- Flavihumibacter profundi sp. nov., isolated from eutrophic freshwater sediment
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Ting-Ting Ren , Chun-Zhi Jin , Feng-Jie Jin , Taihua Li , Chang-Jin Kim , Hee-Mock Oh , Hyung-Gwan Lee , Long Jin
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J. Microbiol. 2018;56(7):467-471. Published online June 28, 2018
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DOI: https://doi.org/10.1007/s12275-018-7567-8
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A Gram-stain-positive, aerobic, non-motile, non-spore-forming,
and rod-shaped bacterium, designated strain CHu64-
6-1T, was isolated from a 67-cm-long sediment core collected
from the Daechung Reservoir at a water depth of 17-m in
Daejeon, Republic of Korea. Comparative 16S rRNA gene
sequence studies placed the new isolate in the class Sphingobacteriia,
and the isolate is notably most closely related to
Flavihumibacter sediminis CJ663T (98.1% similarity), Flavihumibacter
solisilvae 3-3T (97.8%), Flavihumibacter petaseus
T41T (97.5%), Flavihumibacter cheonanensis WS16T (97.4%),
and Flavihumibacter stibioxidans YS-17T (97.2%). The cells of
strain CHu64-6-1T formed yellow colonies on R2A agar and
contained MK-7 as the only menaquinone, phosphatidylethanolamine,
an unidentified phospholipid, and two unidentified
aminolipids as the major polar lipids, and C15:0
iso, C17:0 iso 3-OH, C15:1 iso G, and C16:1 ω5c as the major
fatty acids (> 5%). The DNA G + C content of the genome
was determined to be 46.5 mol%. The DNA-DNA hybridization
values of strain CHu64-6-1T with F. sediminis CJ663T,
F. solisilvae 3-3T, F. petaseus T41T, F. cheonanensis WS16T,
and F. stibioxidans YS-17T were 12.4–33.2%. Based on the
combined genotypic and phenotypic data, we propose that
strain CHu64-6-1T represents a novel species of the genus
Flavihumibacter, for which the name Flavihumibacter profundi
sp. nov. is proposed. The type strain is CHu64-6-1T
(= KCTC 62290T = CCTCC AB 2018060T).
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Citations
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Flavihumibacter fluminis sp. nov., a novel thermotolerant bacterium isolated from river silt
Bai Guo, Weidong Mu, Sidi Mao, Shucheng Li, Shaomei Yang, Aijv Liu, Shuzhen Wei, Xiuyun Li, Feng Sang, Hongkuan Deng, Yuling Dong, Hongliang Liu, Zhiwei Chen
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Lacibacter sediminis sp. nov., isolated from contaminated freshwater sediment
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- Paenibacillus telluris sp. nov., a Novel Phosphate-Solubilizing Bacterium Isolated from Soil
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Jae-Chan Lee , Chang-Jin Kim , Ki-Hong Yoon
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J. Microbiol. 2011;49(4):617-621. Published online September 2, 2011
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DOI: https://doi.org/10.1007/s12275-011-0471-0
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608
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A phosphate-solubilizing bacterial strain designated PS38T was isolated from farm soil. The isolate was
a Gram-positive, motile, endospore-forming, rod-shaped bacterium. It grew optimally at 37oC and pH 7.5.
The predominant cellular fatty acids were anteiso-C15:0, anteiso-C17:0, and iso-C16:0. The DNA G+C content
was 49.5 mol% and the predominant menaquinone was MK-7. Phylogenetic analyses based on 16S rRNA
gene sequences showed that the strain PS38T belonged to the genus Paenibacillus and was most closely
related to Paenibacillus chibensis JCM 9905T, P. barengoltzii SAFN-016T, P. timonensis 2301032T, and P.
motobuensis MC10T with 96.3%, 96.0%, 95.9%, and 95.5% 16S rRNA gene sequence similarity, respectively.
On the basis of morphological, chemotaxonomic, physiological, and phylogenetic properties, strain PS38T
represents a novel species of the genus Paenibacillus, for which the name Paenibacillus telluris sp. nov.
is proposed. The type strain is PS38T (=KCTC 13946T =CGMCC 1.10695T).
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- Virgibacillus xinjiangensis sp. nov., Isolated from a Salt Lake of Xin-jiang Province in China
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Che Ok Jeon , Jeong Myeong Kim , Dong-Jin Park , Li-Hua Xu , Cheng-Lin Jiang , Chang-Jin Kim
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DOI: https://doi.org/10.1007/s12275-009-0107-9
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736
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A strictly aerobic Gram-positive, moderately halophilic spore forming bacterium, designated strain SL6-1T, was isolated from a salt lake in Xin-jiang province, China. Growth of strain SL6-1T was observed at NaCl concentrations of 0~20% (w/v) (the optimum being 5~7%, w/v). The peptidoglycan type of strain SL6-1T was A1γ-meso-diaminopimelic acid and its major cellular fatty acids were iso-C14:0 and iso-C16:0 and anteiso-C15:0. The major respiratory isoprenoid quinone was MK-7 and the G+C content of the genomic DNA was 44.5 mol%. The major cellular phospholipids were phosphatidylglycerol and diphosphatidylglycerol. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain SL6-1T formed a phylogenetic lineage within the genus Virgibacillus. Based on 16S rRNA gene sequence similarity, the strain was most closely related to Virgibacillus olivae E308T, Virgibacillus kekensis YIM kkny16T, Virgibacillus marismortui DSM 12325T with 97.1%, 97.1%, and 97.0% gene sequence similarities, respectively and the sequence similarities to other related taxa were less than 96.7%. The DNA relatedness values between strain SL6-1T and V. olivae E308T, V. kekensis YIM kkny16T, V. marismortui DSM 12325T were 16.7%, 51.0%, and 22.8%, respectively. On the basis of physiological, biochemical and phylogenetic properties, strain SL6-1T represents a novel species, for which the name Virgibacillus xinjiangensis sp. nov. is proposed. The type strain is SL6-1T (=KCTC 13128T =DSM 19031T).
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Citations
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- Molecular Taxonomy of a Soil Actinomycete Isolate, KCCM10454 Showing Neuroprotective Activity by 16S rRNA and rpoB Gene Analysis
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Bong-Hee Lee , Hong Kim , Hyun-Ju Kim , Yoon-Kyu Lim , Kyung-Hee Byun , Brian Hutchinson , Chang-Jin Kim , Young-Hwan Ko , Keun-Hwa Lee , Chang-Yong Cha , Yoon-Hoh Kook , Bum-Joon Kim
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DOI: https://doi.org/2158 [pii]
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Abstract
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Epilepsy constitutes a significant public health problem, and even the newest drugs and neurosurgical techniques have proven unable to cure the disease. In order to select a group of isolates which could generate an active compound with neuroprotective or antiepileptic properties, we isolated 517 actinomycete strains from soil samples taken from Jeju Island, in South Korea. We then screened these strains for possible anti-apoptotic effects against serum deprivation-induced hippocampal cell death, using the 3-(4, 5-dimethylthiazol-2-yl)2,5-diphenyl-tetrazolium bromide (MTT) assay as an in vitro test. The excitotoxic glutamate analog, kainic acid (KA), was used to induce seizures in experimental mice in our in vivo tests. As a result of this testing, we located one strain which exhibited profound neuroprotective activity. This strain was identified as a Streptomyces species, and exhibited the rifampin-resistant genotype, Asn(AAC)^442, according to the results of 16S rRNA and rpoB gene analyses
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