgence in Iran: An Integrative Review of Causative Factors and Control Strategies
Seyed Hassan Nikookar, Saeedeh Hoseini, Omid Dehghan, Mahmoud Fazelidinan, Ahmadali Enayati
Tropical Medicine and Infectious Disease.2025; 10(11): 309. CrossRef

Journal Articles

Tubulysin Production by the Dead Cells of Archangium gephyra KYC5002: Seohui Park, Chaehyeon Park, Yujin Ka, Kyungyun Cho; J. Microbiol. 2024;62(6):463-471. Published online June 13, 2024; DOI: https://doi.org/10.1007/s12275-024-00130-3

243 View
5 Download

Abstract PDF: Archangium gephyra KYC5002 produces tubulysins during the death phase. In this study, we aimed to determine whether dead cells produce tubulysins. Cells were cultured for three days until the verge of the death phase, disrupted via ultrasonication, incubated for 2 h, and examined for tubulysin production. Non-disrupted cells produced 0.14 mg/L of tubulysin A and 0.11 mg/L of tubulysin B. Notably, tubulysin A production was increased by 4.4-fold to 0.62 mg/L and that of tubulysin B was increased by 6.7-fold to 0.74 mg/L in the disrupted cells. The same increase in tubulysin production was observed when the cells were killed by adding hydrogen peroxide. However, when the enzymes were inactivated via heat treatment of the cultures at 65 °C for 30 min, no significant increase in tubulysin production due to cell death was observed. Reverse transcription-quantitative polymerase chain reaction analysis of tubB mRNA revealed that the expression levels of tubulysin biosynthetic enzyme genes increased during the death phase compared to those during the vegetative growth phase. Our findings suggest that A. gephyra produces biosynthetic enzymes and subsequently uses them for tubulysin production in the cell death phase or during cell lysis by predators.

Tn5 Transposon-based Mutagenesis for Engineering Phage-resistant Strains of Escherichia coli BL21 (DE3): Yinfeng Wang , Guanhua Xuan , Houqi Ning , Jiuna Kong , Hong Lin , Jingxue Wang; J. Microbiol. 2023;61(5):559-569. Published online May 22, 2023; DOI: https://doi.org/10.1007/s12275-023-00048-2

296 View
1 Download
2 Web of Science
2 Crossref

Abstract PDF

Escherichia coli is a preferred strain for recombinant protein production, however, it is often plagued by phage infection during experimental studies and industrial fermentation. While the existing methods of obtaining phage-resistant strains by natural mutation are not efficient enough and time-consuming. Herein, a high-throughput method by combining Tn5 transposon mutation and phage screening was used to produce Escherichia coli BL21 (DE3) phage-resistant strains. Mutant strains PR281-7, PR338-8, PR339-3, PR340-8, and PR347-9 were obtained, and they could effectively resist phage infection. Meanwhile, they had good growth ability, did not contain pseudolysogenic strains, and were controllable. The resultant phage-resistant strains maintained the capabilities of producing recombinant proteins since no difference in mCherry red fluorescent protein expression was found in phage-resistant strains. Comparative genomics showed that PR281-7, PR338-8, PR339-3, and PR340-8 mutated in ecpE, nohD, nrdR, and livM genes, respectively. In this work, a strategy was successfully developed to obtain phage-resistant strains with excellent protein expression characteristics by Tn5 transposon mutation. This study provides a new reference to solve the phage contamination problem.

Citations

Citations to this article as recorded by

Establishment and improvement of genetic manipulation tools for Fusobacterium nucleatum
Zhiwei Guan, Hailong Wang, Qiang Feng
Engineering Microbiology.2025; 5(1): 100192. CrossRef
Antiviral effects of heme oxygenase-1 against canine coronavirus and canine influenza virus in vitro
Jae-Hyeong Kim, Dong-Hwi Kim, Kyu-Beom Lim, Joong-Bok Lee, Seung-Yong Park, Chang-Seon Song, Sang-Won Lee, Dong-Hun Lee, Do-Geun Kim, Hun-Young Yoon, In-Soo Choi
Journal of Microbiology.2025; 63(5): e2501029. CrossRef

CXCL12/CXCR4 Axis is Involved in the Recruitment of NK Cells by HMGB1 Contributing to Persistent Airway Inflammation and AHR During the Late Stage of RSV Infection: Sisi Chen , Wei Tang , Guangyuan Yu , Zhengzhen Tang , Enmei Liu; J. Microbiol. 2023;61(4):461-469. Published online February 13, 2023; DOI: https://doi.org/10.1007/s12275-023-00018-8

364 View
0 Download
9 Web of Science
9 Crossref

Abstract PDF

We previously showed that both high-mobility group box-1 (HMGB1) and natural killer (NK) cells contribute to respiratory syncytial virus (RSV)-induced persistent airway inflammation and airway hyperresponsiveness (AHR). Meanwhile, Chemokine (C-X-C motif) ligand 12 (CXCL12) and its specific receptor (chemokine receptor 4, CXCR4) play important roles in recruitment of immune cells. CXCL12 has been reported to form a complex with HMGB1 that binds to CXCR4 and increases inflammatory cell migration. The relationship between HMGB1, NK cells and chemokines in RSV-infected model remains unclear. An anti-HMGB1 neutralizing antibody and inhibitor of CXCR4 (AMD3100) was administered to observe changes of NK cells and airway disorders in nude mice and BALB/c mice. Results showed that the mRNA expression and protein levels of HMGB1 were elevated in late stage of RSV infection and persistent airway inflammation and AHR were diminished after administration of anti-HMGB1 antibodies, with an associated significant decrease in CXCR4+ NK cells. In addition, CXCL12 and CXCR4 were reduced after HMGB1 blockade. Treatment with AMD3100 significantly suppressed the recruitment of NK cells and alleviated the airway disorders. Thus, CXCL12/CXCR4 axis is involved in the recruitment of NK cells by HMGB1, contributing to persistent airway inflammation and AHR during the late stage of RSV infection.

Citations

Citations to this article as recorded by

Exploring Ribosomal Genes as Potential Biomarkers of the Immune Microenvironment in Respiratory Syncytial Virus Infection
Lu Lin, Zenghua Liao, Chaoqian Li
Biochemical Genetics.2025; 63(2): 1839. CrossRef
Damage-associated molecular patterns in viral infection: potential therapeutic targets
Huizhen Tian, Qiong Liu, Xiaomin Yu, Yanli Cao, Xiaotian Huang
Critical Reviews in Microbiology.2025; 51(3): 514. CrossRef
Peptides targeting RAB11A–FIP2 complex inhibit HPIV3, RSV, and IAV replication as broad-spectrum antivirals
Yanliang Jiang, Yongliang Zhao, Jie Deng, Xiaoyan Wu, Jian Li, Dong Guo, Ke Xu, Yali Qin, Mingzhou Chen
Cell & Bioscience.2025;[Epub] CrossRef
Inhibition of the TLR4/RAGE pathway by clearance of extracellular HMGB1 is a potential therapeutic target for radiation-damaged salivary glands
Takashi I, Riho Kanai, Makoto Seki, Hideki Agata, Hideaki Kagami, Hiroshi Murata, Izumi Asahina, Simon D. Tran, Yoshinori Sumita
Regenerative Therapy.2025; 30: 476. CrossRef
Respiratory Syncytial Virus (RSV): A Comprehensive Overview From Basic Biology to Clinical Prevention and Control
Jie Shi, Xiya Huang, Chunjun Ye, Yishan Lu, Yanyan Liu, Yuquan Wei, Xiawei Wei
Medicinal Research Reviews.2025;[Epub] CrossRef
DAMPs in immunosenescence and cancer
Fangquan Chen, Hu Tang, Xiutao Cai, Junhao Lin, Rui Kang, Daolin Tang, Jiao Liu
Seminars in Cancer Biology.2024; 106-107: 123. CrossRef
Advancements in Stimulus-Responsive Co-Delivery Nanocarriers for Enhanced Cancer Immunotherapy
Meng-Ru Zhang, Lin-Lin Fang, Yang Guo, Qin Wang, You-Jie Li, Hong-Fang Sun, Shu-Yang Xie, Yan Liang
International Journal of Nanomedicine.2024; Volume 19: 3387. CrossRef
Immunomodulatory markers and therapies for the management of infant respiratory syncytial virus infection
Ricardo A. Loaiza, Mónica A. Farías, Catalina A. Andrade, Mario A. Ramírez, Linmar Rodriguez-Guilarte, José T. Muñóz, Pablo A. González, Susan M. Bueno, Alexis M. Kalergis
Expert Review of Anti-infective Therapy.2024; 22(8): 631. CrossRef
Activin A, a Novel Chemokine, Induces Mouse NK Cell Migration via AKT and Calcium Signaling
Yunfeng Wang, Zhonghui Liu, Yan Qi, Jiandong Wu, Boyang Liu, Xueling Cui
Cells.2024; 13(9): 728. CrossRef

Phenotypic and genomic characteristics of Brevibacterium zhoupengii sp. nov., a novel halotolerant actinomycete isolated from bat feces: Yuyuan Huang , Lingzhi Dong , Jian Gong , Jing Yang , Shan Lu , Xin-He Lai , Dong Jin , Qianni Huang , Ji Pu , Liyun Liu , Jianguo Xu; J. Microbiol. 2022;60(10):977-985. Published online August 19, 2022; DOI: https://doi.org/10.1007/s12275-022-2134-8

334 View
0 Download
4 Web of Science
5 Crossref

Abstract PDF

Two strictly aerobic, Gram-staining-positive, non-spore-forming, regular rod-shaped (approximately 0.7 × 1.9 mm) bacteria (HY170T and HY001) were isolated from bat feces collected from Chongzuo city, Guangxi province (22°20􍿁54􍿂N, 106°49􍿁20􍿂E, July 2011) and Chuxiong Yi Autonomous Prefecture, Yunnan province (25°09􍿁10􍿂N, 102°04􍿁39􍿂E, October 2013) of South China, respectively. Optimal growth is obtained at 25–28°C (range, 4–32°C) on BHI-5% sheep blood plate with pH 7.5 (range, 5.0–10.0) in the presence of 0.5– 1.0% NaCl (w/v) (range, 0–15% NaCl [w/v]). The phylogenetic and phylogenomic trees based respectively on the 16S rRNA gene and 845 core gene sequences revealed that the two strains formed a distinct lineage within the genus Brevibacterium, most closely related to B. aurantiacum NCDO 739T (16S rRNA similarity, both 98.5%; dDDH, 46.7–46.8%; ANI, 91.9–92.1%). Strain HY170T contained MK-8(H2), diphosphatidylglycerol (DPG) and phosphatidylglycerol (PG), galactose and ribose as the predominant menaquinone, major polar lipids, and main sugars in the cell wall teichoic acids, respectively. The meso-diaminopimelic acid (meso-DAP) was the diagnostic diamino acid of the peptidoglycan found in strain HY170T. Anteiso-C15:0 and anteiso-C17:0 were the major fatty acids (> 10%) of strains HY170T and HY001, with anteiso-C17:1A predominant in strain HY170T but absent in strain HY001. Mining the genomes revealed the presence of secondary metabolite biosynthesis gene clusters encoding for non-alpha poly-amino acids (NAPAA), ectoine, siderophore, and terpene. Based on results from the phylogenetic, chemotaxonomic and phenotypic analyses, the two strains could be classified as a novel species of the genus Brevibacterium, for which the name Brevibacterium zhoupengii sp. nov. is proposed (type strain HY170T = CGMCC 1.18600T = JCM 34230T).

Citations

Citations to this article as recorded by

Comparative metagenomics of wild and cultivated Fragaria chiloensis reveals major rhizosphere microbiome shifts linked to stress adaptation
Carlos Farkas, Matías Guerra, Adan Andreu Heredia, Jean Franco Castro
Current Research in Microbial Sciences.2025; 9: 100460. CrossRef
Antagonistic Behavior of Streptomyces chartreuse against Pathogenic Bacteria in Ricinus communis L.
Bhoomi N. Patel, Priti Patel, Gayatri Patel
Biosciences Biotechnology Research Asia.2024; 21(1): 185. CrossRef
Functional genomics and taxonomic insights into heavy metal tolerant novel bacterium Brevibacterium metallidurans sp. nov. NCCP-602T isolated from tannery effluent in Pakistan
Sadia Manzoor, Saira Abbas, Sobia Zulfiqar, Hong-Chuan Wang, Min Xiao, Wen-Jun Li, Muhammad Arshad, Iftikhar Ahmed
Antonie van Leeuwenhoek.2024;[Epub] CrossRef
Description of Ornithinimicrobium cryptoxanthini sp. nov., a Novel Actinomycete Producing β-cryptoxanthin Isolated from the Tongtian River Sediments
Yuyuan Huang, Yifan Jiao, Sihui Zhang, Yuanmeihui Tao, Suping Zhang, Dong Jin, Ji Pu, Liyun Liu, Jing Yang, Shan Lu
Journal of Microbiology.2023; 61(4): 379. CrossRef
Morphological and genomic characteristics of two novel actinomycetes, Ornithinimicrobium sufpigmenti sp. nov. and Ornithinimicrobium faecis sp. nov. isolated from bat faeces (Rousettus leschenaultia and Taphozous perforates)
Yuyuan Huang, Suping Zhang, Yuanmeihui Tao, Jing Yang, Shan Lu, Dong Jin, Ji Pu, Wenbo Luo, Han Zheng, Liyun Liu, Jia-fu Jiang, Jianguo Xu
Frontiers in Cellular and Infection Microbiology.2023;[Epub] CrossRef

Characterization of a cold-adapted debranching enzyme and its role in glycogen metabolism and virulence of Vibrio vulnificus MO6-24/O: Ah-Reum Han , Haeyoung Kim , Jong-Tae Park , Jung-Wan Kim; J. Microbiol. 2022;60(4):375-386. Published online February 14, 2022; DOI: https://doi.org/10.1007/s12275-022-1507-3

345 View
0 Download
5 Web of Science
5 Crossref

Abstract PDF

Vibrio vulnificus MO6-24/O has three genes annotated as debranching enzymes or pullulanase genes. Among them, the gene encoded by VVMO6_03032 (vvde1) shares a higher similarity at the amino acid sequence level to the glycogen debranching enzymes, AmyX of Bacillus subtilis (40.5%) and GlgX of Escherichia coli (55.5%), than those encoded by the other two genes. The vvde1 gene encoded a protein with a molecular mass of 75.56 kDa and purified Vvde1 efficiently hydrolyzed glycogen and pullulan to shorter chains of maltodextrin and maltotriose (G3), respectively. However, it hydrolyzed amylopectin and soluble starch far less efficiently, and β-cyclodextrin (β-CD) only rarely. The optimal pH and temperature of Vvde1 was 6.5 and 25°C, respectively. Vvde1 was a cold-adapted debranching enzyme with more than 60% residual activity at 5°C. It could maintain stability for 2 days at 25°C and 1 day at 35°C, but it destabilized drastically at 40°C. The Vvde1 activity was inhibited considerably by Cu2+, Hg2+, and Zn2+, while it was slightly enhanced by Co2+, Ca2+, Ni2+, and Fe2+. The vvde1 knock-out mutant accumulated more glycogen than the wild-type in media supplemented with 1.0% maltodextrin; however, the side chain length distribution of glycogen was similar to that of the wild-type except G3, which was much more abundant in the mutant. Therefore, Vvde1 seemed to debranch glycogen with the degree of polymerization 3 (DP3) as the specific target branch length. Virulence of the pathogen against Caenorhabditis elegans was attenuated significantly by the vvde1 mutation. These results suggest that Vvde1 might be a unique glycogen debranching enzyme that is involved in both glycogen utilization and shaping of glycogen molecules, and contributes toward virulence of the pathogen.

Citations

Citations to this article as recorded by

Characterization of glycogen-related glycoside hydrolase glgX and glgB from Klebsiella pneumoniae and their roles in biofilm formation and virulence
Xinyue Liu, Jialin Li, Ruibing Wu, Liping Bai
Frontiers in Cellular and Infection Microbiology.2024;[Epub] CrossRef
Function of the mdxR gene encoding a novel regulator for carbohydrate metabolism and sporulation in Bacillus subtilis 168
Tianshi Wang, Jung-Wan Kim
Archives of Microbiology.2023;[Epub] CrossRef
Identification of a novel cyclomaltodextrinase annotated as a neopullulanase in the genome of Bacillus cereus
Bo-Ram Park, Davoodbasha MubarakAli, Jung-Wan Kim
Archives of Microbiology.2023;[Epub] CrossRef
Functional conservation of specialized ribosomes bearing genome-encoded variant rRNAs in Vibrio species
Younkyung Choi, Eunkyoung Shin, Minho Lee, Ji-Hyun Yeom, Kangseok Lee, Bashir Sajo Mienda
PLOS ONE.2023; 18(12): e0289072. CrossRef
Functional characterization of maltodextrin glucosidase for maltodextrin and glycogen metabolism in Vibrio vulnificus MO6-24/O
Hye-Young Kim, MubarakAli Davoodbasha, Jung-Wan Kim
Archives of Microbiology.2022;[Epub] CrossRef

Potent antibacterial and antibiofilm activities of TICbf-14, a peptide with increased stability against trypsin: Liping Wang , Xiaoyun Liu , Xinyue Ye , Chenyu Zhou , Wenxuan Zhao , Changlin Zhou , Lingman Ma; J. Microbiol. 2022;60(1):89-99. Published online December 29, 2021; DOI: https://doi.org/10.1007/s12275-022-1368-9

356 View
0 Download
2 Web of Science
2 Crossref

Abstract PDF

The poor stability of peptides against trypsin largely limits their development as potential antibacterial agents. Here, to obtain a peptide with increased trypsin stability and potent antibacterial activity, TICbf-14 derived from the cationic peptide Cbf-14 was designed by the addition of disulfide-bridged hendecapeptide (CWTKSIPPKPC) loop. Subsequently, the trypsin stability and antimicrobial and antibiofilm activities of this peptide were evaluated. The possible mechanisms underlying its mode of action were also clarified. The results showed that TICbf-14 exhibited elevated trypsin inhibitory activity and effectively mitigated lung histopathological damage in bacteria-infected mice by reducing the bacterial counts, further inhibiting the systemic dissemination of bacteria and host inflammation. Additionally, TICbf-14 significantly repressed bacterial swimming motility and notably inhibited biofilm formation. Considering the mode of action, we observed that TICbf-14 exhibited a potent membrane-disruptive mechanism, which was attributable to its destructive effect on ionic bridges between divalent cations and LPS of the bacterial membrane. Overall, TICbf-14, a bifunctional peptide with both antimicrobial and trypsin inhibitory activity, is highly likely to become an ideal candidate for drug development against bacteria.

Citations

Citations to this article as recorded by

Modified polymeric biomaterials with antimicrobial and immunomodulating properties
Katarzyna Szałapata, Mateusz Pięt, Martyna Kasela, Marcin Grąz, Justyna Kapral-Piotrowska, Aleksandra Mordzińska-Rak, Elżbieta Samorek, Paulina Pieniądz, Jolanta Polak, Monika Osińska-Jaroszuk, Roman Paduch, Bożena Pawlikowska-Pawlęga, Anna Malm, Anna Jar
Scientific Reports.2024;[Epub] CrossRef
Epinecidin-1, a marine antifungal peptide, inhibits Botrytis cinerea and delays gray mold in postharvest peaches
Li Fan, Yingying Wei, Yi Chen, Shu Jiang, Feng Xu, Chundan Zhang, Hongfei Wang, Xingfeng Shao
Food Chemistry.2023; 403: 134419. CrossRef

Devosia rhizoryzae sp. nov., and Devosia oryziradicis sp. nov., novel plant growth promoting members of the genus Devosia, isolated from the rhizosphere of rice plants: Geeta Chhetri , Inhyup Kim , Minchung Kang , Jiyoun Kim , Yoonseop So , Taegun Seo; J. Microbiol. 2022;60(1):1-10. Published online November 26, 2021; DOI: https://doi.org/10.1007/s12275-022-1474-8

608 View
0 Download
43 Web of Science
46 Crossref

Abstract PDF

Two novel Gram-negative, aerobic, asporogenous, motile, rodshaped, orange and white pigmented, designated as LEGU1T and G19T, were isolated from the roots of rice plants, collected from Goyang, South Korea. Phylogenetic analysis based on their 16S rRNA gene sequences revealed that they belonged to the genus Devosia and formed a different lineage and clusters with different members of the genus Devosia. These strains shared common chemotaxonomic features. In particular, they had Q-10 as the sole quinone, phosphatidylglycerol, diphosphatidylglycerol as the principal polar lipids and C16:0, C18:1 ω7c 11-methyl and summed feature 8 (comprising C18:1 ω7c/ C18:1 ω6c) as the main fatty acids. The draft genome sequences of strains LEGU1T and G19T were 3,524,978 and 3,495,520 bp in size, respectively. Their average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values were 72.8–81.9% and 18.7–25.1%, respectively, with each other and type strains of related species belonging to the genus Devosia, suggesting that these two strains represent novel species. The G + C content of strains LEGU1T and G19T were 62.1 and 63.8%, respectively. Of the two strains, only LEGU1T produced carotenoid and flexirubin-type pigment. Both strains produced siderophore and indole acetic acid (IAA) in the presence of L-tryptophan. Siderophore biosynthesis genes, auxin responsive genes and tryptophan biosynthesis genes were present in their genomes. The present study aimed to determine the detailed taxonomic positions of the strains using the modern polyphasic approach. Based on the results of polyphasic analysis, these strains are suggested to be two novel bacterial species within the genus Devosia. The proposed names are D. rhizoryzae sp. nov., and Devosia oryziradicis sp. nov., respectively. The plant growth promoting effects of these strains suggest that they can be exploited to improve rice crop productivity. The type strain of D. rhizoryzae is LEGU1T (KCTC 82712T = NBRC 114485T) and D. oryziradicis is G19T (KCTC 82688T = NBRC 114842T).

Citations

Citations to this article as recorded by

Chitosan hydrogel microspheres loaded with Bacillus subtilis promote plant growth and reduce chromium uptake
Xia Wang, Zhonglin Yang, Qin Zeng, Xueli Wang, Song Liu, Engui Wang, Yangjin Wu, Yinan Zeng, Maolin He, Yan Wang, Guoqiang Shen, Xuemin Jing, Ren Ping, Xin Zhang, Baodong Chen
International Journal of Biological Macromolecules.2025; 286: 138401. CrossRef
Organic Manure Amendment Fortifies Soil Health by Enriching Beneficial Metabolites and Microorganisms and Suppressing Plant Pathogens
Buqing Wei, Jingjing Bi, Xueyan Qian, Chang Peng, Miaomiao Sun, Enzhao Wang, Xingyan Liu, Xian Zeng, Huaqi Feng, Alin Song, Fenliang Fan
Agronomy.2025; 15(2): 429. CrossRef
Disruption of the endogenous indole glucosinolate pathway impacts the Arabidopsis thaliana root exudation profile and rhizobacterial community
Daniel Acuña, Molly C. Bletz, Joelle Sasse, Shirley A. Micallef, Suzanne Kosina, Benjamin P. Bowen, Trent R. Northen, Adán Colón-Carmona
Rhizosphere.2025; 33: 101046. CrossRef
Devosia alba sp. nov., a potential nitrite-reducing bacterium isolated from a mudflat
Sha-sha Qiu, Hong-zhe Hu, Yi-fan Zhuo, Yue Su, Yu-si Yang, Tao Wang, Qi-yun Zheng, Xin-yi Huang, Ailina Yilibao, Can Chen
Current Microbiology.2025;[Epub] CrossRef
Stable soil moisture promotes shoot performance and shapes the root-rhizosphere microbiome
Dichuan Liu, Zhuan Wang, Guolong Zhu, Aiguo Xu, Renlian Zhang, Ray Bryant, Patrick J. Drohan, Huaiyu Long, Viola Willemsen
Agricultural Water Management.2025; 310: 109354. CrossRef
Differentiation and Interconnection of the Bacterial Community Associated with Silene nigrescens Along the Soil-To-Plant Continuum in the Sub-Nival Belt of the Qiangyong Glacier
Wangchen Sonam, Yongqin Liu, Luming Ren
Plants.2025; 14(8): 1190. CrossRef
Microbiome-Mediated Mechanisms Regulating Adaptability to Iron Deficiency in the Intercropping System of Soybean and Maize
Wuyu Liu, Guoqing Wang, Shiming Wen, Yiwen Zhao, Yuxin Ding, Baihui Yao, Zhelin Wang, Duntao Shu, Gehong Wei, Juan Chen, Zhouping Shangguan
Agronomy.2025; 15(2): 286. CrossRef
Exploring the biocrust microbial diversity in calanchi areas
Gaetano GUIDA, Alessio NICOSIA, Vincenzo PALMERI, Elena FRANCIOSI, Giancarlo MOSCHETTI, Luca SETTANNI, Vito FERRO
Pedosphere.2025;[Epub] CrossRef
Wheat rhizospheric microbial network's consistent modular pattern in improved lunar soil simulant accompanied with fungal withdrawal
Boyang Liao, Zhikai Yao, Jiajie Feng, Hong Liu
Acta Astronautica.2025; 235: 475. CrossRef
Core microbiome and microbial community characteristics of three ecological niches contribute to the growth of Leymus chinensis
Peiran Guo, Bingbing Jia, Jiaying Lin, Chengyan Lu, Tai Liu, Baihui Hao, Yiwen Xv, Qian Wang, Yvnong Chen, Wei Guo, Frank Yonghong Li
Plant and Soil.2025;[Epub] CrossRef
Bacillus-Based Biofertilizer Influences Soil Microbiome to Enhance Soil Health for Sustainable Agriculture
Fung Ling Ng, Tsung-Chun Lin, Erick Wang, Tzong Yi Lee, Guan Ting Chen, Jiunn-Feng Su, Wen Liang Chen
Sustainability.2025; 17(14): 6293. CrossRef
Physicochemical, microbial, and microbiome dynamics in winery waste composting
Gregoria Mitropoulou, Ioanna Karapantzou, Ioanna Prapa, Dimitra Papanikolaou, Vasileios Charovas, Yiannis Kourkoutas
Environmental Science and Pollution Research.2025; 32(30): 17952. CrossRef
Variations in plant’s cry for help evidenced by modifications of rice root microbiota induced by blast or brown spot diseases
Léa Jobert, Gabriel Boulard, Nicolas Poncelet, Henri Adreit, Gilles Béna, Lionel Moulin
Environmental Microbiome.2025;[Epub] CrossRef
Dietary modulation of gut microbiota and functional enzymes in savannah honey bees (Apis mellifera scutellata Lepeletier)
Nolwandle N. Khumalo, Linda U. Obi, Abdullahi A. Yusuf, Rasheed A. Adeleke
Applied Microbiology and Biotechnology.2025;[Epub] CrossRef
Pseudomonassp. HYQ2 enhances cadmium phytoextraction byPhytolacca icosandraL. through interacting with other plant growth-promoting rhizobacteria
Yanshuang Li, Jingya Yang, Yingqi Huang, Na Hu, Xumei Huang, Haisheng Tang, Josy Karel Ngueuyim Nono, Jianchu Xu, Yishu Deng, Xiong Li
Plant and Soil.2025;[Epub] CrossRef
Exploring the Impact of Coconut Peat and Vermiculite on the Rhizosphere Microbiome of Pre-Basic Seed Potatoes under Soilless Cultivation Conditions
Kan Yan, Yanni Ma, Songming Bao, Wandi Li, Yunjiao Wang, Chao Sun, Xin Lu, Juan Ran
Microorganisms.2024; 12(3): 584. CrossRef
Phytoremediation with application of anaerobic fermentation residues regulate the assembly of ecological clusters within co-occurrence network in ionic rare earth tailings soil: A pot experiment
Liumeng Chen, Shasha Chen, Tao Xing, Yun Long, Zhi Wang, Xiaoying Kong, An Xu, Qiangjian Wu, Yongmin Sun
Environmental Pollution.2024; 340: 122790. CrossRef
Devosia lacusdianchii sp. nov., an attached bacterium inhibited by metabolites from its symbiotic Microcystis
Qing-Lin Deng, Yao Xiao, Ru Jia, Xin Xie, Le Wang, Xin Wang, Jian-Yuan Yang, Qi-Gen Guo, Bing-Huo Zhang
Antonie van Leeuwenhoek.2024;[Epub] CrossRef
A tripartite bacterial-fungal-plant symbiosis in the mycorrhiza-shaped microbiome drives plant growth and mycorrhization
Changfeng Zhang, Marcel G. A. van der Heijden, Bethany K. Dodds, Thi Bich Nguyen, Jelle Spooren, Alain Valzano-Held, Marco Cosme, Roeland L. Berendsen
Microbiome.2024;[Epub] CrossRef
Bacillus altitudinis LZP02 improves rice growth by reshaping the rhizosphere microbiome
Weina Chang, Wenjing Chen, Yunlong Hu, Zhigang Wang
Plant and Soil.2024; 498(1-2): 279. CrossRef
Pasture-crop rotations modulate the soil and rhizosphere microbiota and preserve soil structure supporting oat cultivation in the Pampa biome
Victoria Cerecetto, Carolina Leoni, Stephanie D. Jurburg, Ioannis D. Kampouris, Kornelia Smalla, Doreen Babin
Soil Biology and Biochemistry.2024; 195: 109451. CrossRef
Combined effects of azoxystrobin and oxytetracycline on rhizosphere microbiota of Arabidopsis thaliana
Yuke Zhu, Mingjing Ke, Zhitao Yu, Chaotang Lei, Meng Liu, Yaohui Yang, Tao Lu, Ning-Yi Zhou, W.J.G.M. Peijnenburg, Tao Tang, Haifeng Qian
Environment International.2024; 186: 108655. CrossRef
Addition of Chicken Litter Compost Changes Bacteriobiome in Fallow Soil
Natalia Naumova, Pavel Barsukov, Olga Baturina, Olga Rusalimova, Marsel Kabilov
Applied Microbiology.2024; 4(3): 1268. CrossRef
Insights into the interactions of plant-associated bacteria and their role in the transfer of antibiotic resistance genes from soil to plant
Yanping Shen, Baiyu Zhang, Ye Yao, Hanbo Wang, Zhilu Chen, Anjing Hao, Ping Guo
Journal of Hazardous Materials.2024; 480: 135881. CrossRef
Devosia oryzisoli sp. nov., a novel moderately halotolerant bacterium isolated from the roots of rice plants and genome mining revealed the biosynthesis potential as plant growth promoter
Geeta Chhetri, Inhyup Kim, Taegun Seo
Antonie van Leeuwenhoek.2023; 116(3): 231. CrossRef
Distinct rhizobacteria recruitment under copper stress contributes to the different copper-accumulating capacities of two Elsholtzia species (Lamiaceae)
Xiong Li, Gaojuan Zhao, Yingqi Huang, Boqun Li
Plant and Soil.2023; 489(1-2): 295. CrossRef
Effects of above ground pathogen infection and fungicide application on the root-associated microbiota of apple saplings
Maximilian Fernando Becker, A. Michael Klueken, Claudia Knief
Environmental Microbiome.2023;[Epub] CrossRef
Planobacterium oryzisoli sp. nov., a novel bacterium isolated from roots of rice plant
Geeta Chhetri, Inhyup Kim, Sunho Park, Yonghee Jung, Taegun Seo
Archives of Microbiology.2023;[Epub] CrossRef
International Committee on Systematics of Prokaryotes Subcommittee on the Taxonomy of Rhizobia and Agrobacteria. Minutes of the closed annual meeting: videoconference on 11 October 2022 followed by online discussion until 31 December 2022
Seyed Abdollah Mousavi, J. Peter W. Young
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
Cooperative Action of Fulvic Acid and Bacillus paralicheniformis Ferment in Regulating Soil Microbiota and Improving Soil Fertility and Plant Resistance to Bacterial Wilt Disease
Xiuyun Zhao, Di Zhu, Jun Tan, Rui Wang, Gaofu Qi, Olubukola Oluranti Babalola
Microbiology Spectrum.2023;[Epub] CrossRef
Paraburkholderia tagetis sp. nov., a novel species isolated from roots of Tagetes patula enhances the growth and yield of Solanum lycopersicum L. (tomato)
Geeta Chhetri, Inhyup Kim, Jiyoun Kim, Yoonseop So, Sunho Park, Yonghee Jung, Taegun Seo
Frontiers in Microbiology.2023;[Epub] CrossRef
Insight into the plant-associated bacterial interactions: Role for plant arsenic extraction and carbon fixation
Yibo Liu, Baiyu Zhang, Ye Yao, Bo Wang, Yiqi Cao, Yanping Shen, Xiaohui Jia, Fukai Xu, Ziwei Song, Chengpeng Zhao, HongJie Gao, Ping Guo
Science of The Total Environment.2023; 894: 164960. CrossRef
Ideonella oryzae sp. nov., isolated from soil, and Spirosoma liriopis sp. nov., isolated from fruits of Liriope platyphylla
Yonghee Jung, Geeta Chhetri, Inhyup Kim, Yoonseop So, Sunho Park, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
Seasonal Shifts in Bacterial Community Structures in the Lateral Root of Sugar Beet Grown in an Andosol Field in Japan
Seishi Ikeda, Kazuyuki Okazaki, Hiroyuki Takahashi, Hirohito Tsurumaru, Kiwamu Minamisawa
Microbes and Environments.2023; 38(1): n/a. CrossRef
Effects of different cultivation media on root bacterial community characteristics of greenhouse tomatoes
Xinjian Zhang, Qiang Li, Fangyuan Zhou, Susu Fan, Xiaoyan Zhao, Chi Zhang, Kun Yan, Xiaoqing Wu
Frontiers in Microbiology.2023;[Epub] CrossRef
Neoroseomonas alba sp. nov., Neoroseomonas nitratireducens sp. nov., Paraoseomonas indoligenes sp. nov and Paraoseomonas baculiformis sp. nov., isolated from the rhizosphere of paddy soil
Yoonseop So, Geeta Chhetri, Inhyup Kim, Jiyoun Kim, Sunho Park, Yonghee Jung, Taegun Seo
Antonie van Leeuwenhoek.2023; 116(10): 1009. CrossRef
Soil amendment with insect exuviae causes species-specific changes in the rhizosphere bacterial community of cabbage plants
Max Wantulla, Joop J.A. van Loon, Marcel Dicke
Applied Soil Ecology.2023; 188: 104854. CrossRef
Validation List no. 213. Valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
Paenibacillus agilis sp. nov., Paenibacillus cremeus sp. nov. and Paenibacillus terricola sp. nov., isolated from rhizosphere soils
Jiyoun Kim, Geeta Chhetri, Inhyup Kim, Yoonseop So, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
An Isolated Arthrobacter sp. Enhances Rice (Oryza sativa L.) Plant Growth
Geeta Chhetri, Inhyup Kim, Minchung Kang, Yoonseop So, Jiyoun Kim, Taegun Seo
Microorganisms.2022; 10(6): 1187. CrossRef
Interactions between Soil Bacterial Diversity and Plant-Parasitic Nematodes in Soybean Plants
Felipe Martins do Rêgo Barros, Alexandre Pedrinho, Lucas William Mendes, Caio César Gomes Freitas, Fernando Dini Andreote, Karyn N. Johnson
Applied and Environmental Microbiology.2022;[Epub] CrossRef
Plant growth promoting bacteria drive food security
Fatimah K. Al-Tammar, A. Y. Z. Khalifa
Brazilian Journal of Biology.2022;[Epub] CrossRef
Chryseobacterium tagetis sp. nov., a plant growth promoting bacterium with an antimicrobial activity isolated from the roots of medicinal plant (Tagetes patula)
Geeta Chhetri, Inhyup Kim, Jiyoun Kim, Yoonseop So, Taegun Seo
The Journal of Antibiotics.2022; 75(6): 312. CrossRef
International Committee on Systematics of Prokaryotes, Subcommittee on the taxonomy of Rhizobia and Agrobacteria, minutes of the annual meeting by videoconference, 5 July 2021, followed by online discussion until 31 December 2021
Seyed Abdollah Mousavi, J. Peter W. Young
International Journal of Systematic and Evolutionary Microbiology.2022;[Epub] CrossRef
Isolation and characterization of Klebsiella oxytoca from the rhizosphere of Lotus corniculatus and its biostimulating features
A. Y. Z. Khalifa, M. F. Aldayel
Brazilian Journal of Biology.2022;[Epub] CrossRef
Shaping effects of rice, wheat, maize, and soybean seedlings on their rhizosphere microbial community
Fan Zhang, Nuohan Xu, Zhenyan Zhang, Qi Zhang, Yaohui Yang, Zhitao Yu, Liwei Sun, Tao Lu, Haifeng Qian
Environmental Science and Pollution Research.2022; 30(13): 35972. CrossRef

Brevibacterium limosum sp. nov., Brevibacterium pigmenatum sp. nov., and Brevibacterium atlanticum sp. nov., three novel dye decolorizing actinobacteria isolated from ocean sediments: Shengxiang Pei , Siwen Niu , Fuquan Xie , Wenjing Wang , Shuang Zhang , Gaiyun Zhang; J. Microbiol. 2021;59(10):898-910. Published online September 7, 2021; DOI: https://doi.org/10.1007/s12275-021-1235-0

347 View
0 Download
10 Web of Science
11 Crossref

Abstract PDF

During a study of the marine actinobacterial biodiversity, a large number of Brevibacterium strains were isolated. Of these, five that have relatively low 16S rRNA gene similarity (98.5– 99.3%) with validly published Brevibacterium species, were chosen to determine taxonomic positions. On the basis of 16S rRNA gene sequence analysis and BOX-PCR fingerprinting, strains o2T, YB235T, and WO024T were selected as representative strains. Genomic analyses, including average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH), clearly differentiated the three strains from each other and from their closest relatives, with values ranging from 82.8% to 91.5% for ANI and from 26.7% to 46.5% for dDDH that below the threshold for species delineation. Strains YB235T, WO024T, and o2T all exhibited strong and efficient decolorization activity in congo red (CR) dyes, moderate decolorization activity in toluidine blue (TB) dyes and poor decolorization in reactive blue (RB) dyes. Genes coding for peroxidases and laccases were identified and accounted for these strains’ ability to effectively oxidize a variety of dyes with different chemical structures. Mining of the whole genome for secondary metabolite biosynthesis gene clusters revealed the presence of gene clusters encoding for bacteriocin, ectoine, NRPS, siderophore, T3PKS, terpene, and thiopeptide. Based on the phylogenetic, genotypic and phenotypic data, strains o2T, YB235T and WO024T clearly represent three novel taxa within the genus Brevibacterium, for which the names Brevibacterium limosum sp. nov. (type strain o2T = JCM 33844T = MCCC 1A09961T), Brevibacterium pigmenatum sp. nov. (type strain YB235T = JCM 33843T = MCCC 1A09842T) and Brevibacterium atlanticum sp. nov. (type strain WO024T = JCM 33846T = MCCC 1A16743T) are proposed.

Citations

Citations to this article as recorded by

Brevibacterium litoralis sp. nov., a cellulose-degrading strain isolated from marine surface sediment
Quan Yang, Aolin Zhao, Haifei Liu, Jiawei Li, Shujing Wu, Ying Huang, Jie Weng, Mingguo Jiang, Yi Jiang
Antonie van Leeuwenhoek.2025;[Epub] CrossRef
Comparative analysis of bacterial communities and environmental interactions in seawater and saline-alkali aquaculture ponds for Scylla paramamosain in northern China
Dongping Zhou, Yuanyuan Fu, Lei Liu, Weichuan Lin, Zhibin Lu, Yangfang Ye, Minglei Zhang
Frontiers in Microbiology.2025;[Epub] CrossRef
Functional genomics and taxonomic insights into heavy metal tolerant novel bacterium Brevibacterium metallidurans sp. nov. NCCP-602T isolated from tannery effluent in Pakistan
Sadia Manzoor, Saira Abbas, Sobia Zulfiqar, Hong-Chuan Wang, Min Xiao, Wen-Jun Li, Muhammad Arshad, Iftikhar Ahmed
Antonie van Leeuwenhoek.2024;[Epub] CrossRef
Saxibacter everestensis gen. nov., sp. nov., A Novel Member of the Family Brevibacteriaceae, Isolated from the North Slope of Mount Everest
Mao Tian, Shiyu Wu, Wei Zhang, Gaosen Zhang, Xue Yu, Yujie Wu, Puchao Jia, Binglin Zhang, Tuo Chen, Guangxiu Liu
Journal of Microbiology.2024; 62(4): 277. CrossRef
Omics-Based Approaches in Research on Textile Dye Microbial Decolorization
Anna Jasińska, Aleksandra Walaszczyk, Katarzyna Paraszkiewicz
Molecules.2024; 29(12): 2771. CrossRef
Exploring actinobacteria isolated from coral originated from Tulamben Bali in inhibiting multidrug resistance bacteria
Fajar Hidayaturohman, Aninditia Sabdaningsih, Diah Ayuningrum
Asia Pacific Journal of Molecular Biology and Biotechnology.2024; : 101. CrossRef
Comparative Analysis of How the Fecal Microbiota of Green-Winged Saltator (Saltator similis) Diverge among Animals Living in Captivity and in Wild Habitats
Larissa Caló Zitelli, Gabriela Merker Breyer, Mariana Costa Torres, Luiza de Campos Menetrier, Ana Paula Muterle Varela, Fabiana Quoos Mayer, Cláudio Estêvão Farias Cruz, Franciele Maboni Siqueira
Animals.2024; 14(6): 937. CrossRef
Brevibacterium spongiae sp. nov., isolated from marine sponge Hymeniacidon sp.
Mimi Zhang, Qianqian Song, Jin Sang, Zhiyong Li
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
Exploring the biosynthetic gene clusters in Brevibacterium: a comparative genomic analysis of diversity and distribution
Andrés Cumsille, Néstor Serna-Cardona, Valentina González, Fernanda Claverías, Agustina Undabarrena, Vania Molina, Francisco Salvà-Serra, Edward R.B. Moore, Beatriz Cámara
BMC Genomics.2023;[Epub] CrossRef
Identification, characterization, and genome sequencing of Brevibacterium sediminis MG-1 isolate with growth-promoting properties
Marat Tafkilevich Lutfullin, Guzel Fanisovna Lutfullina, Dasha Sergeevna Pudova, Yaw Abayie Akosah, Elena Ilyasovna Shagimardanova, Semyon Germanovich Vologin, Margarita Rashidovna Sharipova, Ayslu Mirkasymovna Mardanova
3 Biotech.2022;[Epub] CrossRef
Valid publication of new names and new combinations effectively published outside the IJSEM. Validation List no. 203
Aharon Oren, George M. Garrity
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef

Review

Potential of Bacillus velezensis as a probiotic in animal feed: a review: Fatima Khalid , Anam Khalid , Yuechi Fu , Qian Hu , Yunfang Zheng , Salman Khan , Zaigui Wang; J. Microbiol. 2021;59(7):627-633. Published online July 1, 2021; DOI: https://doi.org/10.1007/s12275-021-1161-1

662 View
0 Download
80 Web of Science
76 Crossref

Abstract PDF

Bacillus velezensis is a plant growth-promoting bacterium that can also inhibit plant pathogens. However, based on its properties, it is emerging as a probiotic in animal feed. This review focuses on the potential characteristics of B. velezensis for use as a probiotic in the animal feed industry. The review was conducted by collecting recently published articles from peer-reviewed journals. Google Scholar and PubMed were used as search engines to access published literature. Based on the information obtained, the data were divided into three groups to discuss the (i) probiotic characteristics of B. velezensis, (ii) probiotic potential for fish, and (iii) the future potential of this species to be developed as a probiotic for the animal feed industry. Different strains of B. velezensis isolated from different sources were found to have the ability to produce antimicrobial compounds and have a beneficial effect on the gut microbiota, with the potential to be a candidate probiotic in the animal feed industry. This review provides valuable information about the characteristics of B. velezensis, which can provide researchers with a better understanding of the use of this species in the animal feed industry.

Citations

Citations to this article as recorded by

Probiotic potential of intestinal bacteria isolated from the digestive tract of hybrid snakehead (Channa argus♀ × Channa maculata♂)
Wen-Hao Wu, Yan-Xin Sun, Jia-Hao Zhang, Kun-Ming Huang, Xi-Chao Liu, Shu Tang, Wei Li, Biao Jiang, You-Lu Su
Aquaculture.2025; 598: 742023. CrossRef
Targeted Screening of Fiber Degrading Bacteria with Probiotic Function in Herbivore Feces
Benhao Chen, Yan Zeng, Jie Wang, Mingxia Lei, Baoxing Gan, Zhiqiang Wan, Liqian Wu, Guangrong Luo, Suizhong Cao, Tianwu An, Qibin Zhang, Kangcheng Pan, Bo Jing, Xueqin Ni, Dong Zeng
Probiotics and Antimicrobial Proteins.2025; 17(3): 1473. CrossRef
Effect of Bacillus velezensis T23 solid-state fermentation product on growth, gut and liver health, and gut microbiota of common carp (Cyprinus carpio)
Xingyu Chen, Shubin Liu, Tsegay Teame, Jia Luo, Yao Liu, Qingwen Zhou, Qianwen Ding, Yuanyuan Yao, Yalin Yang, Chao Ran, Zhen Zhang, Zhigang Zhou
Aquaculture.2025; 596: 741733. CrossRef
Probiotic potential of Bacillus Isolates from Polish Bee Pollen and Bee Bread
Karolina Pełka, Ahmer Bin Hafeez, Randy W. Worobo, Piotr Szweda
Probiotics and Antimicrobial Proteins.2025; 17(1): 364. CrossRef
Comprehensive Phenotypic Characterization and Genomic Analysis Unveil the Probiotic Potential of Bacillus velezensis K12
Yingying Tang, Tian Li, Yihong Huang, Liangliang Wu, Xiaobo Liu, Ruichao Yue, Jianmin Yuan
Animals.2025; 15(6): 798. CrossRef
Effects of dietary Bacillus velezensis fermented soybean hull supplementation on antioxidant capacity, suppressing pro-inflammatory, and modulating microbiota composition in broilers
Yung Hao Chen, Yi Chen Li, Shen Chang Chang, Min Jung Lin, Li Jen Lin, Tzu Tai Lee
Poultry Science.2025; 104(4): 104827. CrossRef
The research on the identification, taxonomy, and comparative genomics analysis of nine Bacillus velezensis strains significantly contributes to microbiology, genetics, bioinformatics, and biotechnology
Eduarda Guimarães Sousa, Gabriela Munis Campos, Marcus Vinícius Canário Viana, Gabriel Camargos Gomes, Diego Lucas Neres Rodrigues, Flavia Figueira Aburjaile, Belchiolina Beatriz Fonseca, Max Roberto Batista de Araújo, Mateus Matiuzzi da Costa, Eric Guedo
Frontiers in Microbiology.2025;[Epub] CrossRef
Evaluation of the Probiotic Potential of Bacillus velezensis SNR14-4 Strain from Nile Tilapia Gills Using Genomic and In Vitro Approach
Dinesh Niveditha, Madhavan Sethu, Muhammed N R Rashid, John Deepa, Hariharan Sini, Nevin Kottayath Govindan
Ars Pharmaceutica (Internet).2025; 66(2): 152. CrossRef
Genomic and metabolomic insights into the antimicrobial compounds and plant growth-promoting potential of Bacillus velezensis B115
Jili Chen, Yuzhou Feng, Junchi Ma, Qing Zhang, Yumei Dong, Dongjie Li, Xuemei Duan, Lequn Zhou, Zhihua Li, Ying Yang, Bo Cai, Ze Liu, Jialong Yu, Bo Zhou, Tao Liu
Scientific Reports.2025;[Epub] CrossRef
Production and Characterization of Poly-γ-Glutamic Acid by Bacillus velezensis SDU
Guangyao Guo, Han Wang, Huiyuan Jia, Haiping Ni, Shouying Xu, Cuiying Zhang, Youming Zhang, Yuxia Wu, Qiang Tu
Microorganisms.2025; 13(4): 917. CrossRef
Isolation and characterization of Bacillus velezensis YM1 and its mechanism for zearalenone degradation
Jiangtao Feng, Xiaoyan Du, Yuying Zhang, Yuqing Xie, Yanxia Cong, Junbo He, Weinong Zhang
LWT.2025; 224: 117810. CrossRef
Effects of dietary Bacillus velezensis Y01 supplementation on growth performance, immune function, and cecal microbiota of 1 to 42 days Langya chickens
Lumin Yu, Lingling Zhang, Shanpeng Zhang, Yuzhong Zhao, Zhihao Bi, Junye Xu, Hongcheng Fu, Xinglin Zhang
BMC Microbiology.2025;[Epub] CrossRef
Dietary Probiotic Bacillus subtilis AAHM-BS2360 and Its Postbiotic Metabolites Enhance Growth, Immunity, and Resistance to Edwardsiellosis in Pangasianodon hypophthalmus
Nugroho Wiratama, Pakapon Meachasompop, Benchawan Kumwan, Yosapon Adisornprasert, Prapansak Srisapoome, Phornphan Phrompanya, Patcharapong Thangsunan, Pattanapong Thangsunan, Kanokporn Saenphet, Supap Saenphet, Wararut Buncharoen, Anurak Uchuwittayakul
Antioxidants.2025; 14(6): 629. CrossRef
In Silico and In Vitro Characterization of Bacillus velezensis P45: Screening for a Novel Probiotic Candidate
Carolini Esmeriz da Rosa, Cristian Mauricio Barreto Pinilla, Luiza Dalpiccoli Toss, Adriano Brandelli
Foods.2025; 14(13): 2334. CrossRef
Probiotic Feed Additive with Microbial Beta-Carotene: Development and Properties
Vera V. Yaderets, Natalia V. Karpova, Elena V. Glagoleva, Vakhtang V. Dzhavakhiya
Хранение и переработка сельхозсырья.2025; 33(1): 141. CrossRef
Comparative evaluation of juvenile carp reared using probiotic preparations based on different Bacillus strains
Elena Nikolaevna Ponomareva, Marina Nikolaevna Sorokina, Vadim Grigoriev, Maria Sergeevna Mazanko, Dmitriy Vladimirovich Rudoy
Vestnik of Astrakhan State Technical University. Series: Fishing industry.2025; 2025(2): 83. CrossRef
Probiotic and postbiotic effects of Bacillus velezensis AAHM-BV2354 on boosting immunity, growth performance, antioxidant activity and resistance to Edwardsiella tarda infection in pangasius (Pangasianodon hypophthalmus)
Nugroho Wiratama, Benchawan Kumwan, Pakapon Meachasompop, Yosapon Adisornprasert, Prapansak Srisapoome, Kim D. Thompson, Phornphan Phrompanya, Patcharapong Thangsunan, Pattanapong Thangsunan, Kanokporn Saenphet, Supap Saenphet, Wararut Buncharoen, Anurak
Fish & Shellfish Immunology.2025; 165: 110561. CrossRef
Genomic Characterization of Four Novel Probiotic Strains with Enzymatic Activity and Their Effects on Carp (Cyprinus carpio)
Evgeniya Valeryevna Prazdnova, Maria Sergeevna Mazanko, Victoria Nikolaevna Shevchenko, Radomir Viktorovich Skripnichenko, Maksim Pavlovich Kulikov, Lilia Sergeevna Golovko, Vadim Alexeevich Grigoriev, Tatiana Alexandrovna Maltseva, Daria Borisovna Kuliko
Animals.2025; 15(13): 1998. CrossRef
A three-plasmid-containing CRISPR-Cas9 platform to engineer Bacillus velezensis 916 as an efficient biocontrol agent
Lian Li, Kecheng Luo, Shuangyu Zhang, Xiaohua Wang, Sihan Wang, Xuehui Liu, Shanshan Zang, Yuan Liu, Changyong Zhou, Chuping Luo, Gladys Alexandre
Applied and Environmental Microbiology.2025;[Epub] CrossRef
Biocontrol potential and mechanism of Bacillus velezensis YMG-03 for sesame diseases
Huaituo Yang, Bipo He, Xinbei Zhao, Wenqing Yan, Jing Wang, Hui Zhao, Yunxia Ni, Hongyan Liu, Chao Ma
Physiological and Molecular Plant Pathology.2025; 140: 102880. CrossRef
Host-associated Bacillus velezensis T20 improved disease resistance and intestinal health of juvenile turbot (Scophthalmus maximus)
Guijuan Yu, Sifan Zhao, Weihao Ou, Qinghui Ai, Wenbing Zhang, Kangsen Mai, Yanjiao Zhang
Aquaculture Reports.2024; 35: 101927. CrossRef
Draft genome sequence of Bacillus velezensis endophytically isolated from roots of Polygala paniculata
Felipe de Paula Nogueira Cruz, Paulo Henrique Marques de Andrade, Cristina Paiva de Sousa, Paulo Teixeira Lacava, John J. Dennehy
Microbiology Resource Announcements.2024;[Epub] CrossRef
Cellulase with Bacillus velezensis improves physicochemical characteristics, microbiota and metabolites of corn germ meal during two-stage co-fermentation
Long Chen, Yang Guo, Xin Liu, Lin Zheng, Bingdong Wei, Zijian Zhao
World Journal of Microbiology and Biotechnology.2024;[Epub] CrossRef
Biocontrol manufacturing and agricultural applications of Bacillus velezensis
Abolfazl Keshmirshekan, Leonardo M. de Souza Mesquita, Sónia P.M. Ventura
Trends in Biotechnology.2024; 42(8): 986. CrossRef
Antagonistic Strain Bacillus velezensis JZ Mediates the Biocontrol of Bacillus altitudinis m-1, a Cause of Leaf Spot Disease in Strawberry
Li Zhang, Zirui Liu, Yilei Pu, Boyuan Zhang, Boshen Wang, Linman Xing, Yuting Li, Yingjun Zhang, Rong Gu, Feng Jia, Chengwei Li, Na Liu
International Journal of Molecular Sciences.2024; 25(16): 8872. CrossRef
Effects of dietary supplementation with Bacillus velezensis on the growth performance, body composition, antioxidant, immune-related gene expression, and histology of Pacific white shrimp, Litopenaeus vannamei
Arwa E. M. Abdelsamad, Rashad E. M. Said, Mona Assas, Alkhateib Y. Gaafar, Awatef H. Hamouda, Aldoushy Mahdy
BMC Veterinary Research.2024;[Epub] CrossRef
Subchronic oral toxicity assessment of Bacillus velezensis strain BV379 in sprague-dawley rats
Mark R. Bauter, Laura M. Brutscher, Laurie C. Dolan, Jessica L. Spears
Human & Experimental Toxicology.2024;[Epub] CrossRef
Bacillus spp. as potential probiotics: promoting piglet growth by improving intestinal health
Xiaopeng Tang, Yan Zeng, Kangning Xiong, Jinfeng Zhong
Frontiers in Veterinary Science.2024;[Epub] CrossRef
Bacillus velezensis CL197: a zearalenone detoxifying strain isolated from wheat with potential to be used in animal production
Paloma Bianca Orso, Alberto Gonçalves Evangelista, Tiago de Melo Nazareth, Carlos Luz, Keliani Bordin, Giuseppe Meca, Fernando Bittencourt Luciano
Veterinary Research Communications.2024; 48(6): 3847. CrossRef
Screening and identification of probiotics from the intestinal tract of largemouth bass (Micropterus salmoides) for use as a feed additive and bacterial infection control
Lu Xia, Gaofeng Cheng, Pan Wang, Xinyou Wang, Zhaoran Dong, Qingjiang Mu, Jiaqian Yu, Zhihao Jiang, Jun Xiao, Hao Feng, Xiangping Li, Weiguang Kong, Zhen Xu
Aquaculture.2024; 584: 740661. CrossRef
Optimization of Bacillus velezensis S26 sporulation for enhanced biocontrol of gray mold and anthracnose in postharvest strawberries
Alessandra Russi, Camille Eichelberger Granada, Joséli Schwambach
Postharvest Biology and Technology.2024; 210: 112737. CrossRef
The Probiotic Potential and Metabolite Characterization of Bioprotective Bacillus and Streptomyces for Applications in Animal Production
Alberto Gonçalves Evangelista, Tiago de Melo Nazareth, Carlos Luz, Victor Dopazo, Ana Moreno, Mario Riolo, Giuseppe Meca, Fernando Bittencourt Luciano
Animals.2024; 14(3): 388. CrossRef
Bacillus velezensis promotes the proliferation of lactic acid bacteria and influences the fermentation quality of whole-plant corn silage
Yili Wang, Gangqing Ying, Zimo Zhang, Yu Tang, Yunhua Zhang, Lijuan Chen
Frontiers in Plant Science.2024;[Epub] CrossRef
Pig-Derived Probiotic Bacillus tequilensis YB-2 Alleviates Intestinal Inflammation and Intestinal Barrier Damage in Colitis Mice by Suppressing the TLR4/NF-κB Signaling Pathway
Heng Yin, Chengbi Wang, Yi Shuai, Zhuoya Xie, Jingbo Liu
Animals.2024; 14(13): 1989. CrossRef
Genetic and Phenotypic Characterization of Bacillus velezensis Strain BV379 for Human Probiotic Applications
Laura M. Brutscher, Sebhat Gebrechristos, Sean M. Garvey, Jessica L. Spears
Microorganisms.2024; 12(3): 436. CrossRef
Effects of Tibetan Sheep–Derived Compound Probiotics on Growth Performance, Immune Function, Intestinal Tissue Morphology, and Intestinal Microbiota in Mice
Zifeng Gong, Guisheng Ye, Xi He, Xiaolong He
Probiotics and Antimicrobial Proteins.2024;[Epub] CrossRef
Exploring the protective role of Bacillus velezensis BV1704–Y in zebrafish health and disease resistance against Aeromonas hydrophila infection
Xiaozhou Qi, Fei Luo, Yilin Zhang, Gaoxue Wang, Fei Ling
Fish & Shellfish Immunology.2024; 152: 109789. CrossRef
Whole genome analysis, detoxification of ochratoxin a and physiological characterization of a novel Bacillus velezensis MM35 isolated from soil
Fengru Xu, Mengmeng Tang, Zhihao Yang, Chengshui Liao, Zuhua Yu, Rongxian Guo, Ke Shang, Songbiao Chen, Ke Yang, Jing Li, Ke Ding, Yanyan Jia
Frontiers in Microbiology.2024;[Epub] CrossRef
A Novel Bacillus amyloliquefaciens Specifically Improving the Solubility and Antioxidant Activities of Edible Bird’s Nest
Xin-Lin Li, Jian-Mei Lian, Xiao-Ling Chen, Qun-Yan Fan, Ying Yan, Feng-Jie Cui
Current Microbiology.2024;[Epub] CrossRef
Growth promotion on maize and whole-genome sequence analysis of Bacillus velezensis D103
Yating Zhang, Ning Zhang, Xinyue Bi, Tong Bi, Faryal Babar Baloch, Jianjia Miao, Nan Zeng, Bingxue Li, Yingfeng An, Feng Gao
Microbiology Spectrum.2024;[Epub] CrossRef
A New Bacillus velezensis Strain CML532 Improves Chicken Growth Performance and Reduces Intestinal Clostridium perfringens Colonization
A La Teng Zhu La, Qiu Wen, Yuxuan Xiao, Die Hu, Dan Liu, Yuming Guo, Yongfei Hu
Microorganisms.2024; 12(4): 771. CrossRef
Whole-Genome Sequencing And Characterization Of Two Bacillus velezensis Strains from Termitarium and A Comprehensive Comparative Genomic Analysis of Biosynthetic Gene Clusters
Venkatesan Dhanalakshmi, Jeyaprakash Rajendhran
Current Microbiology.2024;[Epub] CrossRef
Dietary Bacillus velezensis T23 fermented products supplementation improves growth, hepatopancreas and intestine health of Litopenaeus vannamei
Hongwei Yang, Dongdong Du, Qingshuang Zhang, Tsegay Teame, Anran Wang, Qiang Hao, Shubin Liu, Qianwen Ding, Yuanyuan Yao, Yalin Yang, Chao Ran, Shengkang Li, Zhen Zhang, Zhigang Zhou
Fish & Shellfish Immunology.2024; 149: 109595. CrossRef
Bacillus subtilis RBT-7/32 and Bacillus licheniformis RBT-11/17 as New Promising Strains for Use in Probiotic Feed Additives
Vera Yaderets, Nataliya Karpova, Elena Glagoleva, Alexandra Shibaeva, Vakhtang Dzhavakhiya
Microorganisms.2023; 11(11): 2729. CrossRef
Cervicovaginal Bacillus velezensis Isolate: A Potential Probiotic and an Antagonist Against Candida and Staphylococcus
Gulcan Sahal, Hanife Guler Donmez, Mehmet Sinan Beksac
Current Microbiology.2023;[Epub] CrossRef
Cellulolytic Bacillus Strain: Production Optimization Using Wheat Bran under Solid-State Fermentation and Investigation of Its Probiotic Potential
Taroub Bouzaiene, Manel Ziadi, Malek Enneifer, Abir Sellami, Abdelkarim Aydi, Ameur Cherif, Moktar Hamdi
Sustainability.2023; 15(10): 8394. CrossRef
Efficient control of the fungal pathogens Colletotrichum gloeosporioides and Penicillium digitatum infecting citrus fruits by native soilborne Bacillus velezensis strains
Tao Xuan Vu, Tram Bao Tran, Minh Binh Tran, Trang Thi Kim Do, Linh Mai Do, Mui Thi Dinh, Hanh-Dung Thai, Duc-Ngoc Pham, Van-Tuan Tran
Heliyon.2023; 9(2): e13663. CrossRef
Exploring a new technology for producing better-flavored HongJun Tofu, a traditional Neurospora-type okara food
Yuanxin Qiu, Cungang Li, Min Xia, Hao Dong, Hairu Yuan, Shuangling Ye, Qun Wang
LWT.2023; 180: 114700. CrossRef
Riverine pollution influences the intraspecific variation in the gut microbiome of an invasive fish, Cyprinus carpio (Linn., 1758)
Meghali Bharti, Shekhar Nagar, Ram Krishan Negi
3 Biotech.2023;[Epub] CrossRef
Whole-Genome Analysis of Termite-Derived Bacillus velezensis BV-10 and Its Application in King Grass Silage
Xingbo Zhang, Xiaotao He, Jieru Chen, Jingtao Li, Yuhui Wu, Yu Chen, Yuhui Yang
Microorganisms.2023; 11(11): 2697. CrossRef
Butyl succinate-mediated control of Bacillus velezensis ce 100 for apple anthracnose caused by Colletotrichum gloeosporioides
Seo Hyun Hwang, Chaw Ei Htwe Maung, Jun Su Noh, Jeong-Yong Cho, Kil Yong Kim
Journal of Applied Microbiology.2023;[Epub] CrossRef
Nanopore Sequencing Discloses Compositional Quality of Commercial Probiotic Feed Supplements
Worarat Kruasuwan, Piroon Jenjaroenpun, Tantip Arigul, Nipa Chokesajjawatee, Pimlapas Leekitcharoenphon, Suporn Foongladda, Thidathip Wongsurawat
Scientific Reports.2023;[Epub] CrossRef
Phenotypic characterization and genome analysis reveal the probiotic potential of a banyan endophyteBacillus velezensisK1
Riteshri Soni, Hareshkumar Keharia, Krina Shah, Neeraj Jain
Journal of Applied Microbiology.2023;[Epub] CrossRef
Complete genome analysis of Bacillus velezensis TS5 and its potential as a probiotic strain in mice
Benhao Chen, Yi Zhou, Lixiao Duan, Xuemei Gong, Xingmei Liu, Kangcheng Pan, Dong Zeng, Xueqin Ni, Yan Zeng
Frontiers in Microbiology.2023;[Epub] CrossRef
Comparative genomic and transcriptome analysis of Bacillus velezensis CL-4 fermented corn germ meal
Long Chen, Zihui Qu, Wei Yu, Lin Zheng, Haixin Qiao, Dan Wang, Bingdong Wei, Zijian Zhao
AMB Express.2023;[Epub] CrossRef
Dietary Bacillus velezensis R-71003 and sodium gluconate improve antioxidant capacity, immune response and resistance against Aeromonas hydrophila in common carp
Lili Yun, Meiru Kang, Yihao Shen, Junchang Feng, Guokun Yang, Jianxin Zhang, Xiaolin Meng, Xulu Chang
Fish & Shellfish Immunology.2023; 139: 108921. CrossRef
Synbiotic Agents and Their Active Components for Sustainable Aquaculture: Concepts, Action Mechanisms, and Applications
Vijayaram Srirengaraj, Hary L. Razafindralambo, Holy N. Rabetafika, Huu-Thanh Nguyen, Yun-Zhang Sun
Biology.2023; 12(12): 1498. CrossRef
Isolation and Screening of Antagonistic Endophytes against Phytophthora infestans and Preliminary Exploration on Anti-oomycete Mechanism of Bacillus velezensis 6-5
Jiaomei Zhang, Xiaoqing Huang, Yuqin Hou, Xiangning Xia, Zhiming Zhu, Airong Huang, Shun Feng, Peihua Li, Lei Shi, Pan Dong
Plants.2023; 12(4): 909. CrossRef
Animal Microbiomes as a Source of Novel Antibiotic-Producing Strains
Margarita N. Baranova, Ekaterina A. Pilipenko, Alexander G. Gabibov, Stanislav S. Terekhov, Ivan V. Smirnov
International Journal of Molecular Sciences.2023; 25(1): 537. CrossRef
Identification of a Novel Bacillus velezensis IS-6 Nudix Hydrolase Nh-9 Involved in Ochratoxin A Detoxification by Transcriptomic Profiling and Functional Verification
Israt Jahan, Bowen Tai, Junning Ma, Sarfaraz Hussain, Haolan Du, Ling Guo, Gang Wang, Tosin Victor Adegoke, Longxue Ma, Fuguo Xing
Journal of Agricultural and Food Chemistry.2023; 71(26): 10155. CrossRef
Potential Probiotic Acceptability of a Novel Strain of Paenibacillus konkukensis SK 3146 and Its Dietary Effects on Growth Performance, Intestinal Microbiota, and Meat Quality in Broilers
Seung-Gyu Moon, Damini Kothari, Woo-Do Lee, Jong-Il Kim, Kyung-Il Kim, Yong-Gi Kim, Gun-Whi Ga, Eun-Jip Kim, Soo-Ki Kim
Animals.2022; 12(11): 1471. CrossRef
Antibacterial Activity of Two Metabolites Isolated From Endophytic Bacteria Bacillus velezensis Ea73 in Ageratina adenophora
Zhihua Ren, Lei Xie, Samuel Kumi Okyere, Juan Wen, Yinan Ran, Xiang Nong, Yanchun Hu
Frontiers in Microbiology.2022;[Epub] CrossRef
Dynamic analysis of physicochemical characteristics and microbial communities of Aspergillus-type douchi during fermentation
Panwen Zhang, Hao Li, Wenpeng Zhao, Kai Xiong, He Wen, Huilin Yang, Xiaolan Wang
Food Research International.2022; 153: 110932. CrossRef
Metagenomic insights to understand the role of polluted river Yamuna in shaping the gut microbial communities of two invasive fish species
Meghali Bharti, Shekhar Nagar, Himani Khurana, Ram Krishan Negi
Archives of Microbiology.2022;[Epub] CrossRef
Bacillus velezensis MT9 and Pseudomonas chlororaphis MT5 as biocontrol agents against citrus sooty mold and associated insect pests
Matteo Calcagnile, Maurizio Salvatore Tredici, Antonio Pennetta, Silvia Caterina Resta, Adelfia Talà, Giuseppe Egidio De Benedetto, Pietro Alifano
Biological Control.2022; 176: 105091. CrossRef
Comparative Genome Analysis Reveals Phylogenetic Identity of Bacillus velezensis HNA3 and Genomic Insights into Its Plant Growth Promotion and Biocontrol Effects
Doaa S. Zaid, Shuyun Cai, Chang Hu, Ziqi Li, Youguo Li, Jeffrey A. Gralnick
Microbiology Spectrum.2022;[Epub] CrossRef
The safety and technological properties of Bacillus velezensis DMB06 used as a starter candidate were evaluated by genome analysis
Hong-Eun Na, Sojeong Heo, Yoon-Su Kim, Tao Kim, Gawon Lee, Jong-Hoon Lee, Do-Won Jeong
LWT.2022; 161: 113398. CrossRef
Structural and genetic insights into a poly-γ-glutamic acid with in vitro antioxidant activity of Bacillus velezensis VCN56
Ngoc Tung Quach, Thi Hanh Nguyen Vu, Thi Thu An Nguyen, Hoang Ha, Phu-Ha Ho, Son Chu-Ky, Lan-Huong Nguyen, Hai Van Nguyen, Thi Thu Thuy Thanh, Ngoc Anh Nguyen, Hoang Ha Chu, Quyet-Tien Phi
World Journal of Microbiology and Biotechnology.2022;[Epub] CrossRef
Autoclaved Diet with Inactivated Spores of Bacillus spp. Decreased Reproductive Performance of Muc2−/− and Muc2+/− Mice
Maryana V. Morozova, Galina V. Kalmykova, Nadezhda I. Akulova, Yuriy V. Ites, Valentina I. Korkina, Ekaterina A. Litvinova
Animals.2022; 12(18): 2399. CrossRef
Comparative genomics analysis of Bacillus velezensis LOH112 isolated from a nonagenarian provides insights into its biocontrol and probiotic traits
Zhenhuang Ge, Zhiqi Kuang, Jiahao Chen, Junyi Chen, Tianhao Liu, Zhigang She, Yongjun Lu
Gene.2022; 835: 146644. CrossRef
Fermentation of NaHCO3-treated corn germ meal by Bacillus velezensis CL-4 promotes lignocellulose degradation and nutrient utilization
Long Chen, Wanying Chen, Boyu Zheng, Wei Yu, Lin Zheng, Zihui Qu, Xiaogang Yan, Bingdong Wei, Zijian Zhao
Applied Microbiology and Biotechnology.2022; 106(18): 6077. CrossRef
Suppression of Grape White Rot Caused by Coniella vitis Using the Potential Biocontrol Agent Bacillus velezensis GSBZ09
Xiangtian Yin, Tinggang Li, Xilong Jiang, Xiaoning Tang, Jiakui Zhang, Lifang Yuan, Yanfeng Wei
Pathogens.2022; 11(2): 248. CrossRef
Effects of Dietary Bacillus velezensis LSG2-5 on Growth, Immunity, Antioxidant Capacity, and Disease Resistance of Amur minnow (Rhynchocypris lagowskii Dybowski)
Yurou Zhang, Mengnan Yu, Lili Lin, Jiajing Wang, Dongming Zhang, Qiuju Wang, Mahmoud M. Elsadek, Guiqin Wang, Qi Yao, Yuke Chen, Zhixin Guo, Xiangjun Leng
Aquaculture Nutrition.2022; 2022: 1. CrossRef
In Vivo Efficacy of Bacillus velezensis Isolated from Korean Gochang Bokbunja Vinegar against Carbapenem-Resistant Klebsiella pneumoniae Infections
Fatemeh Ghorbanian, Hoonhee Seo, Hanieh Tajdozian, Youngkyoung Lee, MD Abdur Rahim, Sukyung Kim, Il-Yun Jung, Saebim Lee, Ho-Yeon Song
Polish Journal of Microbiology.2022; 71(4): 553. CrossRef
Analysis of the probiotic activity of Bacillus velezensis RT-26 strain isolated from reindeer rumen by whole-genome sequencing
L.A. Ilina, V.A. Filippova, E.S. Ponomareva, E.A. Brazhnik, T.P. Dunyashev, K.A. Laishev, S. Eliseeva, E.A. Vatskel
BIO Web of Conferences.2022; 48: 03002. CrossRef
Antimicrobial Effects of Potential Probiotics of Bacillus spp. Isolated from Human Microbiota: In Vitro and In Silico Methods
Alfonso Torres-Sánchez, Jesús Pardo-Cacho, Ana López-Moreno, Ángel Ruiz-Moreno, Klara Cerk, Margarita Aguilera
Microorganisms.2021; 9(8): 1615. CrossRef

Journal Articles

Genetic changes in plaque-purified varicella vaccine strain Suduvax during in vitro propagation in cell culture: Hye Rim Hwang , Se Hwan Kang , Chan Hee Lee; J. Microbiol. 2021;59(7):702-707. Published online June 1, 2021; DOI: https://doi.org/10.1007/s12275-021-1062-3

203 View
0 Download

Abstract PDF: Infection by varicella-zoster virus (VZV) can be prevented by using live attenuated vaccines. VZV vaccine strains are known to evolve rapidly in vivo, however, their genetic and biological effects are not known. In this study, the plaque-purified vaccine strain Suduvax (PPS) was used to understand the genetic changes that occur during the process of propagation in in vitro cell culture. Full genome sequences of three different passages (p4, p30, and p60) of PPS were determined and compared for genetic changes. Mutations were found at 59 positions. The number of genetically polymorphic sites (GPS) and the average of minor allele frequency (MAF) at GPSs were not significantly altered after passaging in cell culture up to p60. The number of variant nucleotide positions (VNPs), wherein GPS was found in at least one passage of PPS, was 149. Overall, MAF changed by less than 5% at 52 VNPs, increased by more than 5% at 42 VNPs, and decreased by more than 5% at 55 VNPs in p60, compared with that seen in p4. More complicated patterns of changes in MAF were observed when genetic polymorphism at 149 VNPs was analyzed among the three passages. However, MAF decreased and mixed genotypes became unequivocally fixed to vaccine type in 23 vaccine-specific positions in higher passages of PPS. Plaque-purified Suduvax appeared to adapt to better replication during in vitro cell culture. Further studies with other vaccine strains and in vivo studies will help to understand the evolution of the VZV vaccine.

Comparative analysis of type 2 diabetes-associated gut microbiota between Han and Mongolian people: Shu-chun Li , Yao Xiao , Ri-tu Wu , Dan Xie , Huan-hu Zhao , Gang-yi Shen , En-qi Wu; J. Microbiol. 2021;59(7):693-701. Published online May 15, 2021; DOI: https://doi.org/10.1007/s12275-021-0454-8

356 View
0 Download
21 Web of Science
18 Crossref

Abstract PDF

Due to the different rates of diabetes in different ethnic groups and the structural differences in intestinal microbiota, this study evaluated the changes in diabetes-related intestinal microbiota in two ethnic groups. Fifty-six stool samples were collected from subjects from the Han and Mongolian ethnic groups in China, including participants without diabetes (non-diabetic, ND) and with type 2 diabetes (T2D). The 16S rDNA gene V3 + V4 area was extracted from microbiota, amplified by PCR, and used to perform high-throughput sequencing and screen differential microbiota associated with ethnicity. The results showed that there were 44 T2D-related bacterial markers in the Han subjects, of which Flavonifractor, Alistipes, Prevotella, Oscillibacter, Clostridium XlVa, and Lachnospiracea_incertae_sedis were most closely related to diabetes. There were 20 T2D-related bacterial markers in the Mongolian subjects, of which Fastidiosipila and Barnesiella were most closely related to diabetes. The common markers of T2D bacteria in the two ethnic groups were Papillibacter and Bifidobacterium. There were 17 metabolic pathways with significant differences between the ND and T2D groups in the Han group, and 29 metabolic pathways in the Mongolian group. The glutamatergic metabolic pathway was the only common metabolic pathway in two ethnic groups. The composition and function of diabetes-related bacteria were significantly different among the different ethnic groups, which suggested that the influence of ethnic differences should be fully considered when studying the association between diabetes and bacteria. In addition, the common bacterial markers found in diabetic patients of different ethnic groups in this study can be used as potential targets to study the pathogenesis and treatment of diabetes.

Citations

Citations to this article as recorded by

Impact of Ketogenic and Mediterranean Diets on Gut Microbiota Profile and Clinical Outcomes in Drug-Naïve Patients with Diabesity: A 12-Month Pilot Study
Vanessa Palmas, Andrea Deledda, Vitor Heidrich, Giuseppina Sanna, Giulia Cambarau, Michele Fosci, Lorenzo Puglia, Enrico Antonio Cappai, Alessio Lai, Andrea Loviselli, Aldo Manzin, Fernanda Velluzzi
Metabolites.2025; 15(1): 22. CrossRef
Gut microbiome links obesity to type 2 diabetes: insights from Mendelian randomization
Li Fu, Ancha Baranova, Hongbao Cao, Fuquan Zhang
BMC Microbiology.2025;[Epub] CrossRef
Diets shape thermal responses in Chinese giant salamanders by altering liver metabolism
Runliang Zhai, Chunlin Zhao, Liming Chang, Jiongyu Liu, Tian Zhao, Jianping Jiang, Wei Zhu
Frontiers in Microbiology.2025;[Epub] CrossRef
The relationship between gut microbiome and human diseases: mechanisms, predisposing factors and potential intervention
Mohammad Shabani, Ali Ghoshehy, Amir Mohammad Mottaghi, Zahra Chegini, Azam Kerami, Aref Shariati, Majid Taati Moghadam
Frontiers in Cellular and Infection Microbiology.2025;[Epub] CrossRef
Pentachlorophenol increases diabetes risk by damaging β-cell secretion and disrupting gut microbial-related amino acids and fatty acids biosynthesis
Muke Han, Jie Yin, Xinyi Wang, Runhui Yang, Zhong Dong, Junyu Ning, Yajun Xu, Bing Shao
Journal of Hazardous Materials.2024; 480: 136103. CrossRef
Improvement of glucose metabolism disorder by wheat dietary fibre depended on the intake mode and regulated through TLRs/NF-κB/TNF pathway in db/db mice
Xinguo Liu, Shaojie Pang, Aoxiang Li, Yong Wang, Wei Fang, Wentao Qi
Food and Agricultural Immunology.2024;[Epub] CrossRef
Chemical modifications of xylan from sugarcane bagasse and their regulatory effects on gut microbiota in mice
Guozhu Zhang, Yuan Guan, Xin Zhang, Jing Li, Haishan Chen, Li Zhou, Jun Liang, Xia Li
Journal of Carbohydrate Chemistry.2024; 43(3): 90. CrossRef
Tangshen Formula alleviates inflammatory injury against aged diabetic kidney disease through modulating gut microbiota composition and related amino acid metabolism
Dan-Qian Chen, Hao-Jun Zhang, Wen Zhang, Kai Feng, Hui Liu, Hai-Ling Zhao, Ping Li
Experimental Gerontology.2024; 188: 112393. CrossRef
Differences in gut microbiota and its metabolic function among different fasting plasma glucose groups in Mongolian population of China
Yanchao Liu, Mingxiao Wang, Wuyuntana Li, Yumin Gao, Hailing Li, Ning Cao, Wenli Hao, Lingyan Zhao
BMC Microbiology.2023;[Epub] CrossRef
Bi-Directional Interactions between Glucose-Lowering Medications and Gut Microbiome in Patients with Type 2 Diabetes Mellitus: A Systematic Review
Ruolin Li, Fereshteh Shokri, Alejandro Rincon, Fernando Rivadeneira, Carolina Medina-Gomez, Fariba Ahmadizar
Genes.2023; 14(8): 1572. CrossRef
Microbe-Disease Association Prediction Using RGCN Through Microbe-Drug-Disease Network
Yueyue Wang, Xiujuan Lei, Yi Pan
IEEE/ACM Transactions on Computational Biology and Bioinformatics.2023; 20(6): 3353. CrossRef
Longitudinal Characterization of the Gut Microbiota in the Diabetic ZDSD Rat Model and Therapeutic Potential of Oligofructose
Savanna N. Weninger, Angela Ding, Elizabeth N. Browne, Morgan L. Frost, Gabriele Schiro, Daniel Laubitz, Frank A. Duca
Metabolites.2023; 13(5): 660. CrossRef
Effect of Benaglutide on Gut Microbiota and Fecal Metabolites in Patients with Type 2 Diabetes Mellitus
Chen-Yu Han, Xiao-Mei Ye, Jia-Ping Lu, Hai-Ying Jin, Ping Wang, Wei-Wei Xu, Min Zhang
Diabetes, Metabolic Syndrome and Obesity.2023; Volume 16: 2329. CrossRef
Alteration of intestinal microbiota is associated with diabetic retinopathy and its severity: Samples collected from southeast coast Chinese
Xue-Mei Gu, Chao-Yin Lu, Jian Pan, Jian-Zhong Ye, Qi-Han Zhu
World Journal of Diabetes.2023; 14(6): 862. CrossRef
Progress in research on gut microbiota in ethnic minorities in China and consideration of intervention strategies based on ethnic medicine: A review
Rong Chen, Zhong-Yu Duan, Xiao-Hua Duan, Qing-Hua Chen, Jin Zheng
Frontiers in Cellular and Infection Microbiology.2022;[Epub] CrossRef
Effects of Oral Glucose-Lowering Agents on Gut Microbiota and Microbial Metabolites
Dongmei Wang, Jieying Liu, Liyuan Zhou, Qian Zhang, Ming Li, Xinhua Xiao
Frontiers in Endocrinology.2022;[Epub] CrossRef
Depletion of gut secretory immunoglobulin A coatedLactobacillus reuteriis associated with gestational diabetes mellitus-related intestinal mucosal barrier damage
Haowen Zhang, Ce Qi, Yuning Zhao, Mengyao Lu, Xinyue Li, Jingbo Zhou, Hongyang Dang, Mengjun Cui, Tingting Miao, Jin Sun, Duo Li
Food & Function.2021; 12(21): 10783. CrossRef
The Microbiota Profile Analysis of Combined Periodontal-Endodontic Lesions Using 16S rRNA Next-Generation Sequencing
Ping Sun, Zhiyong Guo, Daiping Guo, Jian Wang, Tingting Wu, Tingjun Li, Jiannan Liu, Xinhua Liu, Jôice D. Corrêa
Journal of Immunology Research.2021; 2021: 1. CrossRef

Differences in seroprevalence between epicenter and non-epicenter areas of the COVID-19 outbreak in South Korea: Hye Won Jeong , Hyun-Ha Chang , Eun Ji Kim , Yu Kyung Kim , Se-Mi Kim , Eun-Ha Kim , Young-Il Kim , Mark Anthony B. Casel , Seong-Gyu Kim , Rare Rollon , Seung-Gyu Jang , Kwang-Min Yu , Hee-Sung Kim , Hee Sue Park , Su-Jin Park , Yong-Dae Kim , Eung-Gook Kim , Young Ki Choi; J. Microbiol. 2021;59(5):530-533. Published online April 28, 2021; DOI: https://doi.org/10.1007/s12275-021-1095-7

332 View
0 Download
2 Web of Science
2 Crossref

Abstract PDF

To compare the standardized severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) seroprevalence of high epicenter region with non-epicenter region, serological studies were performed with a total of 3,268 sera from Daegu City and 3,981 sera from Chungbuk Province. Indirect immunofluorescence assay (IFA) for SARS-CoV-2 IgG results showed a high seroprevalence rate in the Daegu City (epicenter) compared with a non-epicenter area (Chungbuk Province) (1.27% vs. 0.91%, P = 0.0358). It is noteworthy that the highest seroprevalence in Daegu City was found in elderly patients (70’s) whereas young adult patients (20’s) in Chungbuk Province showed the highest seroprevalence. Neutralizing antibody (NAb) titers were found in three samples from Daegu City (3/3, 268, 0.09%) while none of the samples from Chungbuk Province were NAb positive. These results demonstrated that even following the large outbreak, the seropositive rate of SARS-CoV-2 in the general population remained low in South Korea.

Citations

Citations to this article as recorded by

Distinctive Combinations of RBD Mutations Contribute to Antibody Evasion in the Case of the SARS-CoV-2 Beta Variant
Tae-Hun Kim, Sojung Bae, Sunggeun Goo, Jinjong Myoung
Journal of Microbiology and Biotechnology.2023; 33(12): 1587. CrossRef
The Seroprevalence of SARS-CoV-2 in Children During Early COVID-19 Pandemic in Korea: A Nationwide, Population-Based Study
Jin Lee, Young June Choe, Dohsik Minn, Jong-Hyun Kim
Journal of Korean Medical Science.2022;[Epub] CrossRef

Review

[Minireview]Potential roles of condensin in genome organization and beyond in fission yeast: Kyoung-Dong Kim; J. Microbiol. 2021;59(5):449-459. Published online April 20, 2021; DOI: https://doi.org/10.1007/s12275-021-1039-2

304 View
0 Download
6 Web of Science
6 Crossref

Abstract PDF

The genome is highly organized hierarchically by the function of structural maintenance of chromosomes (SMC) complex proteins such as condensin and cohesin from bacteria to humans. Although the roles of SMC complex proteins have been well characterized, their specialized roles in nuclear processes remain unclear. Condensin and cohesin have distinct binding sites and mediate long-range and short-range genomic associations, respectively, to form cell cycle-specific genome organization. Condensin can be recruited to highly expressed genes as well as dispersed repeat genetic elements, such as Pol III-transcribed genes, LTR retrotransposon, and rDNA repeat. In particular, mitotic transcription factors Ace2 and Ams2 recruit condensin to their target genes, forming centromeric clustering during mitosis. Condensin is potentially involved in various chromosomal processes such as the mobility of chromosomes, chromosome territories, DNA reannealing, and transcription factories. The current knowledge of condensin in fission yeast summarized in this review can help us understand how condensin mediates genome organization and participates in chromosomal processes in other organisms.

Citations

Citations to this article as recorded by

Unveiling nucleosome dynamics: A comparative study using all-atom and coarse-grained simulations enhanced by principal component analysis
Abhik Ghosh Moulick, Rutika Patel, Augustine Onyema, Sharon M. Loverde
The Journal of Chemical Physics.2025;[Epub] CrossRef
BMI1s interact with condensin complexes to regulate chromatin 3D structure and gene expression in Arabidopsis
Lingxiao Luo, Minqi Yang, Yue Zhou
aBIOTECH.2025; 6(3): 424. CrossRef
Brewing COFFEE: A Sequence-Specific Coarse-Grained Energy Function for Simulations of DNA−Protein Complexes
Debayan Chakraborty, Balaka Mondal, D. Thirumalai
Journal of Chemical Theory and Computation.2024; 20(3): 1398. CrossRef
Contributions of transcriptional noise to leukaemia evolution: KAT2A as a case-study
Cristina Pina
Philosophical Transactions of the Royal Society B: Biological Sciences.2024;[Epub] CrossRef
Viral remodeling of the 4D nucleome
Kyoung-Dong Kim, Paul M. Lieberman
Experimental & Molecular Medicine.2024; 56(4): 799. CrossRef
BiFCo: visualizing cohesin assembly/disassembly cycle in living cells
Emilio González-Martín, Juan Jiménez, Víctor A Tallada
Life Science Alliance.2023; 6(7): e202301945. CrossRef

Journal Articles

Adenosylhomocysteinase like 1 interacts with nonstructural 5A and regulates hepatitis C virus propagation: Yun-Sook Lim , Han N. Mai , Lap P. Nguyen , Sang Min Kang , Dongseob Tark , Soon B. Hwang; J. Microbiol. 2021;59(1):101-109. Published online December 23, 2020; DOI: https://doi.org/10.1007/s12275-021-0470-8

323 View
0 Download
4 Web of Science
5 Crossref

Abstract PDF

Hepatitis C virus (HCV) life cycle is highly dependent on cellular proteins for viral propagation. In order to identify the cellular factors involved in HCV propagation, we previously performed a protein microarray assay using the HCV nonstructural 5A (NS5A) protein as a probe. Of ~9,000 human cellular proteins immobilized in a microarray, adenosylhomocysteinase like 1 (AHCYL1) was among 90 proteins identified as NS5A interactors. Of these candidates, AHCYL1 was selected for further study. In the present study, we verified the physical interaction between NS5A and AHCYL1 by both in vitro pulldown and coimmunoprecipitation assays. Furthermore, HCV NS5A interacted with endogenous AHCYL1 in Jc1-infected cells. Both NS5A and AHCYL1 were colocalized in the cytoplasmic region in HCV-replicating cells. siRNAmediated knockdown of AHCYL1 abrogated HCV propagation. Exogenous expression of the siRNA-resistant AHCYL1 mutant, but not of the wild-type AHCYL1, restored HCV protein expression levels, indicating that AHCYL1 was required specifically for HCV propagation. Importantly, AHCYL1 was involved in the HCV internal ribosome entry site-mediated translation step of the HCV life cycle. Finally, we demonstrated that the proteasomal degradation pathway of AHCYL1 was modulated by persistent HCV infection. Collectively, these data suggest that HCV may modulate the AHCYL1 protein to promote viral propagation.

Citations

Citations to this article as recorded by

Antiviral activity and mechanism of purine morpholine nucleoside analogues incorporating a sulfonamide fragment
Yuyuan Yang, Runjiang Song, Shaobo Wang, Guangcheng Zu, Baoan Song
Journal of Advanced Research.2025;[Epub] CrossRef
IRBITs, signaling molecules of great functional diversity
Ying Liu, Xuhui Feng, Han Wu, Tianxiang Gui, Mingfeng Fu, Xudong Luo, Lei Zhao, Li-Ming Chen
Pflügers Archiv - European Journal of Physiology.2025;[Epub] CrossRef
Amuvatinib Blocks SARS-CoV-2 Infection at the Entry Step of the Viral Life Cycle
Trang T. X. Huynh, Thuy X. Pham, Gun-Hee Lee, Jae-Bong Lee, Sung-Geun Lee, Dongseob Tark, Yun-Sook Lim, Soon B. Hwang, Donna M. Neumann
Microbiology Spectrum.2023;[Epub] CrossRef
Inhibition of KIF20A suppresses the replication of influenza A virus by inhibiting viral entry
Hoyeon Jeon, Younghyun Lim, In-Gu Lee, Dong-In Kim, Keun Pil Kim, So-Hee Hong, Jeongkyu Kim, Youn-Sang Jung, Young-Jin Seo
Journal of Microbiology.2022; 60(11): 1113. CrossRef
Asunaprevir, a Potent Hepatitis C Virus Protease Inhibitor, Blocks SARS-CoV-2 Propagation
Yun-Sook Lim, Lap P. Nguyen, Gun-Hee Lee, Sung-Geun Lee, Kwang-Soo Lyoo, Bumseok Kim, Soon B. Hwang
Molecules and Cells.2021; 44(9): 688. CrossRef

Influence of dragon bamboo with different planting patterns on microbial community and physicochemical property of soil on sunny and shady slopes: Weiyi Liu , Fang Wang , Yanmei Sun , Lei Yang , Huihai Chen , Weijie Liu , Bin Zhu , Chaomao Hui , Shiwei Wang; J. Microbiol. 2020;58(11):906-914. Published online October 30, 2020; DOI: https://doi.org/10.1007/s12275-020-0082-8

349 View
0 Download
13 Web of Science
13 Crossref

Abstract PDF

Dragon bamboo (Dendrocalamus giganteus) is a giant sympodial bamboo species widely distributed in Asia. However, it remains unclear how dragon bamboo and soil microbes interact to affect soil properties. In this study, we investigated the planting patterns (semi-natural and artificial) on different slopes (sunny and shady) to determine the effects on soil properties and microbial community. The results showed that the soil in which dragon bamboo was grown was acidic, with a pH value of ~5. Also, the soil organic matter content, nitrogen hydrolysate concentration, total nitrogen, available potassium, and total potassium of the dragon bamboo seminatural forest significantly improved, especially on the sunny slope. In contrast, the available phosphorus level was higher in the artificial bamboo forest, probably owing to the phosphate fertilizer application. The bacterial and fungal diversity and the bacterial abundance were all higher on the sunny slope of the semi-natural forest than those in the other samples. The microbial operational taxonomic units (OTUs) shared between the shady and sunny slopes accounted for 47.8–62.2%, but the core OTUs of all samples were only 24.4– 30.4% of each sample, suggesting that the slope type had a significant effect on the microbial community. Some acidophilic microbes, such as Acidobacteria groups, Streptomyces and Mortierella, became dominant in dragon bamboo forest soil. A PICRUSt analysis of the bacterial functional groups revealed that post-translational modification, cell division, and coenzyme transport and metabolism were abundant in the semi-natural forest. However, some microorganisms with strong stress resistance might be activated in the artificial forest. Taken together, these results illustrated the influence of dragon bamboo growth on soil physicochemical property and microbial community, which might help understand the growth status of dragon bamboo under different planting patterns.

Citations

Citations to this article as recorded by

The Interaction Between Soil Microorganisms and Understory Ginseng During Its Growth
Yiming Lan, Yumu Shen, Yingxin Sun, Mei Han, Mingming Wan, Limin Yang
Horticulturae.2025; 11(5): 467. CrossRef
Bamboo for global sustainability: a systematic review of its environmental and ecological implications, climate action, and biodiversity contributions
Suman Dutta, Subrata Gorain, Jyotirmay Roy, Ritwika Das, Santanu Banerjee, Sudip Kumar Gorai, Malini Roy Choudhury, Sumanta Das
Environmental Reviews.2025; 33: 1. CrossRef
Microbial diversity and function in bamboo ecosystems
Yexuan Wang, Huimin Ren, Yue Zhong, Ruisheng Song, Siyuan Jiang, Mengjing Lai, Yuqi Shen, Shenkui Liu, Wenhui Shi, Guoning Qi
Frontiers in Microbiology.2025;[Epub] CrossRef
Characteristic Analysis of the Soil Bacterial Community Structure of Dendrocalamus brandisii from Seven Geographical Provenances in Yunnan Province
Qian Chen, Manyun Zhang, Negar Omidvar, Zhihong Xu, Shahla Hosseini Bai, Chaomao Hui, Weiyi Liu
Agronomy.2024; 14(9): 2010. CrossRef
Unveiling the impacts moso bamboo invasion on litter and soil properties: A meta-analysis
Weixue Luo, Qingyu Zhang, Peng Wang, Jie Luo, Chunyan She, Xuman Guo, Jiajia Yuan, Yuhong Sun, Ruming Guo, Zongfeng Li, Jinchun Liu, Jianping Tao
Science of The Total Environment.2024; 909: 168532. CrossRef
Transport, pollution, and health risk of heavy metals in “soil-medicinal and edible plant-human” system: A case study of farmland around the Beiya mining area in Yunnan, China
Jiayi Hu, Xiaofang Yang, Huajian Chi, Xin Liu, Ning Lu, Ya Liu, Shengchun Yang, Xiaodong Wen
Microchemical Journal.2024; 207: 111958. CrossRef
Microbial control of soil DOM transformation during the vegetation restoration in the Loess Plateau
Wenxin Chen, Qianqian Gao, Huaying Hu, Tingwei Shao, Chuifan Zhou
Plant and Soil.2024; 504(1-2): 385. CrossRef
Soil Bacterial Community Response to Fire Varies with Slope Aspect at Zhenshan Mountain, East China
Ping Zhu, Wenyan Liu, Zhongyuan Sun, Xinfu Bai, Jianqiang Song, Nan Wu, Yuping Hou
Eurasian Soil Science.2023; 56(5): 599. CrossRef
Structural characteristics and diversity of the rhizosphere bacterial communities of wild Fritillaria przewalskii Maxim. in the northeastern Tibetan Plateau
Zhijia Cui, Ran Li, Fan Li, Ling Jin, Haixu Wu, Chunya Cheng, Yi Ma, Zhenheng Wang, Yuanyuan Wang
Frontiers in Microbiology.2023;[Epub] CrossRef
Effects of different planting durations of Dendrocalamus brandisii on the soil bacterial community
Shuhong Zhu, Xiuting Zhao, Chaomao Hui, Zhongfu Zhang, Ruli Zhang, Weihan Su, Weiyi Liu
Journal of Soils and Sediments.2023; 23(11): 3891. CrossRef
Correlates of Rhizosphere Soil Properties, Fungal Community Composition, and Active Secondary Metabolites in Cornus officinalis in Different Regions of China
Haoqiang Sun, Binkai Han, Xiaolin Yang, Changfen He, Ke Zhao, Ting Wang, Shujing An, Xiaochang Xue, Jiefang Kang
Journal of Soil Science and Plant Nutrition.2023; 23(1): 514. CrossRef
Microbial inoculants and garbage fermentation liquid reduced root-knot nematode disease and As uptake in Panax quinquefolium cultivation by modulating rhizosphere microbiota community
Pei Cao, Xuemin Wei, Gang Wang, Xiaochen Chen, Jianping Han, Yuan Li
Chinese Herbal Medicines.2022; 14(1): 58. CrossRef
Heterotrophic Bacteria Play an Important Role in Endemism of Cephalostachyum pingbianense (Hsueh & Y.M. Yang ex Yi et al.) D.Z. Li & H.Q. Yang, 2007, a Full-Year Shooting Woody Bamboo
Tize Xia, Lushuang Li, Bin Li, Peitong Dou, Hanqi Yang
Forests.2022; 13(1): 121. CrossRef

Biosynthesis of adipic acid in metabolically engineered Saccharomyces cerevisiae: Xi Zhang , Yingli Liu , Jing Wang , Yunying Zhao , Yu Deng; J. Microbiol. 2020;58(12):1065-1075. Published online October 23, 2020; DOI: https://doi.org/10.1007/s12275-020-0261-7

591 View
0 Download
17 Web of Science
17 Crossref

Abstract PDF

Adipic Acid (AA) is a valued platform chemical compound, which can be used as a precursor of nylon-6,6. Due to the generation of an enormous amount of nitric oxide metabolites and the growing depletion of oil resources as a result of AA production from a mixture of cyclohexanol and cyclohexanone, the microbial methods for synthesizing AA have attracted significant attention. Of the several AA-producing pathways, the reverse adipate degradation pathway in Thermobifida fusca (Tfu RADP) is reported to be the most efficient, which has been confirmed in Escherichia coli. In this study, the heterologous Tfu RADP was constructed for producing AA in S. cerevisiae by co-expressing genes of Tfu_ 0875, Tfu_2399, Tfu_0067, Tfu_1647, Tfu_2576, and Tfu_ 2576. The AA titer combined with biomass, cofactors and other by-products was all determined after fermentation. During batch fermentation in a shake flask, the maximum AA titer was 3.83 mg/L, while the titer increased to 10.09 mg/L during fed-batch fermentation in a 5-L bioreactor after fermentation modification.

Citations

Citations to this article as recorded by

Synthetic biology strategies for sustainable bioplastic production by yeasts
Huong-Giang Le, Yongjae Lee, Sun-Mi Lee
Journal of Microbiology.2025; 63(3): e2501022. CrossRef
Production of dicarboxylates from ω-amino acids using a cofactor- and co-substrate-free in vitro biosynthetic system
Jinxin Yan, Hui Zhang, Hongxu Zhang, Hairong Yu, Wenjia Tian, Mingyuan Liu, Weikang Sun, Leilei Guo, Xiaoxu Tan, Kaiyu Gao, Tianyi Jiang, Chuanjuan Lü, Qianjin Kang, Wensi Meng, Cuiqing Ma, Chao Gao, Ping Xu
Engineering Microbiology.2025; 5(3): 100210. CrossRef
Comparative Analysis of Biotechnological and Catalytic Approaches to Synthesizing Organic Acids
K. N. Sorokina, Yu. V. Samoylova, V. N. Parmon
Catalysis in Industry.2025; 17(1): 75. CrossRef
Synthetic biology: pioneering the next bio revolution for a sustainable planet
Suhad A A Al-Salihi, Kathryn L Ford, Murnita M Mahyudin, Hamidun Bunawan
Journal of Applied Microbiology.2025;[Epub] CrossRef
Experimental, modeling and optimisation of adipic acid reactive extraction using ionic liquids
Elena Niculina Dragoi, Alexandra Cristina Blaga, Dan Cascaval, Anca Irina Galaction
Journal of Molecular Liquids.2024; 410: 125564. CrossRef
Structure sensitivity of the electrochemical hydrogenation of cis,cis-muconic acid to hexenedioic acid and adipic acid
Deep M. Patel, Prathamesh T. Prabhu, Geet Gupta, Marco Nazareno Dell'Anna, Samantha Kling, Huy T. Nguyen, Jean-Philippe Tessonnier, Luke T. Roling
Green Chemistry.2024; 26(8): 4506. CrossRef
Exploring the Potential of Bio-plasticizers: Functions, Advantages, and Challenges in Polymer Science
Felipe Martins de Souza, Ram K. Gupta
Journal of Polymers and the Environment.2024; 32(11): 5499. CrossRef
Poly (Butylene Adipate‐Co‐Terephthalate) (PBAT) – Based Biocomposites: A Comprehensive Review
Blessing E. Itabana, Amar K. Mohanty, Phil Dick, Mohini Sain, Atul Bali, Mike Tiessen, Loong‐Tak Lim, Manjusri Misra
Macromolecular Materials and Engineering.2024;[Epub] CrossRef
Comparative analysis of biotechnological and catalytic approaches to the production of organic acids
K. N. Sorokina, Y. V. Samoylova, V. N. Parmon
Kataliz v promyshlennosti.2024; 24(3): 73. CrossRef
Mid–Long Chain Dicarboxylic Acid Production via Systems Metabolic Engineering: Progress and Prospects
Shanna Gu, Fuzhou Zhu, Lin Zhang, Jianping Wen
Journal of Agricultural and Food Chemistry.2024; 72(11): 5555. CrossRef
Toward the use of mixed microbial cultures for the biological production of adipic and levulinic acid
Fernanda Pinto-Ibieta, Mara Cea, Antonio Serrano, Fernando E. Felissia, María Cristina Area, Francisco Cabrera, Gustavo Ciudad
Frontiers in Microbiology.2023;[Epub] CrossRef
Producing malonate in Saccharomyces cerevisiae via the β-alanine pathway
Shiyun Li, Wenxuan Fu, Ruifang Su, Yunying Zhao, Yu Deng
Systems Microbiology and Biomanufacturing.2023; 3(2): 328. CrossRef
Engineering yeast cell factories to produce biodegradable plastics and their monomers: Current status and prospects
Feng-Li Zhang, Lin Zhang, Du-Wen Zeng, Sha Liao, Yachao Fan, Verawat Champreda, Weerawat Runguphan, Xin-Qing Zhao
Biotechnology Advances.2023; 68: 108222. CrossRef
Sustainable Routes for the Synthesis of Renewable Adipic Acid from Biomass Derivatives
Man Lang, Hao Li
ChemSusChem.2022;[Epub] CrossRef
Research Progress on the Construction of Artificial Pathways for the Biosynthesis of Adipic Acid by Engineered Microbes
Yuchen Ning, Huan Liu, Renwei Zhang, Yuhan Jin, Yue Yu, Li Deng, Fang Wang
Fermentation.2022; 8(8): 393. CrossRef
Opportunities in the microbial valorization of sugar industrial organic waste to biodegradable smart food packaging materials
Sandhya Jayasekara, Lakshika Dissanayake, Lahiru N. Jayakody
International Journal of Food Microbiology.2022; 377: 109785. CrossRef
Implementation of Synthetic Pathways to Foster Microbe-Based Production of Non-Naturally Occurring Carboxylic Acids and Derivatives
Ana Vila-Santa, Fernão C. Mendes, Frederico C. Ferreira, Kristala L. J. Prather, Nuno P. Mira
Journal of Fungi.2021; 7(12): 1020. CrossRef

Anti-inflammatory and anti-oxidative effect of Korean propolis on Helicobacter pylori-induced gastric damage in vitro: Moon-Young Song , Da-Young Lee , Eun-Hee Kim; J. Microbiol. 2020;58(10):878-885. Published online September 2, 2020; DOI: https://doi.org/10.1007/s12275-020-0277-z

502 View
0 Download
33 Web of Science
32 Crossref

Abstract PDF

Helicobacter pylori, present in the stomach lining, is a Gramnegative bacterium that causes various gastrointestinal diseases, including gastritis and peptic ulcers. Propolis is a natural resinous substance collected from a variety of plants, and contains several natural bioactive substances. The aim of this study was to investigate the anti-inflammatory and antioxidative effects of Korean propolis on H. pylori-induced damage in the human adenocarcinoma gastric cell line. The propolis used in this study was obtained from the Korea Beekeeping Association in South Korea. The expression of pro-inflammatory interleukins (ILs), such as IL-8, IL-12, IL-1β, tumor necrosis factor alpha, cyclooxygenase-2, and inducible nitric oxide synthase, which was increased after H. pylori infection, significantly decreased in a dose-dependent manner upon pretreatment with Korean propolis, because of the suppression of mitogen-activated protein kinases and nuclear factor κB pathway. The anti-oxidative activity of propolis was assessed using the 2,2-diphenyl-1-picrylhydrazyl hydrate free radical assay. Korean propolis showed significant anti-oxidative effects via reactive oxygen species scavenging. In addition, pretreatment with Korean propolis upregulated the expression of anti-oxidant enzymes through Nrf2 signaling activation. These findings indicate that the use of Korean propolis, which has anti-inflammatory and anti-oxidative effects, can be promising for the prevention of H. pylori-induced gastric damage.

Citations

Citations to this article as recorded by

Network Pharmacology and Experimental Validation Reveal Therapeutic Potential of Propolis in UV-Induced Allergic Dermatitis
Liyuan Cheng, Jie Wang, Yicong Wang, Jingjing Li, Wenchao Yang
Foods.2025; 14(6): 996. CrossRef
Propolis Stands out as a Multifaceted Natural Product: Meta-Analysis on Its Sources, Bioactivities, Applications, and Future Perspectives
Ahmed Sabri Ayad, Samia Benchaabane, Tarek Daas, Guy Smagghe, Wahida Loucif-Ayad
Life.2025; 15(5): 764. CrossRef
Bee products in the fight against Helicobacter pylori and molecular interactions
Hesham R. El-Seedi, Mohamed S. Refaey, Aida A. Abd El-Wahed, Aida Albadawy, Sercan Karav, Shaden H. El-Seedi, Guiguang Cheng, Mohamed F. Salem, Lianliang Liu, Jie Tang, Tariq Z. Abolibda, Xiaobo Zou, Zhiming Guo, Shaden A.M. Khalifa
Microbial Pathogenesis.2025; 205: 107707. CrossRef
Potential Efficacy of Propolis in Treating Helicobacter pylori Infection and Its Mechanisms of Action
Haitao Nie, Qing Li, Keke Zhao, Wen Li, Cuiping Zhang, Xiasen Jiang
Nutrients.2025; 17(17): 2803. CrossRef
Nanocomposite hydrogel incorporating Arnica montana extract, propolis-loaded chitosan nanoparticles, and menstrual blood-derived mesenchymal stem cells for allergic rhinitis therapy
Kun Liang, Bo Zhao, Jun Wang, Xin Wang, Xuli Zhu, Saeed Rohani, Zhibin Li, Ben Ye
Journal of Materials Science: Materials in Medicine.2025;[Epub] CrossRef
Propolis as an autophagy modulator in relation to its roles in redox balance and inflammation regulation
R. Lesmana, S. Tandean, A. Christoper, A.A. Suwantika, N. Wathoni, R. Abdulah, J. Fearnley, V. Bankova, F. Zulhendri
Biomedicine & Pharmacotherapy.2024; 175: 116745. CrossRef
Exploring the Prospective Role of Propolis in Modifying Aging Hallmarks
Carla Scorza, Valeria Goncalves, Josef Finsterer, Fúlvio Scorza, Fernando Fonseca
Cells.2024; 13(5): 390. CrossRef
Development of a chitosan/propolis-based polymeric system: Characterization, biocompatibility, and modulation of transcription factor expression
Raquel Velázquez-Rodríguez, Amaury Pozos-Guillén, Martha Gabriela Chuc-Gamboa, Juan Valerio Cauich-Rodríguez, Héctor Flores-Reyes, Francisco Javier Tejeda-Nava, Fernando Javier Aguilar-Perez, Diana Maria Escobar Garcia
Journal of Bioactive and Compatible Polymers.2024; 39(5): 329. CrossRef
Therapeutic potential of propolis in alleviating inflammatory response and promoting wound healing in skin burn
Christian Oktavianus Manginstar, Trina Ekawati Tallei, Nurdjannah Jane Niode, Christina Leta Salaki, Sofia Safitri Hessel
Phytotherapy Research.2024; 38(2): 856. CrossRef
A review for non-antibiotic treatment of Helicobacter pylori: new insight
Neda Shadvar, Sousan Akrami, Seyyed-Mohammad-Amin Mousavi Sagharchi, Rafee Habib Askandar, Alireza Merati, Masoomeh Aghayari, Nikki Kaviani, Hamed Afkhami, Mojtaba Kashfi
Frontiers in Microbiology.2024;[Epub] CrossRef
Wound Healing, Anti-Inflammatory and Anti-Oxidant Activities, and Chemical Composition of Korean Propolis from Different Sources
Aman Dekebo, Chalshisa Geba, Daniel Bisrat, Jin Boo Jeong, Chuleui Jung
International Journal of Molecular Sciences.2024; 25(21): 11352. CrossRef
Effects of oxidative stress regulation in inflammation-associated gastric cancer progression treated using traditional Chinese medicines: A review
Bo Chen, Xinqian Dong, Jinlong Zhang, Wei Wang, Yujiao Song, Xitong Sun, Kangning Zhao, Zhen Sun
Medicine.2023; 102(46): e36157. CrossRef
Emodin Attenuates Inflammasome Activation Induced by Helicobacter pylori Infection through Inhibition of VacA Translocation
Thach Phan Van, Anh Duy Do
Microbiology and Biotechnology Letters.2023; 51(4): 507. CrossRef
Correlation between Chemical Profile of Georgian Propolis Extracts and Their Activity against Helicobacter pylori
Jarosław Widelski, Piotr Okińczyc, Katarzyna Suśniak, Anna Malm, Anna Bozhadze, Malkhaz Jokhadze, Izabela Korona-Głowniak
Molecules.2023; 28(3): 1374. CrossRef
Therapeutic effect of propolis nanoparticles on wound healing
Juan Yang, Yingjuan He, Sha Nan, Juan Li, Anjuan Pi, Lele Yan, Jinshan Xu, Yuhui Hao
Journal of Drug Delivery Science and Technology.2023; 82: 104284. CrossRef
Recent Update on the Anti-Inflammatory Activities of Propolis
Felix Zulhendri, Ronny Lesmana, Steven Tandean, Andreas Christoper, Kavita Chandrasekaran, Ilham Irsyam, Auliya A. Suwantika, Rizky Abdulah, Nasrul Wathoni
Molecules.2022; 27(23): 8473. CrossRef
Construction of a Cuprotosis-Related Gene-Based Model to Improve the Prognostic Evaluation of Patients with Gastric Cancer
Chunyan Han, Kai Zhang, XinKai Mo, Fu Wang
Journal of Immunology Research.2022; 2022: 1. CrossRef
Honey Bee Products: Preclinical and Clinical Studies of Their Anti-inflammatory and Immunomodulatory Properties
Hesham R. El-Seedi, Nehal Eid, Aida A. Abd El-Wahed, Mostafa E. Rateb, Hanan S. Afifi, Ahmed F. Algethami, Chao Zhao, Yahya Al Naggar, Sultan M. Alsharif, Haroon Elrasheid Tahir, Baojun Xu, Kai Wang, Shaden A. M. Khalifa
Frontiers in Nutrition.2022;[Epub] CrossRef
Plant-Based Polyphenols: Anti-Helicobacter pylori Effect and Improvement of Gut Microbiota
María Guerra-Valle, Patricio Orellana-Palma, Guillermo Petzold
Antioxidants.2022; 11(1): 109. CrossRef
DETERMINATION OF ANTI-UREASE ACTIVITY OF PROPOLIS FROM MARMARA REGION OF TURKEY
Zehra Can, Yakup Kara, Sevgi Kolaylı, İbrahim Çakmak
Uludağ Arıcılık Dergisi.2022; 22(1): 25. CrossRef
Nrf2 Downregulation Contributes to Epithelial-to-Mesenchymal Transition in Helicobacter pylori-Infected Cells
Sarah Bacon, Lornella Seeneevassen, Alison Fratacci, Faustine Rose, Camille Tiffon, Elodie Sifré, Maria M. Haykal, Maya M. Moubarak, Astrid Ducournau, Lucie Bruhl, Stéphane Claverol, Caroline Tokarski, Alina-Roxani Gouloumi, Ioannis S. Pateras, Thomas Dau
Cancers.2022; 14(17): 4316. CrossRef
Anti-Inflammatory Effect of Korean Propolis on Helicobacter pylori-Infected Gastric Mucosal Injury Mice Model
Moon-Young Song, Da-Young Lee, Young-Min Han, Eun-Hee Kim
Nutrients.2022; 14(21): 4644. CrossRef
Antifungal Properties of Chemically Defined Propolis from Various Geographical Regions
Marcin Ożarowski, Tomasz M. Karpiński, Rahat Alam, Małgorzata Łochyńska
Microorganisms.2022; 10(2): 364. CrossRef
The Antimicrobial Properties of Poplar and Aspen–Poplar Propolises and Their Active Components against Selected Microorganisms, including Helicobacter pylori
Jarosław Widelski, Piotr Okińczyc, Emil Paluch, Tomasz Mroczek, Jakub Szperlik, Magdalena Żuk, Zbigniew Sroka, Zuriyadda Sakipova, Ioanna Chinou, Krystyna Skalicka-Woźniak, Anna Malm, Izabela Korona-Głowniak
Pathogens.2022; 11(2): 191. CrossRef
Research Progress on Therapeutic Effect and Mechanism of Propolis on Wound Healing
Juan Yang, Anjuan Pi, Lele Yan, Juan Li, Sha Nan, Jing Zhang, Yuhui Hao, Juraj Majtan
Evidence-Based Complementary and Alternative Medicine.2022; 2022: 1. CrossRef
"GREEN SYNTHESIS OF NANO-SILVER/SODIUM ALGINATE/CARBOXYMETHYL XANTHAN GUM HYDROGEL AND EVALUATION OF ITS ANTI-INFLAMMATORY AND ANTI-Helicobacter pylori ACTIVITY "
NOURA Y. ELMEHBAD, NADIA A. MOHAMED, NAHED A. ABD EL-GHANY, MARWA M. ABDEL-AZIZ
Cellulose Chemistry and Technology.2022; 56(9-10): 983. CrossRef
Propolis-Loaded Chitosan Nanoparticles for the Treatment of Bacterial Diarrhea: In Vitro and In Vivo Evaluation
Jie Qiao, Jun Yang, Saman Jalili
Journal of Biomedical Nanotechnology.2022; 18(7): 1826. CrossRef
Steamed Ginger Extract Exerts Anti-inflammatory Effects in Helicobacter pylori-infected Gastric Epithelial Cells through Inhibition of NF-κB
Moon-Young Song, Da-Young Lee, Sang-Yong Park, Seul-A Seo, Jeong-Seung Hwang, Soo-Hyeon Heo, Eun-Hee Kim
Journal of Cancer Prevention.2021; 26(4): 289. CrossRef
Short‐term efficacy of a gel containing propolis extract, nanovitamin C and nanovitamin E on peri‐implant mucositis: A double‐blind, randomized, clinical trial
José González‐Serrano, Rosa María López‐Pintor, Julia Serrano, Jesús Torres, Gonzalo Hernández, Mariano Sanz
Journal of Periodontal Research.2021; 56(5): 897. CrossRef
Experimental Evidence for Therapeutic Potentials of Propolis
Priyanshu Bhargava, Debajit Mahanta, Ashish Kaul, Yoshiyuki Ishida, Keiji Terao, Renu Wadhwa, Sunil C. Kaul
Nutrients.2021; 13(8): 2528. CrossRef
Propolis and Its Gastroprotective Effects on NSAID-Induced Gastric Ulcer Disease: A Systematic Review
Porfirio Alonso Ruiz-Hurtado, Leticia Garduño-Siciliano, Pilar Domínguez-Verano, Daniela Balderas-Cordero, Gustavo Gorgua-Jiménez, Octavio Canales-Álvarez, María Margarita Canales-Martínez, Marco Aurelio Rodríguez-Monroy
Nutrients.2021; 13(9): 3169. CrossRef
Molecular Insights into the Antistress Potentials of Brazilian Green Propolis Extract and Its Constituent Artepillin C
Ashish Kaul, Raviprasad Kuthethur, Yoshiyuki Ishida, Keiji Terao, Renu Wadhwa, Sunil C. Kaul
Molecules.2021; 27(1): 80. CrossRef

Intervention with kimchi microbial community ameliorates obesity by regulating gut microbiota: Seong-Eun Park , Sun Jae Kwon , Kwang-Moon Cho , Seung-Ho Seo , Eun-Ju Kim , Tatsuya Unno , So-Hyeon Bok , Dae-Hun Park , Hong-Seok Son; J. Microbiol. 2020;58(10):859-867. Published online September 2, 2020; DOI: https://doi.org/10.1007/s12275-020-0266-2

419 View
0 Download
20 Web of Science
20 Crossref

Abstract PDF

The objective of this study was to evaluate anti-obesity effects of kimchi microbial community (KMC) on obesity and gut microbiota using a high fat diet-induced mouse model compared to effects of a single strain. Administration of KMC decreased body weight, adipose tissue, and liver weight gains. Relative content of Muribaculaceae in the gut of the KMCtreated group was higher than that in the high-fat diet (HFD) group whereas relative contents of Akkermansiaceae, Coriobacteriaceae, and Erysipelotrichaceae were lower in KMCtreated group. Metabolic profile of blood was found to change differently according to the administration of KMC and a single strain of Lactobacillus plantarum. Serum metabolites significantly increased in the HFD group but decreased in the KMC-treated group included arachidic acid, stearic acid, fumaric acid, and glucose, suggesting that the administration of KMC could influence energy metabolism. The main genus in KMC was not detected in guts of mice in KMC-treated group. Since the use of KMC has advantages in terms of safety, it has potential to improve gut microbial community for obese people.

Citations

Citations to this article as recorded by

Dietary effects of plant-based meat analog and animal meat on serum metabolism, gut microbiota, and hepatic metabolic pathway in mice
Hong Wang, Chen Ma, Yan Li, Longteng Zhang, Frans W.J. van den Berg, René Lametsch
Food Bioscience.2025; 68: 106665. CrossRef
Anti-obesogenic effects of plant natural products: A focus on Korean traditional foods
Gitishree Das, Luis Alfonso Jiménez Ortega, Sandra Gonçalves, J. Basilio Heredia, Maria de Lourdes Gomes Pereira, Anabela Romano, Han-Seung Shin, Jayanta Kumar Patra
Trends in Food Science & Technology.2024; 148: 104470. CrossRef
Anti-obesity activity of lactic acid bacteria-starter-based kimchi in high-fat diet-induced obese mice
Ye-Rang Yun, Min-Sung Kwon, Ho-Jae Lee, Wooje Lee, Ji-Eun Lee, Sung Wook Hong
Journal of Functional Foods.2024; 112: 105966. CrossRef
Effects of Kimchi Intake on the Gut Microbiota and Metabolite Profiles of High-Fat-Induced Obese Rats
Dong-Wook Kim, Quynh-An Nguyen, Saoraya Chanmuang, Sang-Bong Lee, Bo-Min Kim, Hyeon-Jeong Lee, Gwang-Ju Jang, Hyun-Jin Kim
Nutrients.2024; 16(18): 3095. CrossRef
Does kimchi deserve the status of a probiotic food?
Jeongmin Cha, Yeon Bee Kim, Seong-Eun Park, Se Hee Lee, Seong Woon Roh, Hong-Seok Son, Tae Woong Whon
Critical Reviews in Food Science and Nutrition.2024; 64(19): 6512. CrossRef
Revisiting the potential anti-obesity effects of kimchi and lactic acid bacteria isolated from kimchi: a lustrum of evidence
Anshul Sharma, Hae-Jeung Lee
Journal of Ethnic Foods.2024;[Epub] CrossRef
Metabolites of Kimchi Lactic Acid Bacteria, Indole-3-Lactic Acid, Phenyllactic Acid, and Leucic Acid, Inhibit Obesity-Related Inflammation in Human Mesenchymal Stem Cells
Moeun Lee, Daun Kim, Ji Yoon Chang
Journal of Microbiology and Biotechnology.2024; 34(2): 306. CrossRef
Dysregulation of CD177 + neutrophils on intraepithelial lymphocytes exacerbates gut inflammation via decreasing microbiota-derived DMF
Huimin Chen, Xiaohan Wu, Ruicong Sun, Huiying Lu, Ritian Lin, Xiang Gao, Gengfeng Li, Zhongsheng Feng, Ruixin Zhu, Yao Yao, Baisui Feng, Zhanju Liu
Gut Microbes.2023;[Epub] CrossRef
MicroRNA‐29a Compromises Hepatic Adiposis and Gut Dysbiosis in High Fat Diet‐Fed Mice via Downregulating Inflammation
Ya‐Ling Yang, Ying‐Hsien Huang, Feng‐Sheng Wang, Ming‐Chao Tsai, Chien‐Hung Chen, Wei‐Shiung Lian
Molecular Nutrition & Food Research.2023;[Epub] CrossRef
Certain Fermented Foods and Their Possible Health Effects with a Focus on Bioactive Compounds and Microorganisms
Gülsüm Deveci, Elif Çelik, Duygu Ağagündüz, Elena Bartkiene, João Miguel F. Rocha, Fatih Özogul
Fermentation.2023; 9(11): 923. CrossRef
Presence of an ultra-small microbiome in fermented cabbages
Hae-Won Lee, So-Ra Yoon, Yun-Mi Dang, Miran Kang, Kwangho Lee, Ji-Hyung Ha, Jin-Woo Bae
PeerJ.2023; 11: e15680. CrossRef
Immunomodulatory effects of Companilactobacillus allii WiKim39 and Lactococcus lactis WiKim0124 isolated from kimchi on lipopolysaccharide-induced RAW264.7 cells and dextran sulfate sodium-induced colitis in mice
Ye-Rang Yun, Moeun Lee, Jung Hee Song, Eun Ji Choi, Ji Yoon Chang
Journal of Functional Foods.2022; 90: 104969. CrossRef
Interaction between the PNPLA3 Gene and Nutritional Factors on NAFLD Development: The Korean Genome and Epidemiology Study
Sooyeon Oh, Jooho Lee, Sukyung Chun, Ja-Eun Choi, Mi Na Kim, Young Eun Chon, Yeonjung Ha, Seong-Gyu Hwang, Sang-Woon Choi, Kyung-Won Hong
Nutrients.2022; 15(1): 152. CrossRef
Acids produced by lactobacilli inhibit the growth of commensal Lachnospiraceae and S24-7 bacteria
Emma J. E. Brownlie, Danica Chaharlangi, Erin Oi-Yan Wong, Deanna Kim, William Wiley Navarre
Gut Microbes.2022;[Epub] CrossRef
The Role of Gut Microbiota Modulation Strategies in Obesity: The Applications and Mechanisms
Lingyue Shan, Akanksha Tyagi, Umair Shabbir, Xiuqin Chen, Selvakumar Vijayalakshmi, Pianpian Yan, Deog-Hwan Oh
Fermentation.2022; 8(8): 376. CrossRef
Fermented rice bran supplementation ameliorates obesity via gut microbiota and metabolism modification in female mice
Shiro Tochitani, Yoshiteru Maehara, Takahiro Kawase, Takamitsu Tsukahara, Ryoichi Shimizu, Taizo Watanabe, Kazuo Maehara, Kenji Asaoka, Hideo Matsuzaki
Journal of Clinical Biochemistry and Nutrition.2022; 70(2): 160. CrossRef
Bifidobacterium longum 070103 Fermented Milk Improve Glucose and Lipid Metabolism Disorders by Regulating Gut Microbiota in Mice
Tong Jiang, Ying Li, Longyan Li, Tingting Liang, Mingzhu Du, Lingshuang Yang, Juan Yang, Runshi Yang, Hui Zhao, Moutong Chen, Yu Ding, Jumei Zhang, Juan Wang, Xinqiang Xie, Qingping Wu
Nutrients.2022; 14(19): 4050. CrossRef
What Is the Role of Gut Microbiota in Obesity Prevalence? A Few Words about Gut Microbiota and Its Association with Obesity and Related Diseases
Julita Tokarek, Joanna Gadzinowska, Ewelina Młynarska, Beata Franczyk, Jacek Rysz
Microorganisms.2021; 10(1): 52. CrossRef
Eating Fermented: Health Benefits of LAB-Fermented Foods
Vincenzo Castellone, Elena Bancalari, Josep Rubert, Monica Gatti, Erasmo Neviani, Benedetta Bottari
Foods.2021; 10(11): 2639. CrossRef
Anti-Inflammatory and Immunomodulatory Properties of Fermented Plant Foods
Roghayeh Shahbazi, Farzaneh Sharifzad, Rana Bagheri, Nawal Alsadi, Hamed Yasavoli-Sharahi, Chantal Matar
Nutrients.2021; 13(5): 1516. CrossRef

Review

[Minireivew]Microbial consortia including methanotrophs: some benefits of living together: Rajendra Singh , Jaewon Ryu , Si Wouk Kim; J. Microbiol. 2019;57(11):939-952. Published online October 28, 2019; DOI: https://doi.org/10.1007/s12275-019-9328-8

328 View
0 Download
31 Web of Science
35 Crossref

Abstract PDF

With the progress of biotechnological research and improvements made in bioprocessing with pure cultures, microbial consortia have gained recognition for accomplishing biological processes with improved effectiveness. Microbes are indispensable tool in developing bioprocesses for the production of bioenergy and biochemicals while utilizing renewable resources due to technical, economic and environmental advantages. They communicate with specific cohorts in close proximity to promote metabolic cooperation. Use of positive microbial associations has been recognized widely, especially in food industries and bioremediation of toxic compounds and waste materials. Role of microbial associations in developing sustainable energy sources and substitutes for conventional fuels is highly promising with many commercial prospects. Detoxification of chemical contaminants sourced from domestic, agricultural and industrial wastes has also been achieved through microbial catalysis in pure and co-culture systems. Methanotrophs, the sole biological sink of greenhouse gas methane, catalyze the methane monooxygenasemediated oxidation of methane to methanol, a high energy density liquid and key platform chemical to produce commodity chemical compounds and their derivatives. Constructed microbial consortia have positive effects, such as improved biomass, biocatalytic potential, stability etc. In a methanotroph- heterotroph consortium, non-methanotrophs provide key nutrient factors and alleviate the toxicity from the culture. Non-methanotrophic organisms biologically stimulate the growth and activity of methanotrophs via production of growth stimulators. However, methanotrophs in association with cocultured microorganisms are in need of further exploration and thorough investigation to study their interaction mode and application with improved effectiveness.

Citations

Citations to this article as recorded by

Enrichment Culture of Methane-Oxidizing Bacteria and Acclimatization Experiment Research under Coal Mine Environmental Stress Mechanisms
Jun Xie, Qian Yang, Dawei Chen, Yi Wang, Haigang Du
Journal of Environmental Engineering.2026;[Epub] CrossRef
Microbial amidases: Characterization, advances and biotechnological applications
Rajendra Singh, Refana Shahul, Vijay Kumar, Ashok Kumar Yadav, Praveen Kumar Mehta
Biotechnology Notes.2025; 6: 44. CrossRef
Integrated bioprocess for single-cell protein production: Converting waste-derived biogas into sustainable feed protein
Hafiz Muhammad Aamir Shahzad, Zukhruf Asim, Zainab I. Elkahlout, Khaled A. Mahmoud, Fares Almomani, Kashif Rasool
Energy Conversion and Management: X.2025; 26: 101036. CrossRef
A machine-learning approach for predicting butyrate production by microbial consortia using metabolic network information
Claudia Silva-Andrade, Sergio Hernández, Pedro Saa, Ernesto Perez-Rueda, Daniel Garrido, Alberto J. Martin
PeerJ.2025; 13: e19296. CrossRef
Stable microbial community promotes aerobic methanotrophy in a large river-reservoir system
Qiong Tang, Zhe Li, Lunhui Lu, Yan Xiao, Xinghua Wu, Dianchang Wang, Marcela Hernandez
mSystems.2025;[Epub] CrossRef
The Art of Amalgamation: Advancing Crop Productivity with PGPR Consortia Solutions
Nishra Joshi, Bhargav Raval, Chaitanya Kumar Jha
Current Agriculture Research Journal.2025; 13(1): 04. CrossRef
Recent breakthrough in methanotrophy: Promising applications and future challenges
Grishma A. Dave, Bhumi M. Javia, Suhas J. Vyas, Ramesh K. Kothari, Rajesh K. Patel, Dushyant R. Dudhagara
Journal of Environmental Chemical Engineering.2025; 13(2): 115371. CrossRef
Simultaneous co-cultivation of the thermoacidophilic methanotroph, Methylacidiphilum sp. RTK17.1, and the microalga, Galdieria sp. RTK37.1, for single cell protein production
Carlos Cartin-Caballero, Christophe Collet, Daniel Gapes, Peter A. Gostomski, Matthew B. Stott, Carlo R. Carere
Engineering Microbiology.2025; 5(4): 100229. CrossRef
Methanol excretion by Methylomonas methanica is induced by the supernatant of a methanotrophic consortium
Geovanni Avila‐Nuñez, Alexis Saldivar, Patricia Ruiz‐Ruiz, Sergio Revah
Journal of Chemical Technology & Biotechnology.2024; 99(6): 1356. CrossRef
Biorreducción in vitro de cromo hexavalente utilizando consorcios microbianos
Stefany Serna-Toro, Fabiana María Lora-Suarez, Nelsy Loango-Chamorro
Actualidades biológicas.2024;[Epub] CrossRef
Using metabolic networks to predict cross-feeding and competition interactions between microorganisms
Claudia Silva-Andrade, María Rodriguez-Fernández, Daniel Garrido, Alberto J. M. Martin, Paul A. Jensen
Microbiology Spectrum.2024;[Epub] CrossRef
Impacts of Soil Compaction and Phosphorus Levels on the Dynamics of Phosphate-Solubilizing and Nitrogen-Fixing Bacteria in the Peanut Rhizosphere
Qi Wu, Liyu Yang, Haiyan Liang, Miao Liu, Yinglong Chen, Dianxu Chen, Pu Shen
Agronomy.2024; 14(9): 1971. CrossRef
Responses of composition and metabolism of microbial communities during the remediation of black and odorous water using bioaugmentation and aeration
Dan Zhang, Yu Lei, Chen Wang, Shuhuan Lan, Xudong Li, Yifei Xie
Environmental Research.2024; 243: 117895. CrossRef
Rational construction of synthetic consortia: Key considerations and model-based methods for guiding the development of a novel biosynthesis platform
Yu Liu, Boyuan Xue, Hao Liu, Shaojie Wang, Haijia Su
Biotechnology Advances.2024; 72: 108348. CrossRef
Characterizing A21: Natural Cyanobacteria-Based Consortium with Potential for Steroid Bioremediation in Wastewater Treatment
Govinda Guevara, Jamileth Stefania Espinoza Solorzano, Marta Vargas Ramírez, Andrada Rusu, Juana María Navarro Llorens
International Journal of Molecular Sciences.2024; 25(23): 13018. CrossRef
Differential effects of rhizobacteria from uninfected and infected tomato on Meloidogyne incognita under protected cultivation
Manjunatha T. Gowda, Radha Prasanna, Aditi Kundu, Virendra Singh Rana, Uma Rao, Gautam Chawla
Journal of Basic Microbiology.2023; 63(6): 604. CrossRef
Characteristics of the methanotroph used in coalbed methane emission reduction: Methane oxidation efficiency and coal wettability
Yinbo Zhou, Ruilin Zhang, Kunyun Tian, Shuang Zhao, Hanfeng Shi, Weidong Gong, Qing Lei
Fuel.2023; 349: 128596. CrossRef
Dynamics of Methane-Consuming Biomes from Wieliczka Formation: Environmental and Enrichment Studies
Weronika Goraj, Anna Pytlak, Jarosław Grządziel, Anna Gałązka, Zofia Stępniewska, Anna Szafranek-Nakonieczna
Biology.2023; 12(11): 1420. CrossRef
Construction of synthetic anti-fouling consortia: fouling control effects and polysaccharide degradation mechanisms
Ji Qi, Qicheng Zhou, Danlei Huang, Zhong Yu, Fangang Meng
Microbial Cell Factories.2023;[Epub] CrossRef
Enzymatic biomethanol production: Future perspective
Saif Khan, Gourav Jain, Alka Srivastava, Praveen C. Verma, Veena Pande, Rama S. Dubey, Mahvish Khan, Shafiul Haque, Saheem Ahmad
Sustainable Materials and Technologies.2023; 38: e00729. CrossRef
Isolation of Methane Enriched Bacterial Communities and Application as Wheat Biofertilizer under Drought Conditions: An Environmental Contribution
Adoración Barros-Rodríguez, Carlos García-Gálvez, Pamela Pacheco, Marina G. Kalyuzhnaya, Maximino Manzanera
Plants.2023; 12(13): 2487. CrossRef
An Overview on Methanotrophs and the Role of Methylosinus trichosporium OB3b for Biotechnological Applications
Rajendra Singh, Jaewon Ryu, Si Wouk Kim
Biotechnology and Bioprocess Engineering.2022; 27(4): 468. CrossRef
Methanol Production using Free and Immobilized Cells of a Newly Isolated Methylosinus trichosporium M19-4
Rajendra Singh, Jaewon Ryu, Si Wouk Kim
KSBB Journal.2022; 37(3): 93. CrossRef
Prospecting the significance of methane-utilizing bacteria in agriculture
Vijaya Rani, Radha Prasanna, Rajeev Kaushik
World Journal of Microbiology and Biotechnology.2022;[Epub] CrossRef
The Effect of In Vitro Coinoculation on the Physiological Parameters of White Lupine Plants (Lupinus albus L.)
Zyta Waraczewska, Alicja Niewiadomska, Agnieszka Wolna-Maruwka, Hanna Sulewska, Anna Budka, Agnieszka A. Pilarska
Applied Sciences.2022; 12(23): 12382. CrossRef
Genomic, biochemical, and phylogenetic evaluation of bacteria isolated from deep-sea sediment harboring methane hydrates
Audrey Menegaz Proenca, Maiara Monteiro Oliveira, Paula Fernanda Ribas Neves, Adriana Giongo, Rafael Rodrigues de Oliveira, Carolina Telles Ott, Letícia Marconatto, Halesio Milton Correa de Barros Neto, João Marcelo Medina Ketzer, Renata Medina-Silva
Archives of Microbiology.2022;[Epub] CrossRef
An Overview of Microbial α-amylase and Recent Biotechnological Developments
Rajendra Singh, Si Wouk Kim, Anila Kumari, Praveen Kumar Mehta
Current Biotechnology.2022; 11(1): 11. CrossRef
Enrichment of Methylosinus-dominant consortia from mangroves for polyhydroxybutyrate (PHB) production
Letícia Oliveira Bispo Cardoso, Bruno Karolski, Louise Hase Gracioso, Bruna Bacaro Borrego, Cláudio Augusto Oller do Nascimento, Elen Aquino Perpetuo
Journal of Environmental Chemical Engineering.2022; 10(5): 108490. CrossRef
Functional Investigation of Plant Growth Promoting Rhizobacterial Communities in Sugarcane
Mingjia Li, Ran Liu, Yanjun Li, Cunhu Wang, Wenjing Ma, Lei Zheng, Kefei Zhang, Xing Fu, Xinxin Li, Yachun Su, Guoqiang Huang, Yongjia Zhong, Hong Liao
Frontiers in Microbiology.2022;[Epub] CrossRef
Conversion of methane to methanol: technologies and future challenges
Rajesh K. Srivastava, Prakash Kumar Sarangi, Latika Bhatia, Akhilesh Kumar Singh, Krushna Prasad Shadangi
Biomass Conversion and Biorefinery.2022; 12(5): 1851. CrossRef
Diazotrophic Behaviour in a Non-Sterile Bioreactor: The Effect of O2-Availability
Amber Yasemin Shirin de Zoete, Hendrik Gideon Brink, Joshua Cornelus Beukes, Ignatius Leopoldus van Rooyen, Willie Nicol
Processes.2021; 9(11): 2039. CrossRef
Plant Growth Stimulation by Microbial Consortia
Gustavo Santoyo, Paulina Guzmán-Guzmán, Fannie Isela Parra-Cota, Sergio de los Santos-Villalobos, Ma. del Carmen Orozco-Mosqueda, Bernard R. Glick
Agronomy.2021; 11(2): 219. CrossRef
Recent trends in methane to bioproduct conversion by methanotrophs
Aleksandra Gęsicka, Piotr Oleskowicz-Popiel, Mateusz Łężyk
Biotechnology Advances.2021; 53: 107861. CrossRef
Modelling and multi-objective optimization for simulation of hydrogen production using a photosynthetic consortium
Dulce J. Hernández-Melchor, Beni Camacho-Pérez, Elvira Ríos-Leal, Jesus Alarcón-Bonilla, Pablo A. López-Pérez
International Journal of Chemical Reactor Engineering.2020;[Epub] CrossRef
Environmental and Microbial Interactions Shape Methane-Oxidizing Bacterial Communities in a Stratified Lake
Carole Guggenheim, Remo Freimann, Magdalena J. Mayr, Karin Beck, Bernhard Wehrli, Helmut Bürgmann
Frontiers in Microbiology.2020;[Epub] CrossRef

Journal Articles

Reduction of selenite to elemental Se(0) with simultaneous degradation of phenol by co-cultures of Phanerochaete chrysosporium and Delftia lacustris: Samayita Chakraborty , Eldon R. Rene , Piet N. L. Lens; J. Microbiol. 2019;57(9):738-747. Published online August 3, 2019; DOI: https://doi.org/10.1007/s12275-019-9042-6

329 View
0 Download
8 Web of Science
8 Crossref

Abstract PDF

The simultaneous removal of phenol and selenite from synthetic wastewater was investigated by adopting two different co-culturing techniques using the fungus Phanerochaete chrysosporium and the bacterium Delftia lacustris. Separately grown biomass of the fungus and the bacterium (suspended co-culture) was incubated with different concentrations of phenol (0–1,200 mg/L) and selenite (10 mg/L). The selenite ions were biologically reduced to extracellular Se(0) nanoparticles (3.58 nm diameter) with the simultaneous degradation of up to 800 mg/L of phenol. Upon growing the fungus and the bacterium together using an attached growth co-culture, the bacterium grew as a biofilm onto the fungus. The extracellularly produced Se(0) in the attached growth co-culture had a minimum diameter of 58.5 nm. This co-culture was able to degrade completely 50 mg/L phenol, but was completely inhibited at a phenol concentration of 200 mg/L.

Citations

Citations to this article as recorded by

Using Fungi in Artificial Microbial Consortia to Solve Bioremediation Problems
Elena Efremenko, Nikolay Stepanov, Olga Senko, Aysel Aslanli, Olga Maslova, Ilya Lyagin
Microorganisms.2024; 12(3): 470. CrossRef
Review on environmental selenium: Occurrence, public health implications and biological treatment strategies
Adhena Ayaliew Werkneh, Gebretsadkan Gebremedhin Gebretsadik, Shifare Berhe Gebru
Environmental Challenges.2023; 11: 100698. CrossRef
Simultaneous bioreduction of tellurite and selenite by Yarrowia lipolytica, Trichosporon cutaneum, and their co-culture along with characterization of biosynthesized Te–Se nanoparticles
Firooz Hosseini, Maryam Hadian, Elham Lashani, Hamid Moghimi
Microbial Cell Factories.2023;[Epub] CrossRef
Simultaneous bioremediation of phenol and tellurite by Lysinibacillus sp. EBL303 and characterization of biosynthesized Te nanoparticles
Firooz Hosseini, Elham Lashani, Hamid Moghimi
Scientific Reports.2023;[Epub] CrossRef
Selenium-Containing Nanostructures: Synthesis, Properties, and Agrochemical Aspects of Application (Review)
A. I. Perfileva
Nanobiotechnology Reports.2022; 17(2): 165. CrossRef
Biological selenate and selenite reduction by waste activated sludge using hydrogen as electron donor
Arindam Sinharoy, Piet N.L. Lens
Journal of Environmental Management.2022; 319: 115745. CrossRef
Leucobacter coleopterorum sp. nov., Leucobacter insecticola sp. nov., and Leucobacter viscericola sp. nov., isolated from the intestine of the diving beetles, Cybister brevis and Cybister lewisianus, and emended description of the genus Leucobacter
Dong-Wook Hyun, Hojun Sung, Pil Soo Kim, Ji-Hyun Yun, Jin-Woo Bae
Journal of Microbiology.2021; 59(4): 360. CrossRef
Biological Removal of Selenate and Selenite from Wastewater: Options for Selenium Recovery as Nanoparticles
Arindam Sinharoy, Piet N. L. Lens
Current Pollution Reports.2020; 6(3): 230. CrossRef

Transcriptomic and proteomic profiling revealed global changes in Streptococcus thermophilus during pH-controlled batch fermentations: Yali Qiao , Cong Leng , Gefei Liu , Yanjiao Zhang , Xuepeng Lv , Hongyu Chen , Jiahui Sun , Zhen Feng; J. Microbiol. 2019;57(9):769-780. Published online June 14, 2019; DOI: https://doi.org/10.1007/s12275-019-8604-y

346 View
0 Download
13 Web of Science
13 Crossref

Abstract PDF

Understanding global changes of physiological processes at the molecular level during the growth of Streptococcus thermophilus is essential for the rational design of cultivation media and the optimization of bioprocesses. Transcriptomics and proteomics were combined to investigate the global changes at the transcript and protein level during the growth of S. thermophilus. The expression of 1396 genes (FDR ≤ 0.001) and 876 proteins (P < 0.05) changed significantly over time. The most remarkable growth phase dependent changes occurred in the late-lag phase and were related to heterofermentation, glycolysis, peptidoglycan biosynthesis, conversion between amino acids and stress response. The present
results
could provide theoretical guidance for high-cell-density culture, help design cultivation media, and help attain a high biomass of S. thermophilus.

Citations

Citations to this article as recorded by

The dual nature of plant growth-promoting bacteria: Benefits, risks, and pathways to sustainable deployment
Hassan Etesami
Current Research in Microbial Sciences.2025; 9: 100421. CrossRef
Metabolic and Transcriptomic-Based Characterization of Streptococcus salivarius ssp. thermophilus Snew Fermentation in Milk
Ye Wang, Haijie Zhao, Huilin Zhang, Baochao Hou, Weilian Hung, Jian He, Chao Liang, Baolei Li, Chaoxin Man, Yujun Jiang, Yu Zhang, Ling Guo
Foods.2025; 14(3): 530. CrossRef
The contribution of microorganisms to sustainable development: towards a green future through synthetic biology and systems biology
Alaa T. Qumsani
Journal of Umm Al-Qura University for Applied Sciences.2024;[Epub] CrossRef
Multi-omics analysis for mechanistic understanding of microbial-mediated synthesis of silver nanoparticles
Wenjing Liu, Aofan Wang, Xitong Li, Jishi Wang, Xiaowei Liu, Yujie Zhao, Zeying He, Jingjing Du
Chemical Engineering Journal.2024; 497: 154410. CrossRef
Arginine deiminase pathway of Tetragenococcus halophilus contributes to improve the acid tolerance of lactic acid bacteria
Huan Yang, Dingkang Wang, Yao Jin, Rongqing Zhou, Jun Huang, Chongde Wu
Food Microbiology.2023; 113: 104281. CrossRef
Current advances for omics-guided process optimization of microbial manufacturing
Shengtong Wan, Xin Liu, Wentao Sun, Bo Lv, Chun Li
Bioresources and Bioprocessing.2023;[Epub] CrossRef
Proteomic perspectives on thermotolerant microbes: an updated review
Chandraprakash Yamini, Govindasamy Sharmila, Chandrasekaran Muthukumaran, Kumar Pavithran, Narasimhan Manojkumar
Molecular Biology Reports.2022; 49(1): 629. CrossRef
Comparative transcriptome analysis for the biosynthesis of antioxidant exopolysaccharide in Streptococcus thermophilusCS6
Yang Zhou, Yanhua Cui, Xiaojun Qu
Journal of the Science of Food and Agriculture.2022; 102(12): 5321. CrossRef
Genome-Scale Metabolic Modeling Combined with Transcriptome Profiling Provides Mechanistic Understanding of Streptococcus thermophilus CH8 Metabolism
Martin H. Rau, Paula Gaspar, Maiken Lund Jensen, Asger Geppel, Ana Rute Neves, Ahmad A. Zeidan, Danilo Ercolini
Applied and Environmental Microbiology.2022;[Epub] CrossRef
Foodomic-Based Approach for the Control and Quality Improvement of Dairy Products
Rubén Agregán, Noemí Echegaray, Asad Nawaz, Christophe Hano, Gholamreza Gohari, Mirian Pateiro, José M. Lorenzo
Metabolites.2021; 11(12): 818. CrossRef
Milk Fermentation by Lacticaseibacillus rhamnosus GG and Streptococcus thermophilus SY-102: Proteolytic Profile and ACE-Inhibitory Activity
Jessica Lizbeth Sebastián-Nicolas, Elizabeth Contreras-López, Juan Ramírez-Godínez, Alma Elizabeth Cruz-Guerrero, Gabriela Mariana Rodríguez-Serrano, Javier Añorve-Morga, Judith Jaimez-Ordaz, Araceli Castañeda-Ovando, Emmanuel Pérez-Escalante, Alexis Ayal
Fermentation.2021; 7(4): 215. CrossRef
Regulatory Mechanisms of L-Lactic Acid and Taste Substances in Chinese Acid Rice Soup (Rice-Acid) Fermented With a Lacticaseibacillus paracasei and Kluyveromyces marxianus
Na Liu, Likang Qin, Song Miao
Frontiers in Microbiology.2021;[Epub] CrossRef
Metabolic Pathway Profiling in Intracellular and Extracellular Environments of Streptococcus thermophilus During pH-Controlled Batch Fermentations
Yali Qiao, Gefei Liu, Xuepeng Lv, Xuejing Fan, Yanjiao Zhang, Li Meng, Mingzhi Ai, Zhen Feng
Frontiers in Microbiology.2020;[Epub] CrossRef

Trophic strategy of diverse methanogens across a river-to-sea gradient: Bingchen Wang , Fanghua Liu , Shiling Zheng , Qinqin Hao; J. Microbiol. 2019;57(6):470-478. Published online May 27, 2019; DOI: https://doi.org/10.1007/s12275-019-8482-3

290 View
0 Download
13 Web of Science
13 Crossref

Abstract PDF

Methanogens are an important biogenic source of methane, especially in estuarine waters across a river-to-sea gradient. However, the diversity and trophic strategy of methanogens in this gradient are not clear. In this study, the diversity and trophic strategy of methanogens in sediments across the Yellow River (YR) to the Bohai Sea (BS) gradient were investigated by high-throughput sequencing based on the 16S rRNA gene. The results showed that the diversity of methanogens in sediments varied from multitrophic communities in YR samples to specific methylotrophic communities in BS samples. The methanogenic community in YR samples was dominated by Methanosarcina, while that of BS samples was dominated by methylotrophic Methanococcoides. The distinct methanogens suggested that the methanogenic community of BS sediments did not originate from YR sediment input. High-throughput sequencing of the mcrA gene revealed that active Methanococcoides dominated in the BS enrichment cultures with trimethylamine as the substrate, and methylotrophic Methanolobus dominated in the YR enrichment cultures, as detected to a limited amount in in situ sediment samples. Methanosarcina were also detected in this gradient sample. Furthermore, the same species of Methanosarcina mazei, which was widely distributed, was isolated from the area across a river-to-sea gradient by the culture-dependent
method
. In summary, our results showed that a distribution of diverse methanogens across a river-to-sea gradient may shed light on adaption strategies and survival mechanisms in methanogens.

Citations

Citations to this article as recorded by

Assessment of three prokaryote primers for concurrent and comprehensive profiling of methanogen and methanotroph community and habitat specificity in three distinct wetland sediments
Kavita Kumari, Malay Naskar, Md. Aftabuddin, Uttam Kumar Sarkar, Subir Kumar Nag, Bandana Das Ghosh, Basanta Kumar Das
Journal of Soils and Sediments.2025; 25(6): 2112. CrossRef
Methanogenic symbionts of anaerobic ciliates are host and habitat specific
Daniel Méndez-Sánchez, Anna Schrecengost, Johana Rotterová, Kateřina Koštířová, Roxanne A Beinart, Ivan Čepička
The ISME Journal.2024;[Epub] CrossRef
Methylmercury cycling in the Bohai Sea and Yellow Sea: Reasons for the low system efficiency of methylmercury production
Lufeng Chen, Guoyi Cheng, Zhengwen Zhou, Yong Liang, Zhijia Ci, Yongguang Yin, Guangliang Liu, Yong Cai, Yanbin Li
Water Research.2024; 258: 121792. CrossRef
Methylotrophic substrates stimulated higher methane production than competitive substrates in mangrove sediments
Weiling Dong, Jinjie Zhou, Cui-Jing Zhang, Qin Yang, Meng Li
Science of The Total Environment.2024; 951: 175677. CrossRef
Year-around survey and manipulation experiments reveal differential sensitivities of soil prokaryotic and fungal communities to saltwater intrusion in Florida Everglades wetlands
Jun Zhao, Seemanti Chakrabarti, Randolph Chambers, Pamela Weisenhorn, Rafael Travieso, Sandro Stumpf, Emily Standen, Henry Briceno, Tiffany Troxler, Evelyn Gaiser, John Kominoski, Braham Dhillon, Willm Martens-Habbena
Science of The Total Environment.2023; 858: 159865. CrossRef
Metatranscriptomics reveals different features of methanogenic archaea among global vegetated coastal ecosystems
Mingwei Cai, Xiuran Yin, Xiaoyu Tang, Cuijing Zhang, Qingfei Zheng, Meng Li
Science of The Total Environment.2022; 802: 149848. CrossRef
Improving soil fertility by driving microbial community changes in saline soils of Yellow River Delta under petroleum pollution
Bingchen Wang, Shaoping Kuang, Hongbo Shao, Fei Cheng, Huihui Wang
Journal of Environmental Management.2022; 304: 114265. CrossRef
Differences in the methanogen community between the nearshore and offshore sediments of the South Yellow Sea
Ye Chen, Yu Zhen, Jili Wan, Xia Yin, Siqi Li, Jiayin Liu, Guodong Zhang, Tiezhu Mi
Journal of Microbiology.2022; 60(8): 814. CrossRef
Methanogenesis pathways of methanogens and their responses to substrates and temperature in sediments from the South Yellow Sea
Ye Chen, Nengyou Wu, Changling Liu, Tiezhu Mi, Jing Li, Xingliang He, Siqi Li, Zhilei Sun, Yu Zhen
Science of The Total Environment.2022; 815: 152645. CrossRef
Complete Genome Sequence of Methanobacterium electrotrophus Strain YSL, Isolated from Coastal Riverine Sediments
Shiling Zheng, Fanghua Liu, Frank J. Stewart
Microbiology Resource Announcements.2021;[Epub] CrossRef
Niche Differentiation of Sulfate- and Iron-Dependent Anaerobic Methane Oxidation and Methylotrophic Methanogenesis in Deep Sea Methane Seeps
Haizhou Li, Qunhui Yang, Huaiyang Zhou
Frontiers in Microbiology.2020;[Epub] CrossRef
Exploring Sources and Biogeochemical Dynamics of Dissolved Methane in the Central Bohai Sea in Summer
Yong Zhang, Bing Chen, Wei-dong Zhai
Frontiers in Marine Science.2020;[Epub] CrossRef
Effects of Organic Phosphorus on Methylotrophic Methanogenesis in Coastal Lagoon Sediments With Seagrass (Zostera marina) Colonization
Shiling Zheng, Bingchen Wang, Gang Xu, Fanghua Liu
Frontiers in Microbiology.2020;[Epub] CrossRef

Assembly mechanisms of soil bacterial communities in subalpine coniferous forests on the Loess Plateau, China: Pengyu Zhao , Jinxian Liu , Tong Jia , Zhengming Luo , Cui Li , Baofeng Chai; J. Microbiol. 2019;57(6):461-469. Published online May 27, 2019; DOI: https://doi.org/10.1007/s12275-019-8373-7

328 View
0 Download
8 Web of Science
8 Crossref

Abstract PDF

Microbial community assembly is affected by trade-offs between deterministic and stochastic processes. However, the mechanisms underlying the relative influences of the two processes remain elusive. This knowledge gap limits our ability to understand the effects of community assembly processes on microbial community structures and functions. To better understand community assembly mechanisms, the community dynamics of bacterial ecological groups were investigated based on niche breadths in 23 soil plots from subalpine coniferous forests on the Loess Plateau in Shanxi, China. Here, the overall community was divided into the ecological groups that corresponded to habitat generalists, ‘other taxa’ and specialists. Redundancy analysis based on Bray-Curtis distances (db-RDA) and multiple regression tree (MRT) analysis indicated that soil organic carbon (SOC) was a general descriptor that encompassed the environmental gradients by which the communities responded to, because it can explain more significant variations in community diversity patterns. The three ecological groups exhibited different niche optima and degrees of specialization (i.e., niche breadths) along the SOC gradient, suggesting the presence of a gradient in tolerance for environmental heterogeneity. The inferred community assembly processes varied along the SOC gradient, wherein a transition was observed from homogenizing dispersal to variable selection that reflects increasing deterministic processes. Moreover, the ecological groups were inferred to perform different community functions that varied with community composition, structure. In conclusion, these results contribute to our understanding of the trade-offs between community assembly mechanisms and the responses of community structure and function to environmental gradients.

Citations

Citations to this article as recorded by

Effects of Thinning of the Infected Trees and Cultivating of the Resistant Pines on Soil Microbial Diversity and Function
Xiaorui Zhang, Zhuo Liu, Mu Cao, Tingting Dai
Forests.2025; 16(5): 813. CrossRef
The restoration of soil multifunctionality in the later stages of biocrust succession is related to bacterial niche expansion: a case study of ion-adsorption rare earth tailings in southern China
Sheng Xu, Shifeng Sun, Huimin Qiu, Dan Lu, Yizhen Liu, Jun Ye, Hui Zhong, Tao Wang, Yanan Zhang, Lan Wu, Chi Yao, Qiying Cai, Gang Ge
Plant and Soil.2025; 513(2): 2553. CrossRef
Stochastic Processes Dominate the Assembly of Soil Bacterial Communities of Land Use Patterns in Lesser Khingan Mountains, Northeast China
Junnan Ding, Shaopeng Yu
Life.2024; 14(11): 1407. CrossRef
Diversity, composition, metabolic characteristics, and assembly process of the microbial community in sewer system at the early stage
Yiming Yuan, Guangyi Zhang, Hongyuan Fang, Haifeng Guo, Yongkang Li, Zezhuang Li, Siwei Peng, Fuming Wang
Environmental Science and Pollution Research.2024; 31(9): 13075. CrossRef
Community assembly of bacterial generalists and specialists and their network characteristics in different altitudinal soils on Fanjing Mountain in Southwest China
Zhenming Zhang, Xianliang Wu, Jiachun Zhang, Yingying Liu, Wenmin Luo, Guiting Mou
CATENA.2024; 238: 107863. CrossRef
Ammonia-oxidizing archaea adapted better to the dark, alkaline oligotrophic karst cave than their bacterial counterparts
Qing Li, Xiaoyu Cheng, Xiaoyan Liu, Pengfei Gao, Hongmei Wang, Chuntian Su, Qibo Huang
Frontiers in Microbiology.2024;[Epub] CrossRef
Full-length 16S rRNA gene sequencing reveals the operating mode and chlorination-aggravated SWRO biofouling at a nuclear power plant
Kaijia Ren, Hongxia Ming, Siyu Liu, Xianlong Lang, Yuan Jin, Jingfeng Fan
Water Science & Technology.2024; 90(1): 1. CrossRef
Kalidium cuspidatum colonization changes the structure and function of salt crust microbial communities
Yaqing Pan, Peng Kang, Yaqi Zhang, Xinrong Li
Environmental Science and Pollution Research.2024; 31(13): 19764. CrossRef

Antimicrobial effect and proposed action mechanism of cordycepin against Escherichia coli and Bacillus subtilis: Qi Jiang , Zaixiang Lou , Hongxin Wang , Chen Chen; J. Microbiol. 2019;57(4):288-297. Published online March 30, 2019; DOI: https://doi.org/10.1007/s12275-019-8113-z

450 View
0 Download
47 Web of Science
46 Crossref

Abstract PDF

The detailed antibacterial mechanism of cordycepin efficacy against food-borne germs remains ambiguous. In this study, the antibacterial activity and action mechanism of cordycepin were assessed. The results showed that cordycepin effectively inhibited the growth of seven bacterial pathogens including both Gram-positive and Gram-negative bacterial pathogens; the minimum inhibitory concentrations (MIC) were 2.5 and 1.25 mg/ml against Escherichia coli and Bacillus subtilis, respectively. Scanning electron microscope and transmission electron microscope examination confirmed that cordycepin caused obvious damages in the cytoplasmatic membranes of both E. coli and B. subtilis. Outer membrane permeability assessment indicated the loss of barrier function and the leakage of cytoplasmic contents. Propidium iodide and carboxyfluorescein diacetate double staining approach coupled with flow cytometry analysis indicated that the integrity of cell membrane was severely damaged during a short time, while the intracellular enzyme system still remained active. This clearly suggested that membrane damage was one of the reasons for cordycepin efficacy against bacteria. Additionally, results from circular dichroism and fluorescence analysis indicated cordycepin could insert to genome DNA base and double strand, which disordered the structure of genomic DNA. Basis on these results, the mode of bactericidal action of cordycepin against E. coli and B. subtilis was found to be a dual mechanism, disrupting bacterial cell membranes and binding to bacterial genomic DNA to interfere in cellular functions, ultimately leading to cell death.

Citations

Citations to this article as recorded by

Research techniques for understanding food sterilization mechanism
Feifan Wang, Qian Wu, Xiaoran Hui, Minhui Zhu, Qin Wu, Pradeep K. Malakar, Yongheng Zhu, Yong Zhao, Zhaohuan Zhang
Food Control.2026; 179: 111517. CrossRef
Screening and evaluation of antibacterial active strains of Actinomycetes isolated from Northern Indian soil for biofilm inhibition against selected ESKAPE pathogens
Muzammil Sharief Dar, Iqbal Ahmad
Journal of Umm Al-Qura University for Applied Sciences.2025; 11(2): 340. CrossRef
16S amplicon sequencing and untargeted metabolomics reveal changes in rumen microorganisms and metabolic pathways involved in the reduction of methane by cordycepin
Haokai Ma, Dengke Liu, Rui Liu, Yang Li, Modinat Tolani Lambo, Baisheng Dai, Weizheng Shen, Yongli Qu, Yonggen Zhang
Journal of Integrative Agriculture.2025; 24(4): 1310. CrossRef
Substrate Influence on Yield and Biometabolite Production in the Caterpillar Medicinal Mushroom Cordyceps militaris (Ascomycetes)
Pavleen Kour, Moni Gupta, Sachin Gupta, Priti Sharma, Meh-Run-Nisa, Kamlesh Bali, Manmohan Sharma
International Journal of Medicinal Mushrooms.2025; 27(5): 53. CrossRef
Overexpression of Cordyceps militaris Cmcns1/cns2 gene to produce cordycepin results in increased resistance to Ralstonia solawacearum, Alternaria alternate and TMV in tobacco(Nicotiana tabacum L.)
Jie Tan, Tao Long, Juntao Song, Tianxiunan Pu, Yuanshuai Shi, Xu Luo, Yang Liu
Plant Science.2025; 359: 112597. CrossRef
Cordycepin affects Streptococcus mutans biofilm and interferes with its metabolism
Yidan Shao, Wenyan Zhu, Shanshan Liu, Kai Zhang, Yu Sun, Yudong Liu, Tingchi Wen, Yingxue Zou, Qingwei Zheng
BMC Oral Health.2025;[Epub] CrossRef
Molecular Engineering of Cordycepin Derivatives for Enhanced Biological Activity and Stability
Yiming Gu, Wei Yu, Xiang Li, Yingjie Fan, Yanan Liu, Jumreang Tummatorn, Siyu Jiang, Jingyue Yang
ChemMedChem.2025;[Epub] CrossRef
Effect of Cordyceps militaris Residue and Lactiplantibacillus plantarum on Fermentation Quality and Bacterial Community of Alfalfa Silage
Luheng Wei, Meirong Zhao, Jia Song, Duo Gao, Xinnan Li, Juanjuan Sun, Zhu Yu, Chunsheng Bai
Microorganisms.2025; 13(8): 1919. CrossRef
Prospects for cordycepin biosynthesis in microbial cell factories
Xiang Li, Rongshuai Jiang, Shenghou Wang, Chenyang Li, Yongping Xu, Shuying Li, Qian Li, Liang Wang
Frontiers in Chemical Engineering.2024;[Epub] CrossRef
Dopamine-grafted oxidized hyaluronic acid/gelatin/cordycepin nanofiber membranes modulate the TLR4/NF-kB signaling pathway to promote diabetic wound healing
Ning Wang, Bo Hong, Yingchun Zhao, Chuanbo Ding, Guodong Chai, Yue Wang, Jiali Yang, Lifeng Zhang, Weimin Yu, Yang Lu, Shuang Ma, Shuai Zhang, Xinglong Liu
International Journal of Biological Macromolecules.2024; 262: 130079. CrossRef
Research Progress in Understanding the Molecular Biology of Cordyceps militaris
Lihong Wang, Ganghua Li, Xueqin Tian, Yitong Shang, Huanhuan Yan, Lihua Yao, Zhihong Hu
Fermentation.2024; 10(3): 167. CrossRef
Cordycepin Enhanced Therapeutic Potential of Gemcitabine against Cholangiocarcinoma via Downregulating Cancer Stem-Like Properties
Hong Kyu Lee, Yun-Jung Na, Su-Min Seong, Dohee Ahn, Kyung-Chul Choi
Biomolecules & Therapeutics.2024; 32(3): 368. CrossRef
Cordycepin alleviates hepatic fibrosis in association with the inhibition of glutaminolysis to promote hepatic stellate cell senescence
Zhu Liang, Keyan Zhang, Hongli Guo, Xujiao Tang, Mingzhu Chen, Jinsong Shi, Jing Yang
International Immunopharmacology.2024; 132: 111981. CrossRef
Synergistic fermentation of Cordyceps militaris and herbal substrates boosts grower pig antioxidant and immune function
Chia-Chen Pi, Yu-Chieh Cheng, Chun-Chia Chen, Jai-Wei Lee, Chao-Nan Lin, Ming-Tang Chiou, Hui-Wen Chen, Chiu-Hsia Chiu
BMC Veterinary Research.2024;[Epub] CrossRef
Silkworm pupae globulin promotes Cordyceps militaris fermentation: Regulation of metabolic pathways enhances cordycepin synthesis and extends the synthesis phase
Yi-Tong Li, Hao-Tian Yao, Ze-Lai Huang, Lu-Chan Gong, Richard A. Herman, Fu-An Wu, Jun Wang
Food Bioscience.2024; 59: 103971. CrossRef
Promising ingredients used for kimchi fermentation: Effects of cordyceps militaris fermentation products on the over-acidification and quality of kimchi
Tiejun Chen, Dejian Jiao, Zhe Wang, Meizi Piao
Food Bioscience.2024; 61: 104941. CrossRef
Evidence for Regulation of Cordycepin Biosynthesis by Transcription Factors Krüppel-Like Factor 4 and Retinoid X Receptor Alpha in Caterpillar Medicinal Mushroom Cordyceps militaris (Ascomycetes)
Hucheng Zhang, Lina Deng, Shuai Luo, Linying Liu, Guowei Yang, Yuning Zhang, Bo Gao, Dongqing Yang, Xiaojie Wang, Shuangshi Li, Xingjuan Li, Yaguang Jiang, Wenyan Lao, Frank Vriesekoop
International Journal of Medicinal Mushrooms.2024; 26(10): 19. CrossRef
Ethanolic extract from fruiting bodies of Cordyceps militaris HL8 exhibits cytotoxic activities against cancer cells, skin pathogenic yeasts, and postharvest pathogen Penicillium digitatum
Tao Xuan Vu, Tram Bao Tran, Hong-Ha Vu, Yen Thi Hoang Le, Phu Hung Nguyen, Thao Thi Do, Thu-Huong Nguyen, Van-Tuan Tran
Archives of Microbiology.2024;[Epub] CrossRef
Enhancement of bioactive metabolites from solid-state fermentation of Cordyceps fungus using various substrates on ameliorating oxidative stress to liver health
Tin Ei Cho, Guoying Zhang, Jianya Ling
Journal of Industrial Microbiology and Biotechnology.2024;[Epub] CrossRef
Paecilomyces cicadae : a systematic overview of the biological activities and potential mechanisms of its active metabolites
Di Feiqian, Zhang Jiachan, Cheng Wenjing, Li Luyao, Li Meng, Wang Changtao
Food and Agricultural Immunology.2023;[Epub] CrossRef
Design, synthesis, antibacterial/antitumor activity and in vitro stability of novel cordycepin derivatives with unsaturated fatty acid chain
Shuhao Qu, Qiang Wang, Yanli Wang, Lihong Li, Lifei Zhu, Xiuhua Kuang, Xiaoli Wang, Huijuan Li, Longxuan Zhao, Hong Dai
European Journal of Pharmaceutical Sciences.2023; 187: 106466. CrossRef
Development of an efficient method for separation and purification of cordycepin from liquid fermentation of Cordyceps militaris and analysis of cordycepin antitumor activity
Peng-xiao Liu, Jie-xin Ma, Rui-na Liang, Xiang-wei He, Guo-zhu Zhao
Heliyon.2023; 9(3): e14184. CrossRef
A novel complementary pathway of cordycepin biosynthesis in Cordyceps militaris
Hucheng Zhang, Jun Yang, Shuai Luo, Linying Liu, Guowei Yang, Bo Gao, Haitao Fan, Lina Deng, Ming Yang
International Microbiology.2023; 27(4): 1009. CrossRef
Antifungal Mechanism of Cinnamon Essential Oil against Chinese Yam-Derived Aspergillus niger
Mingcheng Wang, Huiyuan Liu, Yuanyuan Dang, Dahong Li, Zhu Qiao, Gailing Wang, Guo Liu, Jin Xu, Enzhong Li, Anand Babu Perumal
Journal of Food Processing and Preservation.2023; 2023: 1. CrossRef
Characterization of a Plant Growth-Promoting Endohyphal Bacillus subtilis in Fusarium acuminatum from Spiranthes sinensis
LAN FANG, XIAO ZHENG, ZHENGXIANG SUN, YANYAN LI, JIANXIN DENG, YI ZHOU
Polish Journal of Microbiology.2023; 72(1): 29. CrossRef
Cordycepin: A review of strategies to improve the bioavailability and efficacy
Min Chen, Jiahao Luo, Wenming Jiang, Lijing Chen, Longxing Miao, Chunchao Han
Phytotherapy Research.2023; 37(9): 3839. CrossRef
Efficient de novo production of bioactive cordycepin by Aspergillus oryzae using a food-grade expression platform
Sukanya Jeennor, Jutamas Anantayanon, Sarocha Panchanawaporn, Chanikul Chutrakul, Wanwipa Vongsangnak, Kobkul Laoteng
Microbial Cell Factories.2023;[Epub] CrossRef
Effects of Acremonium terricola Culture on the Growth, Slaughter Yield, Immune Organ, Serum Biochemical Indexes, and Antioxidant Indexes of Geese
Jinyuan Chen, Yawen Guo, Yang Lu, Zhaoyuan He, Yali Zhu, Shuyu Liu, Kaizhou Xie
Animals.2022; 12(9): 1164. CrossRef
Plant and fungi derived analgesic natural products targeting voltage-gated sodium and calcium channels
Aida Calderon-Rivera, Santiago Loya-Lopez, Kimberly Gomez, Rajesh Khanna
Channels.2022; 16(1): 198. CrossRef
Multifunctional dynamic toolbox: cordycepin plays a therapeutic role in various disorders
Nur Syahirah H.S. Hadi, Anis A. Jamaludin, Tharani Kalaiyarasan, Kartikeya Tiwari
Reviews in Medical Microbiology.2022; 33(1): e23. CrossRef
Cordycepin exhibits anti-bacterial and anti-inflammatory effects against gastritis in Helicobacter pylori-infected mice
Wenjie Kong, Weidong Liu, Man Wang, Wenjia Hui, Yan Feng, Jiajie Lu, Buya Miranbieke, Huan Liu, Feng Gao
Pathogens and Disease.2022;[Epub] CrossRef
Gene rppA co-regulated by LRR, SigA, and CcpA mediates antibiotic resistance in Bacillus thuringiensis
Xia Cai, Xuelian Li, Jiaxin Qin, Yizhuo Zhang, Bing Yan, Jun Cai
Applied Microbiology and Biotechnology.2022; 106(17): 5687. CrossRef
Chinese Cordyceps: Bioactive Components, Antitumor Effects and Underlying Mechanism—A Review
Yan Liu, Zhi-Jian Guo, Xuan-Wei Zhou
Molecules.2022; 27(19): 6576. CrossRef
Gold nanoparticle-DNA aptamer-assisted delivery of antimicrobial peptide effectively inhibits Acinetobacter baumannii infection in mice
Jaeyeong Park, Eunkyoung Shin, Ji-Hyun Yeom, Younkyung Choi, Minju Joo, Minho Lee, Je Hyeong Kim, Jeehyeon Bae, Kangseok Lee
Journal of Microbiology.2022; 60(1): 128. CrossRef
Cordycepin enhances hyperthermia-induced apoptosis and cell cycle arrest by modulating the MAPK pathway in human lymphoma U937 cells
Liying Shi, He Cao, Siyu Fu, Zixian Jia, Xuan Lu, Zhengguo Cui, Dayong Yu
Molecular Biology Reports.2022; 49(9): 8673. CrossRef
Research Progress on Cordycepin Synthesis and Methods for Enhancement of Cordycepin Production in Cordyceps militaris
Li Wang, Huanhuan Yan, Bin Zeng, Zhihong Hu
Bioengineering.2022; 9(2): 69. CrossRef
Cordycepin as a Metabolite with Pharmacological Potential: A Review
Shivani Sharma, Kashish Madaan, Ravneet Kaur
International Journal of Medicinal Mushrooms.2022; 24(8): 1. CrossRef
Study on the Inhibitory Activity and Possible Mechanism of Myriocin on Clinically Relevant Drug-Resistant Candida albicans and Its Biofilms
Xin Yang, Zejun Pei, Renjing Hu, Zhehao Zhang, Zaixiang Lou, Xin Sun
Biological and Pharmaceutical Bulletin.2021; 44(3): 305. CrossRef
Label free-based proteomic analysis of the food spoiler Pseudomonas fluorescens response to lactobionic acid by SWATH-MS
Shimo Kang, Chunlei Shi, Jiang Chang, Fanhua Kong, Mohan Li, Boyuan Guan, Zhenghan Zhang, Xinyang Shi, Huiwen Zhao, Yanqi Peng, Yan Zheng, Xiqing Yue
Food Control.2021; 123: 107834. CrossRef
Isolation, identification, and control of a resistant bacterium strain found in Ku shui rose pure dew
Lijun Ling, Caiyun Yang, Wenxia Ma, Yunhua Zhao, Shenglai Feng, Yixin Tu, Nan Wang, Zibin Li, Lu Lu
Journal of Food Processing and Preservation.2021;[Epub] CrossRef
The Antibacterial Properties of 4, 8, 4′, 8′-Tetramethoxy (1,1′-biphenanthrene) -2,7,2′,7′-Tetrol from Fibrous Roots of Bletilla striata
Xue-Jiao Huang, Nan Xiong, Bo-Chen Chen, Fan Luo, Min Huang, Zhi-Shan Ding, Chao-Dong Qian
Indian Journal of Microbiology.2021; 61(2): 195. CrossRef
Drug Delivery of Natural Products Through Nanocarriers for Effective Breast Cancer Therapy: A Comprehensive Review of Literature
Kah Min Yap, Mahendran Sekar, Shivkanya Fuloria, Yuan Seng Wu, Siew Hua Gan, Nur Najihah Izzati Mat Rani, Vetriselvan Subramaniyan, Chandrakant Kokare, Pei Teng Lum, M Yasmin Begum, Shankar Mani, Dhanalekshmi Unnikrishnan Meenakshi, Kathiresan V Sathasiva
International Journal of Nanomedicine.2021; Volume 16: 7891. CrossRef
Evaluation of Anti-Biofilm Capability of Cordycepin Against Candida albicans
Yu Wang, Zejun Pei, Zaixiang Lou, Hongxin Wang
Infection and Drug Resistance.2021; Volume 14: 435. CrossRef
Enhanced production of cordycepin in Ophiocordyceps sinensis using growth supplements under submerged conditions
Vikas Kaushik, Amanvir Singh, Aditi Arya, Sangeeta Chahal Sindhu, Anil Sindhu, Ajay Singh
Biotechnology Reports.2020; 28: e00557. CrossRef
A How-To Guide for Mode of Action Analysis of Antimicrobial Peptides
Ann-Britt Schäfer, Michaela Wenzel
Frontiers in Cellular and Infection Microbiology.2020;[Epub] CrossRef
Synthesis of cordycepin: Current scenario and future perspectives
Liyang Yang, Guilan Li, Zhi Chai, Qiang Gong, Jianquan Guo
Fungal Genetics and Biology.2020; 143: 103431. CrossRef

Flavobacterium aquariorum sp. nov., isolated from freshwater of the North Han River: Yochan Joung , Hye-Jin Jang , Jaeho Song , Jang-Cheon Cho; J. Microbiol. 2019;57(5):343-349. Published online February 5, 2019; DOI: https://doi.org/10.1007/s12275-019-8436-9

326 View
0 Download
10 Web of Science
11 Crossref

Abstract PDF

A non-motile, yellow-pigmented bacterial strain, designated IMCC34762T, was isolated from a freshwater sample collected from Lake Cheongpyeong in Korea. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain IMCC- 34762T formed a lineage within the genus Flavobacterium and was most closely related to F. pectinovorum DSM 6368T (98.3% sequence similarity), followed by F. piscis CCUG 60099T (98.3%), F. branchiicola 59B-3-09T (98.2%), and F. saccharophilum DSM 1811T (98.2%). The average nucleotide identity and the genome-to-genome distance between strain IMCC34762T and the closely related strains were 61–62% and 26–27%, respectively, indicating that IMCC34762T is a novel species of the genus Flavobacterium. The major fatty acids (> 5%) of strain IMCC34762T were summed feature 3 (C16:1 ω6c and/or C16:1 ω7c, 17.3%), iso-C15:0 (15.0%), iso-C15:0 G (9.0%), C15:0 ω6c (7.4%), iso-C15:0 (7.4%), and iso-C16:0 (5.3%). The major respiratory quinone and polyamine were MK-6 and sym-homospermidine, respectively. The major polar lipids were phosphatidylethanolamine, an unidentified aminophospholipid, and an unidentified lipid. The DNA G+C content of strain IMCC34762T was 34.4 mol%. Based on the taxonomic data presented in this study, strain IMCC34762T represents a novel species within the genus Flavobacterium, for which the name Flavobacterium aquariorum, sp. nov. is proposed. The type strain is IMCC34762T (= KACC 19725T = NBRC 113425T).

Citations

Citations to this article as recorded by

Flavobacterium algoriphilum sp. nov., Flavobacterium arabinosi sp. nov., Flavobacterium cryoconiti sp. nov., Flavobacterium galactosi sp. nov., Flavobacterium melibiosi sp. nov., and Flavobacterium algoris sp. nov., six novel cold-adapted bacteria isolate
Lei-Lei Yang, Yu-Hua Xin, Qing Liu
BMC Microbiology.2025;[Epub] CrossRef
Flavobacterium anseongense sp. nov. and Flavobacterium wongokense sp. nov., isolated from freshwater and freshwater soil in South Korea
Jung-Hun Jo, Soon-Youl Lee, Se-Yoon Chun, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology .2025;[Epub] CrossRef
Unveiling the hidden threat: heavy metal accumulation in crops and soil microbial dynamics in a teaching experimental farmland
Xue Gu, Xuegang Yu, Qing Li, Yanjun Mao, Zhiwei Zhou, Huan Hu, Rui Huang, Jiayu Zhou, Yuanyi Sun, Yancheng Li, Aijiang Yang
Plant and Soil.2025;[Epub] CrossRef
Ten Novel Species Belonging to the Genus Flavobacterium, Isolated from Freshwater Environments: F. praedii sp. nov., F. marginilacus sp. nov., F. aestivum sp. nov., F. flavigenum sp. nov., F. luteolum sp. nov., F. gelatinilyticum sp. nov., F. aquiphilum s
Hyunyoung Jo, Miri S. Park, Yeonjung Lim, Ilnam Kang, Jang-Cheon Cho
Journal of Microbiology.2023; 61(5): 495. CrossRef
Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead)
Seomin Kang, Jae-Yun Lee, Jeong Eun Han, Yun-Seok Jeong, Do-Hun Gim, Jin-Woo Bae
Journal of Microbiology.2022; 60(9): 890. CrossRef
Flavobacterium erciyesense sp. nov., a putative non-pathogenic fish symbiont
Izzet Burcin Saticioglu
Archives of Microbiology.2021; 203(9): 5783. CrossRef
Flavobacterium muglaense sp. nov. isolated from internal organs of apparently healthy rainbow trout
Muhammed Duman, Hilal Ay, Soner Altun, Nevzat Sahin, Izzet Burcin Saticioglu
International Journal of Systematic and Evolutionary Microbiology.2021;[Epub] CrossRef
Flavobacterium turcicum sp. nov. and Flavobacterium kayseriense sp. nov. isolated from farmed rainbow trout in Turkey
Izzet Burcin Saticioglu, Hilal Ay, Soner Altun, Muhammed Duman, Nevzat Sahin
Systematic and Applied Microbiology.2021; 44(2): 126186. CrossRef
Flavobacterium bernardetii sp. nov., a possible emerging pathogen of farmed rainbow trout (Oncorhynchus mykiss) in cold water
Izzet Burcin Saticioglu, Hilal Ay, Soner Altun, Nevzat Sahin, Muhammed Duman
Aquaculture.2021; 540: 736717. CrossRef
List of new names and new combinations previously effectively, but not validly, published
Aharon Oren, George Garrity
International Journal of Systematic and Evolutionary Microbiology .2020; 70(7): 4043. CrossRef
Rhodoferax lacus sp. nov., isolated from a large freshwater lake
Miri Park, Jaeho Song, Gi Gyun Nam, Jang-Cheon Cho
International Journal of Systematic and Evolutionary Microbiology .2019; 69(10): 3135. CrossRef

Review

MINIREVIEW] Dynamics of microbial communities and CO2 and CH4 fluxes in the tundra ecosystems of the changing Arctic: Min Jung Kwon , Ji Young Jung , Binu M. Tripathi , Mathias Göckede , Yoo Kyung Lee , Mincheol Kim; J. Microbiol. 2019;57(5):325-336. Published online January 16, 2019; DOI: https://doi.org/10.1007/s12275-019-8661-2

347 View
0 Download
19 Web of Science
20 Crossref

Abstract PDF

Arctic tundra ecosystems are rapidly changing due to the amplified effects of global warming within the northern high latitudes. Warming has the potential to increase the thawing of the permafrost and to change the landscape and its geochemical characteristics, as well as terrestrial biota. It is important to investigate microbial processes and community structures, since soil microorganisms play a significant role in decomposing soil organic carbon in the Arctic tundra. In addition, the feedback from tundra ecosystems to climate change, including the emission of greenhouse gases into the atmosphere, is substantially dependent on the compositional and functional changes in the soil microbiome. This article reviews the current state of knowledge of the soil microbiome and the two most abundant greenhouse gas (CO2 and CH4) emissions, and summarizes permafrost thaw-induced changes in the Arctic tundra. Furthermore, we discuss future directions in microbial ecological research coupled with its link to CO2 and CH4 emissions.

Citations

Citations to this article as recorded by

Arctic tundra soil depth, more than seasonality, determines active layer bacterial community variation down to the permafrost transition
Casper T. Christiansen, Katja Engel, Michael Hall, Josh D. Neufeld, Virginia K. Walker, Paul Grogan
Soil Biology and Biochemistry.2025; 200: 109624. CrossRef
Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soils
Tatiana Demina, Heli Marttila, Igor S. Pessi, Minna K. Männistö, Bas E. Dutilh, Simon Roux, Jenni Hultman
Microbiome.2025;[Epub] CrossRef
Methane emission hotspots in a boreal forest-fen mosaic potentially linked to deep taliks
Mary Farina, William Christian, Nicholas Hasson, Timothy McDermott, Scott Powell, Roland Hatzenpichler, Hailey Webb, Gage LaRue, Kyoko Okano, Eric A Sproles, Jennifer D Watts
Environmental Research Letters.2025; 20(10): 104029. CrossRef
The effect of temperature on the activity of microorganisms in the area of the Bureiskiy Landslide
L. М. Kondratyeva, D. V. Andreeva, Z. N. Litvinenko, E. M. Golubeva
Biologiâ vnutrennih vod.2024; 17(5): 713. CrossRef
Effect of Temperature on the Activity of Microorganisms in the Area of the Bureiskiy Landslide
L. M. Kondratyeva, D. V. Andreeva, Z. N. Litvinenko, E. M. Golubeva
Inland Water Biology.2024; 17(5): 733. CrossRef
Effects of nitrogen and phosphorus additions on CH4 flux in wet meadow of Qinghai-Tibet Plateau
Jiangqi Wu, Yanhua Lu, Haiyan Wang, Guang Li
Science of The Total Environment.2023; 887: 163448. CrossRef
Root exclusion methods for partitioning of soil respiration: Review and methodological considerations
Mei-Yee CHIN, Sharon Yu Ling LAU, Frazer MIDOT, Mui Sie JEE, Mei Lieng LO, Faustina E. SANGOK, Lulie MELLING
Pedosphere.2023; 33(5): 683. CrossRef
Eurypsychrophilic acidophiles: From (meta)genomes to low-temperature biotechnologies
Mark Dopson, Carolina González-Rosales, David S. Holmes, Nadia Mykytczuk
Frontiers in Microbiology.2023;[Epub] CrossRef
Distinct Growth Responses of Tundra Soil Bacteria to Short-Term and Long-Term Warming
Jeffrey R. Propster, Egbert Schwartz, Michaela Hayer, Samantha Miller, Victoria Monsaint-Queeney, Benjamin J. Koch, Ember M. Morrissey, Michelle C. Mack, Bruce A. Hungate, John R. Spear
Applied and Environmental Microbiology.2023;[Epub] CrossRef
Effect of Low Temperature and Municipal Wastewater Organic Loading on Anaerobic Granule Reactor Performance
Anissa Sukma Safitri, Krista Michelle Michelle Kaster, Roald Kommedal
SSRN Electronic Journal .2022;[Epub] CrossRef
Microbiogeochemical Traits to Identify Nitrogen Hotspots in Permafrost Regions
Claudia Fiencke, Maija E. Marushchak, Tina Sanders, Rica Wegner, Christian Beer
Nitrogen.2022; 3(3): 458. CrossRef
Response of vegetation and carbon fluxes to brown lemming herbivory in northern Alaska
Jessica Plein, Rulon W. Clark, Kyle A. Arndt, Walter C. Oechel, Douglas Stow, Donatella Zona
Biogeosciences.2022; 19(11): 2779. CrossRef
Changes in the microbial community structure triggered by permafrost peat thawing
V A Nikitkin, L G Kolesnichenko, E G Nikitkina, A V Pivovarova, E Kostenko, I V Lushchaeva
IOP Conference Series: Earth and Environmental Science.2021; 928(1): 012008. CrossRef
Impacts of Permafrost Degradation on Carbon Stocks and Emissions under a Warming Climate: A Review
Huijun Jin, Qiang Ma
Atmosphere.2021; 12(11): 1425. CrossRef
The Cold Region Critical Zone in Transition: Responses to Climate Warming and Land Use Change
Kunfu Pi, Magdalena Bieroza, Anatoli Brouchkov, Weitao Chen, Louis J.P. Dufour, Konstantin B. Gongalsky, Anke M. Herrmann, Eveline J. Krab, Catherine Landesman, Anniet M. Laverman, Natalia Mazei, Yuri Mazei, Mats G. Öquist, Matthias Peichl, Sergey Pozdnia
Annual Review of Environment and Resources.2021; 46(1): 111. CrossRef
Impacts of climate-induced permafrost degradation on vegetation: A review
Xiao-Ying Jin, Hui-Jun Jin, Go Iwahana, Sergey S. Marchenko, Dong-Liang Luo, Xiao-Ying Li, Si-Hai Liang
Advances in Climate Change Research.2021; 12(1): 29. CrossRef
WETMETH 1.0: a new wetland methane model for implementation in Earth system models
Claude-Michel Nzotungicimpaye, Kirsten Zickfeld, Andrew H. MacDougall, Joe R. Melton, Claire C. Treat, Michael Eby, Lance F. W. Lesack
Geoscientific Model Development.2021; 14(10): 6215. CrossRef
Operational Analysis and Medium-Term Forecasting of the Greenhouse Gas Generation Intensity in the Cryolithozone
Andrey V. Timofeev, Viktor Y. Piirainen, Vladimir Y. Bazhin, Aleksander B. Titov
Atmosphere.2021; 12(11): 1466. CrossRef
The Effect of Nitrogen Content on Archaeal Diversity in an Arctic Lake Region
Jinjiang Lv, Feng Liu, Wenbing Han, Yu Wang, Qian Zhu, Jiaye Zang, Shuang Wang, Botao Zhang, Nengfei Wang
Microorganisms.2019; 7(11): 543. CrossRef
Distinct Taxonomic and Functional Profiles of the Microbiome Associated With Different Soil Horizons of a Moist Tussock Tundra in Alaska
Binu M. Tripathi, Hye Min Kim1, Ji Young Jung, Sungjin Nam, Hyeon Tae Ju, Mincheol Kim, Yoo Kyung Lee
Frontiers in Microbiology.2019;[Epub] CrossRef

Journal Articles

Temporal and spatial impact of Spartina alterniflora invasion on methanogens community in Chongming Island, China: Xue Ping Chen , Jing Sun , Yi Wang , Heng Yang Zhang , Chi Quan He , Xiao Yan Liu , Nai Shun Bu , Xi-En Long; J. Microbiol. 2018;56(7):507-515. Published online June 14, 2018; DOI: https://doi.org/10.1007/s12275-018-8062-y

326 View
0 Download
12 Crossref

Abstract PDF

Methane production by methanogens in wetland is recognized as a significant contributor to global warming. Spartina alterniflora (S. alterniflora), which is an invasion plant in China’s wetland, was reported to have enormous effects on methane production. But studies on shifts in the methanogen community in response to S. alterniflora invasion at temporal and spatial scales in the initial invasion years are rare. Sediments derived from the invasive species S. alterniflora and the native species Phragmites australis (P. australis) in pairwise sites and an invasion chronosequence patch (4 years) were analyzed to investigate the abundance and community structure of methanogens using quantitative real-time PCR (qPCR) and Denaturing gradient gel electrophoresis (DGGE) cloning of the methyl-coenzyme M reductase A (mcrA) gene. For the pairwise sites, the abundance of methanogens in S. alterniflora soils was lower than that of P. australis soils. For the chronosequence patch, the abundance and diversity of methanogens was highest in the soil subjected to two years invasion, in which we detected some rare groups including Methanocellales and Methanococcales. These results indicated a priming effect at the initial invasion stages of S. alterniflora for microorganisms in the soil, which was also supported by the diverse root exudates. The shifts of methanogen communities after S. alterniflora invasion were due to changes in pH, salinity and sulfate. The results indicate that root exudates from S. alterniflora have a priming effect on methanogens in the initial years after invasion, and the predominate methylotrophic groups (Methanosarcinales) may adapt to the availability of diverse substrates and reflects the potential for high methane production after invasion by S. alterniflora.

Citations

Citations to this article as recorded by

Stronger increase of methane emissions from coastal wetlands by non‐native Spartina alterniflora than non‐native Phragmites australis
Andrea Fuchs, Ian C. Davidson, J. Patrick Megonigal, John L. Devaney, Christina Simkanin, Genevieve L. Noyce, Meng Lu, Grace M. Cott
PLANTS, PEOPLE, PLANET.2025; 7(1): 62. CrossRef
Effects of vegetation expansion on morphodynamics of tidal channel networks
Yin Zuo, Leihua Zhao, Xinchen Wang, Pei Xin
Earth Surface Processes and Landforms.2025;[Epub] CrossRef
Rapid and automated mapping method of Spartina alterniflora combines tidal imagery and phenological characteristics
Ruilin Wang, Yanan Su, Xiaofang Sun, Meng Wang, Min Feng
Environmental Monitoring and Assessment.2025;[Epub] CrossRef
Predictions of Spartina alterniflora leaf functional traits based on hyperspectral data and machine learning models
Wei Li, Xueyan Zuo, Zhijun Liu, Leichao Nie, Huazhe Li, Junjie Wang, Zhiguo Dou, Yang Cai, Xiajie Zhai, Lijuan Cui
European Journal of Remote Sensing.2024;[Epub] CrossRef
Salt marsh soil organic carbon is regulated by drivers of microbial activity
Hailey Erb, Ashley Keiser, Kristen M DeAngelis
Sustainable Microbiology.2024;[Epub] CrossRef
Asymmetric responses of functional microbes in methane and nitrous oxide emissions to plant invasion: A meta-analysis
Yanzhong Yao, Youtao Song, Pinjie Su, Jing Wang, Congke Miao, Yifu Luo, Qiqi Sun, Jiale Wang, Guohui Zhang, Naishun Bu, Zhaolei Li
Soil Biology and Biochemistry.2023; 178: 108931. CrossRef
Increasing coastal reclamation by Invasive alien plants and coastal armoring threatens the ecological sustainability of coastal wetlands
Jian Li, Zhanrui Leng, Taitiya Kenneth Yuguda, Lili Wei, Jiaojiao Xia, Chongyu Zhuo, Ziying Nie, Daolin Du
Frontiers in Marine Science.2023;[Epub] CrossRef
Spartina alterniflora Invaded Coastal Wetlands by Raising Soil Sulfur Contents: A Meta-Analysis
Zhenzhen Zhao, Liyu Cheng, Chiquan He, Feifei Wang, Jialin Liu, Yuanhang Li, Xueping Chen, Xiaoyan Liu, Gaoming Lv, Daoyuan Wang
Water.2022; 14(10): 1633. CrossRef
Exogenous nitrogen from riverine exports promotes soil methane production in saltmarshes in China
Chenhao Zhou, Yan Zhang, Songshuo Li, Qiuyue Jiang, Hongyang Chen, Ting Zhu, Xiao Xu, Hao Liu, Shiyun Qiu, Jihua Wu, Ming Nie, Bo Li
Science of The Total Environment.2022; 838: 156203. CrossRef
Exogenous Nitrogen from Riverine Exports Promotes Soil Methane Production in Saltmarshes in China
Chenhao Zhou, Yan Zhang, Songshuo Li, Qiuyue Jiang, Hongyang Chen, Ting Zhu, Xiao Xu, Hao Liu, Shi-Yun Qiu, Jihua Wu, Ming Nie, Bo Li
SSRN Electronic Journal .2021;[Epub] CrossRef
Spartina alterniflora raised soil sulfide content by regulating sulfur cycle-associated bacteria in the Jiuduansha Wetland of China
Chiquan He, Liyu Cheng, Daoyuan Wang, Zhenzhen Zhao, Zhengyu Wang, Feifei Wang, Xiaoxi Wang, Pu Zhang, Xueping Chen, Xiaoyan Liu
Plant and Soil.2021; 469(1-2): 107. CrossRef
The linkage between methane production activity and prokaryotic community structure in the soil within a shale gas field in China
Yan-Qin Wang, Guang-Quan Xiao, Yong-Yi Cheng, Ming-Xia Wang, Bo-Ya Sun, Zhi-Feng Zhou
Environmental Science and Pollution Research.2020; 27(7): 7453. CrossRef

The crystal structure of methanol dehydrogenase, a quinoprotein from the marine methylotrophic bacterium Methylophaga aminisulfidivorans MPT: Thinh-Phat Cao , Jin Myung Choi , Si Wouk Kim , Sung Haeng Lee; J. Microbiol. 2018;56(4):246-254. Published online February 28, 2018; DOI: https://doi.org/10.1007/s12275-018-7483-y

305 View
0 Download
13 Crossref

Abstract PDF

The first crystal structure of a pyrroloquinoline quinone (PQQ)-dependent methanol dehydrogenase (MDH) from a marine methylotrophic bacterium, Methylophaga aminisulfidivorans MPT (MDHMas), was determined at 1.7 Å resolution. The active form of MDHMas (or MDHIMas) is a heterotetrameric α2β2, where each β-subunit assembles on one side of each of the α-subunits, in a symmetrical fashion, so that two β-subunits surround the two PQQ-binding pockets on the α-subunits. The active site consists of a PQQ molecule surrounded by a β-propeller fold for each α-subunit. Interestingly, the PQQ molecules are coordinated by a Mg2+ ion, instead of the Ca2+ ion that is commonly found in the terrestrial MDHI, indicating the efficiency of osmotic balance regulation in the high salt environment. The overall interaction of the β-subunits with the α-subunits appears tighter than that of terrestrial homologues, suggesting the efficient maintenance of MDHIMas integrity in the sea water environment to provide a firm basis for complex formation with MxaJMas or Cyt cL. With the help of the features mentioned above, our research may enable the elucidation of the full molecular mechanism of methanol oxidation by taking advantage of marine bacterium-originated proteins in the methanol oxidizing system (mox), including MxaJ, as the attainment of these proteins from terrestrial bacteria for structural studies has not been successful.

Citations

Citations to this article as recorded by

Computational insights into the molecular dynamics of the binding of ligands in the methanol dehydrogenase
One-Sun Lee, Sung Haeng Lee
Chemistry Letters.2024;[Epub] CrossRef
Formaldehyde: An Essential Intermediate for C1 Metabolism and Bioconversion
Mengshi Jia, Mengge Liu, Jiawen Li, Wankui Jiang, Fengxue Xin, Wenming Zhang, Yujia Jiang, Min Jiang
ACS Synthetic Biology.2024; 13(11): 3507. CrossRef
Unveiling the Secrets of Calcium-Dependent Proteins in Plant Growth-Promoting Rhizobacteria: An Abundance of Discoveries Awaits
Betina Cecilia Agaras, Cecilia Eugenia María Grossi, Rita María Ulloa
Plants.2023; 12(19): 3398. CrossRef
The biochemistry of lanthanide acquisition, trafficking, and utilization
Emily R. Featherston, Joseph A. Cotruvo
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research.2021; 1868(1): 118864. CrossRef
Bioinorganic insights of the PQQ-dependent alcohol dehydrogenases
Pedro D. Sarmiento-Pavía, Martha E. Sosa-Torres
JBIC Journal of Biological Inorganic Chemistry.2021; 26(2-3): 177. CrossRef
Bioinformatic analysis of subfamily-specific regions in 3D-structures of homologs to study functional diversity and conformational plasticity in protein superfamilies
Daria Timonina, Yana Sharapova, Vytas Švedas, Dmitry Suplatov
Computational and Structural Biotechnology Journal.2021; 19: 1302. CrossRef
Methanol Dehydrogenases as a Key Biocatalysts for Synthetic Methylotrophy
Thien-Kim Le, Yu-Jin Lee, Gui Hwan Han, Soo-Jin Yeom
Frontiers in Bioengineering and Biotechnology.2021;[Epub] CrossRef
Lanthanide-dependent alcohol dehydrogenases require an essential aspartate residue for metal coordination and enzymatic function
Nathan M. Good, Matthias Fellner, Kemal Demirer, Jian Hu, Robert P. Hausinger, N. Cecilia Martinez-Gomez
Journal of Biological Chemistry.2020; 295(24): 8272. CrossRef
Zebra2: advanced and easy-to-use web-server for bioinformatic analysis of subfamily-specific and conserved positions in diverse protein superfamilies
Dmitry Suplatov, Yana Sharapova, Elizaveta Geraseva, Vytas Švedas
Nucleic Acids Research.2020; 48(W1): W65. CrossRef
Biological Pincer Complexes
Jorge L. Nevarez, Aiko Turmo, Jian Hu, Robert P. Hausinger
ChemCatChem.2020; 12(17): 4242. CrossRef
Crystal structure of Cytochrome cL from the aquatic methylotrophic bacterium Methylophaga aminisulfidivorans MPT
Suparna Ghosh, Immanuel Dhanasingh, Jaewon Ryu, Si Wouk Kim, Sung Haeng Lee
Journal of Microbiology and Biotechnology.2020; 30(8): 1261. CrossRef
New metal cofactors and recent metallocofactor insights
Robert P Hausinger
Current Opinion in Structural Biology.2019; 59: 1. CrossRef
Lanthanides‐based catalysis in eukaryotes
Giovanna De Simone, Fabio Polticelli, Silvio Aime, Paolo Ascenzi
IUBMB Life.2018; 70(11): 1067. CrossRef

Functional analysis of Mpk1-mediated cell wall integrity signaling pathway in the thermotolerant methylotrophic yeast Hansenula polymorpha: Hyunah Kim , Eun Jung Thak , Ji Yoon Yeon , Min Jeong Sohn , Jin Ho Choo , Jeong-Yoon Kim , Hyun Ah Kang; J. Microbiol. 2018;56(1):72-82. Published online January 4, 2018; DOI: https://doi.org/10.1007/s12275-018-7508-6

315 View
0 Download
8 Crossref

Abstract PDF

Understanding the characteristics and regulation mechanisms of cell wall integrity (CWI) in yeast is important not only for basic research but also in biotechnological applications. We found significantly different CWIs in two representative strains of the thermotolerant methylotrophic yeast Hansenula polymorpha. Compared to the A16 strain (classified as Ogataea polymorpha), the DL1-L strain (classified as Ogataea parapolymorpha) has a thinner cell wall that was found to be more fragile following long-term cultivation and more sensitive to zymolyase. To gain a deeper insight into this difference, we compared the characteristics of the Mpk1pmediated CWI signaling pathway in the two strains. While a DL1-L mutant deficient in Mpk1p (mpk1Δ) showed severe growth retardation at both normal and high growth temperatures and in the presence of cell-wall disrupting agents, the A16 mpk1Δ mutant displayed only a mild defect in cell growth. Sorbitol effect on rescuing growth retardation was different in the two mpk1Δ strains, which could partly be ascribed to subtle differences in the activation of HOG pathway. Among the cell wall disruptors evaluated, only caffeine clearly increased phosphorylation of Mpk1p in DL1-L, but not in A16. A transcriptome analysis of the DL1-L strain revealed that caffeine significantly increased the expression of a subset of cell-wall related genes in an Mpk1p-dependent manner, but not the expected Rlm1-target genes. Taken together, our data support an essential role for Mpk1p in maintaining CWI in H. polymorpha, although the requirement for Mpk1p and its regulation under diverse stress conditions varies depending on the strain background.

Citations

Citations to this article as recorded by

Optimization, characterization, comparison of self-assembly VLP of capsid protein L1 in yeast and reverse vaccinology design against human papillomavirus type 52
Moh Egy Rahman Firdaus, Apon Zaenal Mustopa, Nurlaili Ekawati, Sheila Chairunnisa, Rosyida Khusniatul Arifah, Ai Hertati, Shasmita Irawan, Anika Prastyowati, Arizah Kusumawati, Maritsa Nurfatwa
Journal of Genetic Engineering and Biotechnology.2023; 21(1): 68. CrossRef
Characterization, expression patterns and functional analysis of PcMPK12 gene in Phytophthora capsici
Tong-tong Zhu, Sheng-han Xiang, Lei Yang, Fang Tang, Wei Li, Ying-bao Liu, Wen-xiu Sun
European Journal of Plant Pathology.2022; 164(4): 525. CrossRef
The cell wall and the response and tolerance to stresses of biotechnological relevance in yeasts
Ricardo A. Ribeiro, Nuno Bourbon-Melo, Isabel Sá-Correia
Frontiers in Microbiology.2022;[Epub] CrossRef
The damage and tolerance mechanisms of Phaffia rhodozyma mutant strain MK19 grown at 28 °C
Li-Li Miao, Shuang Chi, Ting-Ting Hou, Zhi-Pei Liu, Ying Li
Microbial Cell Factories.2021;[Epub] CrossRef
Molecular characterization of Hsf1 as a master regulator of heat shock response in the thermotolerant methylotrophic yeast Ogataea parapolymorpha
Jin Ho Choo, Su-Bin Lee, Hye Yun Moon, Kun Hwa Lee, Su Jin Yoo, Keun Pil Kim, Hyun Ah Kang
Journal of Microbiology.2021; 59(2): 151. CrossRef
Pleiotropic Effects of Caffeine Leading to Chromosome Instability and Cytotoxicity in Eukaryotic Microorganisms
Woo-Hyun Chung
Journal of Microbiology and Biotechnology.2021; 31(2): 171. CrossRef
Short bZIP homologue of sulfur regulator Met4 from Ogataea parapolymorpha does not depend on DNA‐binding cofactors for activating genes in sulfur starvation
Su Jin Yoo, Min Jeong Sohn, Da Min Jeong, Hyun Ah Kang
Environmental Microbiology.2020; 22(1): 310. CrossRef
PlMAPK10, a Mitogen-Activated Protein Kinase (MAPK) in Peronophythora litchii, Is Required for Mycelial Growth, Sporulation, Laccase Activity, and Plant Infection
Liqun Jiang, Junjian Situ, Yi Zhen Deng, Lang Wan, Dandan Xu, Yubin Chen, Pinggen Xi, Zide Jiang
Frontiers in Microbiology.2018;[Epub] CrossRef

Magnetite production and transformation in the methanogenic consortia from coastal riverine sediments: Shiling Zheng , Bingchen Wang , Fanghua Liu , Oumei Wang; J. Microbiol. 2017;55(11):862-870. Published online October 27, 2017; DOI: https://doi.org/10.1007/s12275-017-7104-1

349 View
0 Download
14 Crossref

Abstract PDF

Minerals that contain ferric iron, such as amorphous Fe(III) oxides (A), can inhibit methanogenesis by competitively accepting electrons. In contrast, ferric iron reduced products, such as magnetite (M), can function as electrical conductors to stimulate methanogenesis, however, the processes and effects of magnetite production and transformation in the methanogenic consortia are not yet known. Here we compare the effects on methanogenesis of amorphous Fe (III) oxides (A) and magnetite (M) with ethanol as the electron donor. RNAbased terminal restriction fragment length polymorphism with a clone library was used to analyse both bacterial and archaeal communities. Iron (III)-reducing bacteria including Geobacteraceae and methanogens such as Methanosarcina were enriched in iron oxide-supplemented enrichment cultures for two generations with ethanol as the electron donor. The enrichment cultures with A and non-Fe (N) dominated by the active bacteria belong to Veillonellaceae, and archaea belong to Methanoregulaceae and Methanobacteriaceae, Methanosarcinaceae (Methanosarcina mazei), respectively. While the enrichment cultures with M, dominated by the archaea belong to Methanosarcinaceae (Methanosarcina barkeri). The
results
also showed that methanogenesis was accelerated in the transferred cultures with ethanol as the electron donor during magnetite production from A reduction. Powder X-ray diffraction analysis indicated that magnetite was generated from microbial reduction of A and M was transformed into siderite and vivianite with ethanol as the electron donor. Our data showed the processes and effects of magnetite production and transformation in the methanogenic consortia, suggesting that significantly different effects of iron minerals on microbial methanogenesis in the iron-rich coastal riverine environment were present.

Citations

Citations to this article as recorded by

Processing pathways of organic matter under methanogenic conditions and its influence on arsenic mobilization in aquifers
Xiaofang Yuan, Yamin Deng, Yao Du, Jiangkai Xue, Kunfu Pi, Yijun Yang, Yuxiao Xu, Xianjun Xie, Yanxin Wang
Journal of Hydrology.2025; 647: 132367. CrossRef
Beyond methanogenesis: Methanosarcina mazei in biotechnology and biomedical research
S. Saranya, S. Dhayanithi, L. Thamanna, L. Lourdu Lincy, M. Surulinathi, P. Chellapandi
Systems Microbiology and Biomanufacturing.2025;[Epub] CrossRef
Fermentative iron reduction buffers acidification and promotes microbial metabolism in marine sediments
Yuechao Zhang, Qinqin Hao, Oumei Wang, Xiao-Hua Zhang, Fanghua Liu
Journal of Environmental Chemical Engineering.2023; 11(5): 110922. CrossRef
Biogenic Fe Incorporation into Anaerobic Granular Sludge Assisted by Shewanella oneidensis MR-1 Enhanced Interspecies Electron Transfer and Methane Production
Meihui Zhuo, Xiangchun Quan, Zhiqi Gao, Ruoyu Yin, Yanping Quan
ACS Sustainable Chemistry & Engineering.2023; 11(7): 3001. CrossRef
Assessing the enhanced reduction effect with the addition of sulfate based P inactivating material during algal bloom sedimentation
Xin Liu, Xuan Sun, Rui Liu, Leilei Bai, Peixin Cui, Huacheng Xu, Changhui Wang
Chemosphere.2022; 300: 134656. CrossRef
Complete Genome Sequence of Methanobacterium electrotrophus Strain YSL, Isolated from Coastal Riverine Sediments
Shiling Zheng, Fanghua Liu, Frank J. Stewart
Microbiology Resource Announcements.2021;[Epub] CrossRef
The differences in the corrosion product compositions of Methanogen-induced microbiologically influenced corrosion (Mi-MIC) between static and dynamic growth conditions
Biwen Annie An, Eric Deland, Oded Sobol, Jizheng Yao, Torben Lund Skovhus, Andrea Koerdt
Corrosion Science.2021; 180: 109179. CrossRef
Organic matter stabilized Fe in drinking water treatment residue with implications for environmental remediation
Changhui Wang, Zhanling Wang, Huacheng Xu, Leilei Bai, Cheng Liu, Helong Jiang, Peixin Cui
Water Research.2021; 189: 116688. CrossRef
Methanobacterium Capable of Direct Interspecies Electron Transfer
Shiling Zheng, Fanghua Liu, Bingchen Wang, Yuechao Zhang, Derek R. Lovley
Environmental Science & Technology.2020; 54(23): 15347. CrossRef
Formation of Zerovalent Iron in Iron-Reducing Cultures of Methanosarcina barkeri
Haitao Shang, Mirna Daye, Orit Sivan, Caue S. Borlina, Nobumichi Tamura, Benjamin P. Weiss, Tanja Bosak
Environmental Science & Technology.2020; 54(12): 7354. CrossRef
Tackling antibiotic inhibition in anaerobic digestion: The roles of Fe3+ and Fe3O4 on process performance and volatile fatty acids utilization pattern
Fetra J. Andriamanohiarisoamanana, Ikko Ihara, Gen Yoshida, Kazutaka Umetsu
Bioresource Technology Reports.2020; 11: 100460. CrossRef
A potential contribution of a Fe(III)-rich red clay horizon to methane release: Biogenetic magnetite-mediated methanogenesis
Leilei Xiao, Wenchao Wei, Min Luo, Hengduo Xu, Dawei Feng, Jiafeng Yu, Jiafang Huang, Fanghua Liu
CATENA.2019; 181: 104081. CrossRef
Methanogenic Activity and Microbial Community Structure in Response to Different Mineralization Pathways of Ferrihydrite in Paddy Soil
Li Zhuang, Ziyang Tang, Zhen Yu, Jian Li, Jia Tang
Frontiers in Earth Science.2019;[Epub] CrossRef
A new insight into the strategy for methane production affected by conductive carbon cloth in wetland soil: Beneficial to acetoclastic methanogenesis instead of CO2 reduction
Jiajia Li, Leilei Xiao, Shiling Zheng, Yuechao Zhang, Min Luo, Chuan Tong, Hengduo Xu, Yang Tan, Juan Liu, Oumei Wang, Fanghua Liu
Science of The Total Environment.2018; 643: 1024. CrossRef

A novel methanotroph in the genus Methylomonas that contains a distinct clade of soluble methane monooxygenase: Ngoc-Loi Nguyen , Woon-Jong Yu , Hye-Young Yang , Jong-Geol Kim , Man-Young Jung , Soo-Je Park , Seong-Woon Roh , Sung-Keun Rhee; J. Microbiol. 2017;55(10):775-782. Published online September 28, 2017; DOI: https://doi.org/10.1007/s12275-017-7317-3

344 View
0 Download
15 Crossref

Abstract PDF

Aerobic methane oxidation is a key process in the global carbon cycle that acts as a major sink of methane. In this study, we describe a novel methanotroph designated EMGL16-1 that was isolated from a freshwater lake using the floating filter culture technique. Based on a phylogenetic analysis of 16S rRNA gene sequences, the isolate was found to be closely related to the genus Methylomonas in the family Methylococcaceae of the class Gammaproteobacteria with 94.2–97.4% 16S rRNA gene similarity to Methylomonas type strains. Comparison of chemotaxonomic and physiological properties further suggested that strain EMGL16-1 was taxonomically distinct from other species in the genus Methylomonas. The isolate was versatile in utilizing nitrogen sources such as molecular nitrogen, nitrate, nitrite, urea, and ammonium. The genes coding for subunit of the particulate form methane monooxygenase (pmoA), soluble methane monooxygenase (mmoX), and methanol dehydrogenase (mxaF) were detected in strain EMGL16-1. Phylogenetic analysis of mmoX indicated that mmoX of strain EMGL16-1 is distinct from those of other strains in the genus Methylomonas. This isolate probably represents a novel species in the genus. Our study provides new insights into the diversity of species in the genus Methylomonas and their environmental adaptations.

Citations

Citations to this article as recorded by

Diving into freshwater microbial metabolites: Pioneering research and future prospects
Saloni Sachdeva, Indira P Sarethy
International Journal of Environmental Health Research.2025; 35(2): 282. CrossRef
Recent findings in methanotrophs: genetics, molecular ecology, and biopotential
Fatemeh Ahmadi, Maximilian Lackner
Applied Microbiology and Biotechnology.2024;[Epub] CrossRef
Direct biological fixation provides a freshwater sink for N2O
Yueyue Si, Yizhu Zhu, Ian Sanders, Dorothee B. Kinkel, Kevin J. Purdy, Mark Trimmer
Nature Communications.2023;[Epub] CrossRef
Methylacidiphilum caldifontis gen. nov., sp. nov., a thermoacidophilic methane-oxidizing bacterium from an acidic geothermal environment, and descriptions of the family Methylacidiphilaceae fam. nov. and order Methylacidiphilales ord. nov.
Samuel Imisi Awala, Joo-Han Gwak, Yongman Kim, Chanmee Seo, Andrea Strazzulli, Song-Gun Kim, Sung-Keun Rhee
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
Methylococcus mesophilus sp. nov., the first non-thermotolerant methanotroph of the genus Methylococcus, from a rice field
Samuel Imisi Awala, Yongman Kim, Joo-Han Gwak, Chanmee Seo, Seungki Lee, Minseo Kang, Sung-Keun Rhee
International Journal of Systematic and Evolutionary Microbiology .2023;[Epub] CrossRef
Valorization of Small Alkanes by Biocatalytic Oxyfunctionalization
Durga Mahor, Zhiqi Cong, Martin J. Weissenborn, Frank Hollmann, Wuyuan Zhang
ChemSusChem.2022;[Epub] CrossRef
Assessment of diversity and composition of bacterial community in sludge treatment reed bed systems
Przemysław Kowal, Slawomir Ciesielski, Martyna Godzieba, Karolina Fitobór, Magdalena Gajewska, Katarzyna Kołecka
Science of The Total Environment.2021; 756: 144060. CrossRef
Novel methanotrophic and methanogenic bacterial communities from diverse ecosystems and their impact on environment
Manish Kumar, Ajar Nath Yadav, Raghvendra Saxena, Pankaj Kumar Rai, Diby Paul, Rajesh Singh Tomar
Biocatalysis and Agricultural Biotechnology.2021; 33: 102005. CrossRef
Methylococcus geothermalis sp. nov., a methanotroph isolated from a geothermal field in the Republic of Korea
Samuel Imisi Awala, Lorraine Araza Bellosillo, Joo-Han Gwak, Ngoc-Loi Nguyen, So-Jeong Kim, Byoung-Hee Lee, Sung-Keun Rhee
International Journal of Systematic and Evolutionary Microbiology.2020; 70(10): 5520. CrossRef
Complete Genome Sequence of Methylomonas koyamae LM6, a Potential Aerobic Methanotroph
Dae-Hee Lee, Lavanya Madhavaraj, Gui Hwan Han, Hyewon Lee, Seung-Goo Lee, Si Wouk Kim, J. Cameron Thrash
Microbiology Resource Announcements.2020;[Epub] CrossRef
Improved methane elimination by methane-oxidizing bacteria immobilized on modified oil shale semicoke
Meng-Ting Sun, Zhi-Man Yang, Xiao-Lei Fan, Fei Wang, Rong-Bo Guo, Dong-Yan Xu
Science of The Total Environment.2019; 655: 915. CrossRef
Acclimated methanotrophic consortia for aerobic co-metabolism of trichloroethene with methane
Chun-Chin Wang, Chen-Huei Li, Chu-Fang Yang
International Biodeterioration & Biodegradation.2019; 142: 52. CrossRef
Complete Genome Sequence of Methylomonas denitrificans Strain FJG1, an Obligate Aerobic Methanotroph That Can Couple Methane Oxidation with Denitrification
Fabini D. Orata, K. Dimitri Kits, Lisa Y. Stein
Genome Announcements.2018;[Epub] CrossRef
Mitigating Methane: Emerging Technologies To Combat Climate Change’s Second Leading Contributor
Chris Pratt, Kevin Tate
Environmental Science & Technology.2018; 52(11): 6084. CrossRef
Factors affecting the selection of PHB accumulating methanotrophs from waste activated sludge while utilizing ammonium as their nitrogen source
Ahmed Fergala, Ahmed AlSayed, Ahmed Eldyasti
Journal of Chemical Technology & Biotechnology.2018; 93(5): 1359. CrossRef

Review

Minireview] Microbial radiation-resistance mechanisms: Kwang-Woo Jung , Sangyong Lim , Yong-Sun Bahn; J. Microbiol. 2017;55(7):499-507. Published online June 30, 2017; DOI: https://doi.org/10.1007/s12275-017-7242-5

446 View
0 Download
47 Crossref

Abstract PDF

Organisms living in extreme environments have evolved a wide range of survival strategies by changing biochemical and physiological features depending on their biological niches. Interestingly, organisms exhibiting high radiation resistance have been discovered in the three domains of life (Bacteria, Archaea, and Eukarya), even though a naturally radiationintensive environment has not been found. To counteract the deleterious effects caused by radiation exposure, radiation- resistant organisms employ a series of defensive systems, such as changes in intracellular cation concentration, excellent DNA repair systems, and efficient enzymatic and non-enzymatic antioxidant systems. Here, we overview past and recent findings about radiation-resistance mechanisms in the three domains of life for potential usage of such radiationresistant microbes in the biotechnology industry.

Citations

Citations to this article as recorded by

Gamma radiation in highly compacted FEBEX bentonite: Key microbial and mineralogical behavior for safety assessment of nuclear repositories
Mar Morales-Hidalgo, Cristina Povedano-Priego, Marcos F. Martinez-Moreno, Kateřina Černá, Klára Lísková, Jakub Říha, Pedro Valdivieso, Ursula Alonso, Ana María Fernández, Fadwa Jroundi, Mohamed L. Merroun
Journal of Hazardous Materials.2025; 495: 138915. CrossRef
Strategy and mechanism for efficient removal of uranium from alkaline uranium-containing wastewater (AUW) using Halomonas campaniensis JX-12
Guangwen Feng, Huizhong Li
Process Safety and Environmental Protection.2025; 202: 107746. CrossRef
Application of the transposon-associated TnpB system of CRISPR-Cas in bacteria: Deinococcus
Zi-Qi Yang, Mei-Ju Li, Faizan Ahmad, Chun-Zhi Jin, Taihua Li, Feng-Jie Jin, Kee-Sun Shin, Long Jin
Frontiers in Microbiology.2025;[Epub] CrossRef
Knoellia altitudinis sp. nov., Knoellia pratensis sp. nov., Knoellia terrae sp. nov. and Knoellia tibetensis sp. nov., four novel UV radiation-resistant actinobacteria isolated from Tibet Autonomous Region, China
Jing Zhang, Tong Mou, Cong-Jian Li, Jing-Lin Bai, Li-Yan Yu, Hua-Hong Chen, Yu-Qin Zhang
International Journal of Systematic and Evolutionary Microbiology .2025;[Epub] CrossRef
Prospects and potential of electron beam and gamma irradiation in improving nutritional profile of plant-based ingredients used in aquafeed
Amit Ranjan, Pandi Kalaiselvan, Ambika Binesh, Kaliyamurthi Venkatachalam, Albin Jemila Thangarani, Nathan Felix
Journal of Food Composition and Analysis.2025; 148: 108200. CrossRef
Comparative Genomics and Phylogenomics of Novel Radiation-Resistant Bacterium Paracoccus qomolangmaensis sp. nov. S3-43T, Showing Pyrethroid Degradation
Yang Liu, Tuo Chen, Yiyang Zhang, Lu Zhang, Xiaowen Cui, Tian Cheng, Guangxiu Liu, Wei Zhang, Gaosen Zhang
Microorganisms.2025; 13(11): 2441. CrossRef
Unveiling connectivity and differences of bacterial response mechanisms exposed to multi-radiation through the transcriptomic profiles and physiological characteristics of Mount Everest Sphingomonas Radiodurans
Yang Liu, Lu Zhang, Jinxiu Wang, Pengcheng Zhang, Zhuxiang Zhang, Tuo Chen, Guangxiu Liu, Shichang Kang, Wei Zhang, Gaosen Zhang
Journal of Photochemistry and Photobiology B: Biology.2025; : 113304. CrossRef
The planetary protection strategy of Mars Sample Return’s Earth Return Orbiter mission
Giuseppe Cataldo, Lorenz Affentranger, Brian G. Clement, Daniel P. Glavin, David W. Hughes, John Hall, Bruno Sarli, Christine E. Szalai
Journal of Space Safety Engineering.2024; 11(2): 374. CrossRef
Insights into the Impact of Physicochemical and Microbiological Parameters on the Safety Performance of Deep Geological Repositories
Mar Morales-Hidalgo, Cristina Povedano-Priego, Marcos F. Martinez-Moreno, Miguel A. Ruiz-Fresneda, Margarita Lopez-Fernandez, Fadwa Jroundi, Mohamed L. Merroun
Microorganisms.2024; 12(5): 1025. CrossRef
Wireless Battery-free and Fully Implantable Organ Interfaces
Aman Bhatia, Jessica Hanna, Tucker Stuart, Kevin Albert Kasper, David Marshall Clausen, Philipp Gutruf
Chemical Reviews.2024; 124(5): 2205. CrossRef
Editorial: Rising stars in fungal pathogenesis: 2023
Brian L. Wickes, Adriana Marcela Celis Ramírez, Michal A. Olszewski, Yong-Sun Bahn
Frontiers in Cellular and Infection Microbiology.2024;[Epub] CrossRef
WP15 ConCorD state-of-the-art report (container corrosion under disposal conditions)
Andrés G. Muñoz, Abdesselam Abdelouas, Ursula Alonso, Ana María Fernández, Rizlan Bernier-Latmani, Andrea Cherkouk, Roberto Gaggiano, James Hesketh, Nick Smart, Cristiano Padovani, Kristel Mijnendonckx, Vanessa Montoya, Andrés Idiart, Arnau Pont, Olga Rib
Frontiers in Nuclear Engineering.2024;[Epub] CrossRef
Relationships between radiation, wildfire and the soil microbial communities in the Chornobyl Exclusion Zone
Alexandre Barretto de Menezes, Sergii Gashchak, Michael D. Wood, Nicholas A. Beresford
Science of The Total Environment.2024; 950: 175381. CrossRef
UV-B Halotolerant Bacteria from Marakkanam Saltpan and Biology of UV-B Tolerant Pontibacillus salipaludis Based on Whole Genome Sequencing
Amit Kumar
Geomicrobiology Journal.2024; 41(2): 183. CrossRef
Unraveling radiation resistance strategies in two bacterial strains from the high background radiation area of Chavara-Neendakara: A comprehensive whole genome analysis
Sowptika Pal, Ramani Yuvaraj, Hari Krishnan, Balasubramanian Venkatraman, Jayanthi Abraham, Anilkumar Gopinathan, Hari S. Misra
PLOS ONE.2024; 19(6): e0304810. CrossRef
Optimization Function for Determining Optimal Dose Range for Beef and Seed Potato Irradiation
Elena Kozlova, Ulyana Bliznyuk, Alexander Chernyaev, Polina Borshchegovskaya, Arcady Braun, Victoria Ipatova, Sergey Zolotov, Alexander Nikitchenko, Natalya Chulikova, Anna Malyuga, Yana Zubritskaya, Timofey Bolotnik, Anastasia Oprunenko, Aleksandr Kozlov
Foods.2024; 13(23): 3729. CrossRef
Impact of microbial processes on the safety of deep geological repositories for radioactive waste
Miguel A. Ruiz-Fresneda, Marcos F. Martinez-Moreno, Cristina Povedano-Priego, Mar Morales-Hidalgo, Fadwa Jroundi, Mohamed L. Merroun
Frontiers in Microbiology.2023;[Epub] CrossRef
Ionizing radiation effects on microorganisms and its applications in the food industry
Emmanuel Kormla Danyo, Maria Ivantsova, Irina Selezneva
Foods and Raw Materials.2023; 12(1): 1. CrossRef
Impact of radioactive contamination of soils on the diversity of micropopulation and the transformation of organic substances
I. Gudkov, I. Volkohon, V. Illienko, M. Lazarev, A. Klepko
Agricultural Science and Practice.2023; 9(3): 3. CrossRef
Aging of fuel-containing materials (fuel debris) in the Chornobyl (Chernobyl) Nuclear Power Plant and its implication for the decommissioning of the Fukushima Daiichi Nuclear Power Station
Toru Kitagaki, Viktor A. Krasnov, Atsushi Ikeda-Ohno
Journal of Nuclear Materials.2023; 576: 154224. CrossRef
Impact of ionizing radiation on the environmental microbiomes of Chornobyl wetlands
Elin Videvall, Pablo Burraco, Germán Orizaola
Environmental Pollution.2023; 330: 121774. CrossRef
Geography and environmental pressure are predictive of class‐specific radioresistance in black fungi
Lorenzo Aureli, Claudia Coleine, Manuel Delgado‐Baquerizo, Dag Ahren, Alessia Cemmi, Ilaria Di Sarcina, Silvano Onofri, Laura Selbmann
Environmental Microbiology.2023; 25(12): 2931. CrossRef
Wort disinfection treatment with electron beam for bioethanol production
Rubens Perez Calegari, Eric Alberto da Silva, Ana Paula Maria da Silva, Marcelo Pego Gomes, Layna Amorim Mota, Valter Arthur, Antonio Sampaio Baptista
Scientia Agricola.2023;[Epub] CrossRef
Redox status and metabolomic profiling of thioredoxin reductase inhibitors and 4 kGy ionizing radiation-exposed Deinococcus radiodurans
M. Sudharsan, N. Rajendra Prasad, G. Kanimozhi, B.S. Rishiikeshwer, G.R. Brindha, Anindita Chakraborty
Microbiological Research.2022; 261: 127070. CrossRef
Sphingomonas radiodurans sp. nov., a novel radiation-resistant bacterium isolated from the north slope of Mount Everest
Yang Liu, Tuo Chen, Xiaowen Cui, Yeteng Xu, Shixin Hu, Yidan Zhao, Wei Zhang, Guangxiu Liu, Gaosen Zhang
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
Sequence, structure, and function of the Dps DNA-binding protein from Deinococcus wulumuqiensis R12
Yao Chen, Zhihan Yang, Xue Zhou, Mengmeng Jin, Zijie Dai, Dengming Ming, Zhidong Zhang, Liying Zhu, Ling Jiang
Microbial Cell Factories.2022;[Epub] CrossRef
PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation
Yerli Marín‐Tovar, Hugo Serrano‐Posada, Adelaida Díaz‐Vilchis, Enrique Rudiño‐Piñera
Proteins: Structure, Function, and Bioinformatics.2022; 90(9): 1684. CrossRef
An insight into the mechanisms of homeostasis in extremophiles
Adithi Somayaji, Chetan Roger Dhanjal, Rathnamegha Lingamsetty, Ramesh Vinayagam, Raja Selvaraj, Thivaharan Varadavenkatesan, Muthusamy Govarthanan
Microbiological Research.2022; 263: 127115. CrossRef
Synthetic fungal melanin nanoparticles with excellent antioxidative property
Hengjie Zhang, Chuhao Huang, Jianhua Zhang, Chao Wang, Tianyou Wang, Shun Shi, Zhipeng Gu, Yiwen Li
Giant.2022; 12: 100120. CrossRef
Genomic Insights into the Radiation-Resistant Capability of Sphingomonas qomolangmaensis S5-59T and Sphingomonas glaciei S8-45T, Two Novel Bacteria from the North Slope of Mount Everest
Yang Liu, Xiaowen Cui, Ruiqi Yang, Yiyang Zhang, Yeteng Xu, Guangxiu Liu, Binglin Zhang, Jinxiu Wang, Xinyue Wang, Wei Zhang, Tuo Chen, Gaosen Zhang
Microorganisms.2022; 10(10): 2037. CrossRef
Response of soil microbial communities to natural radionuclides along specific-activity gradients
Guangwen Feng, Jinlong Yong, Qian Liu, Henglei Chen, Peihong Mao
Ecotoxicology and Environmental Safety.2022; 246: 114156. CrossRef
Questioning the radiation limits of life: Ignicoccus hospitalis between replication and VBNC
Dagmar Koschnitzki, Ralf Moeller, Stefan Leuko, Bartos Przybyla, Kristina Beblo-Vranesevic, Reinhard Wirth, Harald Huber, Reinhard Rachel, Petra Rettberg
Archives of Microbiology.2021; 203(4): 1299. CrossRef
Global Warming, Climate Change, and Environmental Pollution: Recipe for a Multifactorial Stress Combination Disaster
Sara I. Zandalinas, Felix B. Fritschi, Ron Mittler
Trends in Plant Science.2021; 26(6): 588. CrossRef
The Transcriptomic and Phenotypic Response of the Melanized Yeast Exophiala dermatitidis to Ionizing Particle Exposure
Zachary Schultzhaus, Amy Chen, Igor Shuryak, Zheng Wang
Frontiers in Microbiology.2021;[Epub] CrossRef
Genomic characterization and proteomic analysis of the halotolerant Micrococcus luteus SA211 in response to the presence of lithium
Fabiana Lilian Martínez, Verónica Beatriz Rajal, Verónica Patricia Irazusta
Science of The Total Environment.2021; 785: 147290. CrossRef
Helical and linear morphotypes ofArthrospirasp. PCC 8005 display genomic differences and respond differently to60Co gamma irradiation
Anu Yadav, Pieter Monsieurs, Agnieszka Misztak, Krzysztof Waleron, Natalie Leys, Ann Cuypers, Paul J. Janssen
European Journal of Phycology.2020; 55(2): 129. CrossRef
Gamma Radiation Tolerance and Protein Carbonylation Caused by Irradiation of Resting Cysts in the Free-living Ciliated Protist Colpoda cucullus
Ryota Saito, Ryota Koizumi, Tatsuya Sakai, Taiga Shimizu, Taiki Ono, Yoichiro Sogame
Acta Protozoologica.2020; 59(2): 67. CrossRef
Carotenoids as a Protection Mechanism against Oxidative Stress in Haloferax mediterranei
Micaela Giani, Rosa María Martínez-Espinosa
Antioxidants.2020; 9(11): 1060. CrossRef
Active Galactic Nuclei: Boon or Bane for Biota?
Manasvi Lingam, Idan Ginsburg, Shmuel Bialy
The Astrophysical Journal.2019; 877(1): 62. CrossRef
Computational search for UV radiation resistance strategies in Deinococcus swuensis isolated from Paramo ecosystems
Jorge Díaz-Riaño, Leonardo Posada, Iván Camilo Acosta, Carlos Ruíz-Pérez, Catalina García-Castillo, Alejandro Reyes, María Mercedes Zambrano, Hari S. Misra
PLOS ONE.2019; 14(12): e0221540. CrossRef
GATA-type transcription factors play a vital role in radiation sensitivity of Cryptococcus neoformans by regulating the gene expression of specific amino acid permeases
Wanchang Cui, XiangHong Li, Lisa Hull, Mang Xiao
Scientific Reports.2019;[Epub] CrossRef
Reducing the ionizing radiation background does not significantly affect the evolution of Escherichia coli populations over 500 generations
Nathanael Lampe, Pierre Marin, Marianne Coulon, Pierre Micheau, Lydia Maigne, David Sarramia, Fabrice Piquemal, Sébastien Incerti, David G. Biron, Camille Ghio, Télesphore Sime-Ngando, Thomas Hindre, Vincent Breton
Scientific Reports.2019;[Epub] CrossRef
Covalent Modification of Amino Acids and Peptides Induced by Ionizing Radiation from an Electron Beam Linear Accelerator Used in Radiotherapy
Benjamin B. Minkoff, Steven T. Bruckbauer, Grzegorz Sabat, Michael M. Cox, Michael R. Sussman
Radiation Research.2019; 191(5): 447. CrossRef
Genome analysis of Rubritalea profundi SAORIC-165T, the first deep-sea verrucomicrobial isolate, from the northwestern Pacific Ocean
Jaeho Song, Ilnam Kang, Yochan Joung, Susumu Yoshizawa, Ryo Kaneko, Kenshiro Oshima, Masahira Hattori, Koji Hamasaki, Kazuhiro Kogure, Soochan Kim, Kangseok Lee, Jang-Cheon Cho
Journal of Microbiology.2019; 57(5): 413. CrossRef
Shifts in microbial community composition in tannery-contaminated soil in response to increased gamma radiation
Mohammad A. A. Al-Najjar, Majed M. Albokari
Annals of Microbiology.2019; 69(13): 1567. CrossRef
Colloquium: Physical constraints for the evolution of life on exoplanets
Manasvi Lingam, Abraham Loeb
Reviews of Modern Physics.2019;[Epub] CrossRef
Enhanced biodegradation and kinetics of anthraquinone dye by laccase from an electron beam irradiated endophytic fungus
Kavitha Keshava Navada, Ganesh Sanjeev, Ananda Kulal
International Biodeterioration & Biodegradation.2018; 132: 241. CrossRef

Journal Article

Mucilaginibacter hankyongensis sp. nov., isolated from soil of ginseng field Baekdu Mountain: Qingmei Liu , Muhammad Zubair Siddiqi , Mi-Sun Kim , Sang Yong Kim , Wan-Taek Im; J. Microbiol. 2017;55(7):525-530. Published online June 30, 2017; DOI: https://doi.org/10.1007/s12275-017-7180-2

299 View
0 Download
6 Crossref

Abstract PDF

A Gram-negative, non-motile, aerobic, and rod-shaped bacterial strain designated as BR5-28T was isolated from the soil of a ginseng field at Baekdu Mountain Korea, and its taxonomic position was investigated using a polyphasic approach. Strain BR5-28T grew at 10–42°C (optimum temperature, 30°C) and pH 5.5–8.5 (optimum pH, 7.0) on R2A agar medium without additional NaCl supplementation. Strain BR5- 28T exhibited β-glucosidase activity, which was responsible for its ability to transform the ginsenosides Rb1 and Rd (the two dominant active components of ginseng) to compound-K. Based on 16S rRNA gene phylogeny, the novel strain showed a new branch within the genus Mucilaginibacter of the family Sphingobacteriaceae, and formed clusters with Mucilaginibacter frigoritolerans FT22T (95.8%) and Mucilaginibacter gotjawali SA3-7T (95.7%). The G+C content of the genomic DNA was 45.1%. The predominant respiratory quinone was MK-7 and the major fatty acids were summed feature 3 (comprising C16:1 ω6c and/or C16:1 ω7c), iso-C15:0 and anteiso-C15:0. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. Strain BR5- 28T was differentiated genotypically and phenotypically from the recognized species of the genus Mucilaginibacter. The isolate therefore represents a novel species, for which the name Mucilaginibacter hankyongensis sp. nov. is proposed, with the type strain BR5-28T (=KCTC 22274T =DSM 21151T).

Citations

Citations to this article as recorded by

Identification of Mucilaginibacter conchicola sp. nov., Mucilaginibacter achroorhodeus sp. nov. and Mucilaginibacter pallidiroseus sp. nov. and emended description of the genus Mucilaginibacter
Jiyoun Kim, Byungjo Lee, Geeta Chhetri, Inhyup Kim, Yoonseop So, Wonhee Jang, Taegun Seo
International Journal of Systematic and Evolutionary Microbiology .2022;[Epub] CrossRef
Biologically facilitated precipitation of metals in low-Fe waters at the sulphidic Mount Chalmers mine, Queensland, Australia
Anicia Henne, Dave Craw, Emma Gagen, Gordon Southam
Ore Geology Reviews.2021; 136: 104238. CrossRef
Mucilaginibacter hurinus sp. nov., isolated from briquette warehouse soil
Lina Choi, Xinran Zhao, Yali Song, Minghan Wu, Gejiao Wang, Mingshun Li
Archives of Microbiology.2020; 202(1): 127. CrossRef
Mucilaginibacter panaciglaebae sp. nov., isolated from soil of a ginseng field
Soon Youl Lee, Muhammad Zubair Siddiqi, Sang Yong Kim, Hong Shan Yu, Jae Hak Lee, Wan-Taek Im
International Journal of Systematic and Evolutionary Microbiology.2018; 68(1): 149. CrossRef
Terrabacter ginsengisoli sp. nov., isolated from ginseng cultivating soil
Mei-Fang Jin, Xiao-Tian Quan, Muhammad Zubair Siddiqi, Qing-Zhen Liu, Hong-Shan Yu, Wan-Taek Im
Journal of Microbiology.2018; 56(5): 331. CrossRef
Genomic Islands Confer Heavy Metal Resistance in Mucilaginibacter kameinonensis and Mucilaginibacter rubeus Isolated from a Gold/Copper Mine
Yuan Ping Li, Nicolas Carraro, Nan Yang, Bixiu Liu, Xian Xia, Renwei Feng, Quaiser Saquib, Hend A Al-Wathnani, Jan Roelof Van der Meer, Christopher Rensing
Genes.2018; 9(12): 573. CrossRef

Review

REVIEW] Hemorrhagic fever of bunyavirus etiology: disease models and progress towards new therapies: Brian B. Gowen , Brady T. Hickerson; J. Microbiol. 2017;55(3):183-195. Published online February 28, 2017; DOI: https://doi.org/10.1007/s12275-017-7029-8

322 View
0 Download
14 Crossref

Abstract PDF

A growing number of bunyaviruses are known to cause viral hemorrhagic fever (VHF), a severe febrile illness which can progress to hypovolemic shock and multi-organ failure and is characterized by hematologic abnormalities and vascular leak. At present, there are no approved vaccines or antiviral therapies to effectively prevent or treat VHF caused by pathogenic bunyaviruses. Advances in the modeling of bunyaviral infections have facilitated efforts towards the development of novel post-exposure prophylactic and therapeutic countermeasures, several of which may some day be approved for human use. Here, we review recent progress in animal models of severe bunyaviral infections essential to this mission, as well as promising antivirals and biologicals that are at various stages of the development process.

Citations

Citations to this article as recorded by

Epidemiology, transmission dynamics, treatment strategies, and future perspectives on Oropouche virus
Beema T Yoosuf, Abhay M Gaidhane, Nasir Vadia, Soumya V Menon, Kattela Chennakesavulu, Rajashree Panigrahi, Ganesh Bushi, Anju Rani, Sanjit Sah, Muhammed Shabil, Khang Wen Goh, Diptismita Jena
Diagnostic Microbiology and Infectious Disease.2025; 113(1): 116882. CrossRef
Mysterious Oropouche virus: Transmission, symptoms, and control
Sejal Porwal, Rishabha Malviya, Sathvik Belagodu Sridhar, Javedh Shareef, Tarun Wadhwa
Infectious Medicine.2025; 4(2): 100177. CrossRef
Current insights into human pathogenic phenuiviruses and the host immune system
Chuan-Min Zhou, Ze-Zheng Jiang, Ning Liu, Xue-Jie Yu
Virulence.2024;[Epub] CrossRef
Digoxin is a potent inhibitor of Bunyamwera virus infection in cell culture
Beatriz Pacheco, Alberto Fernández-Oliva, Moisés García-Serradilla, Cristina Risco
Journal of General Virology .2023;[Epub] CrossRef
Design and evaluation of neutralizing and fusion inhibitory peptides to Crimean-Congo hemorrhagic fever virus
Megan C. Mears, Sergio E. Rodriguez, Katharina S. Schmitz, Angel Padilla, Sudipta Biswas, Maria N.B. Cajimat, Chad E. Mire, Stephen R. Welch, Éric Bergeron, Christopher A. Alabi, Matteo Porotto, Dennis A. Bente
Antiviral Research.2022; 207: 105401. CrossRef
Baseline mapping of Oropouche virology, epidemiology, therapeutics, and vaccine research and development
Megan A. Files, Clairissa A. Hansen, Vanessa C. Herrera, Craig Schindewolf, Alan D. T. Barrett, David W. C. Beasley, Nigel Bourne, Gregg N. Milligan
npj Vaccines.2022;[Epub] CrossRef
Chloroquine, an Anti-Malaria Drug as Effective Prevention for Hantavirus Infections
Valentijn Vergote, Lies Laenen, Raf Mols, Patrick Augustijns, Marc Van Ranst, Piet Maes
Frontiers in Cellular and Infection Microbiology.2021;[Epub] CrossRef
Light and electron microscopy imaging unveils new aspects of the antiviral capacity of silver nanoparticles in bunyavirus-infected cells
Moisés García-Serradilla, Cristina Risco
Virus Research.2021; 302: 198444. CrossRef
Antiviral Drugs Against Severe Fever With Thrombocytopenia Syndrome Virus Infection
Mutsuyo Takayama-Ito, Masayuki Saijo
Frontiers in Microbiology.2020;[Epub] CrossRef
Multimeric single-domain antibody complexes protect against bunyavirus infections
Paul J Wichgers Schreur, Sandra van de Water, Michiel Harmsen, Erick Bermúdez-Méndez, Dubravka Drabek, Frank Grosveld, Kerstin Wernike, Martin Beer, Andrea Aebischer, Olalekan Daramola, Sara Rodriguez Conde, Karen Brennan, Dorota Kozub, Maiken Søndergaard
eLife.2020;[Epub] CrossRef
Crimean-Congo hemorrhagic fever virus strains Hoti and Afghanistan cause viremia and mild clinical disease in cynomolgus monkeys
Robert W. Cross, Abhishek N. Prasad, Viktoriya Borisevich, Joan B. Geisbert, Krystle N. Agans, Daniel J. Deer, Karla A. Fenton, Thomas W. Geisbert, Waleed Saleh Al-Salem
PLOS Neglected Tropical Diseases.2020; 14(8): e0008637. CrossRef
High Prevalence of a Newly Discovered Wutai Mosquito Phasivirus in Mosquitoes from Rio de Janeiro, Brazil
Mário Sérgio Ribeiro, Tania Ayllón, Viviana Malirat, Daniel Cardoso Portela Câmara, Cristina Maria Giordano Dias, Guilherme Louzada, Davis Fernandes-Ferreira, Roberto de Andrade Medronho, Renata Campos Acevedo
Insects.2019; 10(5): 135. CrossRef
Parallel Survey of Two Widespread Renal Syndrome-Causing Zoonoses:Leptospiraspp. andHantavirusin Urban Environment, Hungary
Kornélia Kurucz, Mónika Madai, Dominika Bali, Dávid Hederics, Győző Horváth, Gábor Kemenesi, Ferenc Jakab
Vector-Borne and Zoonotic Diseases.2018; 18(4): 200. CrossRef
A lethal disease model for New World hantaviruses using immunosuppressed Syrian hamsters
Valentijn Vergote, Lies Laenen, Bert Vanmechelen, Marc Van Ranst, Erik Verbeken, Jay W. Hooper, Piet Maes, Michael R. Holbrook
PLOS Neglected Tropical Diseases.2017; 11(10): e0006042. CrossRef

Journal Articles

Metagenomic analysis reveals the contribution of anaerobic methanotroph-1b in the oxidation of methane at the Ulleung Basin, East Sea of Korea: Jin-Woo Lee , Kae Kyoung Kwon , Jang-Jun Bahk , Dong-Hun Lee , Hyun Sook Lee , Sung Gyun Kang , Jung-Hyun Lee; J. Microbiol. 2016;54(12):814-822. Published online November 26, 2016; DOI: https://doi.org/10.1007/s12275-016-6379-y

288 View
0 Download
4 Crossref

Abstract PDF

We have previously identified a sulfate methane transition zone (SMTZ) within the methane hydrate-bearing sediment in the Ulleung Basin, East Sea of Korea, and the presence of ANME-1b group in the sediment has been shown by phylogenetic analysis of a 16S rRNA gene. Herein, we describe taxonomic and functional profiling in the SMTZ sample by metagenomic analysis, comparing with that of surface sediment. Metagenomic sequences of 115 Mbp and 252 Mbp were obtained from SMTZ and surface sediments, respectively. The taxonomic profiling using BLASTX against the SEED within MG-RAST showed the prevalence of methanogens (19.1%), such as Methanosarcinales (12.0%) and Methanomicrobiales (4.1%) predominated within the SMTZ metagenome. A number of 185,200 SMTZ reads (38.9%) and 438,484 surface reads (62.5%) were assigned to functional categories, and methanogenesis-related reads were statistically significantly overrepresented in the SMTZ metagenome. However, the mapping analysis of metagenome reads to the reference genomes, most of the sequences of the SMTZ metagenome were mapped to ANME-1 draft genomes, rather than those of methanogens. Furthermore, the two copies of the methyl-coenzyme M reductase gene (mcrA) segments of the SMTZ metagenome were clustered with ANME-1b in the phylogenetic cluster. These results indicate that ANME- 1b reads were miss-annotated to methanogens due to limitation of database. Many of key genes necessary for reverse methanogenesis were present in the SMTZ metagenome, except for N5,N10-methenyl-H4MPT reductase (mer) and CoBCoM heterodisulfide reductase subunits D and E (hdrDE). These data suggest that the ANME-1b represents the primary player the anaerobic methane oxidation in the SMTZ, of the methane hydrate-bearing sediment at the Ulleung Basin, East Sea of Korea.

Citations

Citations to this article as recorded by

Methane seepage intensity distinguish microbial communities in sediments at the Mid-Okinawa Trough
Youzhi Xin, Nengyou Wu, Zhilei Sun, Hongmei Wang, Ye Chen, Cuiling Xu, Wei Geng, Hong Cao, Xilin Zhang, Bin Zhai, Dawei Yan
Science of The Total Environment.2022; 851: 158213. CrossRef
Anthropogenic and Environmental Constraints on the Microbial Methane Cycle in Coastal Sediments
Anna J. Wallenius, Paula Dalcin Martins, Caroline P. Slomp, Mike S. M. Jetten
Frontiers in Microbiology.2021;[Epub] CrossRef
Roles of Organohalide-Respiring Dehalococcoidia in Carbon Cycling
Yi Yang, Robert Sanford, Jun Yan, Gao Chen, Natalie L. Cápiro, Xiuying Li, Frank E. Löffler, Nick Bouskill
mSystems.2020;[Epub] CrossRef
Community structure and distribution of benthic Bacteria and Archaea in a stratified coastal lagoon in the Southern Gulf of Mexico
Santiago Cadena, M. Leopoldina Aguirre-Macedo, Daniel Cerqueda-García, Francisco J. Cervantes, Jorge A. Herrera-Silveira, José Q. García-Maldonado
Estuarine, Coastal and Shelf Science.2019; 230: 106433. CrossRef

Molecular epidemiology of norovirus in asymptomatic food handlers in Busan, Korea, and emergence of genotype GII.17: Hee Soo Koo , Mi Ok Lee , Pyeong Tae Ku , Su Jeong Hwang , Dong Ju Park , Hyung Suk Baik; J. Microbiol. 2016;54(10):686-694. Published online September 30, 2016; DOI: https://doi.org/10.1007/s12275-016-6312-4

312 View
0 Download
9 Crossref

Abstract PDF

The molecular epidemiology of norovirus infections was studied in food handlers without any symptoms from January to December 2015 in Busan city, Korea. A total of 2,174 fecal specimens from asymptomatic food handlers were analyzed, and 2.3% (49/2,174) were norovirus-positive. Fourteen of 335 samples (4.2%) were positive in January; fifteen of 299 samples (5.0%) in February, and seven of 189 samples (3.7%) in December. However, norovirus was rarely detected in other months. From sequencing analysis, 11 genotypes (five GI and six GII genotypes) were detected. Among the 42 capid gene sequences identified, 14 were from the GI genogroup, while 28 were from the GII genogroup. The most commonly detected genotype was GII.17, comprising 15 (35.7%) of positive samples. From January 2012 to December 2015, 5,138 samples were collected from gastroenteritis patients and outbreaks in Busan. The most detected genotype in 2012, 2013, and 2014 was GII.4 (121, 24, and 12 cases, respectively), but in 2015, GII.17 (25 cases) was the most common. The GII.4 genotype was the major cause of acute gastroenteritis from 2012 to 2014, but the GII.17 genotype became the most prevalent cause in 2015. Continued epidemiological surveillance of GII.17 is needed, together with assessment of the risk of norovirus infection.

Citations

Citations to this article as recorded by

Global prevalence of norovirus gastroenteritis after emergence of the GII.4 Sydney 2012 variant: a systematic review and meta-analysis
Pan Zhang, Cai Hao, Xie Di, Xue Chuizhao, Li Jinsong, Zheng Guisen, Liu Hui, Duan Zhaojun
Frontiers in Public Health.2024;[Epub] CrossRef
Norovirus antivirals: Where are we now?
Natalie E. Netzler, Daniel Enosi Tuipulotu, Peter A. White
Medicinal Research Reviews.2019; 39(3): 860. CrossRef
Antiviral activity of Schizonepeta tenuifolia Briquet against noroviruses via induction of antiviral interferons
Yee Ching Ng, Ye Won Kim, Jeong-Su Lee, Sung Joon Lee, Moon Jung Song
Journal of Microbiology.2018; 56(9): 683. CrossRef
Emerging recombinant noroviruses identified by clinical and waste water screening
Jennifer H. Lun, Joanne Hewitt, Alefiya Sitabkhan, John-Sebastian Eden, Daniel Enosi Tuipulotu, Natalie E. Netzler, Leigh Morrell, Juan Merif, Richard Jones, Bixing Huang, David Warrilow, Kelly-Anne Ressler, Mark J. Ferson, Dominic E. Dwyer, Jen Kok, Will
Emerging Microbes & Infections.2018; 7(1): 1. CrossRef
Epidemiological characteristics of asymptomatic Norovirus infection in a population from oyster (Ostrea rivularis Gould) farms in southern China
Anna Wang, Qiong Huang, Lin Qin, Xianwu Zhong, Hui Li, Rongfeng Chen, Zhuang Wan, Hong Lin, Junhua Liang, Jiansen Li, Yali Zhuang, Yonghui Zhang
Epidemiology and Infection.2018; 146(15): 1955. CrossRef
Ice-associated norovirus outbreak predominantly caused by GII.17 in Taiwan, 2015
Hao-Yuan Cheng, Min-Nan Hung, Wan-Chin Chen, Yi-Chun Lo, Ying-Shih Su, Hsin-Yi Wei, Meng-Yu Chen, Yen-Chang Tuan, Hui-Chen Lin, Hsu-Yang Lin, Tsung-Yen Liu, Yu-Ying Wang, Fang-Tzy Wu
BMC Public Health.2017;[Epub] CrossRef
Current Status of Norovirus Food Poisoning Related to Bivalve Mollusk and Its Control Measures
Mamoru NODA
Food Hygiene and Safety Science (Shokuhin Eiseigaku Zasshi).2017; 58(1): 12. CrossRef
Occurrence of norovirus infection in an asymptomatic population in Indonesia
Takako Utsumi, Maria Inge Lusida, Zayyin Dinana, Rury Mega Wahyuni, Laura Navika Yamani, Juniastuti, Soetjipto, Chieko Matsui, Lin Deng, Takayuki Abe, Yen Hai Doan, Yoshiki Fujii, Hirokazu Kimura, Kazuhiko Katayama, Ikuo Shoji
Infection, Genetics and Evolution.2017; 55: 1. CrossRef
Foodborne Infectious Diseases Mediated by Inappropriate Infection Control in Food Service Businesses and Relevant Countermeasures in Korea
Jong Myong Park, Young-Hyun You, Hyun-Min Cho, Ji Won Hong, Sa-Youl Ghim
Osong Public Health and Research Perspectives.2017; 8(3): 159. CrossRef

Research Support, Non-U.S. Gov't

Photosynthetic inhibition and oxidative stress to the toxic Phaeocystis globosa caused by a diketopiperazine isolated from products of algicidal bacterium metabolism: Shuo Tan , Xiaoli Hu , Pinghe Yin , Ling Zhao; J. Microbiol. 2016;54(5):364-375. Published online April 20, 2016; DOI: https://doi.org/10.1007/s12275-016-6012-0

363 View
0 Download
46 Crossref

Abstract PDF

Algicidal bacteria have been turned out to be available for inhibiting Phaeocystis globosa which frequently caused harmful algal blooms and threatened to economic development and ecological balance. A marine bacterium Bacillus sp. Ts-12 exhibited significant algicidal activity against P. globosa by indirect attack. In present study, an algicidal compound was isolated by silica gel column, Sephadex G-15 column and HPLC, further identified as hexahydropyrrolo[1,2-a]pyrazine- 1,4-dione, cyclo-(Pro-Gly), by GC-MS and 1H-NMR. Cyclo-(Pro-Gly) significantly increased the level of reactive oxygen species (ROS) within P. globosa cells, further activating the enzymatic and non-enzymatic antioxidant systems, including superoxide dismutase (SOD), catalase (CAT), glutathione (GSH) and ascorbic acid (AsA). The increase in methane dicarboxylic aldehyde (MDA) content showed that the surplus ROS induced lipid peroxidation on membrane system. Transmission electron microscope (TEM) and flow cytometry (FCM) analysis revealed that cyclo-(Pro-Gly) caused reduction of Chl-a content, destruction of cell membrane integrity, chloroplasts and nuclear structure. Real-time PCR assay showed that the transcriptions of photosynthesis related genes (psbA, psbD, rbcL) were significantly inhibited. This study indicated that cyclo-(Pro-Gly) from marine Bacillus sp. Ts-12 exerted photosynthetic inhibition and oxidative stress to P. globosa and eventually led to the algal cells lysis. This algicidal compound might be potential bio-agent for controlling P. globosa red tide.

Citations

Citations to this article as recorded by

Flagellimonas algicida sp. Nov.: A Novel Broad-Spectrum Algicidal Bacterium Targeting Harmful Algal Bloom Species and Genomic Insights into Its Secondary Metabolites
Ning Wang, Yiling Liang, Hui Zhou, Yutian Chi, Lizhu Chen, Qiliang Lai, Hong Xu
Microorganisms.2025; 13(9): 2062. CrossRef
Toxic effects of eight azole fungicides on the growth, photosynthetic activity, and oxidative stress of Raphidocelis subcapitata
Yongxiang Huang, Dijie Guo, Litang Qin, Lingyun Mo, Yuqing Zhao
Environmental Toxicology and Chemistry.2025; 44(5): 1259. CrossRef
Transcriptome analysis of Ipomoea cairica algicidal mechanism against Phaeocystis globosa
Dayong Liang, Huanxin Li, Yuxuan Pan, Zihan Liu, Hua Xiang
Frontiers in Marine Science.2025;[Epub] CrossRef
Warfare under the waves: a review of bacteria-derived algaecidal natural products
Shuxin Yang, Spencer J. Williams, Myles Courtney, Laura Burchill
Natural Product Reports.2025; 42(4): 681. CrossRef
Salinity-dependent top-down effect of rotifer Brachionus plicatilis on removing harmful alga Phaeocystis globosa
Yunfei Sun, Xiaoru Qian, Hang Wu, Gongyuan Wang, Yannan Li, Qingqing Yu, Zhou Yang
Marine Pollution Bulletin.2024; 199: 116044. CrossRef
Natural algicidal compounds: Strategies for controlling harmful algae and application
Huili Li, Ronglian Xing, Xingyu Ji, Yi Liu, Xinran Chu, Jiaxin Gu, Shengnan Wang, Gexuan Wang, Shijun Zhao, Xuebin Cao
Plant Physiology and Biochemistry.2024; 215: 108981. CrossRef
Characterization of a novel algicidal bacteria Arenibacter sp. strain 6A1 and its application to eliminate harmful algal blooms
Sha Wu, Jing Tong, Jiahuan Chen, Minchun Chen, Liyan Wang, Shuangfei Li, Zhangli Hu, Huirong Chen
Frontiers in Marine Science.2024;[Epub] CrossRef
Proteomic insights of interaction between ichthyotoxic dinoflagellate Karenia mikimotoi and algicidal bacteria Maribacter dokdonensis
Thomas Chun-Hung Lee, Winnie Lam, Nora Fung-Yee Tam, Steven Jing-Liang Xu, Chak-Lam Lee, Fred Wang-Fat Lee
Marine Pollution Bulletin.2024; 209: 117227. CrossRef
Inhibitory effect and mechanism of algicidal bacteria on Chaetomorpha valida
Yaqi Geng, Ronglian Xing, Hongxia Zhang, Guoning Nan, Lihong Chen, Zhen Yu, Chuyao Liu, Huili Li
Science of The Total Environment.2024; 914: 169850. CrossRef
Investigating the molecular mechanisms of Pseudalteromonas sp. LD-B1's algicidal effects on the harmful alga Heterosigma akashiwo
Mingyang Xu, Yujiao Chen, Lei Chen, Yifan Chen, Xueyao Yin, Nanjing Ji, Yuefeng Cai, Song Sun, Xin Shen
Ecotoxicology and Environmental Safety.2024; 282: 116690. CrossRef
Influence of perfluoroalkyl substances, with focus on perfluorobutanoic acid on the responding characteristics and molecular mechanisms of Thalassiosira pseudonana
Jiayi Shi, Mengyang Hu, Zhilin Xia, Jirong Zhang, Ziniu Wang, Luying Li, Yan Zhao
Ecotoxicology and Environmental Safety.2024; 285: 117048. CrossRef
Effects of polystyrene microplastics on the extracellular and intracellular dissolved organic matter released by Skeletonema costatum using a novel in situ method
Xixue Chen, Yaxian Zhu, Yong Zhang
Environmental Pollution.2024; 359: 124604. CrossRef
Algicidal activity of a novel bacterium, Qipengyuania sp. 3-20A1M, against harmful Margalefidinium polykrikoides: Effects of its active compound
So-Ra Ko, Ve Van Le, Ankita Srivastava, Mingyeong Kang, Hee-Mock Oh, Chi-Yong Ahn
Marine Pollution Bulletin.2023; 186: 114397. CrossRef
Eutrophic water remediation efficiency of algicidal bacteria, Cellvibrio sp. G1 and Chitinimonas sp. G2, and their influence on microbial community structure
Tianyu Zhuo, Qiong Wan, Beibei Chai, Dajun Ren, Xiaohui Lei, Lixin He, Bin Chen
Algal Research.2023; 71: 103034. CrossRef
An insight into algicidal characteristics of Bacillus altitudinis G3 from dysfunctional photosystem and overproduction of reactive oxygen species
Xiping Hou, Yaoyao Yan, Yuqin Wang, Tao Jiang, Xiaohui Zhang, Xianzhu Dai, Yasuo Igarashi, Feng Luo, Caiyun Yang
Chemosphere.2023; 310: 136767. CrossRef
Functional role of a novel algicidal compound produced by Pseudoruegeria sp. M32A2M on the harmful algae Alexandrium catenella
So-Ra Ko, Yujin Jeong, Sang-Hyeok Cho, Eunju Lee, Bo-Seong Jeong, Seung Ho Baek, Byung-Ha Oh, Chi-Yong Ahn, Hee-Mock Oh, Byung-Kwan Cho, Suhyung Cho
Chemosphere.2022; 300: 134535. CrossRef
Algicidal Effects of a High-Efficiency Algicidal Bacterium Shewanella Y1 on the Toxic Bloom-Causing Dinoflagellate Alexandrium pacificum
Xi Chen, Dengyu Wang, Yanqun Wang, Pengfei Sun, Shuanghui Ma, Tiantian Chen
Marine Drugs.2022; 20(4): 239. CrossRef
Bacteria Associated With Phaeocystis globosa and Their Influence on Colony Formation
Shuaishuai Xu, Xiaodong Wang, Jie Liu, Fengli Zhou, Kangli Guo, Songze Chen, Zhao-hui Wang, Yan Wang
Frontiers in Microbiology.2022;[Epub] CrossRef
The ecological responses of bacterioplankton during a Phaeocystis globosa bloom in Beibu Gulf, China highlighted by integrated metagenomics and metatranscriptomics
Sha Xu, Cheng He, Zhenjun Kang, Shuqun Song, Caiwen Li
Marine Biology.2022;[Epub] CrossRef
A Novel Algicidal Bacterium, Microbulbifer sp. YX04, Triggered Oxidative Damage and Autophagic Cell Death in Phaeocystis globosa , Which Causes Harmful Algal Blooms
Xiaoying Zhu, Shuangshuang Chen, Guiying Luo, Wei Zheng, Yun Tian, Xueqian Lei, Luming Yao, Caiming Wu, Hong Xu, Vincent J. Denef
Microbiology Spectrum.2022;[Epub] CrossRef
Toxicity of triphenyl phosphate toward the marine rotifer Brachionus plicatilis: Changes in key life-history traits, rotifer-algae population dynamics and the metabolomic response
Zijie Sun, Wenqian Ma, Xuexi Tang, Xin Zhang, Yingying Yang, Xinxin Zhang
Ecotoxicology and Environmental Safety.2022; 241: 113731. CrossRef
Applying Surfactin in the Removal of Blooms of Karlodinium veneficum Increases the Toxic Potential
Xiaoyu Tian, Ran Meng, Chengxu Zhou, Yuanbo Pan, Xiaojun Yan
Journal of Marine Science and Engineering.2022; 10(2): 196. CrossRef
Methods to control harmful algal blooms: a review
Barathan Balaji-Prasath, Ying Wang, Yu Ping Su, David P. Hamilton, Hong Lin, Luwei Zheng, Yong Zhang
Environmental Chemistry Letters.2022; 20(5): 3133. CrossRef
Removal of harmful algae by Shigella sp. H3 and Alcaligenes sp. H5: algicidal pathways and characteristics
Gang Xue, Xiaonuan Wang, Chenlan Xu, Binxue Song, Hong Chen
Environmental Technology.2022; 43(27): 4341. CrossRef
Algicidal Bacteria: A Review of Current Knowledge and Applications to Control Harmful Algal Blooms
Kathryn J. Coyne, Yanfei Wang, Gretchen Johnson
Frontiers in Microbiology.2022;[Epub] CrossRef
Spatiotemporal dynamics of marine microbial communities following a Phaeocystis bloom: biogeography and co‐occurrence patterns
Sha Xu, Cheng He, Shuqun Song, Caiwen Li
Environmental Microbiology Reports.2021; 13(3): 294. CrossRef
Toxicological effects of hypoxanthine on Heterosigmaakashiwo: Mechanism of growth inhibition and change in hemolytic toxin content
Binbin Chen, Ling Zhao, Qiming Jimmy Yu
Ecotoxicology and Environmental Safety.2021; 226: 112797. CrossRef
Altering the Sex Pheromone Cyclo(l-Pro-l-Pro) of the Diatom Seminavis robusta towards a Chemical Probe
Eli Bonneure, Amber De Baets, Sam De Decker, Koen Van den Berge, Lieven Clement, Wim Vyverman, Sven Mangelinckx
International Journal of Molecular Sciences.2021; 22(3): 1037. CrossRef
Effect of algicidal compound Nω-acetylhistamine on physiological response and algal toxins in Heterosigma akashiwo
Qiuyin Zhu, Biyu Wu, Ling Zhao
Ecotoxicology and Environmental Safety.2021; 208: 111423. CrossRef
The potential of prodigiosin for control of Prorocentrum donghaiense blooms: Algicidal properties and acute toxicity to other marine organisms at various trophic levels
Yingjie Chen, Guiying Luo, Shuangshuang Chen, Danyang Zhang, Wanxin Xie, Zengge Wang, Wei Zheng, Hong Xu
Ecotoxicology and Environmental Safety.2021; 228: 112913. CrossRef
The complete genome sequence of the algicidal bacterium Bacillus subtilis strain JA and the use of quorum sensing to evaluate its antialgal ability
Sheng-Jie Zhang, Xiao-Peng Du, Jian-Ming Zhu, Chen-Xu Meng, Jin Zhou, Ping Zuo
Biotechnology Reports.2020; 25: e00421. CrossRef
Allelopathic Inhibition by the Bacteria Bacillus cereus BE23 on Growth and Photosynthesis of the Macroalga Ulva prolifera
Naicheng Li, Jingyao Zhang, Xinyu Zhao, Pengbin Wang, Mengmeng Tong, Patricia M. Glibert
Journal of Marine Science and Engineering.2020; 8(9): 718. CrossRef
Continuous production of algicidal compounds against Akashiwo sanguinea via a Vibrio sp. co-culture
Yue Wang, Shuangfei Li, Guozhu Liu, Xiaoqiang Li, Qixia Yang, Ying Xu, Zhangli Hu, Chun-Yen Chen, Jo-Shu Chang
Bioresource Technology.2020; 295: 122246. CrossRef
The Antialgal Mechanism of Luteolin-7-O-Glucuronide on Phaeocystis globosa by Metabolomics Analysis
Jingyi Zhu, Yeyin Yang, Shunshan Duan, Dong Sun
International Journal of Environmental Research and Public Health.2019; 16(17): 3222. CrossRef
Effects of Lanthanum on the Photosystem II Energy Fluxes and Antioxidant System of Chlorella Vulgaris and Phaeodactylum Tricornutum
Dong Sun, Ning He, Qi Chen, Shunshan Duan
International Journal of Environmental Research and Public Health.2019; 16(12): 2242. CrossRef
Algicidal characterization and mechanism of Bacillus licheniformis Sp34 against Microcystis aeruginosa in Dianchi Lake
Jinyu Liu, Caiyun Yang, Yuxin Chi, Donghao Wu, Xianzhu Dai, Xiaohui Zhang, Yasuo Igarashi, Feng Luo
Journal of Basic Microbiology.2019; 59(11): 1112. CrossRef
Small-Sized Microplastics Negatively Affect Rotifers: Changes in the Key Life-History Traits and Rotifer–Phaeocystis Population Dynamics
Yunfei Sun, Wenjie Xu, Qiujin Gu, Yitong Chen, Qiming Zhou, Lu Zhang, Lei Gu, Yuan Huang, Kai Lyu, Zhou Yang
Environmental Science & Technology.2019; 53(15): 9241. CrossRef
Nutritional strategy for the preferential uptake of $${{text{NO}}_{3}}^{ - } {text{{-}N}}$$ by Phaeocystis globosa
Xuning Lv, Zaixing Wu, Xiuxian Song, Yongquan Yuan, Xihua Cao, Zhiming Yu
Hydrobiologia.2019; 846(1): 109. CrossRef
Growth Inhibition of Phaeocystis Globosa Induced by Luteolin-7-O-glucuronide from Seagrass Enhalus acoroides
Jingyi Zhu, Han Xiao, Qi Chen, Min Zhao, Dong Sun, Shunshan Duan
International Journal of Environmental Research and Public Health.2019; 16(14): 2615. CrossRef
Isolation of an algicidal bacterium and its effects against the harmful-algal- bloom dinoflagellate Prorocentrum donghaiense (Dinophyceae)
Xinguo Shi, Lemian Liu, Yue Li, Yuchun Xiao, Guangmao Ding, Senjie Lin, Jianfeng Chen
Harmful Algae.2018; 80: 72. CrossRef
Combined algicidal effect of urocanic acid,N-acetylhistamine andl-histidine to harmful algaPhaeocystis globosa
Luer Zhuang, Ling Zhao, Pinghe Yin
RSC Advances.2018; 8(23): 12760. CrossRef
Study on the metabolites of DH-e, a Halomonas marine bacterium, against three toxic dinoflagellate species
Di Wang, Liling Xie, Xingbiao Zhu, Xiao Bi, Yuzhong Zheng, Yankun Zhu
Water Science and Technology.2018; 78(7): 1535. CrossRef
Investigation of the Inhibitory Effects of Mangrove Leaves and Analysis of Their Active Components on Phaeocystis globosa during Different Stages of Leaf Age
Min Zhao, Han Xiao, Dong Sun, Shunshan Duan
International Journal of Environmental Research and Public Health.2018; 15(11): 2434. CrossRef
NprR-NprX Quorum-Sensing System Regulates the Algicidal Activity of Bacillus sp. Strain S51107 against Bloom-Forming Cyanobacterium Microcystis aeruginosa
Lishuang Wu, Xingliang Guo, Xianglong Liu, Hong Yang
Frontiers in Microbiology.2017;[Epub] CrossRef
Strategies and ecological roles of algicidal bacteria
Nils Meyer, Arite Bigalke, Anett Kaulfuß, Georg Pohnert
FEMS Microbiology Reviews.2017; 41(6): 880. CrossRef
Trade-off between reproduction and lifespan of the rotifer Brachionus plicatilis under different food conditions
Yunfei Sun, Xinying Hou, Xiaofeng Xue, Lu Zhang, Xuexia Zhu, Yuan Huang, Yafen Chen, Zhou Yang
Scientific Reports.2017;[Epub] CrossRef

Reviews

MINIREVIEW] Hydroxylation of methane through component interactions in soluble methane monooxygenases: Seung Jae Lee; J. Microbiol. 2016;54(4):277-282. Published online April 1, 2016; DOI: https://doi.org/10.1007/s12275-016-5642-6

350 View
0 Download
7 Crossref

Abstract PDF

Methane hydroxylation through methane monooxygenases (MMOs) is a key aspect due to their control of the carbon cycle in the ecology system and recent applications of methane gas in the field of bioenergy and bioremediation. Methanotropic bacteria perform a specific microbial conversion from methane, one of the most stable carbon compounds, to methanol through elaborate mechanisms. MMOs express particulate methane monooxygenase (pMMO) in most strains and soluble methane monooxygenase (sMMO) under copper-limited conditions. The mechanisms of MMO have been widely studied from sMMO belonging to the bacterial multicomponent monooxygenase (BMM) superfamily. This enzyme has diiron active sites where different types of hydrocarbons are oxidized through orchestrated hydroxylase, regulatory and reductase components for precise control of hydrocarbons, oxygen, protons, and electrons. Recent advances in biophysical studies, including structural and enzymatic achievements for sMMO, have explained component interactions, substrate pathways, and intermediates of sMMO. In this account, oxidation of methane in sMMO is discussed with recent progress that is critical for understanding the microbial applications of C-H activation in one-carbon substrates.

Citations

Citations to this article as recorded by

Complete genome sequences of Methylococcus capsulatus (Norfolk) and Methylocaldum szegediense (Norfolk) isolated from a landfill methane biofilter
David Pearce, Elliot Brooks, Charles Wright, Daniel Rankin, Andrew T. Crombie, J. Colin Murrell, Elinne Becket
Microbiology Resource Announcements.2024;[Epub] CrossRef
Effect of monodentate heterocycle co-ligands on the μ-1,2-peroxo-diiron(III) mediated aldehyde deformylation reactions
Patrik Török, Dóra Lakk-Bogáth, Duenpen Unjaroen, Wesley R. Browne, József Kaizer
Journal of Inorganic Biochemistry.2024; 258: 112620. CrossRef
Crucial Role of the Chaperonin GroES/EL for Heterologous Production of the Soluble Methane Monooxygenase from Methylomonas methanica MC09
Domenic Zill, Elisabeth Lettau, Christian Lorent, Franziska Seifert, Praveen K. Singh, Lars Lauterbach
ChemBioChem.2022;[Epub] CrossRef
Bioinspired Oxidation of Methane: From Academic Models of Methane Monooxygenases to Direct Conversion of Methane to Methanol
A. A. Shteinman
Kinetics and Catalysis.2020; 61(3): 339. CrossRef
Effect of the Nuclearity and Coordination of Cu and Fe Sites in β Zeolites on the Oxidation of Hydrocarbons
Petr Sazama, Jaroslava Moravkova, Stepan Sklenak, Alena Vondrova, Edyta Tabor, Galina Sadovska, Radim Pilar
ACS Catalysis.2020; 10(7): 3984. CrossRef
Enrichment culture and identification of endophytic methanotrophs isolated from peatland plants
Zofia Stępniewska, Weronika Goraj, Agnieszka Kuźniar, Natalia Łopacka, Magdalena Małysza
Folia Microbiologica.2017; 62(5): 381. CrossRef
A growing family of O2 activating dinuclear iron enzymes with key catalytic diiron(III)-peroxo intermediates: Biological systems and chemical models
Alexandre Trehoux, Jean-Pierre Mahy, Frédéric Avenier
Coordination Chemistry Reviews.2016; 322: 142. CrossRef

MINIREVIEW] Regulation of Escherichia coli RNase III activity: Boram Lim , Minji Sim , Howoon Lee , Seogang Hyun , Younghoon Lee , Yoonsoo Hahn , Eunkyoung Shin , Kangseok Lee; J. Microbiol. 2015;53(8):487-494. Published online July 31, 2015; DOI: https://doi.org/10.1007/s12275-015-5323-x

326 View
0 Download
12 Crossref

Abstract

Bacterial cells respond to changes in the environment by adjusting their physiological reactions. In cascades of cellular responses to stresses of various origins, rapid modulation of RNA function is known to be an effective biochemical adaptation. Among many factors affecting RNA function, RNase III, a member of the phylogenetically highly conserved endoribonuclease III family, plays a key role in posttranscriptional regulatory pathways in Escherichia coli. In this review, we provide an overview of the factors affecting RNase III activity in E. coli.

Citations

Citations to this article as recorded by

Comparative Transcriptomic Analysis of Flagellar-Associated Genes in Salmonella Typhimurium and Its rnc Mutant
Seungmok Han, Ji-Won Byun, Minho Lee
Journal of Microbiology.2024; 62(1): 33. CrossRef
arfAantisense RNA regulates MscL excretory activity
Rosa Morra, Fenryco Pratama, Thomas Butterfield, Geizecler Tomazetto, Kate Young, Ruth Lopez, Neil Dixon
Life Science Alliance.2023; 6(6): e202301954. CrossRef
Transcriptome and metabolome analyses of response of Synechocystis sp. PCC 6803 to methyl viologen
Xinyu Hu, Tianyuan Zhang, Kai Ji, Ke Luo, Li Wang, Wenli Chen
Applied Microbiology and Biotechnology.2021; 105(21-22): 8377. CrossRef
Endoribonuclease-mediated control of hns mRNA stability constitutes a key regulatory pathway for Salmonella Typhimurium pathogenicity island 1 expression
Minho Lee, Minkyung Ryu, Minju Joo, Young-Jin Seo, Jaejin Lee, Hong-Man Kim, Eunkyoung Shin, Ji-Hyun Yeom, Yong-Hak Kim, Jeehyeon Bae, Kangseok Lee, William Navarre
PLOS Pathogens.2021; 17(2): e1009263. CrossRef
Trans-acting regulators of ribonuclease activity
Jaejin Lee, Minho Lee, Kangseok Lee
Journal of Microbiology.2021; 59(4): 341. CrossRef
RNase III, Ribosome Biogenesis and Beyond
Maxence Lejars, Asaki Kobayashi, Eliane Hajnsdorf
Microorganisms.2021; 9(12): 2608. CrossRef
The rnc Gene Regulates the Microstructure of Exopolysaccharide in the Biofilm of Streptococcus mutans through the β-Monosaccharides
Yangyu Lu, Hongyu Zhang, Meng Li, Mengying Mao, Jiaqi Song, Yalan Deng, Lei Lei, Yingming Yang, Tao Hu
Caries Research.2021; 55(5): 534. CrossRef
Distributive enzyme binding controlled by local RNA context results in 3′ to 5′ directional processing of dicistronic tRNA precursors byEscherichia coliribonuclease P
Jing Zhao, Michael E Harris
Nucleic Acids Research.2019; 47(3): 1451. CrossRef
RNase G controls tpiA mRNA abundance in response to oxygen availability in Escherichia coli
Jaejin Lee, Dong-Ho Lee, Che Ok Jeon, Kangseok Lee
Journal of Microbiology.2019; 57(10): 910. CrossRef
The coordinated action of RNase III and RNase G controls enolase expression in response to oxygen availability in Escherichia coli
Minho Lee, Minju Joo, Minji Sim, Se-Hoon Sim, Hyun-Lee Kim, Jaejin Lee, Minkyung Ryu, Ji-Hyun Yeom, Yoonsoo Hahn, Nam-Chul Ha, Jang-Cheon Cho, Kangseok Lee
Scientific Reports.2019;[Epub] CrossRef
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes
Anaïs Le Rhun, Anne-Laure Lécrivain, Johan Reimegård, Estelle Proux-Wéra, Laura Broglia, Cristina Della Beffa, Emmanuelle Charpentier
Nucleic Acids Research.2017; : gkw1316. CrossRef
Regulation and functions of bacterial PNPase
Federica Briani, Thomas Carzaniga, Gianni Dehò
WIREs RNA.2016; 7(2): 241. CrossRef

Research Support, Non-U.S. Gov't

Phosphorylation of the nucleocapsid protein of Hantaan virus by casein kinase II: Jeong-Joong Yoon , Yun-Tai Lee , Hin Chu , Seung-yeol Son , Manbok Kim; J. Microbiol. 2015;53(5):343-347. Published online May 3, 2015; DOI: https://doi.org/10.1007/s12275-015-5095-3

282 View
0 Download
2 Crossref

Abstract

Hantaanvirus (HTNV) is the prototype of the genus Hantavirus, which belongs to the family Bunyaviridae. Hantaviruses are carried and transmitted by rodents and are known to cause two serious disease syndromes in humans i.e., hemorrhagic fever with renal syndrome (HFRS) and the hantavirus pulmonary syndrome (HPS). HTNV is an enveloped virus that contains a tripartite genome consisting of three negative-sense RNA segments (L, M, S), and the S and M segment of HTNV, respectively, encode the viral nucleocapsid protein (NP) and envelope glycoproteins. Possible phosphorylation motifs of casein kinase II (CKII) and protein kinase C (PKC) were identified in HTNV NP through bioinformatics searches. Sucrose gradient SDS-PAGE analysis indicated that dephosphorylated HTNV NP migrated faster than non-dephosphorylated NP, suggesting that HTNV NP is phosphorylated in infected Vero E6 cells. Immunoblot anaylsis of HTNV particles with anti-phosphoserine antibody and anti-phosphothreonine antibody after immunoprecipitation showed that viral particles are readily phosphorylated at threonine residues. In vitro kinase assay further showed that HTNV NP is phosphorylated by CK II, but not by PKC. Full length or truncated HTNV NPs expressed in E. coli were phosphorylated in vitro by CKII suggesting that phosphorylation may occur in vivo at multiple sites. Site specific mutagenesis studies suggest that HTNV NP phosphorylation might occur at unknown sites excluding the site-directly mutagenized locations. Taken together, HTNV NP can be phosphorylated mainly at threonine residues in vivo by CK II treatment.

Citations

Citations to this article as recorded by

Protein kinase CK2: a potential therapeutic target for diverse human diseases
Christian Borgo, Claudio D’Amore, Stefania Sarno, Mauro Salvi, Maria Ruzzene
Signal Transduction and Targeted Therapy.2021;[Epub] CrossRef
Unique Interferon Pathway Regulation by the Andes Virus Nucleocapsid Protein Is Conferred by Phosphorylation of Serine 386
Matthew J. Simons, Elena E. Gorbunova, Erich R. Mackow, Susana López
Journal of Virology.2019;[Epub] CrossRef

Research Support, U.S. Gov't, Non-P.H.S.s

Multiple cellular roles of Neurospora crassa plc-1, splA2, and cpe-1 in regulation of cytosolic free calcium, carotenoid accumulation, stress responses, and acquisition of thermotolerance§: Ananya Barman , Ranjan Tamuli; J. Microbiol. 2015;53(4):226-235. Published online January 31, 2015; DOI: https://doi.org/10.1007/s12275-015-4465-1

342 View
0 Download
21 Crossref

Abstract PDF

Phospholipase C1 (PLC1), secretory phospholipase A2 (sPLA2) and Ca2+/H+ exchanger proteins regulate calcium signaling and homeostasis in eukaryotes. In this study, we investigate functions for phospholipase C1 (plc-1), sPLA2 (splA2) and a Ca2+/H+ exchanger (cpe-1) in the filamentous fungus Neurospora crassa. The Δplc-1, ΔsplA2, and Δcpe-1 mutants exhibited a growth defect on medium supplemented with the divalent ionophore A23187, suggesting that these genes might play a role in regulation of cytosolic free Ca2+ concentration ([Ca2+]c) in N. crassa. The strains lacking plc-1, splA2, and cpe-1 possessed higher carotenoid content than wild type at 8°C, 22°C, and 30°C, and showed increased ultraviolet (UV)- survival under conditions that induced carotenoid accumulation. Moreover, Δplc-1, ΔsplA2, and Δcpe-1 mutants showed reduced survival rate under hydrogen peroxide-induced oxidative stress and induced thermotolerance after exposure to heat shock temperatures. Thus, this study revealed multiple cellular roles for plc-1, splA2, and cpe-1 genes in regulation of [Ca2+]c, carotenoid accumulation, survival under stress conditions, and acquisition of thermotolerance induced by heat shock.

Citations

Citations to this article as recorded by

PacC mediates spatial regulation of the phospholipid metabolism in the apple fruit-Penicillium expansum interaction
Yatong Zhu, Yuanyuan Zong, Di Gong, Xuexue Wang, William Oyom, Yang Bi, Dov Prusky
Postharvest Biology and Technology.2024; 208: 112666. CrossRef
Methods for the detection of intracellular calcium in filamentous fungi
Megha Rasaily, Serena Ngiimei D, Rahul Kumar Thaosen, Surabhi Gupta, Sangeeta Deka, Ranjan Tamuli
MethodsX.2024; 12: 102570. CrossRef
Thiourea Application Increases Seed and Oil Yields in Camelina Under Heat Stress by Modulating the Plant Water Relations and Antioxidant Defense System
Muhammad Ahmad, Ejaz Ahmad Waraich, Usman Zulfiqar, Aman Ullah, Muhammad Farooq
Journal of Soil Science and Plant Nutrition.2023; 23(1): 290. CrossRef
Trichosporon asahii PLA2 Gene Enhances Drug Resistance to Azoles by Improving Drug Efflux and Biofilm Formation
Xiaoping Ma, Hong Liu, Zhen Liu, Ya Wang, Zhijun Zhong, Guangneng Peng, Yu Gu
International Journal of Molecular Sciences.2023; 24(10): 8855. CrossRef
Interaction of calcium responsive proteins and transcriptional factors with the PHO regulon in yeasts and fungi
Juan F. Martín
Frontiers in Cell and Developmental Biology.2023;[Epub] CrossRef
The cell functions of phospholipase C-1, Ca2+/H+ exchanger-1, and secretory phospholipase A2 in tolerance to stress conditions and cellulose degradation in Neurospora crassa
Darshana Baruah, Ranjan Tamuli
Archives of Microbiology.2023;[Epub] CrossRef
Multiple calcium signaling genes play a role in the circadian period of Neurospora crassa
Darshana Baruah, Christy Noche K Marak, Avishek Roy, Dibakar Gohain, Ajeet Kumar, Pallavi Das, Katherine A Borkovich, Ranjan Tamuli
FEMS Microbiology Letters.2023;[Epub] CrossRef
Phospholipase C: Diverse functions in plant biotic stress resistance and fungal pathogenicity
Yuanpeng Fang, Junmei Jiang, Haixia Ding, Xiangyang Li, Xin Xie
Molecular Plant Pathology.2023; 24(9): 1192. CrossRef
A secretory phospholipase A2 of a fungal pathogen contributes to lipid droplet homeostasis, assimilation of insect‐derived lipids, and repression of host immune responses
Juan Deng, Zhuoyue Lu, Huifang Wang, Ning Li, Guimei Song, Qiankuan Zhu, Jingxin Sun, Yongjun Zhang
Insect Science.2022; 29(6): 1685. CrossRef
Phospholipase C (AoPLC2) regulates mycelial development, trap morphogenesis, and pathogenicity of the nematode-trapping fungus Arthrobotrys oligospora
Meihua Xie, Ni Ma, Na Bai, Meichen Zhu, Ke-Qin Zhang, Jinkui Yang
Journal of Applied Microbiology.2022; 132(3): 2144. CrossRef
Disrupting a phospholipase A 2 gene increasing lipid accumulation in the oleaginous yeast Yarrowia lipolytica
J.X. Li, J. Xu, J.C. Ruan, H.M. Meng, H. Su, X.F. Han, M. Lu, F.L. Li, S.A. Wang
Journal of Applied Microbiology.2021; 130(1): 100. CrossRef
Flexible online in-droplet cell/synthetic particle concentration utilizing alternating current electrothermal-flow field-effect transistor
Haizhen Sun, Yukun Ren, Ye Tao, Tianyi Jiang, Hongyuan Jiang
Lab on a Chip.2021; 21(10): 1987. CrossRef
Calcium signaling is involved in diverse cellular processes in fungi
Avishek Roy, Ajeet Kumar, Darshana Baruah, Ranjan Tamuli
Mycology.2021; 12(1): 10. CrossRef
Dominant mutants of the calcineurin catalytic subunit (CNA-1) showed developmental defects, increased sensitivity to stress conditions, and CNA-1 interacts with CaM and CRZ-1 in Neurospora crassa
Ajeet Kumar, Avishek Roy, Mandar V. Deshmukh, Ranjan Tamuli
Archives of Microbiology.2020; 202(4): 921. CrossRef
Calcineurin responsive zinc‐finger‐1 binds to a unique promoter sequence to upregulate neuronal calcium sensor‐1, whose interaction with MID‐1 increases tolerance to calcium stress in Neurospora crassa
Dibakar Gohain, Ranjan Tamuli
Molecular Microbiology.2019; 111(6): 1510. CrossRef
The NcZrg-17 gene of Neurospora crassa encodes a cation diffusion facilitator transporter required for vegetative development, tolerance to endoplasmic reticulum stress and cellulose degradation under low zinc conditions
Anand Tiwari, Serena Daniel Ngiilmei, Ranjan Tamuli
Current Genetics.2018; 64(4): 811. CrossRef
Phospholipases play multiple cellular roles including growth, stress tolerance, sexual development, and virulence in fungi
Ananya Barman, Dibakar Gohain, Utpal Bora, Ranjan Tamuli
Microbiological Research.2018; 209: 55. CrossRef
The pleiotropic vegetative and sexual development phenotypes of Neurospora crassa arise from double mutants of the calcium signaling genes plc-1, splA2, and cpe-1
Ananya Barman, Ranjan Tamuli
Current Genetics.2017; 63(5): 861. CrossRef
Effects of heat stress on changes in physiology and anatomy in two cultivars of Rhododendron
H.F. Shen, B. Zhao, J.J. Xu, W. Liang, W.M. Huang, H.H. Li
South African Journal of Botany.2017; 112: 338. CrossRef
Phenotypic abnormalities of fr , sp , and och-1 single mutants are suppressed by loss of putative GPI-phospholipase A2 in Neurospora crassa
Masayuki Kamei, Yuko Tsukagoshi, Shinpei Banno, Akihiko Ichiishi, Fumiyasu Fukumori, Makoto Fujimura
Mycoscience.2017; 58(3): 137. CrossRef
Calcineurin Subunits A and B Interact to Regulate Growth and Asexual and Sexual Development in Neurospora crassa
Ranjan Tamuli, Rekha Deka, Katherine A. Borkovich, Stefanie Pöggeler
PLOS ONE.2016; 11(3): e0151867. CrossRef

Salinity as a Regulator of DMSP Degradation in Ruegeria pomeroyi DSS-3: Paula Salgado , Ronald Kiene , William Wiebe , Catarina Magalhães; J. Microbiol. 2014;52(11):948-954. Published online October 3, 2014; DOI: https://doi.org/10.1007/s12275-014-4409-1

324 View
0 Download
17 Crossref

Abstract PDF

Dimethylsulfoniopropionate (DMSP) is an important carbon and sulfur source to marine bacterial communities and the main precursor of dimethylsulfide (DMS), a gas that influences atmospheric chemistry and potentially the global climate. In nature, bacterial DMSP catabolism can yield different proportions of DMS and methanethiol (MeSH), but relatively little is known about the factors controlling the pathways of bacterial degradation that select between their formation (cleavage vs. demethiolation). In this study, we carried out experiments to evaluate the influence of salinity on the routes of DMSP catabolism in Ruegeria pomeroyi DSS-3. We monitored DMS and MeSH accumulation in cell suspensions grown in a range of salinities (10, 20, 30 ppt) and with different DMSP amendments (0, 50, 500 μM). Significantly higher concentrations of DMS accumulated in low salinity treatments (10 ppt; P < 0.001), in both Marine Basal Medium (MBM) and half-strength Yeast Tryptone Sea Salts (½ YTSS) media. Results showed a 47.1% and 87.5% decrease of DMS accumulation, from salinity 10 to 20 ppt, in MBM and ½ YTSS media, respectively. On the other hand, MeSH showed enhanced accumulations at higher salinities (20, 30 ppt), with a 90.6% increase of MeSH accumulation from the 20 ppt to the 30 ppt salinity treatments. Our results with R. pomeroyi DSS-3 in culture are in agreement with previous results from estuarine sediments and demonstrate that salinity can modulate selection of the DMSP enzymatic degradation routes, with a consequent potential impact on DMS and MeSH liberation into the atmosphere.

Citations

Citations to this article as recorded by

Response of distributions and emissions of summer biogenic sulfur in the Pacific Arctic to enhanced Pacific Water inflow
Cheng‐Xuan Li, Bao‐Dong Wang, Kan Chen, Gui‐Peng Yang, Jian‐Fang Chen, Li‐Na Lin, Zi‐Cheng Wang
Limnology and Oceanography.2024; 69(1): 81. CrossRef
Nested cross-validation Gaussian process to model dimethylsulfide mesoscale variations in warm oligotrophic Mediterranean seawater
Karam Mansour, Stefano Decesari, Marco Paglione, Silvia Becagli, Matteo Rinaldi
npj Climate and Atmospheric Science.2024;[Epub] CrossRef
SAR92 clade bacteria are potentially important DMSP degraders and sources of climate-active gases in marine environments
Xiao-Yan He, Ning-Hua Liu, Ji-Qing Liu, Ming Peng, Zhao-Jie Teng, Tie-Ji Gu, Xiu-Lan Chen, Yin Chen, Peng Wang, Chun-Yang Li, Jonathan D. Todd, Yu-Zhong Zhang, Xi-Ying Zhang, Jennifer B. H. Martiny
mBio.2023;[Epub] CrossRef
Methylotrophic bacteria with cobalamin-dependent mutases in primary metabolism as potential strains for vitamin B12 production
Darya Dudko, Dirk Holtmann, Markus Buchhaupt
Antonie van Leeuwenhoek.2023; 116(3): 207. CrossRef
Marine gas-phase sulfur emissions during an induced phytoplankton bloom
Delaney B. Kilgour, Gordon A. Novak, Jon S. Sauer, Alexia N. Moore, Julie Dinasquet, Sarah Amiri, Emily B. Franklin, Kathryn Mayer, Margaux Winter, Clare K. Morris, Tyler Price, Francesca Malfatti, Daniel R. Crocker, Christopher Lee, Christopher D. Cappa,
Atmospheric Chemistry and Physics.2022; 22(2): 1601. CrossRef
DMSP Production by Coral-Associated Bacteria
Felicity W.I. Kuek, Cherie A. Motti, Jia Zhang, Ira R. Cooke, Jonathan D. Todd, David J. Miller, David G. Bourne, Jean-Baptiste Raina
Frontiers in Marine Science.2022;[Epub] CrossRef
Stressed out: Bacterial response to high salinity using compatible solute biosynthesis and uptake systems, lessons from Vibrionaceae
Gwendolyn J. Gregory, E. Fidelma Boyd
Computational and Structural Biotechnology Journal.2021; 19: 1014. CrossRef
Evolutionary history of dimethylsulfoniopropionate (DMSP) demethylation enzyme DmdA in marine bacteria
Laura Hernández, Alberto Vicens, Luis E. Eguiarte, Valeria Souza, Valerie De Anda, José M. González
PeerJ.2020; 8: e9861. CrossRef
Role of Calanus sinicus (Copepoda, Calanoida) on Dimethylsulfide and Dimethylsulfoniopropionate Production in Jiaozhou Bay
J. Yu, J.‐Y. Tian, Z.‐Y. Zhang, G.‐P. Yang, H.‐J. Chen, R. Xu, R. Chen
Journal of Geophysical Research: Biogeosciences.2019; 124(8): 2481. CrossRef
Phylogenetic diversity of dimethylsulfoniopropionatedependent demethylase gene dmdA in distantly related bacteria isolated from Arctic and Antarctic marine environments
Yinxin Zeng
Acta Oceanologica Sinica.2019; 38(8): 64. CrossRef
Excellent Degradation Performance of a Versatile Phthalic Acid Esters-Degrading Bacterium and Catalytic Mechanism of Monoalkyl Phthalate Hydrolase
Shuanghu Fan, Junhuan Wang, Yanchun Yan, Jiayi Wang, Yang Jia
International Journal of Molecular Sciences.2018; 19(9): 2803. CrossRef
Distributions of dimethylsulfide and its related compounds in the Yangtze (Changjiang) River Estuary and its adjacent waters in early summer
Ting-Ting Tan, Xi Wu, Chun-Ying Liu, Gui-Peng Yang
Continental Shelf Research.2017; 146: 89. CrossRef
Occurrence and Turnover of Biogenic Sulfur in the Bering Sea During Summer
Cheng‐Xuan Li, Bao‐Dong Wang, Gui‐Peng Yang, Zi‐Cheng Wang, Jian‐Fang Chen, Yang Lyu
Journal of Geophysical Research: Oceans.2017; 122(11): 8567. CrossRef
Evolution of Dimethylsulfoniopropionate Metabolism in Marine Phytoplankton and Bacteria
Hannah A. Bullock, Haiwei Luo, William B. Whitman
Frontiers in Microbiology.2017;[Epub] CrossRef
Small RNAs expressed during dimethylsulfoniopropionate degradation by a model marine bacterium
Andrew S. Burns, Hannah A. Bullock, Christa Smith, Qiuyuan Huang, William B. Whitman, Mary Ann Moran
Environmental Microbiology Reports.2016; 8(5): 763. CrossRef
Osmoprotective role of dimethylsulfoniopropionate (DMSP) for estuarine bacterioplankton
J Motard-Côté, RP Kiene
Aquatic Microbial Ecology.2015; 76(2): 133. CrossRef
Impact of river discharge on distribution of dimethyl sulfide (DMS) and its fluxes in the coastal Bay of Bengal
V.D. Rao, R. Viswanadham, M.D. Bharathi, V.V.S.S. Sarma, M.D. Kumar
Journal of Sea Research.2015; 103: 32. CrossRef

Research Support, Non-U.S. Gov'ts

Serotype-Independent Protection against Pneumococcal Infections Elicited by Intranasal Immunization with Ethanol-Killed Pneumococcal Strain, SPY1: Xiuyu Xu , Jiangping Meng , Yiping Wang , Jie Zheng , Kaifeng Wu , Xuemei Zhang , Yibing Yin , Qun Zhang; J. Microbiol. 2014;52(4):315-323. Published online March 29, 2014; DOI: https://doi.org/10.1007/s12275-014-3583-5

323 View
0 Download
18 Crossref

Abstract PDF

The 23-valent polysaccharide vaccine and the 7-valent pneumococcal conjugate vaccine are licensed vaccines that protect against pneumococcal infections worldwide. However, the incidence of pneumococcal diseases remains high in lowincome countries. Whole-cell vaccines with high safety and strong immunogenicity may be a favorable choice. We previously obtained a capsule-deficient Streptococcus pneumoniae mutant named SPY1 derived from strain D39. As an attenuated live pneumococcal vaccine, intranasal immunization with SPY1 elicits broad serotype-independent protection against pneumococcal infection. In this study, for safety consideration, we inactivated SPY1 with 70% ethanol and intranasally immunized BALB/c mice with killed SPY1 plus cholera toxin adjuvant for four times. Results showed that intranasal immunization with inactivated SPY1 induced strong humoral and cellular immune responses. Intranasal immunization with inactivated SPY1 plus cholera toxin adjuvant elicited effective serotype-independent protection against the colonization of pneumococcal strains 19F and 4 as well as lethal infection of pneumococcal serotypes 2, 3, 14, and 6B. The protection rates provided by inactivated SPY1 against lethal pneumococcal infection were comparable to those of currently used polysaccharide vaccines. In addition, vaccinespecific B-cell and T-cell immune responses mediated the protection elicited by SPY1. In conclusion, the 70% ethanolinactivated pneumococcal whole-cell vaccine SPY1 is a potentially safe and less complex vaccine strategy that offers broad protection against S. pneumoniae.

Citations

Citations to this article as recorded by

Streptococcus pneumoniae serotype distribution in low- and middle-income countries of South Asia: Do we need to revisit the pneumococcal vaccine strategy?
Priya Dhawale, Sanket Shah, Kaushal Sharma, Deepa Sikriwal, Varnik Kumar, Arnabjyoti Bhagawati, Sakshi Dhar, Pratiksha Shetty, Syed Ahmed
Human Vaccines & Immunotherapeutics.2025;[Epub] CrossRef
Otitis media: recent advances in otitis media vaccine development and model systems
Ayesha Zahid, Jennifer C. Wilson, I. Darren Grice, Ian R. Peak
Frontiers in Microbiology.2024;[Epub] CrossRef
Corrected and Republished from: “A Novel, Multiple-Antigen Pneumococcal Vaccine Protects against LethalStreptococcus pneumoniaeChallenge”
Win-Yan Chan, Claire Entwisle, Giuseppe Ercoli, Elise Ramos-Sevillano, Ann McIlgorm, Paola Cecchini, Christopher Bailey, Oliver Lam, Gail Whiting, Nicola Green, David Goldblatt, Jun X. Wheeler, Jeremy S. Brown, Liise-anne Pirofski
Infection and Immunity.2022;[Epub] CrossRef
Non-capsular based immunization approaches to prevent Streptococcus pneumoniae infection
Pedro H. Silva, Yaneisi Vázquez, Camilo Campusano, Angello Retamal-Díaz, Margarita K. Lay, Christian A. Muñoz, Pablo A. González, Alexis M. Kalergis, Susan M. Bueno
Frontiers in Cellular and Infection Microbiology.2022;[Epub] CrossRef
Pneumococcal Choline-Binding Proteins Involved in Virulence as Vaccine Candidates
Julio Sempere, Mirella Llamosí, Idoia del Río Menéndez, Beatriz López Ruiz, Mirian Domenech, Fernando González-Camacho
Vaccines.2021; 9(2): 181. CrossRef
Immune Responses to Irradiated Pneumococcal Whole Cell Vaccine
Eunbyeol Ko, Soyoung Jeong, Min Yong Jwa, A Reum Kim, Ye-Eun Ha, Sun Kyung Kim, Sungho Jeong, Ki Bum Ahn, Ho Seong Seo, Cheol-Heui Yun, Seung Hyun Han
Vaccines.2021; 9(4): 405. CrossRef
Novel Protein-Based Pneumococcal Vaccines: Assessing the Use of Distinct Protein Fragments Instead of Full-Length Proteins as Vaccine Antigens
Theano Lagousi, Paraskevi Basdeki, John Routsias, Vana Spoulou
Vaccines.2019; 7(1): 9. CrossRef
A Novel, Multiple-Antigen Pneumococcal Vaccine Protects against LethalStreptococcus pneumoniaeChallenge
Win-Yan Chan, Claire Entwisle, Giuseppe Ercoli, Elise Ramos-Sevillano, Ann McIlgorm, Paola Cecchini, Christopher Bailey, Oliver Lam, Gail Whiting, Nicola Green, David Goldblatt, Jun X. Wheeler, Jeremy S. Brown, Liise-anne Pirofski
Infection and Immunity.2019;[Epub] CrossRef
Efficacy of whole-cell pneumococcal vaccine in mice: A systematic review and meta-analysis
Mona Mohammadzadeh, Babak Pourakbari, Shima Mahmoudi, Abbas Keshtkar, Mahdi Habibi-Anbouhi, Setareh Mamishi
Microbial Pathogenesis.2018; 122: 122. CrossRef
Construction and evaluation of a whole-cell pneumococcal vaccine candidate
M. Mohammadzadeh, B. Pourakbari, A. Doosti, S. Mahmoudi, M. Habibi-Anbouhi, S. Mamishi
Journal of Applied Microbiology.2018; 125(6): 1901. CrossRef
Gamma-irradiation of Streptococcus pneumoniae for the use as an immunogenic whole cell vaccine
Min Yong Jwa, Soyoung Jeong, Eun Byeol Ko, A Reum Kim, Hyun Young Kim, Sun Kyung Kim, Ho Seong Seo, Cheol-Heui Yun, Seung Hyun Han
Journal of Microbiology.2018; 56(8): 579. CrossRef
spd1672, a novel in vivo-induced gene, affects inflammatory response in a murine model of Streptococcus pneumoniae infection
Lingling Gan, Xuemei Zhang, Xiuyu Xu, Wenchun Xu, Chang Lu, Jin Cui, Hong Wang
Canadian Journal of Microbiology.2018; 64(6): 401. CrossRef
Heterologous prime-boost immunization with live SPY1 and DnaJ protein of Streptococcus pneumoniae induces strong Th1 and Th17 cellular immune responses in mice
Yulan Qiu, Xuemei Zhang, Hong Wang, Xinyuan Zhang, Yunjun Mo, Xiaoyu Sun, Jichao Wang, Yibing Yin, Wenchun Xu
Journal of Microbiology.2017; 55(10): 823. CrossRef
Panel 6: Vaccines
Melinda M. Pettigrew, Mark R. Alderson, Lauren O. Bakaletz, Stephen J. Barenkamp, Anders P. Hakansson, Kevin M. Mason, Johanna Nokso‐Koivisto, Janak Patel, Stephen I. Pelton, Timothy F. Murphy
Otolaryngology–Head and Neck Surgery.2017;[Epub] CrossRef
Attenuated Streptococcus pneumoniae vaccine candidate SPY1 promotes dendritic cell activation and drives a Th1/Th17 response
Song Gao, Lingbin Zeng, Xuemei Zhang, Yingying Wu, Jingjing Cui, Zhixin Song, Xiaoyu Sun, Hong Wang, Yibing Yin, Wenchun Xu
Immunology Letters.2016; 179: 47. CrossRef
SEROTYPE-INDEPENDENT VACCINES AGAINST PNEUMOCOCCAL INFECTION
I. B. Semenova, N. A. Mikhailova
Journal of microbiology, epidemiology and immunobiology.2016; 93(4): 76. CrossRef
Compound 48/80 acts as a potent mucosal adjuvant for vaccination against Streptococcus pneumoniae infection in young mice
Lingbin Zeng, Yusi Liu, Hong Wang, Pu Liao, Zhixin Song, Song Gao, Yingying Wu, Xuemei Zhang, Yibing Yin, Wenchun Xu
Vaccine.2015; 33(8): 1008. CrossRef
Mucosal Immunization with the Live Attenuated Vaccine SPY1 Induces Humoral and Th2-Th17-Regulatory T Cell Cellular Immunity and Protects against Pneumococcal Infection
Xiuyu Xu, Hong Wang, Yusi Liu, Yiping Wang, Lingbing Zeng, Kaifeng Wu, Jianmin Wang, Feng Ma, Wenchun Xu, Yibing Yin, Xuemei Zhang, A. Camilli
Infection and Immunity.2015; 83(1): 90. CrossRef

The Intracellular Mechanism of Action on Escherichia coli of BF2-A/C, Two Analogues of the Antimicrobial Peptide Buforin 2: Gang Hao , Yong-Hui Shi , Ya-Li Tang , Guo-Wei Le; J. Microbiol. 2013;51(2):200-206. Published online April 27, 2013; DOI: https://doi.org/10.1007/s12275-013-2441-1

214 View
0 Download
32 Scopus

Abstract PDF: In the present study, the antimicrobial peptides BF2-A and BF2-C, two analogues of Buforin 2, were chemically synthesized and the activities were assayed. To elucidate the bactericidal mechanism of BF2-A/C and their different antimicrobial activities, the influence of peptides to E. coli cell membrane and targets of intracellular action were researched. Obviously, BF2-A and BF2-C did not induce the influx of PI into the E. coli cells, indicating nonmemebrane permeabilizing killing action. The FITC-labeled BF2-A/C could penetrate the E. coli cell membrane and BF2-C penetrated the cells more efficiently. Furthermore, BF2-A/C could bind to DNA and RNA respectively, and the affinity of BF2-C to DNA was powerful at least over 4 times than that of BF2-A. The present results implied that BF2-A and BF2-C inhibited the cellular functions by binding to DNA and RNA of cells after penetrating the cell membranes, resulting in the rapid cell death. The structure-activity relationship analysis of BF2-A/C revealed that the cell-penetrating efficiency and the affinity ability to DNA were critical factors for determining the antimicrobial potency of both peptides. The more efficient cellpenetrating and stronger affinity to DNA caused that BF2-C displayed more excellent antimicrobial activity and rapid killing kinetics than BF2-A.

Secretion of Truncated Recombinant Rabies Virus Glycoprotein with Preserved Antigenic Properties Using a Co-Expression System in Hansenula polymorpha: Weidong Qian , Frank Aguilar , Ting Wang , Bingsheng Qiu; J. Microbiol. 2013;51(2):234-240. Published online April 27, 2013; DOI: https://doi.org/10.1007/s12275-013-2337-0

266 View
0 Download
8 Crossref

Abstract PDF

Rabies virus infection remains a serious public health threat in the developing world, where cost-concerns make widescale public health interventions impractical. The development of novel and inexpensive ELISA diagnostic antigens is critical in early detection and prevention of complications. The transmembrane glycoprotein (G) of rabies virus (RV) contains an external domain capable of inducing the synthesis of anti-rabies, virus-neutralizing antibodies, in infected or immunized hosts. In our study, the external G domain was synthesized and fused in-frame with a polyhistidine-tag coding sequence present in the expression plasmid. Soluble truncated recombinant G was secreted in Hansenula polymorpha (H. polymorpha) using H. polymorpha-derived calnexin (HpCNE1) overproduction and found to be correctly N-glycosylated. The truncated recombinant G was purified from cell culture supernatant by Ni-agarose affinity chromatography and when compared with the full-length glycoprotein, found to be similarly immunogenic in vaccinated rabbits. These results subsequently led us to explore the potential of truncated recombinant G as a diagnostic antigen in ELISA. Our results show that the truncated recombinant G can detect antibodies directed to both whole virion and native glycoprotein. More sophisticated applications of truncated recombinant G would profit from the correctly N-glycosylated and soluble monomer.

Citations

Citations to this article as recorded by

Ogataea polymorpha as a next-generation chassis for industrial biotechnology
Linfeng Xie, Wei Yu, Jiaoqi Gao, Haoyu Wang, Yongjin J. Zhou
Trends in Biotechnology.2024; 42(11): 1363. CrossRef
Yeast and Virus-like Particles: A Perfect or Imperfect Couple?
Sara Brachelente, Alvaro Galli, Tiziana Cervelli
Applied Microbiology.2023; 3(3): 805. CrossRef
Advances in Using Hansenula polymorpha as Chassis for Recombinant Protein Production
João Heitor Colombelli Manfrão-Netto, Antônio Milton Vieira Gomes, Nádia Skorupa Parachin
Frontiers in Bioengineering and Biotechnology.2019;[Epub] CrossRef
Highly efficient production of rabies virus glycoprotein G ectodomain in Sf9 insect cells
Alexandra Marisa Targovnik, Alejandro Ferrari, Gregorio Juan Mc Callum, Mariana Bernadett Arregui, Ignacio Smith, Lautaro Fidel Bracco, Victoria Alfonso, María Gabriela López, María Martínez-Solís, Salvador Herrero, María Victoria Miranda
3 Biotech.2019;[Epub] CrossRef
Comparison of the protective efficacy between single and combination of recombinant adenoviruses expressing complete and truncated glycoprotein, and nucleoprotein of the pathogenic street rabies virus in mice
Ha-Hyun Kim, Dong-Kun Yang, Jin-Ju Nah, Jae-Young Song, In-Soo Cho
Virology Journal.2017;[Epub] CrossRef
Development of a Time and Cost Benefit Antibody Binding Test-Based Method for Determination of Rabies Vaccine Potency
Vahid Asgary, Nazanin Mojtabavi, Alireza Janani, Tahereh Mousavi, Jamshid Hadjati, Mohammad Sadeq Khosravy, Reza Ahangari Cohan
Viral Immunology.2017; 30(3): 204. CrossRef
Rabies vaccine development by expression of recombinant viral glycoprotein
Renato Mancini Astray, Soraia Attie Calil Jorge, Carlos Augusto Pereira
Archives of Virology.2017; 162(2): 323. CrossRef
Engineering cells to improve protein expression
Su Xiao, Joseph Shiloach, Michael J Betenbaugh
Current Opinion in Structural Biology.2014; 26: 32. CrossRef

NOTE] Molecular Phylogenetic Status of Korean Strain of Podosphaera xanthii, a Causal Pathogen of Powdery Mildew on Japanese Thistle (Cirsium japonicum) in Korea: Hyang Burm Lee; J. Microbiol. 2012;50(6):1075-1080. Published online December 30, 2012; DOI: https://doi.org/10.1007/s12275-012-2618-z

150 View
0 Download
8 Crossref

Abstract PDF

Powdery mildew diseases are sensitive to climate change and spread can be favored by increased temperature and low moisture. During 2011 to 2012, a powdery mildew disease by a Podosphaera species was observed on the leaves of Japanese thistle (Cirsium japonicum) in Korea. The initial sign of this disease included scattered superficial white mycelia on leaves. As the disease progressed, abundant necrotic black spots exhibiting chasmothecia were formed on the leaves. rDNA ITS and 28S homologies of the fungus (EML-CSPW1) showed 100% identity values with those regions from many strains of P. xanthii (syn. P. fusca) via NCBI BLASTN search.

Citations

Citations to this article as recorded by

First Records of Rare Ascomycete Fungi,Acrostalagmus luteoalbus,Bartalinia robillardoides, andCollariella carterifrom Freshwater Samples in Korea
Thuong T. T. Nguyen, Seo Hee Lee, Sun Jeong Jeon, Hyang Burm Lee
Mycobiology.2019; 47(1): 1. CrossRef
Mitochondrial genome of thePodosphaera xanthii: a plant pathogen causes powdery mildew in cucurbits
Seunghwan Kim, Myunghee Jung, Eun A. Oh, Tae Ho Kim, Jeong-Gu Kim
Mitochondrial DNA Part B.2019; 4(2): 4172. CrossRef
Pectolinarin inhibits proliferation, induces apoptosis, and suppresses inflammation in rheumatoid arthritis fibroblast‐like synoviocytes by inactivating the phosphatidylinositol 3 kinase/protein kinase B pathway
Laifang Wang, Na Wang, Qing Zhao, Bingyi Zhang, Yanjie Ding
Journal of Cellular Biochemistry.2019; 120(9): 15202. CrossRef
Isolation and Characterization of Two Rare Mucoralean Species with Specific Habitats
Seo Hee Lee, Thuong T. T. Nguyen, Hyang Burm Lee
Mycobiology.2018; 46(3): 205. CrossRef
Isolation and Characterization of Three Zygomycetous Fungi in Korea: Backusella circina, Circinella muscae, and Mucor ramosissimus
Thuong T. T. Nguyen, Hyang Burm Lee
Mycobiology.2018; 46(4): 317. CrossRef
In renal hypertension, Cirsium japonicum strengthens cardiac function via the intermedin/nitric oxide pathway
Xiaoling Yang, Hui Shao, Yong Chen, Ning Ding, Anning Yang, Jue Tian, Yuanxu Jiang, Guizhong Li, Yideng Jiang
Biomedicine & Pharmacotherapy.2018; 101: 787. CrossRef
Isolation and Characterization of Three Unrecorded Zygomycete Fungi in Korea: Cunninghamella bertholletiae, Cunninghamella echinulata, and Cunninghamella elegans
Thuong T. T. Nguyen, Young-Joon Choi, Hyang Burm Lee
Mycobiology.2017; 45(4): 318. CrossRef
Characterization of Powdery Mildew Caused by Podosphaera fusca Infecting Melothria japonica(Thunb.) Maxim
Jin-Hyeuk Kwon, Hyeong-Jin Jee, Jinwoo Kim
Journal of Agriculture & Life Science.2015; 49(5): 47. CrossRef

Immunoprophylactic Effects of Shiitake Mushroom (Lentinula edodes) against Bordetella bronchiseptica in Mice: Bock-Gie Jung , Jin-A Lee , Bong-Joo Lee; J. Microbiol. 2012;50(6):1003-1008. Published online December 30, 2012; DOI: https://doi.org/10.1007/s12275-012-2365-1

251 View
0 Download
5 Crossref

Abstract PDF

Antimicrobials are used as feed additives to improve growth performance and to prevent subclinical disease challenge in industrial animals. However, these drugs can lead to the development of resistant strains of bacteria. Shiitake mushrooms (SM) (Lentinula edodes) have long been popular as a health food in East Asia. Moreover, SM-derived polysaccharides are well-known as immunostimulants that possess antimicrobial properties. The aim of the present study was to evaluate the immunoprophylactic effects of SM against Bordetella bronchiseptica infection in mice as an initial step towards the development of eco-friendly feed additives to reduce the use of antimicrobials. Although SM had no effect on body weight gain under the un-infected conditions, SM alleviated progressive weight loss and helped in the recovery of body weight in B. bronchiseptica infected mice. Dietary supplementation with SM reinforced bacterial clearance in the infected mice. Of note, SM markedly increased the percentage of various T lymphocytes and the relative mRNA expression levels of tumor necrosis factor-α and interferon-γ in the bronchial lymph node early in the infection. Taken together, these findings suggest that SM could help in the improvement of body weight gain during B. bronchiseptica infection and may enhance the protective immune activity against a subclinical disease challenge, such as B. bronchiseptica infection in mice, probably by a strong stimulation of non-specific immune responses. Hence, SM may provide an alternative to reduce use of antimicrobials. Confirmation of the beneficial effects of SM as a feed additive is now required in industrial animals.

Citations

Citations to this article as recorded by

Immunomodulating Effects of Fungal Beta-Glucans: From Traditional Use to Medicine
Hidde P. van Steenwijk, Aalt Bast, Alie de Boer
Nutrients.2021; 13(4): 1333. CrossRef
A new lanostane triterpenoid from Ganoderma resinaceum
Qiaofen Yang, Kejun He, Shiyu Qiu, Aoyi Zheng, Qiuyue Hu, Zuhong Ma, Miao Dong, Min Zhou
Journal of Asian Natural Products Research.2020; 22(11): 1095. CrossRef
Microbiome Analysis Investigating the Impacts of Fermented Spent Mushroom Substrates on the Composition of Microbiota in Weaned Piglets Hindgut
Qien Qi, Qiaoli Peng, Min Tang, Dongling Chen, Huihua Zhang
Frontiers in Veterinary Science.2020;[Epub] CrossRef
The effect and mechanism of ultrasonic treatment on the postharvest texture of shiitake mushrooms (Lentinula edodes)
Zhendan Ni, Shixiang Xu, Tiejin Ying
International Journal of Food Science & Technology.2018; 53(8): 1847. CrossRef
Purification and identification of a polysaccharide from medicinal mushroomAmauroderma rudewith immunomodulatory activity and inhibitory effect on tumor growth
Honghui Pan, Yuanyuan Han, Jiguo Huang, Xiongtao Yu, Chunwei Jiao, Xiaobing Yang, Preet Dhaliwal, Yizhen Xie, Burton B. Yang
Oncotarget.2015; 6(19): 17777. CrossRef

Seasonal Changes in Nitrogen-Cycle Gene Abundances and in Bacterial Communities in Acidic Forest Soils: Jaejoon Jung , Jinki Yeom , Jiwon Han , Jisun Kim , Woojun Park; J. Microbiol. 2012;50(3):365-373. Published online June 30, 2012; DOI: https://doi.org/10.1007/s12275-012-1465-2

257 View
0 Download
34 Crossref

Abstract PDF

The abundance of genes related to the nitrogen biogeochemical cycle and the microbial community in forest soils (bacteria, archaea, fungi) were quantitatively analyzed via real-time PCR using 11 sets of specific primers amplifying nifH, bacterial amoA, archaeal amoA, narG, nirS, nirK, norB, nosZ, bacterial 16S rRNA gene, archaeal 16S rRNA gene, and the ITS sequence of fungi. Soils were sampled from Bukhan Mountain from September of 2010 to July of 2011 (7 times). Bacteria were the predominant microbial community in all samples. However, the abundance of archaeal amoA was greater than bacterial amoA throughout the year. The abundances of nifH, nirS, nirK, and norB genes changed in a similar pattern, while narG and nosZ appeared in sensitive to the environmental changes. Clone libraries of bacterial 16S rRNA genes were constructed from summer and winter soil samples and these revealed that Acidobacteria was the most predominant phylum in acidic forest soil environments in both samples. Although a specific correlation of environmental factor and gene abundance was not verified by principle component analysis, our data suggested that the combination of biological, physical, and chemical characteristics of forest soils created distinct conditions favoring the nitrogen biogeochemical cycle and that bacterial communities in undisturbed acidic forest soils were quite stable during seasonal change.

Citations

Citations to this article as recorded by

Shifts in soil prokaryotic community structure due to clear-cutting secondary Acacia mangium forests and replacing with Eucalyptus urophylla
Yun-Long Zhang, Ning Pan, Wen-Tao Qiao, Richard P. Dick, Dao-Lin Du, Kun Chen, Shan-Shan Qi, Yan Li, Yi Zhou, Yong-Feng Wang
Journal of Environmental Management.2025; 386: 125742. CrossRef
Research Progress on Denitrification Performance of Aerobic Denitrifying Bacteria and Its Application in Wastewater Treatment
伟姚
Advances in Microbiology.2024; 13(01): 49. CrossRef
Returning farmland to forests and grasslands promotes soil quality restoration in Northeast China: Evidence from soil nitrogen cycle
Bin Li, Junnan Ding, Xiaoqian Liu, Dan Zhu, Mengmeng Zhang, Lina Qu, Wei Li, Yue Wang, Xin Li
Applied Soil Ecology.2024; 203: 105655. CrossRef
First Report of Rhizopus arrhizus (syn. R. oryzae) Causing Garlic Bulb Soft Rot in Hebei Province, China
Y. N. Zhang, J. Z. Wang, B. Swingle, B. Y. Niu, J. Xu, X. Ma, H. L. Wei, M. Gao
Plant Disease.2023; 107(3): 949. CrossRef
Potential to mitigate nitrogen emissions from paddy runoff: A microbiological perspective
He Duan, Haodong Wang, Sisi Li, Wangzheng Shen, Yanhua Zhuang, Fulin Zhang, Xudong Li, Limei Zhai, Hongbin Liu, Liang Zhang
Science of The Total Environment.2023; 865: 161306. CrossRef
Comparison and Selection of Conventional PCR Primer Sets for Studies Associated with Nitrogen Cycle Microorganisms in Surface Soil
Siwon Lee, Yong-Ju Jung, Jinah Moon, Jin-Young Lee, Heejung Kim, Jae-E Yang, Hyunji Lee, Jaewon Jung, Ha-Rang Kim
Applied Sciences.2022; 12(20): 10314. CrossRef
Metagenomic reconstruction of nitrogen and carbon cycling pathways in forest soil: Influence of different hardwood tree species
Charlene N. Kelly, Geoffrey W. Schwaner, Jonathan R. Cumming, Timothy P. Driscoll
Soil Biology and Biochemistry.2021; 156: 108226. CrossRef
Soil extracellular enzyme activities and the abundance of nitrogen-cycling functional genes responded more to N addition than P addition in an Inner Mongolian meadow steppe
Hong Xiao, Helong Yang, Mengli Zhao, Thomas A. Monaco, Yuping Rong, Ding Huang, Qian Song, Kun Zhao, Deping Wang
Science of The Total Environment.2021; 759: 143541. CrossRef
Agricultural management and cultivation period alter soil enzymatic activity and bacterial diversity in litchi (Litchi chinensis Sonn.) orchards
Yu-Pei Chen, Chia-Fang Tsai, Asif Hameed, Yu-Jen Chang, Chiu-Chung Young
Botanical Studies.2021;[Epub] CrossRef
Agricultural management practices influence the soil enzyme activity and bacterial community structure in tea plantations
Yu-Pei Chen, Chia-Fang Tsai, P. D. Rekha, Sudeep D. Ghate, Hsi-Yuan Huang, Yi-Han Hsu, Li-Ling Liaw, Chiu-Chung Young
Botanical Studies.2021;[Epub] CrossRef
Nitrogen-cycling gene pool shrunk by species interactions among denser bacterial and archaeal community stimulated by excess organic matter and total nitrogen in a eutrophic bay
Yile Tao, Liyue Zhang, Zhiguo Su, Tianjiao Dai, Yan Zhang, Bei Huang, Donghui Wen
Marine Environmental Research.2021; 169: 105397. CrossRef
Groundwater Depth Overrides Tree-Species Effects on the Structure of Soil Microbial Communities Involved in Nitrogen Cycling in Plantation Forests
Tiehang Wu, Ashley Gray, Gan Liu, Hilary Kaminski, Bolanle Osi Efa, Doug P. Aubrey
Forests.2020; 11(3): 275. CrossRef
Functional diversity and abundance of nitrogen cycle-related genes in paddy soil
Anamika Khanal, Ji-Hoon Lee
Applied Biological Chemistry.2020;[Epub] CrossRef
An interdependent relationship between microbial ecosystems and ferromanganese nodules from the Western Pacific Ocean
Xiao-Dong Jiang, Jun-Li Gong, Jiang-Bo Ren, Qing-Song Liu, Jian Zhang, Yu-Min Chou
Sedimentary Geology.2020; 398: 105588. CrossRef
Encapsulation of Trichoderma harzianum Preserves Enzymatic Activity and Enhances the Potential for Biological Control
Cintia Rodrigues Maruyama, Natália Bilesky-José, Renata de Lima, Leonardo Fernandes Fraceto
Frontiers in Bioengineering and Biotechnology.2020;[Epub] CrossRef
First Report of Tuber Soft Rot of Jerusalem Artichoke (Helianthus tuberosus) Caused by Rhizopus arrhizus in Qinghai Province of China
S. P. Yang, G. L. Du, J. Tian, X. T. Jiang, X. M. Sun, Y. Li, J. Li, Q. W. Zhong
Plant Disease.2020; 104(12): 3265. CrossRef
Functional structures of soil microbial community relate to contrasting N2O emission patterns from a highly acidified forest
Yina Zou, Daliang Ning, Yong Huang, Yuting Liang, Hui Wang, Lei Duan, Tong Yuan, Zhili He, Yunfeng Yang, Kai Xue, Joy D. Van Nostrand, Jizhong Zhou
Science of The Total Environment.2020; 725: 138504. CrossRef
Distinct pattern of nitrogen functional gene abundances in top- and subsoils along a 120,000-year ecosystem development gradient
Stephanie Turner, Robert Mikutta, Georg Guggenberger, Frank Schaarschmidt, Axel Schippers
Soil Biology and Biochemistry.2019; 132: 111. CrossRef
Using digital polymerase chain reaction to characterize microbial communities in wetland mesocosm soils under different vegetation and seasonal nutrient loadings
Parita Shah, Zhi-Wu Wang
Science of The Total Environment.2019; 689: 269. CrossRef
Denitrification Aligns with N2 Fixation in Red Sea Corals
Arjen Tilstra, Yusuf C. El-Khaled, Florian Roth, Nils Rädecker, Claudia Pogoreutz, Christian R. Voolstra, Christian Wild
Scientific Reports.2019;[Epub] CrossRef
Short-Term Response of the Soil Microbial Abundances and Enzyme Activities to Experimental Warming in a Boreal Peatland in Northeast China
Yanyu Song, Changchun Song, Jiusheng Ren, Xiuyan Ma, Wenwen Tan, Xianwei Wang, Jinli Gao, Aixin Hou
Sustainability.2019; 11(3): 590. CrossRef
Responses of nitrification and denitrification to nitrogen and phosphorus fertilization: does the intrinsic soil fertility matter?
Ying Wang, Hongfei Ji, Rui Wang, Shengli Guo
Plant and Soil.2019; 440(1-2): 443. CrossRef
Glyphosate effects on symbiotic nitrogen fixation in glyphosate-resistant soybean
Lu Fan, Yucheng Feng, David B. Weaver, Dennis P. Delaney, Glenn R. Wehtje, Guoying Wang
Applied Soil Ecology.2017; 121: 11. CrossRef
Improved DNA purification with quality assurance for evaluation of the microbial genetic content of constructed wetlands
Wenda Huang, Jingjing Guo, Ran Tao, Ying Man, Yunv Dai, Yang Yang
Applied Microbiology and Biotechnology.2017; 101(21): 7923. CrossRef
Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change
Salvador Lladó, Rubén López-Mondéjar, Petr Baldrian
Microbiology and Molecular Biology Reviews.2017;[Epub] CrossRef
Correlation between Changes of the Abundance of the Nitrification and Denitrification and Quality of the Effluent in Constructed Wetland
Zhu Ying, Tian Chao, Tang Houquan, Yanqiu Shao, Qingfeng Chen
International Journal of Environmental Science and Development.2016; 7(12): 875. CrossRef
Microbial Nitrogen-Cycle Gene Abundance in Soil of Cropland Abandoned for Different Periods
Huhe, Shinchilelt Borjigin, Buhebaoyin, Yanpei Wu, Minquan Li, Yunxiang Cheng, Bas E. Dutilh
PLOS ONE.2016; 11(5): e0154697. CrossRef
Influence of nitrogen fertilization on soil ammonia oxidizer and denitrifier abundance, microbial biomass, and enzyme activities in an alpine meadow
Xiao-Fang Tian, Hang-Wei Hu, Qiong Ding, Ming-Hua Song, Xing-Liang Xu, Yong Zheng, Liang-Dong Guo
Biology and Fertility of Soils.2014; 50(4): 703. CrossRef
Temporal changes in soil bacterial and archaeal communities with different fertilizers in tea orchards
Hua Wang, Shao-hui Yang, Jing-ping Yang, Ya-min Lv, Xing Zhao, Ji-liang Pang
Journal of Zhejiang University SCIENCE B.2014; 15(11): 953. CrossRef
Warming-induced enhancement of soil N2O efflux linked to distinct response times of genes driving N2O production and consumption
S. A. Billings, L. K. Tiemann
Biogeochemistry.2014; 119(1-3): 371. CrossRef
Effect of long-term different fertilization on bacterial community structures and diversity in citrus orchard soil of volcanic ash
Jae Ho Joa, Hang Yeon Weon, Hae Nam Hyun, Young Chull Jeun, Sang Wook Koh
Journal of Microbiology.2014; 52(12): 995. CrossRef
Climate Change Induces Shifts in Abundance and Activity Pattern of Bacteria and Archaea Catalyzing Major Transformation Steps in Nitrogen Turnover in a Soil from a Mid-European Beech Forest
Silvia Gschwendtner, Javier Tejedor, Carolin Bimueller, Michael Dannenmann, Ingrid Kögel Knabner, Michael Schloter, Shuijin Hu
PLoS ONE.2014; 9(12): e114278. CrossRef
Pedobacter jeongneungensis sp. nov., isolated from forest soil
Jaejoon Jung, Woojun Park
Journal of Microbiology.2012; 50(4): 660. CrossRef
Effects of nutritional input and diesel contamination on soil enzyme activities and microbial communities in antarctic soils
Jiwon Han, Jaejoon Jung, Seunghun Hyun, Hyun Park, Woojun Park
Journal of Microbiology.2012; 50(6): 916. CrossRef

First
Prev
Page of 2
Next
Last

Search