- Sphingomonas parvus sp. nov. isolated from a ginseng-cultivated soil
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Jae-Hyung Ahn , Byoung-chan Kim , Soo-Jin Kim , Geun-Hey Lee , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2015;53(10):673-677. Published online October 2, 2015
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DOI: https://doi.org/10.1007/s12275-015-5132-2
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Strain GP20-2T was isolated from a soil cultivated with ginseng
in Korea. The 16S rRNA gene sequence of this strain
showed the highest sequence similarity with Sphingomonas
daechungensis CH15-11T (96.7%) and Sphingomonas sediminicola
Dae 20T (96.2%) among the type strains. The strain
GP20-2T was a strictly aerobic, Gram-negative, non-motile,
rod-shaped bacterium that formed very tiny colonies, less than
0.3 mm in diameter after 10 days on R2A agar. The strain
grew at 10–35°C (optimum, 35°C), at a pH of 5.0–8.0 (optimum,
pH 6.0), and in the absence of NaCl. The DNA G+C
content of strain GP20-2T was 67.2 mol%. It contained ubiquinone
Q-10 as the major isoprenoid quinone, and summed
feature 8 (C18:1ω6c and/or C18:1ω7c, 49.8%) and C16:0 (17.0%)
as the major fatty acids. On the basis of evidence from our
polyphasic taxonomic study, we concluded that strain GP20-2T
should be classified as a novel species of the genus Sphingomonas,
for which the name Sphingomonas parvus sp. nov. is
proposed. The type strain is GP20-2T (=KACC 12865T =DSM
100456T).
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Citations
Citations to this article as recorded by  - Validation list no. 228: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Sphingomonas segetis sp. nov., isolated from spinach farming field soil
Jae-Chan Lee, Kyung-Sook Whang
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(6): 3905. CrossRef - Sphingomonas ginkgonis sp. nov., isolated from phyllosphere of Ginkgo biloba
Inseong Cha, Heeyoung Kang, Haneul Kim, Kiseong Joh
International Journal of Systematic and Evolutionary Microbiology.2019; 69(10): 3224. CrossRef - An Effect of Salt Concentration and Inoculum Size on Poly(Vinyl Alcohol) Utilization by Two Sphingomonas Strains
Markéta Měrková, Markéta Julinová, Josef Houser, Jan Růžička
Journal of Polymers and the Environment.2018; 26(6): 2227. CrossRef - Sphingomonas limnosediminicola sp. nov. and Sphingomonas palustris sp. nov., isolated from freshwater environments
Ji Hee Lee, Dae In Kim, Han Na Choe, Soon Dong Lee, Chi Nam Seong
International Journal of Systematic and Evolutionary Microbiology.2017; 67(8): 2834. CrossRef - Sphingomonas lutea sp. nov., isolated from freshwater of an artificial reservoir
Ji Hee Lee, Dae In Kim, Joo Won Kang, Chi Nam Seong
International Journal of Systematic and Evolutionary Microbiology.2016; 66(12): 5493. CrossRef
- Paenibacillus cucumis sp. nov. Isolated from Greenhouse Soil
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Jae-Hyung Ahn , Byoung-chan Kim , Byung-Yong Kim , Soo-Jin Kim , Jaekyeong Song , Soon-Wo Kwon , Hang-Yeon Weon
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J. Microbiol. 2014;52(6):460-464. Published online May 29, 2014
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DOI: https://doi.org/10.1007/s12275-014-4071-7
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992
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Strain CO 4-7T was isolated from greenhouse soil used for cultivation of cucumbers in Korea. The 16S rRNA gene sequence of strain CO 4-7T showed the highest sequence similarity with Paenibacillus contaminans CKOBP-6T (94.2%) among the type strains. Strain CO 4-7T was a strictly aerobic, Gram-staining-positive, endospore-forming, and motile rodshaped bacterium. Strain CO 4-7T grew at 10–45°C (optimum, 30°C), at pH 6.0–7.5 (optimum, pH 6.5) and in the presence of 0–5% NaCl (optimum, 0.5%). The DNA G+C content of strain CO 4-7T was 48.5 mol%. It contained MK-7 as the major isoprenoid quinone and anteiso-C15:0 (51.8%), C16:0 (12.7%), and iso-C16:0 (8.6%) as the major fatty acids. The cell wall contained meso-diaminopimelic acid. Based on evidence from our polyphasic taxonomic study, it was concluded that strain CO 4-7T should be classified as a novel species of the genus Paenibacillus, for which, the name Paenibacillus cucumis sp. nov. is proposed. The type strain is CO 4-7T (=KACC 17444T=JCM 19515T).
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Citations
Citations to this article as recorded by - Enhancement of stability and activity of RSD amylase from Paenibacillus lactis OPSA3 for biotechnological applications by covalent immobilization on green silver nanoparticles
Emmanuel Tobechukwu Ugwuoji, Ifeanyi S. Eze, Tochukwu Nwamaka T. Nwagu, Lewis Iheanacho Ezeogu
International Journal of Biological Macromolecules.2024; 279: 135132. CrossRef - Biological control of a novel strain Bacillus velezensis CMML21–47 against sweet potato wilt and black rot diseases
Yoeng-Seok Yoon, Ju Gyeong Lee, Narayan Chandra Paul, Soyoon Park, Sojung Ryu, Hyunsook Kim, Hyeong Woo Kim, Seonghun Im, Hyunkyu Sang, Gui Hwan Han
Biological Control.2024; 195: 105541. CrossRef - Detergent-stable amylase production by Paenibacillus lactis strain OPSA3 isolated from soil; optimization by response surface methodology
Emmanuel Tobechukwu Ugwuoji, Tochukwu Nwamaka T. Nwagu, Lewis Iheanacho Ezeogu
Biotechnology Reports.2023; 39: e00808. CrossRef - Comparative genomic and functional analyses of Paenibacillus peoriae ZBSF16 with biocontrol potential against grapevine diseases, provide insights into its genes related to plant growth-promoting and biocontrol mechanisms
Lifang Yuan, Hang Jiang, Xilong Jiang, Tinggang Li, Ping Lu, Xiangtian Yin, Yanfeng Wei
Frontiers in Microbiology.2022;[Epub] CrossRef - Siphonobacter intestinalis sp. nov., a bacterium isolated from the feces of Pseudorhynchus japonicus
Shin Ae Lee, Jeong Myeong Kim, Jae-Hyung Ahn, Jae-Ho Joa, Soo-Jin Kim, Mee-Kyung Sang, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
Journal of Microbiology.2016; 54(11): 709. CrossRef - Sphingomonas parvus sp. nov. isolated from a ginseng-cultivated soil
Jae-Hyung Ahn, Byoung-chan Kim, Soo-Jin Kim, Geun-Hey Lee, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
Journal of Microbiology.2015; 53(10): 673. CrossRef - The Prevalence and Control of Bacillus and Related Spore-Forming Bacteria in the Dairy Industry
Nidhi Gopal, Colin Hill, Paul R. Ross, Tom P. Beresford, Mark A. Fenelon, Paul D. Cotter
Frontiers in Microbiology.2015;[Epub] CrossRef -
Mucilaginibacter ginsengisoli sp. nov., isolated from a ginseng-cultivated soil
Jae-Hyung Ahn, Byoung-chan Kim, Jae-Ho Joa, Soo-Jin Kim, Jaekyeong Song, Soon-Wo Kwon, Hang-Yeon Weon
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_11): 3933. CrossRef
- Sunxiuqinia dokdonensis sp. nov., Isolated from Deep Sub-Seafloor Sediment
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Dong-Ho Chang , Jae-Bong Lee , Geun-Hye Lee , Moon-Soo Rhee , Haewon Lee , Kyung Sook Bae , Doo-Sang Park , Byoung-Chan Kim
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J. Microbiol. 2013;51(6):741-746. Published online December 19, 2013
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DOI: https://doi.org/10.1007/s12275-013-3492-z
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1,238
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Abstract
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A novel facultatively anaerobic strain DH1T was isolated
from deep sub-seafloor sediment at a depth of 900 m below
the seafloor off Seo-do (the west part of Dokdo Island) in
the East Sea of the Republic of Korea. The new strain was
characterized using polyphasic approaches. The isolate was
Gram-stain-negative, motile by gliding, non-spore-forming
rods, oxidase-negative, and catalase-positive; and formed
colonies of orange-red color. The NaCl range for growth
was 0.5–7.0% (w/v) and no growth was observed in the absence
of NaCl. The isolate grew optimally at 30°C, with 2%
(w/v) NaCl and at pH 7. The cell-wall hydrolysates contained
ribose as a major sugar. The DNA G+C content was 40.8
mol%. The closest related strains are Sunxiuqinia faeciviva
JAM-BA0302T and Sunxiuqinia elliptica DQHS-4T (97.9 and
96.3% sequence similarity, respectively). The level of DNADNA
relatedness between strain DH1T and S. faeciviva JAMBA0302T
was around 41% (but only 6% between DH1T and
S. elliptica DQHS-4T). The major cellular fatty acids of the
isolate were contained iso-C15:0 (25.9%), anteiso-C15:0 (16.7%),
and summed feature 9 (comprising C16:0 3-OH and/or unknown
fatty acid of dimethylacetal ECL 17.157; 13.2%).
The predominant menaquinone was MK-7. On the basis of
polyphasic evidence from this study, the isolate was considered
to represent a novel species of the genus Sunxiuqinia,
for which the name Sunxiuqinia dokdonensis sp. nov. is
proposed; the type strain is DH1T (=KCTC 32503T =CGMCC
1.12676T =JCM 19380T).
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Citations
Citations to this article as recorded by - Validation List no. 229: valid publication of new names and new combinations effectively published outside the IJSEM
Aharon Oren, Markus Göker
International Journal of Systematic and Evolutionary Microbiology
.2026;[Epub] CrossRef -
Gaoshiqia hydrogeniformans sp. nov., a novel hydrogen-producing bacterium isolated from a deep diatomaceous shale formation
Akio Ueno, Kiyoshi Sato, Shuji Tamamura, Takuma Murakami, Hidenori Inomata, Satoshi Tamazawa, Yuki Amano, Kazuya Miyakawa, Takeshi Naganuma, Toshifumi Igarashi
International Journal of Systematic and Evolutionary Microbiology
.2025;[Epub] CrossRef - Deltaproteobacterium Strain KaireiS1, a Mesophilic, Hydrogen-Oxidizing and Sulfate-Reducing Bacterium From an Inactive Deep-Sea Hydrothermal Chimney
Nicole Adam, Yuchen Han, Katja Laufer-Meiser, Rebecca Bährle, Ulrich Schwarz-Schampera, Axel Schippers, Mirjam Perner
Frontiers in Microbiology.2021;[Epub] CrossRef -
Sunxiuqinia indica sp. nov., isolated from deep sea
Jianyang Li, Mingming Qi, Qiliang Lai, Guangyi Wang, Zongze Shao
International Journal of Systematic and Evolutionary Microbiology
.2020; 70(7): 4186. CrossRef - Description of Maribellus sediminis sp. nov., a marine nitrogen-fixing bacterium isolated from sediment of cordgrass and mangrove
Zhaobin Huang, Yuzhong Hu, Qiliang Lai, Yu Guo
Systematic and Applied Microbiology.2020; 43(4): 126099. CrossRef - Simulated reactive zone with emulsified vegetable oil for the long-term remediation of Cr(VI)-contaminated aquifer: dynamic evolution of geological parameters and groundwater microbial community
Jun Dong, Jinqiu Yu, Qiburi Bao
Environmental Science and Pollution Research.2018; 25(34): 34392. CrossRef - Whole-genome sequence of Sunxiuqinia dokdonensis DH1 T , isolated from deep sub-seafloor sediment in Dokdo Island
Sooyeon Lim, Dong-Ho Chang, Byoung-Chan Kim
Genomics Data.2016; 9: 95. CrossRef - The composition, localization and function of low-temperature-adapted microbial communities involved in methanogenic degradations of cellulose and chitin from Qinghai-Tibetan Plateau wetland soils
Y. Dai, Z. Yan, L. Jia, S. Zhang, L. Gao, X. Wei, Z. Mei, X. Liu
Journal of Applied Microbiology.2016; 121(1): 163. CrossRef -
Roseimarinus sediminis gen. nov., sp. nov., a facultatively anaerobic bacterium isolated from coastal sediment
Wen-Jie Wu, Qian-Qian Liu, Guan-Jun Chen, Zong-Jun Du
International Journal of Systematic and Evolutionary Microbiology
.2015; 65(Pt_7): 2260. CrossRef - Erysipelothrix larvae sp. nov., isolated from the larval gut of the rhinoceros beetle, Trypoxylus dichotomus (Coleoptera: Scarabaeidae)
Byung-Ho Bang, Moon-Soo Rhee, Dong-Ho Chang, Doo-Sang Park, Byoung-Chan Kim
Antonie van Leeuwenhoek.2015; 107(2): 443. CrossRef - Bacterial colonization of a fumigated alkaline saline soil
Juan M. Bello-López, Cristina A. Domínguez-Mendoza, Arit S. de León-Lorenzana, Laura Delgado-Balbuena, Yendi E. Navarro-Noya, Selene Gómez-Acata, Analine Rodríguez-Valentín, Victor M. Ruíz-Valdiviezo, Marco Luna-Guido, Nele Verhulst, Bram Govaerts, Luc De
Extremophiles.2014; 18(4): 733. CrossRef
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